Query 029354
Match_columns 194
No_of_seqs 249 out of 1198
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 11:34:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029354.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029354hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3309 Ferredoxin [Energy pro 100.0 7.5E-43 1.6E-47 278.1 11.9 143 51-194 16-159 (159)
2 PLN02593 adrenodoxin-like ferr 100.0 5.3E-35 1.2E-39 225.9 13.0 117 78-194 1-117 (117)
3 PTZ00490 Ferredoxin superfamil 100.0 1.5E-28 3.3E-33 195.9 13.5 110 74-184 32-142 (143)
4 TIGR02007 fdx_isc ferredoxin, 99.9 2.2E-22 4.7E-27 153.6 11.0 94 85-184 13-106 (110)
5 COG0633 Fdx Ferredoxin [Energy 99.9 1.6E-22 3.5E-27 152.7 9.9 99 78-180 2-101 (102)
6 TIGR02008 fdx_plant ferredoxin 99.8 3.5E-20 7.6E-25 138.3 8.7 95 77-183 2-96 (97)
7 CHL00134 petF ferredoxin; Vali 99.8 1.1E-19 2.3E-24 136.4 9.2 97 75-183 1-98 (99)
8 TIGR01941 nqrF NADH:ubiquinone 99.8 1.8E-18 3.9E-23 157.1 9.7 99 73-180 25-123 (405)
9 PLN03136 Ferredoxin; Provision 99.8 3.3E-18 7.1E-23 137.3 9.1 96 73-181 50-145 (148)
10 PTZ00038 ferredoxin; Provision 99.7 8.8E-18 1.9E-22 139.7 10.1 94 76-182 94-187 (191)
11 PRK05464 Na(+)-translocating N 99.7 7.5E-17 1.6E-21 146.7 10.7 97 73-180 31-127 (409)
12 PRK10713 2Fe-2S ferredoxin Yfa 99.7 2.7E-16 5.8E-21 114.6 8.8 83 77-177 1-84 (84)
13 COG2871 NqrF Na+-transporting 99.6 4.9E-16 1.1E-20 136.5 6.6 97 77-184 36-132 (410)
14 PF00111 Fer2: 2Fe-2S iron-sul 99.6 1.4E-15 3.1E-20 107.7 6.5 74 85-167 3-78 (78)
15 PRK07609 CDP-6-deoxy-delta-3,4 99.6 1.8E-15 3.9E-20 133.7 8.5 91 78-181 3-93 (339)
16 PRK11872 antC anthranilate dio 99.6 2.3E-15 4.9E-20 133.9 9.0 92 79-180 4-95 (340)
17 cd00207 fer2 2Fe-2S iron-sulfu 99.6 1.9E-15 4.1E-20 107.7 6.9 78 87-176 7-84 (84)
18 PRK05713 hypothetical protein; 99.6 4.1E-15 8.9E-20 130.6 7.0 77 90-178 9-85 (312)
19 COG3894 Uncharacterized metal- 99.5 3.1E-14 6.7E-19 132.1 6.1 91 77-182 1-91 (614)
20 TIGR02160 PA_CoA_Oxy5 phenylac 99.5 8E-14 1.7E-18 123.8 8.4 89 76-176 261-350 (352)
21 PRK10684 HCP oxidoreductase, N 99.5 1.4E-13 3.1E-18 121.7 8.2 86 75-175 246-331 (332)
22 PF13510 Fer2_4: 2Fe-2S iron-s 98.9 1.8E-09 4E-14 78.3 5.9 69 76-177 2-79 (82)
23 PRK07569 bidirectional hydroge 98.9 6E-09 1.3E-13 88.8 7.6 73 75-179 1-78 (234)
24 PRK08166 NADH dehydrogenase su 98.5 1.8E-07 3.9E-12 92.6 7.9 76 77-179 1-81 (847)
25 PRK06259 succinate dehydrogena 98.3 1.8E-06 4E-11 80.3 7.9 60 90-179 23-88 (486)
26 PF13085 Fer2_3: 2Fe-2S iron-s 98.1 4E-06 8.6E-11 64.4 4.7 60 90-176 21-90 (110)
27 PLN00129 succinate dehydrogena 98.1 9.7E-06 2.1E-10 71.3 6.8 91 70-187 36-145 (276)
28 PRK12814 putative NADPH-depend 98.0 1.1E-05 2.3E-10 78.0 7.4 73 75-179 1-78 (652)
29 PRK12577 succinate dehydrogena 98.0 2.1E-05 4.6E-10 70.4 7.8 41 89-131 20-66 (329)
30 PTZ00305 NADH:ubiquinone oxido 98.0 2.2E-05 4.8E-10 69.6 7.2 49 75-128 66-120 (297)
31 PRK08493 NADH dehydrogenase su 98.0 1.6E-05 3.4E-10 79.0 6.8 68 77-178 1-73 (819)
32 PRK13552 frdB fumarate reducta 97.9 1.3E-05 2.9E-10 68.9 5.0 41 89-131 25-71 (239)
33 PRK07860 NADH dehydrogenase su 97.9 2.8E-05 6.1E-10 76.9 7.4 49 75-128 2-55 (797)
34 PRK08640 sdhB succinate dehydr 97.8 2.6E-05 5.7E-10 67.5 5.2 41 89-131 24-77 (249)
35 PRK07570 succinate dehydrogena 97.8 4.1E-05 8.8E-10 66.4 5.3 58 90-168 22-90 (250)
36 PRK12385 fumarate reductase ir 97.7 4.1E-05 9E-10 66.0 4.9 55 75-131 4-72 (244)
37 PRK09908 xanthine dehydrogenas 97.7 0.00012 2.6E-09 59.7 7.1 50 79-131 8-58 (159)
38 PRK12386 fumarate reductase ir 97.7 8.5E-05 1.8E-09 64.5 6.2 41 89-131 21-67 (251)
39 PRK09129 NADH dehydrogenase su 97.7 9.7E-05 2.1E-09 72.6 7.1 47 77-128 1-52 (776)
40 PRK09130 NADH dehydrogenase su 97.7 9.8E-05 2.1E-09 72.1 6.7 48 77-129 1-53 (687)
41 PRK12576 succinate dehydrogena 97.6 0.00019 4.1E-09 63.1 7.6 41 89-131 26-72 (279)
42 TIGR01973 NuoG NADH-quinone ox 97.6 0.00013 2.8E-09 69.9 6.6 64 86-177 4-72 (603)
43 TIGR00384 dhsB succinate dehyd 97.5 8.5E-05 1.8E-09 62.7 3.5 41 89-131 16-62 (220)
44 COG1034 NuoG NADH dehydrogenas 97.5 0.0002 4.4E-09 70.0 6.0 47 77-128 1-52 (693)
45 COG0479 FrdB Succinate dehydro 97.4 0.00023 5E-09 61.3 5.4 40 90-131 22-67 (234)
46 PRK11433 aldehyde oxidoreducta 97.4 0.00057 1.2E-08 58.3 6.8 50 79-131 51-102 (217)
47 TIGR03193 4hydroxCoAred 4-hydr 97.4 0.00051 1.1E-08 55.4 6.2 44 86-131 7-52 (148)
48 COG3383 Uncharacterized anaero 97.3 0.00048 1E-08 67.8 5.9 52 75-132 3-59 (978)
49 PRK12575 succinate dehydrogena 97.2 0.00076 1.7E-08 58.0 5.5 71 90-187 25-104 (235)
50 TIGR03198 pucE xanthine dehydr 97.1 0.0013 2.9E-08 53.1 6.5 50 77-131 3-54 (151)
51 COG2080 CoxS Aerobic-type carb 96.9 0.0034 7.5E-08 51.0 6.8 51 77-132 3-55 (156)
52 PRK05950 sdhB succinate dehydr 96.7 0.0032 6.8E-08 53.6 5.7 41 89-131 19-66 (232)
53 PRK09800 putative hypoxanthine 95.8 0.021 4.6E-07 58.0 6.5 45 86-131 8-53 (956)
54 TIGR02963 xanthine_xdhA xanthi 95.2 0.032 6.9E-07 52.5 5.3 43 86-129 6-51 (467)
55 TIGR03313 Se_sel_red_Mo probab 95.2 0.03 6.6E-07 56.9 5.4 44 86-131 4-49 (951)
56 TIGR01372 soxA sarcosine oxida 94.3 0.22 4.8E-06 50.7 9.0 76 74-179 9-95 (985)
57 TIGR03311 Se_dep_Molyb_1 selen 94.1 0.097 2.1E-06 52.6 5.9 42 86-131 6-49 (848)
58 KOG2282 NADH-ubiquinone oxidor 92.8 0.26 5.6E-06 47.4 6.0 50 75-129 30-84 (708)
59 PLN00192 aldehyde oxidase 92.3 0.27 5.9E-06 51.9 6.1 48 77-128 5-55 (1344)
60 TIGR02969 mam_aldehyde_ox alde 91.0 0.36 7.9E-06 50.9 5.4 42 86-128 8-52 (1330)
61 cd01760 RBD Ubiquitin-like dom 74.2 6.9 0.00015 27.7 4.3 24 83-106 5-28 (72)
62 KOG3049 Succinate dehydrogenas 69.3 7.9 0.00017 33.6 4.3 38 90-128 68-112 (288)
63 smart00455 RBD Raf-like Ras-bi 68.9 11 0.00024 26.3 4.3 22 84-105 6-27 (70)
64 PRK01777 hypothetical protein; 66.4 15 0.00032 27.4 4.8 38 75-112 1-41 (95)
65 COG4630 XdhA Xanthine dehydrog 65.2 16 0.00034 34.3 5.7 48 79-128 8-58 (493)
66 cd06218 DHOD_e_trans FAD/NAD b 64.9 6.1 0.00013 33.4 2.8 32 99-131 194-231 (246)
67 PF02196 RBD: Raf-like Ras-bin 62.8 15 0.00033 25.6 4.1 27 78-106 3-29 (71)
68 cd06220 DHOD_e_trans_like2 FAD 61.0 6.5 0.00014 32.8 2.3 29 99-128 181-215 (233)
69 PRK08364 sulfur carrier protei 60.4 20 0.00043 24.7 4.3 36 75-111 2-37 (70)
70 PLN02906 xanthine dehydrogenas 59.7 9.7 0.00021 40.4 3.7 31 97-128 1-32 (1319)
71 cd01791 Ubl5 UBL5 ubiquitin-li 59.3 22 0.00047 24.9 4.4 27 77-103 1-27 (73)
72 PRK00054 dihydroorotate dehydr 58.8 6.1 0.00013 33.3 1.7 29 99-128 195-229 (250)
73 cd06221 sulfite_reductase_like 58.1 7.2 0.00016 33.1 2.1 28 99-127 204-240 (253)
74 PF03990 DUF348: Domain of unk 56.8 28 0.00061 21.8 4.2 30 80-111 2-31 (43)
75 cd06219 DHOD_e_trans_like1 FAD 55.2 9.2 0.0002 32.2 2.3 29 99-128 194-228 (248)
76 PRK06222 ferredoxin-NADP(+) re 54.6 9.6 0.00021 33.0 2.3 29 99-128 195-229 (281)
77 TIGR02911 sulfite_red_B sulfit 50.6 9.5 0.00021 32.6 1.6 28 99-127 204-240 (261)
78 KOG0430 Xanthine dehydrogenase 49.8 29 0.00064 36.6 5.1 86 86-191 8-96 (1257)
79 cd01763 Sumo Small ubiquitin-r 49.6 65 0.0014 22.9 5.7 33 72-104 6-38 (87)
80 PF02824 TGS: TGS domain; Int 47.6 27 0.00058 23.4 3.2 34 79-116 2-35 (60)
81 PF03658 Ub-RnfH: RnfH family 47.2 23 0.0005 25.9 3.0 33 78-110 3-36 (84)
82 PRK08345 cytochrome-c3 hydroge 46.2 14 0.0003 32.1 2.0 30 99-129 226-264 (289)
83 PF10418 DHODB_Fe-S_bind: Iron 46.2 13 0.00028 23.4 1.3 16 114-130 5-20 (40)
84 PRK05659 sulfur carrier protei 44.6 42 0.00092 22.3 3.9 28 79-111 2-29 (66)
85 cd01817 RGS12_RBD Ubiquitin do 42.5 51 0.0011 23.6 4.1 23 84-106 6-28 (73)
86 PRK08221 anaerobic sulfite red 42.5 14 0.0003 31.7 1.4 28 99-127 206-242 (263)
87 cd01816 Raf_RBD Ubiquitin doma 42.1 43 0.00094 24.1 3.6 39 85-129 7-45 (74)
88 PF11470 TUG-UBL1: GLUT4 regul 41.2 31 0.00066 23.9 2.7 24 84-107 3-26 (65)
89 cd01818 TIAM1_RBD Ubiquitin do 40.9 33 0.00071 24.9 2.9 21 85-105 7-27 (77)
90 PRK06437 hypothetical protein; 40.9 59 0.0013 22.3 4.1 25 86-110 9-33 (67)
91 PRK12778 putative bifunctional 38.5 27 0.00058 34.6 2.8 29 99-128 195-229 (752)
92 PRK07440 hypothetical protein; 36.3 88 0.0019 21.6 4.5 30 77-111 4-33 (70)
93 PRK05802 hypothetical protein; 35.5 30 0.00065 30.8 2.5 28 100-128 269-304 (320)
94 COG2914 Uncharacterized protei 33.9 83 0.0018 23.8 4.2 35 76-110 2-39 (99)
95 cd01809 Scythe_N Ubiquitin-lik 33.3 84 0.0018 20.7 3.9 25 79-103 2-26 (72)
96 PF00789 UBX: UBX domain; Int 31.5 1.2E+02 0.0025 20.9 4.5 31 73-103 2-32 (82)
97 PF11976 Rad60-SLD: Ubiquitin- 30.9 72 0.0016 21.3 3.3 45 78-132 1-49 (72)
98 TIGR02899 spore_safA spore coa 29.5 33 0.00072 20.1 1.3 18 94-111 1-18 (44)
99 PF10531 SLBB: SLBB domain; I 29.1 96 0.0021 20.3 3.6 24 90-113 12-35 (59)
100 PF07293 DUF1450: Protein of u 28.6 43 0.00093 24.2 1.9 43 97-144 16-63 (78)
101 cd06192 DHOD_e_trans_like FAD/ 27.7 32 0.00069 28.6 1.2 15 113-128 214-228 (243)
102 PRK06083 sulfur carrier protei 27.3 1.5E+02 0.0032 21.4 4.5 31 75-110 16-46 (84)
103 PF05715 zf-piccolo: Piccolo Z 27.3 29 0.00063 24.0 0.7 8 187-194 36-43 (61)
104 cd00118 LysM Lysin domain, fou 26.7 64 0.0014 18.0 2.1 21 91-111 2-22 (46)
105 PF01476 LysM: LysM domain; I 26.3 54 0.0012 19.6 1.8 19 93-111 2-20 (44)
106 PRK05863 sulfur carrier protei 26.2 1.5E+02 0.0032 19.9 4.2 28 79-111 2-29 (65)
107 COG2104 ThiS Sulfur transfer p 26.0 1.5E+02 0.0033 20.6 4.2 30 77-111 2-31 (68)
108 cd01803 Ubiquitin Ubiquitin. U 25.8 1.4E+02 0.0031 19.8 4.1 25 79-103 2-26 (76)
109 cd01806 Nedd8 Nebb8-like ubiq 25.4 1.4E+02 0.003 19.9 3.9 25 79-103 2-26 (76)
110 PRK06944 sulfur carrier protei 25.0 1.4E+02 0.0029 19.7 3.8 21 90-110 8-28 (65)
111 cd01805 RAD23_N Ubiquitin-like 23.6 1.6E+02 0.0036 19.7 4.1 25 79-103 2-26 (77)
112 PRK13669 hypothetical protein; 23.5 44 0.00096 24.2 1.1 32 108-144 28-63 (78)
113 PTZ00044 ubiquitin; Provisiona 22.9 1.7E+02 0.0037 19.6 4.1 25 79-103 2-26 (76)
114 cd01807 GDX_N ubiquitin-like d 22.8 1.7E+02 0.0038 19.7 4.1 25 79-103 2-26 (74)
115 PF04225 OapA: Opacity-associa 22.1 84 0.0018 22.6 2.4 22 90-111 3-24 (85)
116 cd01804 midnolin_N Ubiquitin-l 22.0 2E+02 0.0043 19.9 4.3 26 78-103 2-27 (78)
117 cd01792 ISG15_repeat1 ISG15 ub 21.8 1.8E+02 0.0039 20.1 4.1 26 78-103 3-28 (80)
118 cd01787 GRB7_RA RA (RAS-associ 21.4 2.2E+02 0.0048 20.9 4.5 27 80-106 5-31 (85)
119 PRK12775 putative trifunctiona 21.2 77 0.0017 32.8 2.8 29 99-128 195-229 (1006)
120 COG2071 Predicted glutamine am 21.2 54 0.0012 28.7 1.4 19 99-117 98-116 (243)
121 cd01802 AN1_N ubiquitin-like d 21.1 2.7E+02 0.0058 20.6 5.1 27 77-103 27-53 (103)
122 cd01810 ISG15_repeat2 ISG15 ub 21.1 2E+02 0.0043 19.5 4.1 23 81-103 2-24 (74)
123 PRK12779 putative bifunctional 20.2 82 0.0018 32.5 2.7 29 99-128 861-895 (944)
No 1
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=100.00 E-value=7.5e-43 Score=278.14 Aligned_cols=143 Identities=64% Similarity=1.050 Sum_probs=126.6
Q ss_pred cccccCcceeecccccCCC-CCCCCCCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEe
Q 029354 51 SIFQKYPHFSTTAENDASH-GSNKQKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVM 129 (194)
Q Consensus 51 ~~~~~~~~fs~~~~~~~~~-~~~~~~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~ 129 (194)
+++.+.+.|.++..+..+. .++++...|+|+|+++||+++.++++.|+|||++|.+|||+++++|+|+.+|+||||+|
T Consensus 16 a~~~~~~~f~~~~t~~~~~~~~~~~~e~i~Itfv~~dG~~~~i~g~vGdtlLd~ah~n~idleGACEgslACSTCHViv- 94 (159)
T KOG3309|consen 16 APFTRNHIFRTSSTSEFSPSKGPRKVEDIKITFVDPDGEEIKIKGKVGDTLLDAAHENNLDLEGACEGSLACSTCHVIV- 94 (159)
T ss_pred cccccceeeccCcccccccccCCCCCceEEEEEECCCCCEEEeeeecchHHHHHHHHcCCCccccccccccccceEEEE-
Confidence 4455556665544332222 33444555999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCChHHHhhccccCCCCCCeEEeeeeEEecCCCceEEEcCCcccccccCCCCCCCC
Q 029354 130 DMDYYNKLEDPTDEENDMLDLAFGLTETSRLGCQIVASPELDGIRLAIPAATRNFAVDGYVPKPH 194 (194)
Q Consensus 130 ~ge~~~~l~~~~~~E~~~L~~a~~l~~g~RLaCQ~~~~~dldgl~V~lP~~~~n~~~~~~~~~~~ 194 (194)
+.++|++|++|+++|++||+.|++++++|||+||+.+++|||||+|+||++++|+.+|||+||||
T Consensus 95 ~~~~yekl~ep~DeE~DmLDlA~gLt~tSRLGCQI~l~keldG~~v~vP~atrn~~vd~~~~kph 159 (159)
T KOG3309|consen 95 DEEYYEKLPEPEDEENDMLDLAFGLTETSRLGCQIVLTKELDGMRVAVPEATRNFRVDGFVPKPH 159 (159)
T ss_pred cHHHHhcCCCCcchHHHHHHhhhccccccccceEEEeccccCCcEEECccccccccccCCCCCCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999
No 2
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=100.00 E-value=5.3e-35 Score=225.86 Aligned_cols=117 Identities=85% Similarity=1.347 Sum_probs=112.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCCC
Q 029354 78 INVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTET 157 (194)
Q Consensus 78 i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~g 157 (194)
|+|+|++++|+++++++..|+|||++++++|+++++.|||.|+||||||+|+++++.+.+++++++|.++|+.+.++.++
T Consensus 1 ~~V~fi~~~G~~~~v~~~~G~tLl~a~~~~gi~i~~~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E~~~L~~~~~~~~~ 80 (117)
T PLN02593 1 ISVTFVDKDGEERTVKAPVGMSLLEAAHENDIELEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFGLTET 80 (117)
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCcceeCCCEEEEecCccccCCCCCChHHHHHHhcccCCCCC
Confidence 58999999999999999999999999999999999999999999999999987788999999999999999965788999
Q ss_pred eEEeeeeEEecCCCceEEEcCCcccccccCCCCCCCC
Q 029354 158 SRLGCQIVASPELDGIRLAIPAATRNFAVDGYVPKPH 194 (194)
Q Consensus 158 ~RLaCQ~~~~~dldgl~V~lP~~~~n~~~~~~~~~~~ 194 (194)
||||||+.+.+||||++|+||+..+|+.+++|+||||
T Consensus 81 sRLaCQ~~v~~~~~~~~v~ip~~~~~~~~~~~~~~~~ 117 (117)
T PLN02593 81 SRLGCQVIAKPELDGMRLALPAATRNFAVDGHVPKPH 117 (117)
T ss_pred eEecceeEeecCCCCEEEEcCchhccccccCCCCCCC
Confidence 9999999999999999999999999999999999999
No 3
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=99.96 E-value=1.5e-28 Score=195.94 Aligned_cols=110 Identities=36% Similarity=0.756 Sum_probs=101.0
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHC-CCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccC
Q 029354 74 QKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHEN-DIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAF 152 (194)
Q Consensus 74 ~~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~-gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~ 152 (194)
+...++|+|+++||.++++++++|+|||+++.++ ++++++.|||.|+||||||+|. .+|++++++++++|.++|+.+.
T Consensus 32 ~~g~v~I~~~~~dG~~~~v~~~~G~sLLeal~~~~~i~i~~~CGG~g~CgtC~V~V~-~g~~~~l~~~~~~E~~~L~~~~ 110 (143)
T PTZ00490 32 TPGKVKVCVKKRDGTHCDVEVPVGMSLMHALRDVAKLDVEGTCNGCMQCATCHVYLS-AASFKKLGGPSEEEEDVLAKAL 110 (143)
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCccHHHHHHHcCCCCccccCCCCCEeCCCEEEEC-CCccccCCCCChHHHHHhhccc
Confidence 4568999999999999999999999999999995 6899999999999999999995 4678999999999999999755
Q ss_pred CCCCCeEEeeeeEEecCCCceEEEcCCccccc
Q 029354 153 GLTETSRLGCQIVASPELDGIRLAIPAATRNF 184 (194)
Q Consensus 153 ~l~~g~RLaCQ~~~~~dldgl~V~lP~~~~n~ 184 (194)
++.++||||||+.+++||||++|+||+...|.
T Consensus 111 ~~~~gsRLaCQi~v~~~ldgl~V~vp~~~~~~ 142 (143)
T PTZ00490 111 DVKETSRLACQVDLTPEMDGLEVELPSYVTNR 142 (143)
T ss_pred cCCCCcEEeeeEEEecCCCCEEEEeCcccccc
Confidence 89999999999999999999999999987664
No 4
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=99.88 E-value=2.2e-22 Score=153.60 Aligned_cols=94 Identities=43% Similarity=0.739 Sum_probs=81.9
Q ss_pred CCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCCCeEEeeee
Q 029354 85 KDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTETSRLGCQI 164 (194)
Q Consensus 85 ~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~g~RLaCQ~ 164 (194)
+.| +++++.+|+||||+++++|+++++.|+|.|.||||+|+|.+| ...++++++.|.++|+...++.++|||+||+
T Consensus 13 p~~--~~~~~~~g~tLL~a~~~~gi~i~~~CgG~G~CgtC~v~V~~G--~~~~~~~~~~e~~~L~~~~~~~~~~RLaCq~ 88 (110)
T TIGR02007 13 PEG--AVVEAKPGETILDVALDNGIEIEHACEKSCACTTCHCIVREG--FDSLEEASEQEEDMLDKAWGLEPDSRLSCQA 88 (110)
T ss_pred CCC--eEEEECCCChHHHHHHHcCCCccccCCCCceeCCCEEEEeec--cccCCCCCHHHHHHHhhccCCCCCcEEeeeE
Confidence 445 789999999999999999999999999999999999999865 4678888899999998545789999999999
Q ss_pred EEecCCCceEEEcCCccccc
Q 029354 165 VASPELDGIRLAIPAATRNF 184 (194)
Q Consensus 165 ~~~~dldgl~V~lP~~~~n~ 184 (194)
.+.++ +++|++|..+++.
T Consensus 89 ~~~~~--dl~v~~~~~~~~~ 106 (110)
T TIGR02007 89 VVADE--DLVVEIPKYTINH 106 (110)
T ss_pred EEcCC--CEEEEECchhhhh
Confidence 99853 5999999876654
No 5
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=99.88 E-value=1.6e-22 Score=152.68 Aligned_cols=99 Identities=39% Similarity=0.618 Sum_probs=83.7
Q ss_pred EEEEEEcCCCCE-EEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCC
Q 029354 78 INVTFVDKDGEE-KNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTE 156 (194)
Q Consensus 78 i~Vt~~~~~G~~-~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~ 156 (194)
.++.|+..+++. ..+.+..|+||||+|.++||+++++|+| |+||||||+|++| ++.++++++.|+++|+ +.....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~g~tiLe~a~~~gi~i~~~C~~-g~C~TC~v~v~~G--~~~v~~~~~~e~~~l~-~~~~~~ 77 (102)
T COG0633 2 PKIAFVTIDGEGDVTEAVNEGETLLEAAERNGIPIEYACRG-GACGTCRVKVLEG--FDEVSPPEESEEDLLD-AAGLEG 77 (102)
T ss_pred CceEEEeccCCcceEEeccCCcHHHHHHHHCCCcceecCCC-CccCccEEEEecC--cccCCCcchHHHHHHH-hhccCC
Confidence 345555555543 4455556999999999999999999986 5999999999865 7889999999999999 688999
Q ss_pred CeEEeeeeEEecCCCceEEEcCCc
Q 029354 157 TSRLGCQIVASPELDGIRLAIPAA 180 (194)
Q Consensus 157 g~RLaCQ~~~~~dldgl~V~lP~~ 180 (194)
++||+||+++.+|++..++.+|+.
T Consensus 78 ~~rL~Cq~~~~~d~~i~~~~~~~~ 101 (102)
T COG0633 78 NSRLSCQCRVKGDLDIEVVEEPEY 101 (102)
T ss_pred CcEEeeeeEECCCcceEEEeccCC
Confidence 999999999999998888888864
No 6
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=99.82 E-value=3.5e-20 Score=138.32 Aligned_cols=95 Identities=26% Similarity=0.383 Sum_probs=78.3
Q ss_pred cEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCC
Q 029354 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTE 156 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~ 156 (194)
.++|+|..++|..+++.+++|+||||+++++||++++.|+ +|.||+|+|+|++|+.. ..+...|. .+++.+
T Consensus 2 ~~~v~~~~~~~~~~~~~~~~g~tLLda~~~~Gi~i~~~C~-~G~Cg~C~v~v~~G~~~-------~~~~~~l~-~~~~~~ 72 (97)
T TIGR02008 2 TYKVTLVNPDGGEETIECPDDQYILDAAEEAGIDLPYSCR-AGACSTCAGKVEEGTVD-------QSDQSFLD-DDQMEA 72 (97)
T ss_pred eEEEEEEECCCCEEEEEECCCCcHHHHHHHcCCCCCcCCC-CccCCCCceEEEeCcEe-------cCccCCCC-HHHHhC
Confidence 3578886577877999999999999999999999999997 89999999999988632 11223355 256788
Q ss_pred CeEEeeeeEEecCCCceEEEcCCcccc
Q 029354 157 TSRLGCQIVASPELDGIRLAIPAATRN 183 (194)
Q Consensus 157 g~RLaCQ~~~~~dldgl~V~lP~~~~n 183 (194)
|+||+||+.+.+| ++|++|...++
T Consensus 73 g~~LaC~~~~~~d---i~v~~~~~~~~ 96 (97)
T TIGR02008 73 GYVLTCVAYPTSD---CTIETHKEEDL 96 (97)
T ss_pred CeEEEeeCEECCC---eEEEecccccc
Confidence 9999999999998 89999987654
No 7
>CHL00134 petF ferredoxin; Validated
Probab=99.81 E-value=1.1e-19 Score=136.42 Aligned_cols=97 Identities=24% Similarity=0.352 Sum_probs=78.8
Q ss_pred CCcEEEEEEc-CCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCC
Q 029354 75 KDMINVTFVD-KDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFG 153 (194)
Q Consensus 75 ~~~i~Vt~~~-~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~ 153 (194)
|..++|++.+ .+|..++|.++.|+||||+|+++||++++.|+ .|.||+|+++|++|+.. ..+...|+ ..+
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~tLL~a~~~~Gi~i~~~C~-~G~Cg~C~v~v~~G~v~-------~~~~~~l~-~~e 71 (99)
T CHL00134 1 MATYKVTLLSEEEGIDVTIDCPDDVYILDAAEEQGIDLPYSCR-AGACSTCAGKVTEGTVD-------QSDQSFLD-DDQ 71 (99)
T ss_pred CCeEEEEEEecCCCCeEEEEECCCCcHHHHHHHcCCCCCcCCC-CccCCCCEEEEEeCccc-------cCcccCCC-HHH
Confidence 3457788764 25666789999999999999999999999997 99999999999988542 11223355 356
Q ss_pred CCCCeEEeeeeEEecCCCceEEEcCCcccc
Q 029354 154 LTETSRLGCQIVASPELDGIRLAIPAATRN 183 (194)
Q Consensus 154 l~~g~RLaCQ~~~~~dldgl~V~lP~~~~n 183 (194)
+++|++|+||+.+.+| ++|++|...++
T Consensus 72 ~~~g~~L~C~~~~~~d---~~i~~~~~~~~ 98 (99)
T CHL00134 72 LEAGFVLTCVAYPTSD---CTILTHQEEEL 98 (99)
T ss_pred HhCCeEEEeeCEECCC---eEEEecccccc
Confidence 7889999999999998 89999987654
No 8
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.76 E-value=1.8e-18 Score=157.10 Aligned_cols=99 Identities=28% Similarity=0.417 Sum_probs=83.5
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccC
Q 029354 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAF 152 (194)
Q Consensus 73 ~~~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~ 152 (194)
+-+.+.+|+++..+|+.+++++++|+||||+++++|+++++.|+|.|.||+|+|+|.+|+. +++..|...|+. .
T Consensus 25 ~~~~~~~v~v~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~G~~-----~~~~~~~~~L~~-~ 98 (405)
T TIGR01941 25 KLVSSGDITIGINDDEEKSITVPAGGKLLNTLASNGIFISSACGGGGTCGQCRVRVVEGGG-----EILPTELSHFSK-R 98 (405)
T ss_pred hccccccEEEEEcCCCceEEEECCCChHHHHHHHcCCCCcccCCCccEeCCCEEEEccCCc-----CCChhhhhhcCH-h
Confidence 3455666777666777799999999999999999999999999988999999999987643 345567788884 7
Q ss_pred CCCCCeEEeeeeEEecCCCceEEEcCCc
Q 029354 153 GLTETSRLGCQIVASPELDGIRLAIPAA 180 (194)
Q Consensus 153 ~l~~g~RLaCQ~~~~~dldgl~V~lP~~ 180 (194)
++.+|+||+||+.+.+| ++|++|..
T Consensus 99 ~~~~g~rLaCq~~~~~d---~~i~~~~~ 123 (405)
T TIGR01941 99 EAKEGWRLSCQVKVKQD---MSIEIPEE 123 (405)
T ss_pred HhcCCcEEEeeCEECCC---EEEEECcc
Confidence 88999999999999988 89998854
No 9
>PLN03136 Ferredoxin; Provisional
Probab=99.75 E-value=3.3e-18 Score=137.33 Aligned_cols=96 Identities=21% Similarity=0.376 Sum_probs=80.0
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccC
Q 029354 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAF 152 (194)
Q Consensus 73 ~~~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~ 152 (194)
..|..++|+|++++| .+++++++|++|||+++++||++++.|+ .|.||+|+++|++|+.. ..+...|+. +
T Consensus 50 ~~m~~~~V~l~~~~~-~~~~~~~~g~tILdAa~~~Gi~lp~sCr-~G~CGtC~~~l~~G~V~-------~~~~~~L~~-~ 119 (148)
T PLN03136 50 TAMATYKVKFITPEG-EQEVECEEDVYVLDAAEEAGIDLPYSCR-AGSCSSCAGKVVSGSID-------QSDQSFLDD-E 119 (148)
T ss_pred ceeeeEEEEEecCCC-cEEEEeCCCCcHHHHHHHcCCCCCcCCC-CccCCCCEEEEecCcCc-------cCcccCCCH-H
Confidence 446778899875554 4789999999999999999999999997 89999999999987531 223345763 7
Q ss_pred CCCCCeEEeeeeEEecCCCceEEEcCCcc
Q 029354 153 GLTETSRLGCQIVASPELDGIRLAIPAAT 181 (194)
Q Consensus 153 ~l~~g~RLaCQ~~~~~dldgl~V~lP~~~ 181 (194)
++++|+||+||+++.+| ++|++|...
T Consensus 120 e~~~G~~LaC~a~p~sD---~~Ie~~~e~ 145 (148)
T PLN03136 120 QISEGYVLTCVAYPTSD---VVIETHKEE 145 (148)
T ss_pred HhcCCEEEEeEeEECCC---cEEecCChh
Confidence 78899999999999998 899999764
No 10
>PTZ00038 ferredoxin; Provisional
Probab=99.74 E-value=8.8e-18 Score=139.73 Aligned_cols=94 Identities=24% Similarity=0.373 Sum_probs=78.5
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCC
Q 029354 76 DMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLT 155 (194)
Q Consensus 76 ~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~ 155 (194)
-.++|+|..++| .+++++++|+||||+++++||++++.|+ .|.||+|+|+|++|+. +..|...|+. ++++
T Consensus 94 ~~~~Vt~~~~~g-~~~~~v~~geTILdAae~aGI~lp~sCr-~G~CGtCkvrV~~GeV-------~~~e~~~Ls~-ee~~ 163 (191)
T PTZ00038 94 LFYNITLQTPDG-EKVIECDEDEYILDAAERQGVELPYSCR-GGSCSTCAAKLLEGEV-------DNEDQSYLDD-EQLK 163 (191)
T ss_pred ceEEEEEEeCCC-cEEEEeCCCCcHHHHHHHcCCCCCcCCC-CccCCCCEeEEeeccc-------ccCccccCCH-HHhc
Confidence 346788865555 3789999999999999999999999998 5999999999998753 2234456774 6788
Q ss_pred CCeEEeeeeEEecCCCceEEEcCCccc
Q 029354 156 ETSRLGCQIVASPELDGIRLAIPAATR 182 (194)
Q Consensus 156 ~g~RLaCQ~~~~~dldgl~V~lP~~~~ 182 (194)
+|+||+||+++.+| ++|++|...+
T Consensus 164 ~G~~LaCqa~p~sD---i~Ie~p~e~~ 187 (191)
T PTZ00038 164 KGYCLLCTCYPKSD---CTIETHKEDE 187 (191)
T ss_pred CCEEEEeeCEECCC---eEEecCChHH
Confidence 99999999999998 8999998765
No 11
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.70 E-value=7.5e-17 Score=146.70 Aligned_cols=97 Identities=27% Similarity=0.421 Sum_probs=80.2
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccC
Q 029354 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAF 152 (194)
Q Consensus 73 ~~~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~ 152 (194)
++..+++|++.+ +..+++++++|+||||+++++|+++++.|+|.|.||+|+|+|++|+. .+...|...|+. .
T Consensus 31 ~~~~~~~i~~~~--~~~~~~~~~~g~tLL~a~~~~gi~i~~~C~g~G~CgtC~v~v~~G~~-----~~~~~e~~~l~~-~ 102 (409)
T PRK05464 31 VPSGDVTIKING--DPEKTITVPAGGKLLGALASNGIFLSSACGGGGSCGQCRVKVKEGGG-----DILPTELSHISK-R 102 (409)
T ss_pred ccCccEEEEEcC--CCcEEEEECCCchHHHHHHHcCCCcccCCCCccEeCCCEEEEecCCc-----CCChhhhhhcCH-h
Confidence 456788888742 22378999999999999999999999999988999999999987753 344566777874 7
Q ss_pred CCCCCeEEeeeeEEecCCCceEEEcCCc
Q 029354 153 GLTETSRLGCQIVASPELDGIRLAIPAA 180 (194)
Q Consensus 153 ~l~~g~RLaCQ~~~~~dldgl~V~lP~~ 180 (194)
++.+++||+||+.+.+| ++|+++..
T Consensus 103 e~~~g~rLaCq~~~~~d---~~ie~~~~ 127 (409)
T PRK05464 103 EAKEGWRLSCQVKVKQD---MKIEVPEE 127 (409)
T ss_pred hccCCcEEEeeCEECCC---EEEEECcc
Confidence 78899999999999998 88988743
No 12
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=99.67 E-value=2.7e-16 Score=114.59 Aligned_cols=83 Identities=18% Similarity=0.262 Sum_probs=65.3
Q ss_pred cEEEEEEcCCCCEEEEEeCC-CchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCC
Q 029354 77 MINVTFVDKDGEEKNIKVPV-GMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLT 155 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~-GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~ 155 (194)
|.+|+|. ..| +++.+.+ |+||||+++++||++++.|+ .|.||+|++++++|+... ... . + .+++
T Consensus 1 ~~~v~~~-~~~--~~~~~~~~~~tlL~a~~~~gi~~p~~Cr-~G~Cg~C~~~~~sG~v~~-~~~-~--~-------~~~~ 65 (84)
T PRK10713 1 MARVTLR-ITG--TQLLCQDEHPSLLAALESHNVAVEYQCR-EGYCGSCRTRLVAGQVDW-IAE-P--L-------AFIQ 65 (84)
T ss_pred CCEEEEE-eCC--cEEEecCCCCcHHHHHHHcCCCCCCCCC-CeECCCCEeEEEeCeEec-CCC-c--c-------chhh
Confidence 5567775 345 6789986 59999999999999999997 899999999999987521 111 0 0 2356
Q ss_pred CCeEEeeeeEEecCCCceEEEc
Q 029354 156 ETSRLGCQIVASPELDGIRLAI 177 (194)
Q Consensus 156 ~g~RLaCQ~~~~~dldgl~V~l 177 (194)
++++|+||+++.+| ++|++
T Consensus 66 ~g~~L~C~~~p~sd---~~ie~ 84 (84)
T PRK10713 66 PGEILPCCCRAKGD---IEIEM 84 (84)
T ss_pred CCEEEEeeCEECCC---EEEeC
Confidence 78999999999998 78874
No 13
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.62 E-value=4.9e-16 Score=136.53 Aligned_cols=97 Identities=25% Similarity=0.359 Sum_probs=81.1
Q ss_pred cEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCC
Q 029354 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTE 156 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~ 156 (194)
.++|.+. +..++++.+++|.+||.++..+||.++.+|||.|+||.|+|+|.+|.+ ++-+.|...+.. .+..+
T Consensus 36 d~ti~IN--~d~e~~~t~~aG~kLL~~L~~~gifi~SaCGGggsC~QCkv~v~~ggg-----e~LpTe~sh~sk-rea~e 107 (410)
T COG2871 36 DITIKIN--GDPEKTKTVPAGGKLLGALASSGIFISSACGGGGSCGQCKVRVKKGGG-----EILPTELSHISK-REAKE 107 (410)
T ss_pred ceEEEeC--CChhhceecCCchhHHHHHHhCCcccccCCCCCccccccEEEEecCCC-----ccCcchhhhhhh-hhhhc
Confidence 4566654 334689999999999999999999999999999999999999987532 455567777774 78899
Q ss_pred CeEEeeeeEEecCCCceEEEcCCccccc
Q 029354 157 TSRLGCQIVASPELDGIRLAIPAATRNF 184 (194)
Q Consensus 157 g~RLaCQ~~~~~dldgl~V~lP~~~~n~ 184 (194)
||||+||+.++.| |.|++|+...|.
T Consensus 108 G~RLsCQ~~Vk~d---m~levpEe~fgv 132 (410)
T COG2871 108 GWRLSCQVNVKHD---MDLEVPEEVFGV 132 (410)
T ss_pred cceEEEEeccccc---ceeechHHhcCc
Confidence 9999999999999 899999876554
No 14
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=99.61 E-value=1.4e-15 Score=107.67 Aligned_cols=74 Identities=28% Similarity=0.522 Sum_probs=55.8
Q ss_pred CCCCEEEEEeCCCch-HHHHHHHC-CCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCCCeEEee
Q 029354 85 KDGEEKNIKVPVGMS-MLEAAHEN-DIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTETSRLGC 162 (194)
Q Consensus 85 ~~G~~~~v~v~~Get-LLdaa~~~-gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~g~RLaC 162 (194)
.+|+.++|++++|++ ||++++++ |+++++.|++. .||+|+|+|.+|+.... ....|.+.++ ..+.||+|
T Consensus 3 i~g~~~~~~~~~~~~~ll~~~~~~~gi~i~~~C~~g-~Cg~C~v~v~~G~~~~~---~~~~~~~~~~-----~~~~rLaC 73 (78)
T PF00111_consen 3 INGKGVTVEVPPGETLLLDALERAGGIGIPYSCGGG-GCGTCRVRVLEGEVQSN---ETFLEDEELA-----EGGIRLAC 73 (78)
T ss_dssp TTTEEEEEEEETTSBBHHHHHHHTTTTTSTTSSSSS-SSSTTEEEEEESEEETT---TSSSHHHHHH-----TTEEEEGG
T ss_pred ECCeEEEEEeCCCccHHHHHHHHcCCCCcccCCCCC-ccCCcEEEEeeCcccCC---cccCCHHHHH-----cCCCcCCc
Confidence 367778999999999 99999999 99999999864 59999999998875211 1222222222 23458999
Q ss_pred eeEEe
Q 029354 163 QIVAS 167 (194)
Q Consensus 163 Q~~~~ 167 (194)
|++++
T Consensus 74 q~~~t 78 (78)
T PF00111_consen 74 QTRVT 78 (78)
T ss_dssp GSEES
T ss_pred EEEeC
Confidence 99874
No 15
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.60 E-value=1.8e-15 Score=133.68 Aligned_cols=91 Identities=18% Similarity=0.273 Sum_probs=73.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCCC
Q 029354 78 INVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTET 157 (194)
Q Consensus 78 i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~g 157 (194)
++|+|.. .| +++++++|+||||+++++||++++.|+ .|.||+|+|++++|+.. ....+...|+. .+..++
T Consensus 3 ~~v~~~~-~~--~~~~~~~g~tlL~a~~~~gi~~~~~C~-~G~Cg~C~~~~~~G~~~-----~~~~~~~~l~~-~~~~~g 72 (339)
T PRK07609 3 FQVTLQP-SG--RQFTAEPDETILDAALRQGIHLPYGCK-NGACGSCKGRLLEGEVE-----QGPHQASALSG-EERAAG 72 (339)
T ss_pred EEEEEec-CC--eEEEeCCCCcHHHHHHHcCCCCCCCCC-CeECCCCEEEEEECcEe-----cccccccCCCH-HHHhCC
Confidence 4677763 44 789999999999999999999999997 89999999999988642 22223455663 567789
Q ss_pred eEEeeeeEEecCCCceEEEcCCcc
Q 029354 158 SRLGCQIVASPELDGIRLAIPAAT 181 (194)
Q Consensus 158 ~RLaCQ~~~~~dldgl~V~lP~~~ 181 (194)
+||+||+++.+| ++|++|...
T Consensus 73 ~~L~C~~~~~~d---~~i~~~~~~ 93 (339)
T PRK07609 73 EALTCCAKPLSD---LVLEAREVP 93 (339)
T ss_pred cEEEeeCEECCC---EEEEecccc
Confidence 999999999998 899988643
No 16
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.60 E-value=2.3e-15 Score=133.91 Aligned_cols=92 Identities=23% Similarity=0.273 Sum_probs=72.8
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCCCe
Q 029354 79 NVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTETS 158 (194)
Q Consensus 79 ~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~g~ 158 (194)
+|++...+|....+++.+|+||||+++++|+.+++.|+ .|.||+|+++|++|+. +....+...|.. .+..+++
T Consensus 4 ~v~~~~~~~~~~~~~~~~g~tlL~a~~~~g~~~p~~C~-~G~Cg~C~~~~~~G~~-----~~~~~~~~~l~~-~~~~~g~ 76 (340)
T PRK11872 4 KVALSFADGKTLFFPVGKDELLLDAALRNGINLPLDCR-EGVCGTCQGRCESGIY-----SQDYVDEDALSE-RDLAQRK 76 (340)
T ss_pred EEEEEecCCcEEEEEeCCCCcHHHHHHHcCCCCcCCCC-CeECCCCEEEEEeCcc-----ccCccccccCCH-HHHhCCe
Confidence 44443346777778999999999999999999999997 7999999999998864 122223345653 5667899
Q ss_pred EEeeeeEEecCCCceEEEcCCc
Q 029354 159 RLGCQIVASPELDGIRLAIPAA 180 (194)
Q Consensus 159 RLaCQ~~~~~dldgl~V~lP~~ 180 (194)
||+||+++.+| ++|++|..
T Consensus 77 ~L~C~~~~~~d---~~i~~~~~ 95 (340)
T PRK11872 77 MLACQTRVKSD---AAFYFDFD 95 (340)
T ss_pred EEEeeCEECCc---eEEEecCc
Confidence 99999999998 89987753
No 17
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=99.60 E-value=1.9e-15 Score=107.69 Aligned_cols=78 Identities=29% Similarity=0.533 Sum_probs=61.6
Q ss_pred CCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCCCeEEeeeeEE
Q 029354 87 GEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTETSRLGCQIVA 166 (194)
Q Consensus 87 G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~g~RLaCQ~~~ 166 (194)
|+.+++++++|+|||++++++|+++++.|+ .|.||+|+|+|.+|+. .+.+. ..+. ..+..+++||+||+.+
T Consensus 7 ~~~~~~~~~~g~~ll~al~~~g~~~~~~C~-~g~Cg~C~v~v~~G~~--~~~~~-----~~~~-~~~~~~~~~LaC~~~~ 77 (84)
T cd00207 7 GSGVEVEVPEGETLLDAAREAGIDIPYSCR-AGACGTCKVEVVEGEV--DQSDP-----SLLD-EEEAEGGYVLACQTRV 77 (84)
T ss_pred CCCEEEEECCCCcHHHHHHHcCCCcccCCC-CcCCcCCEEEEeeCcc--ccCcc-----cCCC-HHHHhCCeEEEEeCee
Confidence 555899999999999999999999999997 5899999999987643 22111 2333 3556789999999999
Q ss_pred ecCCCceEEE
Q 029354 167 SPELDGIRLA 176 (194)
Q Consensus 167 ~~dldgl~V~ 176 (194)
.+| |+|+
T Consensus 78 ~~~---i~v~ 84 (84)
T cd00207 78 TDG---LVIE 84 (84)
T ss_pred CCC---cEEC
Confidence 877 6663
No 18
>PRK05713 hypothetical protein; Provisional
Probab=99.57 E-value=4.1e-15 Score=130.60 Aligned_cols=77 Identities=21% Similarity=0.375 Sum_probs=64.9
Q ss_pred EEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCCCeEEeeeeEEecC
Q 029354 90 KNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTETSRLGCQIVASPE 169 (194)
Q Consensus 90 ~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~g~RLaCQ~~~~~d 169 (194)
++|++++|+||||+++++||++++.|+ .|.||+|+|+|++|+..+. +...|. ..++.+++||+||+.+.+|
T Consensus 9 ~~~~~~~g~tlL~a~~~~gi~~~~~C~-~G~Cg~C~~~~~~G~~~~~-------~~~~l~-~~~~~~g~~L~C~~~~~~d 79 (312)
T PRK05713 9 RRWSVPAGSNLLDALNAAGVAVPYSCR-AGSCHACLVRCLQGEPEDA-------LPEALA-AEKREQGWRLACQCRVVGD 79 (312)
T ss_pred eEEEECCCCcHHHHHHHcCCCCCcCCC-CcCCCCCeEEEEeCccccC-------ccccCC-HHHHhCCeEEEeECEECCc
Confidence 789999999999999999999999997 7999999999998864211 123454 2557789999999999998
Q ss_pred CCceEEEcC
Q 029354 170 LDGIRLAIP 178 (194)
Q Consensus 170 ldgl~V~lP 178 (194)
++|+++
T Consensus 80 ---~~i~~~ 85 (312)
T PRK05713 80 ---LRVEVF 85 (312)
T ss_pred ---eEEEec
Confidence 899986
No 19
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=99.49 E-value=3.1e-14 Score=132.09 Aligned_cols=91 Identities=31% Similarity=0.544 Sum_probs=75.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCC
Q 029354 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTE 156 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~ 156 (194)
|+.|+|. +.| ++.+ .+|+|+||+|++.|+.+.+.|||.|+||+|.|.|.+|+ .++...++-|+ .+. ..
T Consensus 1 ~p~v~f~-psg--kr~~-~~g~~il~aar~~gv~i~s~cggk~~cgkc~v~v~~g~--~~i~s~~dh~k-~~~-----~~ 68 (614)
T COG3894 1 MPLVTFM-PSG--KRGE-DEGTTILDAARRLGVYIRSVCGGKGTCGKCQVVVQEGN--HKIVSSTDHEK-YLR-----ER 68 (614)
T ss_pred CceeEee-cCC--CcCC-CCCchHHHHHHhhCceEeeecCCCccccceEEEEEeCC--ceeccchhHHH-HHH-----hh
Confidence 5678887 788 5566 99999999999999999999999999999999998776 35555566553 333 34
Q ss_pred CeEEeeeeEEecCCCceEEEcCCccc
Q 029354 157 TSRLGCQIVASPELDGIRLAIPAATR 182 (194)
Q Consensus 157 g~RLaCQ~~~~~dldgl~V~lP~~~~ 182 (194)
|+||+||..+.+| ++|.+|+.++
T Consensus 69 g~rlac~~~v~gd---~~i~ip~es~ 91 (614)
T COG3894 69 GYRLACQAQVLGD---LVIFIPPESR 91 (614)
T ss_pred ceeeeeehhhcCc---eEEEcCchhh
Confidence 9999999999998 8999998864
No 20
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.48 E-value=8e-14 Score=123.79 Aligned_cols=89 Identities=25% Similarity=0.312 Sum_probs=69.3
Q ss_pred CcEEEEEEcCCCCEEE-EEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCC
Q 029354 76 DMINVTFVDKDGEEKN-IKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGL 154 (194)
Q Consensus 76 ~~i~Vt~~~~~G~~~~-v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l 154 (194)
...+|+|. .+|.... +.++.|+||||+++++||++++.|+ .|.||+|++++++|+.. ..+...|+. .++
T Consensus 261 ~~~~v~~~-~~~~~~~~~~~~~~~slL~~~~~~gi~~~~~C~-~G~Cg~C~~~~~~G~v~-------~~~~~~l~~-~~~ 330 (352)
T TIGR02160 261 DVSKVTVT-LDGRSTETSSLSRDESVLDAALRARPDLPFACK-GGVCGTCRAKVLEGKVD-------MERNYALEP-DEV 330 (352)
T ss_pred CceEEEEE-ECCceEEEEecCCCCcHHHHHHHcCCCCcCCCC-CccCCCCEEEEeccccc-------cccccCCCH-HHH
Confidence 45677776 3665443 6789999999999999999999997 69999999999988642 122334653 567
Q ss_pred CCCeEEeeeeEEecCCCceEEE
Q 029354 155 TETSRLGCQIVASPELDGIRLA 176 (194)
Q Consensus 155 ~~g~RLaCQ~~~~~dldgl~V~ 176 (194)
++|++|+||+++.+| .++|.
T Consensus 331 ~~g~~l~C~~~~~~~--~~~~~ 350 (352)
T TIGR02160 331 DAGYVLTCQAYPLSD--KLVVD 350 (352)
T ss_pred hCCcEEEeeEEECCC--cEEEe
Confidence 889999999999887 46665
No 21
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.46 E-value=1.4e-13 Score=121.67 Aligned_cols=86 Identities=21% Similarity=0.387 Sum_probs=69.1
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCC
Q 029354 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGL 154 (194)
Q Consensus 75 ~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l 154 (194)
...++|++.+ .| +++.+++|+||||+|+++||++++.|+ .|.||+|++++++|+.. . .....|+. .++
T Consensus 246 ~~~~~v~~~~-~~--~~~~~~~~~~lL~~~~~~gi~~~~~C~-~G~Cg~C~~~~~~G~v~-----~--~~~~~l~~-~~~ 313 (332)
T PRK10684 246 TSGLTFTKLQ-PA--REFYAPVGTTLLEALESNKVPVVAACR-AGVCGCCKTKVVSGEYT-----V--SSTMTLTP-AEI 313 (332)
T ss_pred CCceEEEEec-CC--EEEEeCCCChHHHHHHHcCCCccCCCC-CcCCCCCEEEEecCccc-----c--cccccCCH-HHH
Confidence 3466787764 44 789999999999999999999999997 89999999999988642 1 11234553 667
Q ss_pred CCCeEEeeeeEEecCCCceEE
Q 029354 155 TETSRLGCQIVASPELDGIRL 175 (194)
Q Consensus 155 ~~g~RLaCQ~~~~~dldgl~V 175 (194)
++|++|+||+++.+| ++|
T Consensus 314 ~~g~~l~C~~~~~~d---~~i 331 (332)
T PRK10684 314 AQGYVLACSCHPQGD---LVL 331 (332)
T ss_pred hCCcEEEeeCEECCC---eEE
Confidence 889999999999988 665
No 22
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.94 E-value=1.8e-09 Score=78.34 Aligned_cols=69 Identities=29% Similarity=0.525 Sum_probs=47.1
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCC---------CccccccEEEEecccccCCCCCCChHHHh
Q 029354 76 DMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEG---------SLACSTCHVIVMDMDYYNKLEDPTDEEND 146 (194)
Q Consensus 76 ~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG---------~G~CGTC~V~V~~ge~~~~l~~~~~~E~~ 146 (194)
++++|+| || +.+++++|+|||+|+.++|++++..|.. .|.|+.|.|.| +|+
T Consensus 2 ~~v~i~i---dG--~~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev-~g~-------------- 61 (82)
T PF13510_consen 2 KMVTITI---DG--KPVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEV-DGE-------------- 61 (82)
T ss_dssp EEEEEEE---TT--EEEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEE-SSE--------------
T ss_pred CEEEEEE---CC--EEEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEE-CCC--------------
Confidence 5677776 57 7899999999999999999999998873 49999999999 431
Q ss_pred hccccCCCCCCeEEeeeeEEecCCCceEEEc
Q 029354 147 MLDLAFGLTETSRLGCQIVASPELDGIRLAI 177 (194)
Q Consensus 147 ~L~~a~~l~~g~RLaCQ~~~~~dldgl~V~l 177 (194)
....||++.+.. ||+|+-
T Consensus 62 ----------~~v~AC~t~v~~---GM~V~T 79 (82)
T PF13510_consen 62 ----------PNVRACSTPVED---GMVVET 79 (82)
T ss_dssp ----------EEEETTT-B--T---TEEEE-
T ss_pred ----------cceEcccCCCcC---CcEEEE
Confidence 124799999886 588864
No 23
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=98.87 E-value=6e-09 Score=88.80 Aligned_cols=73 Identities=22% Similarity=0.367 Sum_probs=58.1
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCC-----CCccccccEEEEecccccCCCCCCChHHHhhcc
Q 029354 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACE-----GSLACSTCHVIVMDMDYYNKLEDPTDEENDMLD 149 (194)
Q Consensus 75 ~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~Cg-----G~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~ 149 (194)
|.+++|++ || +.+++++|+|||++++++|+++|+.|. +.|.|+.|.|.| +|+
T Consensus 1 m~~v~i~i---dg--~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v-~g~----------------- 57 (234)
T PRK07569 1 MSVKTLTI---DD--QLVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEI-EGS----------------- 57 (234)
T ss_pred CceEEEEE---CC--EEEEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEE-CCC-----------------
Confidence 45677776 57 679999999999999999999999996 579999999999 442
Q ss_pred ccCCCCCCeEEeeeeEEecCCCceEEEcCC
Q 029354 150 LAFGLTETSRLGCQIVASPELDGIRLAIPA 179 (194)
Q Consensus 150 ~a~~l~~g~RLaCQ~~~~~dldgl~V~lP~ 179 (194)
.+.+.||++.+.. ||+|..-.
T Consensus 58 ------~~~~~aC~t~v~~---Gm~v~t~~ 78 (234)
T PRK07569 58 ------NKLLPACVTPVAE---GMVVQTNT 78 (234)
T ss_pred ------CccccCcCCCCCC---CCEEEECC
Confidence 1334589888875 58887543
No 24
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=98.55 E-value=1.8e-07 Score=92.57 Aligned_cols=76 Identities=24% Similarity=0.308 Sum_probs=60.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCC-----CCccccccEEEEecccccCCCCCCChHHHhhcccc
Q 029354 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACE-----GSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLA 151 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~Cg-----G~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a 151 (194)
|++|++ || +++++++|+|||++++++||.+|+.|. ..|+|+.|.|+|++|.
T Consensus 1 ~~~i~i---dg--~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~v~v~~g~------------------- 56 (847)
T PRK08166 1 MATIHV---DG--KEYEVNGADNLLEACLSLGIDIPYFCWHPALGSVGACRQCAVKQYQNP------------------- 56 (847)
T ss_pred CeEEEE---CC--EEEEeCCCCHHHHHHHHcCCCCCccccCCCCCCCCccCCCeEEEeecC-------------------
Confidence 567776 56 679999999999999999999999996 3699999999997541
Q ss_pred CCCCCCeEEeeeeEEecCCCceEEEcCC
Q 029354 152 FGLTETSRLGCQIVASPELDGIRLAIPA 179 (194)
Q Consensus 152 ~~l~~g~RLaCQ~~~~~dldgl~V~lP~ 179 (194)
.+..++.+++|++.+.. ||+|....
T Consensus 57 ~~~~~~~~~aC~~~v~~---gm~v~t~~ 81 (847)
T PRK08166 57 EDTRGRLVMSCMTPATD---GTFISIDD 81 (847)
T ss_pred ccCCCCcccCcCCCCCC---CCEEEeCC
Confidence 01234678899888776 58998754
No 25
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=98.31 E-value=1.8e-06 Score=80.26 Aligned_cols=60 Identities=20% Similarity=0.453 Sum_probs=48.8
Q ss_pred EEEEeCCCchHHHHHHH------CCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCCCeEEeee
Q 029354 90 KNIKVPVGMSMLEAAHE------NDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTETSRLGCQ 163 (194)
Q Consensus 90 ~~v~v~~GetLLdaa~~------~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~g~RLaCQ 163 (194)
++|.+++|+||||++++ .++..++.|+ .|.||+|.|+| +|+ .+|+||
T Consensus 23 ~~v~~~~~~tvl~al~~~~~~~~~~l~~~~~C~-~g~Cg~C~v~v-~G~-------------------------~~laC~ 75 (486)
T PRK06259 23 YEVPVKEGMTVLDALEYINKTYDANIAFRSSCR-AGQCGSCAVTI-NGE-------------------------PVLACK 75 (486)
T ss_pred EEEeCCCCChHHHHHHHhchhcCCCceecCCCC-CCCCCCCEEEE-CCe-------------------------Eecccc
Confidence 56777799999999995 5566788996 89999999997 552 378999
Q ss_pred eEEecCCCceEEEcCC
Q 029354 164 IVASPELDGIRLAIPA 179 (194)
Q Consensus 164 ~~~~~dldgl~V~lP~ 179 (194)
+.+.++ |+|+.+.
T Consensus 76 ~~~~~~---~~i~~~~ 88 (486)
T PRK06259 76 TEVEDG---MIIEPLD 88 (486)
T ss_pred cCCCCC---CEEEecC
Confidence 999865 8998663
No 26
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=98.11 E-value=4e-06 Score=64.42 Aligned_cols=60 Identities=22% Similarity=0.474 Sum_probs=44.4
Q ss_pred EEEEeCCCchHHHHHHHC------CCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCCCeEEeee
Q 029354 90 KNIKVPVGMSMLEAAHEN------DIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTETSRLGCQ 163 (194)
Q Consensus 90 ~~v~v~~GetLLdaa~~~------gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~g~RLaCQ 163 (194)
++|++.++.|+||++..- -+...++|+ .|.||+|.++| +|. -||||.
T Consensus 21 y~v~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr-~giCGsCam~I-NG~-------------------------~~LAC~ 73 (110)
T PF13085_consen 21 YEVPVEPGMTVLDALNYIKEEQDPSLAFRYSCR-SGICGSCAMRI-NGR-------------------------PRLACK 73 (110)
T ss_dssp EEEEGGSTSBHHHHHHHHHHHT-TT--B--SSS-SSSSSTTEEEE-TTE-------------------------EEEGGG
T ss_pred EEecCCCCCcHHHHHHHHHhccCCCeEEEecCC-CCCCCCCEEEE-CCc-------------------------eeccee
Confidence 688999999999998533 345678997 89999999999 552 289999
Q ss_pred eEEecCCCc----eEEE
Q 029354 164 IVASPELDG----IRLA 176 (194)
Q Consensus 164 ~~~~~dldg----l~V~ 176 (194)
+.+....+. ++|+
T Consensus 74 t~v~~~~~~~~~~i~Ie 90 (110)
T PF13085_consen 74 TQVDDLIEKFGNVITIE 90 (110)
T ss_dssp SBGGGCTTSETBEEEEE
T ss_pred eEchhccCCCcceEEEE
Confidence 999876543 5555
No 27
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=98.07 E-value=9.7e-06 Score=71.30 Aligned_cols=91 Identities=13% Similarity=0.323 Sum_probs=56.6
Q ss_pred CCCCCCCcEEEEEEcCCC--------CEEEEEeCC-CchHHHHHHHCC------CCcccCCCCCccccccEEEEeccccc
Q 029354 70 GSNKQKDMINVTFVDKDG--------EEKNIKVPV-GMSMLEAAHEND------IELEGACEGSLACSTCHVIVMDMDYY 134 (194)
Q Consensus 70 ~~~~~~~~i~Vt~~~~~G--------~~~~v~v~~-GetLLdaa~~~g------I~l~~~CgG~G~CGTC~V~V~~ge~~ 134 (194)
.++++.++++|++.-.++ ++++|++.+ |.||||++..-. +...++|+ .|.||+|.+.| +|.
T Consensus 36 ~~~~~~~~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr-~giCGsCam~I-NG~-- 111 (276)
T PLN00129 36 KGSKPSNLKEFQIYRWNPDNPGKPHLQSYKVDLNDCGPMVLDVLIKIKNEQDPSLTFRRSCR-EGICGSCAMNI-DGK-- 111 (276)
T ss_pred CCCCCCceEEEEEEeeCCCCCCCceeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEeccCC-CCCCCCCeeEE-CCc--
Confidence 456666777776543221 123555544 799999986522 23567997 79999999999 552
Q ss_pred CCCCCCChHHHhhccccCCCCCCeEEeeeeEEecCC-CceEEE-cC--CcccccccC
Q 029354 135 NKLEDPTDEENDMLDLAFGLTETSRLGCQIVASPEL-DGIRLA-IP--AATRNFAVD 187 (194)
Q Consensus 135 ~~l~~~~~~E~~~L~~a~~l~~g~RLaCQ~~~~~dl-dgl~V~-lP--~~~~n~~~~ 187 (194)
-||||++.+.... +.++|+ ++ +..+++.||
T Consensus 112 -----------------------p~LAC~t~v~~~~~~~i~iePl~~fpVirDLvVD 145 (276)
T PLN00129 112 -----------------------NTLACLTKIDRDESGPTTITPLPHMFVIKDLVVD 145 (276)
T ss_pred -----------------------ccccccccHhhcCCCcEEEEECCCCCeeeecccc
Confidence 3788988886543 235554 22 223555555
No 28
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.05 E-value=1.1e-05 Score=78.03 Aligned_cols=73 Identities=23% Similarity=0.407 Sum_probs=56.9
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCC-----CccccccEEEEecccccCCCCCCChHHHhhcc
Q 029354 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEG-----SLACSTCHVIVMDMDYYNKLEDPTDEENDMLD 149 (194)
Q Consensus 75 ~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG-----~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~ 149 (194)
|.+++|+| || +.+++++|+|||+++.++|+.++..|.. .|.|+.|.|.| +|.
T Consensus 1 ~~~v~~~i---dg--~~~~~~~g~ti~~a~~~~g~~ip~~c~~~~~~~~g~C~~C~V~v-~g~----------------- 57 (652)
T PRK12814 1 MNTISLTI---NG--RSVTAAPGTSILEAAASAGITIPTLCFHQELEATGSCWMCIVEI-KGK----------------- 57 (652)
T ss_pred CCeEEEEE---CC--EEEEeCCcCcHHHHHHHcCCccccccCCCCCCCccccceeEEEE-CCC-----------------
Confidence 34677766 57 7899999999999999999999999973 79999999998 441
Q ss_pred ccCCCCCCeEEeeeeEEecCCCceEEEcCC
Q 029354 150 LAFGLTETSRLGCQIVASPELDGIRLAIPA 179 (194)
Q Consensus 150 ~a~~l~~g~RLaCQ~~~~~dldgl~V~lP~ 179 (194)
....+||++.+.. ||+|+...
T Consensus 58 ------~~~~~aC~t~~~~---Gm~v~t~~ 78 (652)
T PRK12814 58 ------NRFVPACSTAVSE---GMVIETEN 78 (652)
T ss_pred ------cceecCcCCCCCC---CCEEEeCc
Confidence 0124588888764 68887643
No 29
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.00 E-value=2.1e-05 Score=70.45 Aligned_cols=41 Identities=17% Similarity=0.443 Sum_probs=35.7
Q ss_pred EEEEEeCCCchHHHHHHHCCCCcc------cCCCCCccccccEEEEecc
Q 029354 89 EKNIKVPVGMSMLEAAHENDIELE------GACEGSLACSTCHVIVMDM 131 (194)
Q Consensus 89 ~~~v~v~~GetLLdaa~~~gI~l~------~~CgG~G~CGTC~V~V~~g 131 (194)
.++|++++|+||||++...+++++ ..|+ .|.||+|.|.| +|
T Consensus 20 ~~~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~-~~~Cg~C~v~i-nG 66 (329)
T PRK12577 20 TYTLEVEPGNTILDCLNRIKWEQDGSLAFRKNCR-NTICGSCAMRI-NG 66 (329)
T ss_pred EEEEECCCCChHHHHHHHhCCcCCCCcEEcCCCC-CCCCCCCEEEE-CC
Confidence 478899999999999999998874 4697 68999999999 54
No 30
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=97.97 E-value=2.2e-05 Score=69.55 Aligned_cols=49 Identities=20% Similarity=0.366 Sum_probs=41.2
Q ss_pred CCcEEEEEEcCCCCEEEEEe-CCCchHHHHHHHCCCCcccCCCC-----CccccccEEEE
Q 029354 75 KDMINVTFVDKDGEEKNIKV-PVGMSMLEAAHENDIELEGACEG-----SLACSTCHVIV 128 (194)
Q Consensus 75 ~~~i~Vt~~~~~G~~~~v~v-~~GetLLdaa~~~gI~l~~~CgG-----~G~CGTC~V~V 128 (194)
...++|++ || ++|++ ++|+||||||+++||.||..|-- .|.|..|.|.|
T Consensus 66 ~~~~~I~I---DG--k~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEV 120 (297)
T PTZ00305 66 KPRAIMFV---NK--RPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQV 120 (297)
T ss_pred CCceEEEE---CC--EEEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEE
Confidence 34555654 57 78999 99999999999999999999862 57899999998
No 31
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=97.96 E-value=1.6e-05 Score=79.05 Aligned_cols=68 Identities=29% Similarity=0.537 Sum_probs=53.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCC-----CCCccccccEEEEecccccCCCCCCChHHHhhcccc
Q 029354 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGAC-----EGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLA 151 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~C-----gG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a 151 (194)
|++|++ || +++++++|+|||++|+++||.+|..| ...|.|+.|.|.| +|.
T Consensus 1 mv~i~I---dG--~~v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV-~G~------------------- 55 (819)
T PRK08493 1 MITITI---NG--KECEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEA-DGK------------------- 55 (819)
T ss_pred CeEEEE---CC--EEEEeCCCCHHHHHHHHcCCccccccccCCCCCCccccceEEEE-CCE-------------------
Confidence 567776 57 78999999999999999999999866 4468999999998 441
Q ss_pred CCCCCCeEEeeeeEEecCCCceEEEcC
Q 029354 152 FGLTETSRLGCQIVASPELDGIRLAIP 178 (194)
Q Consensus 152 ~~l~~g~RLaCQ~~~~~dldgl~V~lP 178 (194)
..+||+..+. |||+|+.-
T Consensus 56 ------~~~AC~t~v~---dGM~V~T~ 73 (819)
T PRK08493 56 ------RVYSCNTKAK---EGMNILTN 73 (819)
T ss_pred ------EeccccCCCC---CCCEEEec
Confidence 0458888885 37888753
No 32
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=97.92 E-value=1.3e-05 Score=68.87 Aligned_cols=41 Identities=15% Similarity=0.453 Sum_probs=33.0
Q ss_pred EEEEEeCCCchHHHHHHHCC------CCcccCCCCCccccccEEEEecc
Q 029354 89 EKNIKVPVGMSMLEAAHEND------IELEGACEGSLACSTCHVIVMDM 131 (194)
Q Consensus 89 ~~~v~v~~GetLLdaa~~~g------I~l~~~CgG~G~CGTC~V~V~~g 131 (194)
+++|++.+|.||||++..-. |...++|+ .|.||+|.+.| +|
T Consensus 25 ~y~v~~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr-~giCGsCam~I-NG 71 (239)
T PRK13552 25 TYQLEETPGMTLFIALNRIREEQDPSLQFDFVCR-AGICGSCAMVI-NG 71 (239)
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCCCeeEeccCC-CCCCCCceeEE-CC
Confidence 46788889999999986542 34567997 89999999999 65
No 33
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=97.90 E-value=2.8e-05 Score=76.88 Aligned_cols=49 Identities=33% Similarity=0.588 Sum_probs=43.9
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCC-----CCccccccEEEE
Q 029354 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACE-----GSLACSTCHVIV 128 (194)
Q Consensus 75 ~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~Cg-----G~G~CGTC~V~V 128 (194)
.+|++|++ || +++++++|+||||++..+||++|+.|. ..|.|.-|.|.|
T Consensus 2 ~~~v~~~i---dg--~~~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev 55 (797)
T PRK07860 2 PDLVTLTI---DG--VEVSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEV 55 (797)
T ss_pred CceEEEEE---CC--EEEEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEE
Confidence 46888876 57 799999999999999999999999995 368999999999
No 34
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=97.83 E-value=2.6e-05 Score=67.48 Aligned_cols=41 Identities=20% Similarity=0.386 Sum_probs=32.5
Q ss_pred EEEEEeCCCchHHHHHHHCC-------------CCcccCCCCCccccccEEEEecc
Q 029354 89 EKNIKVPVGMSMLEAAHEND-------------IELEGACEGSLACSTCHVIVMDM 131 (194)
Q Consensus 89 ~~~v~v~~GetLLdaa~~~g-------------I~l~~~CgG~G~CGTC~V~V~~g 131 (194)
+++|++.+++||||++..-. +...++|+ .|.||+|.++| +|
T Consensus 24 ~y~v~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr-~giCGsCam~I-NG 77 (249)
T PRK08640 24 EFEIPYRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCL-EEVCGACSMVI-NG 77 (249)
T ss_pred EEEecCCCCCcHHHHHHHHHhcccccccccCCCeeEecccC-CCCCCcCeeEE-CC
Confidence 46778889999999986331 34567997 89999999999 65
No 35
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=97.76 E-value=4.1e-05 Score=66.43 Aligned_cols=58 Identities=16% Similarity=0.358 Sum_probs=41.8
Q ss_pred EEEE-eCCCchHHHHHHHC----------CCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCCCe
Q 029354 90 KNIK-VPVGMSMLEAAHEN----------DIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTETS 158 (194)
Q Consensus 90 ~~v~-v~~GetLLdaa~~~----------gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~g~ 158 (194)
++|+ +.+|+||||++..- .+...++|+ .|.||+|.+.| .|. .. +...-
T Consensus 22 y~v~~~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr-~~iCGsCam~I-NG~-------------p~------~~~~~ 80 (250)
T PRK07570 22 YEVDDISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCR-EGICGMCGLVI-NGR-------------PH------GPDRG 80 (250)
T ss_pred EEecCCCCCCcHHHHHHHHHHHhhccCCCCeeEecccc-CCcCCcceeEE-CCc-------------cC------CCCcc
Confidence 5666 56899999998632 255678997 89999999999 652 11 12234
Q ss_pred EEeeeeEEec
Q 029354 159 RLGCQIVASP 168 (194)
Q Consensus 159 RLaCQ~~~~~ 168 (194)
||||++.+..
T Consensus 81 ~LAC~t~~~~ 90 (250)
T PRK07570 81 TTTCQLHMRS 90 (250)
T ss_pred cchhhhhhhh
Confidence 8999988753
No 36
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=97.73 E-value=4.1e-05 Score=65.99 Aligned_cols=55 Identities=13% Similarity=0.290 Sum_probs=38.6
Q ss_pred CCcEEEEEEcCCC--------CEEEEEeCCCchHHHHHHHCC------CCcccCCCCCccccccEEEEecc
Q 029354 75 KDMINVTFVDKDG--------EEKNIKVPVGMSMLEAAHEND------IELEGACEGSLACSTCHVIVMDM 131 (194)
Q Consensus 75 ~~~i~Vt~~~~~G--------~~~~v~v~~GetLLdaa~~~g------I~l~~~CgG~G~CGTC~V~V~~g 131 (194)
|++++|.+.-.++ +.+.+++.+|.|||+++...+ +...+.|+ .|.||+|.|+| +|
T Consensus 4 ~~~v~~~i~R~~~~~~~~~~~~~~~v~~~~~~tvl~~L~~ik~~~d~~l~fr~~C~-~giCGsC~v~I-nG 72 (244)
T PRK12385 4 MKNLKIEVLRYNPEVDTEPHSQTYEVPYDETTSLLDALGYIKDNLAPDLSYRWSCR-MAICGSCGMMV-NN 72 (244)
T ss_pred CcEEEEEEEeeCCCCCCCceeEEEEeeCCCCCcHHHHHHHHHHhcCCCceeccCCC-CCcCCCCcceE-Cc
Confidence 5566666542221 246677889999999995532 33457897 79999999999 54
No 37
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=97.72 E-value=0.00012 Score=59.70 Aligned_cols=50 Identities=20% Similarity=0.419 Sum_probs=42.0
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHCCC-CcccCCCCCccccccEEEEecc
Q 029354 79 NVTFVDKDGEEKNIKVPVGMSMLEAAHENDI-ELEGACEGSLACSTCHVIVMDM 131 (194)
Q Consensus 79 ~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI-~l~~~CgG~G~CGTC~V~V~~g 131 (194)
.|+|. -+|+.+++++.++++||+.+++.|+ .....|+ .|.||.|.|.| +|
T Consensus 8 ~i~~~-vNG~~~~~~~~~~~~Ll~~LR~~gltgtK~GC~-~G~CGACtVlv-dg 58 (159)
T PRK09908 8 TIECT-INGMPFQLHAAPGTPLSELLREQGLLSVKQGCC-VGECGACTVLV-DG 58 (159)
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHHcCCCCCCCCcC-CCCCCCcEEEE-CC
Confidence 35444 2688899999999999999999887 4778996 79999999999 65
No 38
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=97.69 E-value=8.5e-05 Score=64.52 Aligned_cols=41 Identities=17% Similarity=0.420 Sum_probs=34.6
Q ss_pred EEEEEeCCCchHHHHHHHCCC------CcccCCCCCccccccEEEEecc
Q 029354 89 EKNIKVPVGMSMLEAAHENDI------ELEGACEGSLACSTCHVIVMDM 131 (194)
Q Consensus 89 ~~~v~v~~GetLLdaa~~~gI------~l~~~CgG~G~CGTC~V~V~~g 131 (194)
.++|++.+++||||+++.-+. ...+.|+ .|.||+|.|.| +|
T Consensus 21 ~y~v~~~~~~tvLd~L~~i~~~~d~~l~~r~~C~-~g~CGsCa~~I-nG 67 (251)
T PRK12386 21 DYTVEVNEGEVVLDVIHRLQATQAPDLAVRWNCK-AGKCGSCSAEI-NG 67 (251)
T ss_pred EEEEeCCCCCCHHHHHHHhccccCCCCcccCCCC-CCcCCCCEEEE-Cc
Confidence 478888999999999998654 3567996 89999999999 65
No 39
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=97.68 E-value=9.7e-05 Score=72.59 Aligned_cols=47 Identities=34% Similarity=0.644 Sum_probs=41.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCC-----CccccccEEEE
Q 029354 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEG-----SLACSTCHVIV 128 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG-----~G~CGTC~V~V 128 (194)
|++|++ || +++++++|+|||++++.+||.+|+.|.- .|.|.-|.|.|
T Consensus 1 m~~~~i---dg--~~~~~~~g~~il~a~~~~g~~ip~~c~~~~~~~~~~C~~C~v~v 52 (776)
T PRK09129 1 MVEIEI---DG--KKVEVPEGSMVIEAADKAGIYIPRFCYHKKLSIAANCRMCLVEV 52 (776)
T ss_pred CeEEEE---CC--EEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCCCcceeEEEE
Confidence 677775 57 7899999999999999999999999973 47899999998
No 40
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=97.65 E-value=9.8e-05 Score=72.08 Aligned_cols=48 Identities=33% Similarity=0.583 Sum_probs=42.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCC-----CCccccccEEEEe
Q 029354 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACE-----GSLACSTCHVIVM 129 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~Cg-----G~G~CGTC~V~V~ 129 (194)
|++|++ || +++++++|+|||||+.++||+||..|- -.|.|..|.|.|.
T Consensus 1 m~~~~I---dg--~~v~v~~g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~ 53 (687)
T PRK09130 1 MVKLKV---DG--KEIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVK 53 (687)
T ss_pred CeEEEE---CC--EEEEeCCCCHHHHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEEC
Confidence 677876 57 799999999999999999999999995 3689999999993
No 41
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.63 E-value=0.00019 Score=63.07 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=34.5
Q ss_pred EEEEEeCCCchHHHHHHHCCCCc------ccCCCCCccccccEEEEecc
Q 029354 89 EKNIKVPVGMSMLEAAHENDIEL------EGACEGSLACSTCHVIVMDM 131 (194)
Q Consensus 89 ~~~v~v~~GetLLdaa~~~gI~l------~~~CgG~G~CGTC~V~V~~g 131 (194)
.++|++.+|+||||++...+..+ ...|+ .|.||.|.|.| +|
T Consensus 26 ~~~v~~~~~~tvLd~L~~i~~~~d~tl~~~~~C~-~G~CgsC~v~I-NG 72 (279)
T PRK12576 26 EYKVKVDRFTQVTEALRRIKEEQDPTLSYRASCH-MAVCGSCGMKI-NG 72 (279)
T ss_pred EEEEecCCCCHHHHHHHHhCCccCCCceecCCCC-CCCCCCCEEEE-CC
Confidence 47889999999999999976543 36895 89999999999 54
No 42
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=97.60 E-value=0.00013 Score=69.88 Aligned_cols=64 Identities=28% Similarity=0.507 Sum_probs=50.8
Q ss_pred CCCEEEEEeCCCchHHHHHHHCCCCcccCCC-----CCccccccEEEEecccccCCCCCCChHHHhhccccCCCCCCeEE
Q 029354 86 DGEEKNIKVPVGMSMLEAAHENDIELEGACE-----GSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTETSRL 160 (194)
Q Consensus 86 ~G~~~~v~v~~GetLLdaa~~~gI~l~~~Cg-----G~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~g~RL 160 (194)
|| +++++++|+|||++|+++||++|+.|. ..|+|..|.|.| +|.. . ....
T Consensus 4 dg--~~~~~~~g~~il~a~~~~gi~ip~~C~~~~l~~~g~Cr~C~v~v-~g~~------------~----------~~~~ 58 (603)
T TIGR01973 4 DG--KELEVPKGTTVLQACLSAGIEIPRFCYHEKLSIAGNCRMCLVEV-EKFP------------D----------KPVA 58 (603)
T ss_pred CC--EEEEeCCCCHHHHHHHHcCCCccccCCCCCCCCCCccccCEEEE-CCCC------------C----------Cccc
Confidence 57 799999999999999999999999995 369999999999 4310 0 1134
Q ss_pred eeeeEEecCCCceEEEc
Q 029354 161 GCQIVASPELDGIRLAI 177 (194)
Q Consensus 161 aCQ~~~~~dldgl~V~l 177 (194)
||++.+.. ||+|..
T Consensus 59 aC~~~~~~---gm~v~t 72 (603)
T TIGR01973 59 SCATPVTD---GMKIST 72 (603)
T ss_pred ccCCCCCC---CCEEEe
Confidence 88888775 588865
No 43
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=97.50 E-value=8.5e-05 Score=62.73 Aligned_cols=41 Identities=20% Similarity=0.448 Sum_probs=33.3
Q ss_pred EEEEEeCCCchHHHHHHHCC------CCcccCCCCCccccccEEEEecc
Q 029354 89 EKNIKVPVGMSMLEAAHEND------IELEGACEGSLACSTCHVIVMDM 131 (194)
Q Consensus 89 ~~~v~v~~GetLLdaa~~~g------I~l~~~CgG~G~CGTC~V~V~~g 131 (194)
.+++++.+|+|||+++...+ +.....|+ .|.||+|.|+| +|
T Consensus 16 ~~~v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~-~g~Cg~C~v~v-nG 62 (220)
T TIGR00384 16 SYEVPADEGMTVLDALNYIKDEQDPSLAFRRSCR-NGICGSCAMNV-NG 62 (220)
T ss_pred EEEEeCCCCCcHHHHHHHHHHhcCCCceeecccC-CCCCCCCeeEE-CC
Confidence 36788889999999998855 23457896 79999999998 54
No 44
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=97.46 E-value=0.0002 Score=69.98 Aligned_cols=47 Identities=43% Similarity=0.728 Sum_probs=41.3
Q ss_pred cEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCC-----CCCccccccEEEE
Q 029354 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGAC-----EGSLACSTCHVIV 128 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~C-----gG~G~CGTC~V~V 128 (194)
|++|++ || +++++++|+|||+||+++||+||+.| +-.|+|.-|.|.+
T Consensus 1 m~tI~I---DG--~ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEv 52 (693)
T COG1034 1 MVTITI---DG--KEIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEV 52 (693)
T ss_pred CeEEEE---CC--EEEecCCCcHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEe
Confidence 677776 57 89999999999999999999999876 3458999999999
No 45
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=97.44 E-value=0.00023 Score=61.32 Aligned_cols=40 Identities=18% Similarity=0.415 Sum_probs=31.5
Q ss_pred EEEEeCCCchHHHHHHHCC------CCcccCCCCCccccccEEEEecc
Q 029354 90 KNIKVPVGMSMLEAAHEND------IELEGACEGSLACSTCHVIVMDM 131 (194)
Q Consensus 90 ~~v~v~~GetLLdaa~~~g------I~l~~~CgG~G~CGTC~V~V~~g 131 (194)
++|+..+|+||||++..-. +....+|+ .|.||+|.+.| .|
T Consensus 22 yev~~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR-~gICGSCam~I-NG 67 (234)
T COG0479 22 YEVPYDEGMTVLDALLYIKEEQDPTLSFRRSCR-EGICGSCAMNI-NG 67 (234)
T ss_pred EEecCCCCCcHHHHHHHHHHhcCCccchhhhcc-CCcCCcceeEE-CC
Confidence 5677779999999985432 34567998 79999999999 55
No 46
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=97.36 E-value=0.00057 Score=58.30 Aligned_cols=50 Identities=24% Similarity=0.542 Sum_probs=39.7
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHC-CC-CcccCCCCCccccccEEEEecc
Q 029354 79 NVTFVDKDGEEKNIKVPVGMSMLEAAHEN-DI-ELEGACEGSLACSTCHVIVMDM 131 (194)
Q Consensus 79 ~Vt~~~~~G~~~~v~v~~GetLLdaa~~~-gI-~l~~~CgG~G~CGTC~V~V~~g 131 (194)
+|+|. -+|+.+++++.++++||++++++ ++ .....|+ .|.||.|.|.| +|
T Consensus 51 ~i~~~-VNG~~~~~~v~~~~tLLd~LR~~l~ltGtK~GC~-~G~CGACTVlV-dG 102 (217)
T PRK11433 51 PVTLK-VNGKTEQLEVDTRTTLLDALREHLHLTGTKKGCD-HGQCGACTVLV-NG 102 (217)
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHHhcCCCCCCCCCC-CCCcCceEEEE-CC
Confidence 34443 26888889999999999999985 44 3677896 79999999976 65
No 47
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=97.36 E-value=0.00051 Score=55.41 Aligned_cols=44 Identities=20% Similarity=0.468 Sum_probs=38.1
Q ss_pred CCCEEEEEeCCCchHHHHHHHC-CC-CcccCCCCCccccccEEEEecc
Q 029354 86 DGEEKNIKVPVGMSMLEAAHEN-DI-ELEGACEGSLACSTCHVIVMDM 131 (194)
Q Consensus 86 ~G~~~~v~v~~GetLLdaa~~~-gI-~l~~~CgG~G~CGTC~V~V~~g 131 (194)
+|+.++++++++++|||++++. |+ .....|+ .|.||.|-|.| +|
T Consensus 7 NG~~~~~~~~~~~~Ll~~LR~~lgltg~K~gC~-~G~CGACtVlv-dg 52 (148)
T TIGR03193 7 NGRWREDAVADNMLLVDYLRDTVGLTGTKQGCD-GGECGACTVLV-DG 52 (148)
T ss_pred CCEEEEeecCCCCcHHHHHHHhcCCCCCCCCCC-CCCCCCCEEEE-CC
Confidence 5888899999999999999985 65 3678996 89999999999 65
No 48
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=97.25 E-value=0.00048 Score=67.78 Aligned_cols=52 Identities=40% Similarity=0.658 Sum_probs=44.6
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCC-----CCccccccEEEEeccc
Q 029354 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACE-----GSLACSTCHVIVMDMD 132 (194)
Q Consensus 75 ~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~Cg-----G~G~CGTC~V~V~~ge 132 (194)
..|++|++ || +.+.+++|+|||+++.++||++|+.|- --++|-+|.|.+ +|.
T Consensus 3 ~~~i~vti---dg--~~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVEi-dG~ 59 (978)
T COG3383 3 EKMITVTI---DG--RSIEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVEI-DGK 59 (978)
T ss_pred ceeEEEEE---CC--eEEecCCChHHHHHHHhcCCcccceeccCCCCcccccceEEEEe-cCc
Confidence 35788876 57 789999999999999999999999995 247999999998 664
No 49
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.16 E-value=0.00076 Score=57.99 Aligned_cols=71 Identities=17% Similarity=0.284 Sum_probs=46.0
Q ss_pred EEEEeCC-CchHHHHHHHCC-----CCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCCCeEEeee
Q 029354 90 KNIKVPV-GMSMLEAAHEND-----IELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTETSRLGCQ 163 (194)
Q Consensus 90 ~~v~v~~-GetLLdaa~~~g-----I~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~g~RLaCQ 163 (194)
++|++.+ +.||||++..-. +...++|+ .|.||+|.+.| +|. -||||+
T Consensus 25 y~v~~~~~~~tvld~L~~ik~~d~~l~fr~sCr-~giCGsCa~~i-NG~-------------------------~~LaC~ 77 (235)
T PRK12575 25 YEIAPRAEDRMLLDVLGRVKAQDETLSYRRSCR-EGICGSDAMNI-NGR-------------------------NGLACL 77 (235)
T ss_pred EEecCCCCCCcHHHHHHHHHhcCCCeeeeccCC-CCCCCCCeeEE-CCe-------------------------Ecchhh
Confidence 4455544 468999986532 23457897 89999999999 551 478998
Q ss_pred eEEecCCCceEEE-cC--CcccccccC
Q 029354 164 IVASPELDGIRLA-IP--AATRNFAVD 187 (194)
Q Consensus 164 ~~~~~dldgl~V~-lP--~~~~n~~~~ 187 (194)
+.+.+--++++|+ ++ +..+++.||
T Consensus 78 t~~~~~~~~i~iePl~~~pvikDLvvD 104 (235)
T PRK12575 78 TNMQALPREIVLRPLPGLPVVRDLIVD 104 (235)
T ss_pred CcHhHcCCCEEEeECCCCCccccceec
Confidence 8886422356665 22 224555555
No 50
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=97.15 E-value=0.0013 Score=53.12 Aligned_cols=50 Identities=14% Similarity=0.344 Sum_probs=40.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCchHHHHHHHC-CCC-cccCCCCCccccccEEEEecc
Q 029354 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHEN-DIE-LEGACEGSLACSTCHVIVMDM 131 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~-gI~-l~~~CgG~G~CGTC~V~V~~g 131 (194)
.+++++ +|+.+++.+.++++|++.+++. ++. ....|+ .|.||.|.|.| +|
T Consensus 3 ~i~f~v---NG~~~~~~~~~~~~Ll~~LR~~~~ltgtK~gC~-~G~CGACtVlv-dG 54 (151)
T TIGR03198 3 QFRFTV---NGQAWEVAAVPTTRLSDLLRKELQLTGTKVSCG-IGRCGACSVLI-DG 54 (151)
T ss_pred cEEEEE---CCEEEEeecCCCcHHHHHHHhccCCCCCCCCCC-CCcCCccEEEE-CC
Confidence 345554 6888899999999999999985 764 677896 79999999999 65
No 51
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=96.90 E-value=0.0034 Score=51.03 Aligned_cols=51 Identities=24% Similarity=0.513 Sum_probs=41.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCchHHHHHHHC-CCC-cccCCCCCccccccEEEEeccc
Q 029354 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHEN-DIE-LEGACEGSLACSTCHVIVMDMD 132 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~-gI~-l~~~CgG~G~CGTC~V~V~~ge 132 (194)
++++++ +|+.+++++.++++|++++++. ++. ....|+ .|.||.|-|.| +|+
T Consensus 3 ~i~ltv---NG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~-~g~CGACtVlv-DG~ 55 (156)
T COG2080 3 PITLTV---NGEPVELDVDPRTPLLDVLRDELGLTGTKKGCG-HGQCGACTVLV-DGE 55 (156)
T ss_pred cEEEEE---CCeEEEEEeCCCChHHHHHHHhcCCCCcCCCCC-CccCCceEEEE-CCe
Confidence 344544 6888999999999999999855 453 667895 99999999999 764
No 52
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=96.74 E-value=0.0032 Score=53.64 Aligned_cols=41 Identities=15% Similarity=0.188 Sum_probs=33.9
Q ss_pred EEEEEeC-CCchHHHHHHHCC-CCc-----ccCCCCCccccccEEEEecc
Q 029354 89 EKNIKVP-VGMSMLEAAHEND-IEL-----EGACEGSLACSTCHVIVMDM 131 (194)
Q Consensus 89 ~~~v~v~-~GetLLdaa~~~g-I~l-----~~~CgG~G~CGTC~V~V~~g 131 (194)
.++|+++ +|+|||+++...+ ..+ ...|+ .|.||+|.|.| +|
T Consensus 19 ~~~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~-~g~Cg~C~v~v-nG 66 (232)
T PRK05950 19 TYEVDVDECGPMVLDALIKIKNEIDPTLTFRRSCR-EGVCGSDAMNI-NG 66 (232)
T ss_pred EEEeCCCCCCCHHHHHHHHhCCccCCcceeeCCCC-CCCCCCCEEEE-CC
Confidence 3678888 9999999999997 332 46895 79999999999 55
No 53
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=95.76 E-value=0.021 Score=58.04 Aligned_cols=45 Identities=11% Similarity=0.186 Sum_probs=36.6
Q ss_pred CCCEEEEEeCCCchHHHHHHHCCCC-cccCCCCCccccccEEEEecc
Q 029354 86 DGEEKNIKVPVGMSMLEAAHENDIE-LEGACEGSLACSTCHVIVMDM 131 (194)
Q Consensus 86 ~G~~~~v~v~~GetLLdaa~~~gI~-l~~~CgG~G~CGTC~V~V~~g 131 (194)
+|+.+++.+.++++||+.+++.|+- ....|-+.|.||.|-|.| +|
T Consensus 8 Ng~~~~~~~~~~~~l~~~LR~~~~~~~k~g~c~~g~CGaCtv~~-dg 53 (956)
T PRK09800 8 NGAPQELTVNPGENVQKLLFNMGMHSVRNSDDGFGFAGSDAIIF-NG 53 (956)
T ss_pred CCEEEEEecCCCCCHHHHHHHCCCCccccCCCCcccCCCCEEEE-CC
Confidence 6888999999999999999996654 334433589999999999 65
No 54
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=95.22 E-value=0.032 Score=52.46 Aligned_cols=43 Identities=23% Similarity=0.512 Sum_probs=37.0
Q ss_pred CCCEEEE-EeCCCchHHHHHHHC-CCC-cccCCCCCccccccEEEEe
Q 029354 86 DGEEKNI-KVPVGMSMLEAAHEN-DIE-LEGACEGSLACSTCHVIVM 129 (194)
Q Consensus 86 ~G~~~~v-~v~~GetLLdaa~~~-gI~-l~~~CgG~G~CGTC~V~V~ 129 (194)
+|+.+++ ++.++++||+.++++ |+. ....|+ .|.||.|-|.|.
T Consensus 6 Ng~~~~~~~~~~~~~ll~~lR~~~~l~g~k~gC~-~G~CGaCtv~~~ 51 (467)
T TIGR02963 6 NGETVTLSDVDPTRTLLDYLREDAGLTGTKEGCA-EGDCGACTVVVG 51 (467)
T ss_pred CCEEEEeecCCCCCCHHHHHHHhcCCCCCCcccC-CCCCCceEEEEE
Confidence 5878888 699999999999975 764 778996 799999999994
No 55
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=95.20 E-value=0.03 Score=56.88 Aligned_cols=44 Identities=5% Similarity=0.093 Sum_probs=37.4
Q ss_pred CCCEEEEEeCCCchHHHHHHHCCCC-ccc-CCCCCccccccEEEEecc
Q 029354 86 DGEEKNIKVPVGMSMLEAAHENDIE-LEG-ACEGSLACSTCHVIVMDM 131 (194)
Q Consensus 86 ~G~~~~v~v~~GetLLdaa~~~gI~-l~~-~CgG~G~CGTC~V~V~~g 131 (194)
+|+.+++.+.++++||+.+++.|+. ... .|+ .|.||.|-|.| +|
T Consensus 4 Ng~~~~~~~~~~~~l~~~LR~~~l~~~k~~~c~-~g~CGaCtv~~-dg 49 (951)
T TIGR03313 4 NGAPQTLECKLGENVQTLLFNMGMHSVRNSDDG-FGFAGSDAILF-NG 49 (951)
T ss_pred CCEEEEEecCCCCCHHHHHHHCCCCCCcCCCCC-cccCCCCEEEE-CC
Confidence 5888899999999999999998774 554 574 89999999999 66
No 56
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.30 E-value=0.22 Score=50.72 Aligned_cols=76 Identities=17% Similarity=0.124 Sum_probs=53.1
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcc-----------cCCCCCccccccEEEEecccccCCCCCCCh
Q 029354 74 QKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELE-----------GACEGSLACSTCHVIVMDMDYYNKLEDPTD 142 (194)
Q Consensus 74 ~~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~-----------~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~ 142 (194)
....++++| || +.+++.+|+||.-|++.+|+.+- ..|. .+.|-.|.|.| +|..
T Consensus 9 ~~~~~~~~~---dg--~~~~~~~g~t~a~al~a~g~~~~~~s~~~~~prg~~c~-~~~~~~c~v~i-~~~~--------- 72 (985)
T TIGR01372 9 RSRPLRFTF---DG--KSYSGFAGDTLASALLANGVHLVGRSFKYHRPRGILTA-GVEEPNALVTV-GSGA--------- 72 (985)
T ss_pred CCCeEEEEE---CC--EEeecCCCCHHHHHHHhCCCeeecccCCCCCCCccccc-CccCCCeEEEE-CCCc---------
Confidence 344566665 67 78999999999999999998542 1485 57899999999 5310
Q ss_pred HHHhhccccCCCCCCeEEeeeeEEecCCCceEEEcCC
Q 029354 143 EENDMLDLAFGLTETSRLGCQIVASPELDGIRLAIPA 179 (194)
Q Consensus 143 ~E~~~L~~a~~l~~g~RLaCQ~~~~~dldgl~V~lP~ 179 (194)
.......||++.+.. ||+|+-..
T Consensus 73 -----------~~~~~~~ac~~~~~~---gm~~~~~~ 95 (985)
T TIGR01372 73 -----------QREPNTRATTQELYD---GLVATSQN 95 (985)
T ss_pred -----------CCCCCccceeEEccc---CCEEeccc
Confidence 011123488888875 58887543
No 57
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=94.11 E-value=0.097 Score=52.63 Aligned_cols=42 Identities=29% Similarity=0.600 Sum_probs=35.6
Q ss_pred CCCEEEEEeCCCchHHHHHHHC-CC-CcccCCCCCccccccEEEEecc
Q 029354 86 DGEEKNIKVPVGMSMLEAAHEN-DI-ELEGACEGSLACSTCHVIVMDM 131 (194)
Q Consensus 86 ~G~~~~v~v~~GetLLdaa~~~-gI-~l~~~CgG~G~CGTC~V~V~~g 131 (194)
+| ..+++.++++||+.+++. |+ .....|+ .|.||.|.|.| +|
T Consensus 6 ng--~~~~~~~~~~l~~~lr~~~~~~~~k~gc~-~g~cgactv~~-dg 49 (848)
T TIGR03311 6 NG--REVDVNEEKKLLEFLREDLRLTGVKNGCG-EGACGACTVIV-NG 49 (848)
T ss_pred CC--EEeeCCCCCcHHHHHHHhcCCCcCCCCCC-CCCCCCcEEEE-CC
Confidence 46 478899999999999975 76 4778996 89999999999 65
No 58
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=92.75 E-value=0.26 Score=47.35 Aligned_cols=50 Identities=28% Similarity=0.507 Sum_probs=41.7
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCC-----CccccccEEEEe
Q 029354 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEG-----SLACSTCHVIVM 129 (194)
Q Consensus 75 ~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG-----~G~CGTC~V~V~ 129 (194)
.+.|.| |+ || +.|.+++|.|+|+++...|++||-.|-- .|.|--|.|.|.
T Consensus 30 ~~~iev-fv--d~--~~v~v~pg~tvlqac~~~gv~iprfcyh~rlsvagncrmclveve 84 (708)
T KOG2282|consen 30 PNKIEV-FV--DD--QSVMVEPGTTVLQACAKVGVDIPRFCYHERLSVAGNCRMCLVEVE 84 (708)
T ss_pred ccceEE-EE--CC--eeEeeCCCcHHHHHHHHhCCCcchhhhhhhhhhccceeEEEEEec
Confidence 677777 44 35 7899999999999999999999999963 378888888884
No 59
>PLN00192 aldehyde oxidase
Probab=92.34 E-value=0.27 Score=51.86 Aligned_cols=48 Identities=19% Similarity=0.426 Sum_probs=38.8
Q ss_pred cEEEEEEcCCCCEEEE-EeCCCchHHHHHHHC-CCC-cccCCCCCccccccEEEE
Q 029354 77 MINVTFVDKDGEEKNI-KVPVGMSMLEAAHEN-DIE-LEGACEGSLACSTCHVIV 128 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v-~v~~GetLLdaa~~~-gI~-l~~~CgG~G~CGTC~V~V 128 (194)
++++++ +|+.+++ .+.++++||+.++++ |+. ....|+ .|.||.|-|.|
T Consensus 5 ~i~~~v---Ng~~~~~~~~~p~~~Ll~~LR~~~~ltgtK~gC~-~G~CGaCtV~v 55 (1344)
T PLN00192 5 SLVFAV---NGERFELSSVDPSTTLLEFLRTQTPFKSVKLGCG-EGGCGACVVLL 55 (1344)
T ss_pred eEEEEE---CCEEEEeccCCCCCcHHHHHHHhhCCCCcCCCCC-CCcCCCcEEEE
Confidence 344443 5877888 699999999999976 663 677995 89999999999
No 60
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=91.05 E-value=0.36 Score=50.88 Aligned_cols=42 Identities=17% Similarity=0.403 Sum_probs=34.9
Q ss_pred CCCEE-EEEeCCCchHHHHHHHC-CCC-cccCCCCCccccccEEEE
Q 029354 86 DGEEK-NIKVPVGMSMLEAAHEN-DIE-LEGACEGSLACSTCHVIV 128 (194)
Q Consensus 86 ~G~~~-~v~v~~GetLLdaa~~~-gI~-l~~~CgG~G~CGTC~V~V 128 (194)
+|+.+ ...+.++++||+.++++ |+. ....|+ .|.||.|-|.|
T Consensus 8 Ng~~~~~~~~~~~~~ll~~LR~~~~l~gtk~gC~-~G~CGaCtV~~ 52 (1330)
T TIGR02969 8 NGRKVVEKNVDPETMLLPYLRKKLRLTGTKYGCG-GGGCGACTVMI 52 (1330)
T ss_pred CCEEEEeccCCCCCcHHHHHHhhcCCCCCCCCcC-CCCCCCcEEEE
Confidence 57664 45899999999999975 663 677996 79999999999
No 61
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=74.17 E-value=6.9 Score=27.71 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=20.1
Q ss_pred EcCCCCEEEEEeCCCchHHHHHHH
Q 029354 83 VDKDGEEKNIKVPVGMSMLEAAHE 106 (194)
Q Consensus 83 ~~~~G~~~~v~v~~GetLLdaa~~ 106 (194)
.-++|+...|.+.+|+|+.|++..
T Consensus 5 ~LPng~~t~V~vrpg~ti~d~L~~ 28 (72)
T cd01760 5 YLPNGQRTVVPVRPGMSVRDVLAK 28 (72)
T ss_pred ECcCCCeEEEEECCCCCHHHHHHH
Confidence 347899999999999999998643
No 62
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=69.31 E-value=7.9 Score=33.62 Aligned_cols=38 Identities=18% Similarity=0.408 Sum_probs=27.2
Q ss_pred EEEEeCC-CchHHHHHHHCCCCc------ccCCCCCccccccEEEE
Q 029354 90 KNIKVPV-GMSMLEAAHENDIEL------EGACEGSLACSTCHVIV 128 (194)
Q Consensus 90 ~~v~v~~-GetLLdaa~~~gI~l------~~~CgG~G~CGTC~V~V 128 (194)
++|+... |--+|||+..-.-++ .-+|+ .|.||+|..-|
T Consensus 68 y~vDL~~CGpMvLDALiKIKnE~DptLTFRRSCR-EGICGSCAMNI 112 (288)
T KOG3049|consen 68 YEVDLNDCGPMVLDALIKIKNEMDPTLTFRRSCR-EGICGSCAMNI 112 (288)
T ss_pred eeecHHhcchHHHHHHHHhhcccCCceehhhhhh-ccccccceecc
Confidence 4455543 778999986544332 34897 79999999998
No 63
>smart00455 RBD Raf-like Ras-binding domain.
Probab=68.95 E-value=11 Score=26.33 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.3
Q ss_pred cCCCCEEEEEeCCCchHHHHHH
Q 029354 84 DKDGEEKNIKVPVGMSMLEAAH 105 (194)
Q Consensus 84 ~~~G~~~~v~v~~GetLLdaa~ 105 (194)
-++|+...|.+++|+||.|++.
T Consensus 6 LP~~~~~~V~vrpg~tl~e~L~ 27 (70)
T smart00455 6 LPDNQRTVVKVRPGKTVRDALA 27 (70)
T ss_pred CCCCCEEEEEECCCCCHHHHHH
Confidence 4789999999999999999864
No 64
>PRK01777 hypothetical protein; Validated
Probab=66.37 E-value=15 Score=27.36 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=26.9
Q ss_pred CCcEEEEEEc--CCC-CEEEEEeCCCchHHHHHHHCCCCcc
Q 029354 75 KDMINVTFVD--KDG-EEKNIKVPVGMSMLEAAHENDIELE 112 (194)
Q Consensus 75 ~~~i~Vt~~~--~~G-~~~~v~v~~GetLLdaa~~~gI~l~ 112 (194)
|+|++|++.- ++. ...++++++|.|+-|++...||...
T Consensus 1 ~~~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~sgi~~~ 41 (95)
T PRK01777 1 MGKIRVEVVYALPERQYLQRLTLQEGATVEEAIRASGLLEL 41 (95)
T ss_pred CCeeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHcCCCcc
Confidence 3466666543 222 1257899999999999999999644
No 65
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=65.24 E-value=16 Score=34.31 Aligned_cols=48 Identities=23% Similarity=0.593 Sum_probs=34.8
Q ss_pred EEEEEcCCCCEEEE-EeCCCchHHHHHH-HCCCC-cccCCCCCccccccEEEE
Q 029354 79 NVTFVDKDGEEKNI-KVPVGMSMLEAAH-ENDIE-LEGACEGSLACSTCHVIV 128 (194)
Q Consensus 79 ~Vt~~~~~G~~~~v-~v~~GetLLdaa~-~~gI~-l~~~CgG~G~CGTC~V~V 128 (194)
+|.|+- +|+...+ .+.+.+||||-++ +.++- -.-.|. .|-||.|.|.|
T Consensus 8 ~irf~l-N~~~~~l~~v~P~~TlLd~LR~d~~ltGtKEGCA-EGDCGACTVlV 58 (493)
T COG4630 8 TIRFLL-NGETRVLSDVPPTTTLLDYLRLDRRLTGTKEGCA-EGDCGACTVLV 58 (493)
T ss_pred eeEEEe-cCceEEeecCCcchHHHHHHHHhccccccccccc-CCCcCceEEEE
Confidence 444442 4555444 7889999999998 55663 445795 89999999988
No 66
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=64.94 E-value=6.1 Score=33.35 Aligned_cols=32 Identities=31% Similarity=0.392 Sum_probs=23.8
Q ss_pred hHHHHHHHCCCCcc------cCCCCCccccccEEEEecc
Q 029354 99 SMLEAAHENDIELE------GACEGSLACSTCHVIVMDM 131 (194)
Q Consensus 99 tLLdaa~~~gI~l~------~~CgG~G~CGTC~V~V~~g 131 (194)
.+.+++++.|++.. ..|+ .|.||.|.+...+.
T Consensus 194 ~~~~~L~~~Gv~~~~~~~~~~~~~-~g~c~~c~~~~~~~ 231 (246)
T cd06218 194 AVAELAAERGVPCQVSLEERMACG-IGACLGCVVKTKDD 231 (246)
T ss_pred HHHHHHHhcCCCEEEEecccccCc-cceecccEEEeecC
Confidence 56666788888632 3684 89999999998653
No 67
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=62.85 E-value=15 Score=25.63 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHHH
Q 029354 78 INVTFVDKDGEEKNIKVPVGMSMLEAAHE 106 (194)
Q Consensus 78 i~Vt~~~~~G~~~~v~v~~GetLLdaa~~ 106 (194)
+.|.+ |+|+...|.+++|+|+-|++..
T Consensus 3 ~~v~L--P~~q~t~V~vrpg~ti~d~L~~ 29 (71)
T PF02196_consen 3 CRVHL--PNGQRTVVQVRPGMTIRDALSK 29 (71)
T ss_dssp EEEEE--TTTEEEEEEE-TTSBHHHHHHH
T ss_pred EEEEC--CCCCEEEEEEcCCCCHHHHHHH
Confidence 34544 8898889999999999998644
No 68
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=61.04 E-value=6.5 Score=32.77 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=21.9
Q ss_pred hHHHHHHHCCCCc------ccCCCCCccccccEEEE
Q 029354 99 SMLEAAHENDIEL------EGACEGSLACSTCHVIV 128 (194)
Q Consensus 99 tLLdaa~~~gI~l------~~~CgG~G~CGTC~V~V 128 (194)
.+.+++.+.|++. ...|| .|.|+.|.|..
T Consensus 181 ~~~~~L~~~g~~~~i~~e~f~~cg-~g~C~~C~v~~ 215 (233)
T cd06220 181 KVLEILDERGVRAQFSLERYMKCG-IGICGSCCIDP 215 (233)
T ss_pred HHHHHHHhcCCcEEEEecccccCc-CCCcCccEecc
Confidence 5667778888742 24785 99999999996
No 69
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=60.37 E-value=20 Score=24.69 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=27.3
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCc
Q 029354 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIEL 111 (194)
Q Consensus 75 ~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l 111 (194)
+.|++|++..+ +...+++++.|.|+.|.+..-+++.
T Consensus 2 ~~mm~v~vng~-~~~~~~~~~~~~tv~~ll~~l~~~~ 37 (70)
T PRK08364 2 MLMIRVKVIGR-GIEKEIEWRKGMKVADILRAVGFNT 37 (70)
T ss_pred ceEEEEEEecc-ccceEEEcCCCCcHHHHHHHcCCCC
Confidence 56788888532 2246788899999999999888753
No 70
>PLN02906 xanthine dehydrogenase
Probab=59.67 E-value=9.7 Score=40.44 Aligned_cols=31 Identities=23% Similarity=0.487 Sum_probs=25.8
Q ss_pred CchHHHHHHHCCCC-cccCCCCCccccccEEEE
Q 029354 97 GMSMLEAAHENDIE-LEGACEGSLACSTCHVIV 128 (194)
Q Consensus 97 GetLLdaa~~~gI~-l~~~CgG~G~CGTC~V~V 128 (194)
.++||+.+++.|+. ....|+ .|.||.|.|.|
T Consensus 1 ~~~ll~~LR~~~l~g~k~gC~-~g~CGaCtv~~ 32 (1319)
T PLN02906 1 HQTLLEYLRDLGLTGTKLGCG-EGGCGACTVMV 32 (1319)
T ss_pred CCcHHHHHHhCCCCCCCCCcC-CCCCCCeEEEE
Confidence 36899999986653 667896 79999999999
No 71
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=59.35 E-value=22 Score=24.90 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 77 MINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
|++|+|.+..|+...+++++.+|+.+.
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~L 27 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDL 27 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHH
Confidence 678999988898888999999999876
No 72
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=58.75 E-value=6.1 Score=33.33 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=21.5
Q ss_pred hHHHHHHHCCCCcc------cCCCCCccccccEEEE
Q 029354 99 SMLEAAHENDIELE------GACEGSLACSTCHVIV 128 (194)
Q Consensus 99 tLLdaa~~~gI~l~------~~CgG~G~CGTC~V~V 128 (194)
.+.+++.++|++.. ..|| .|.||.|.|.+
T Consensus 195 ~v~~~l~~~Gv~~~~~~e~~m~cg-~G~C~~C~~~~ 229 (250)
T PRK00054 195 KVVEILKEKKVPAYVSLERRMKCG-IGACGACVCDT 229 (250)
T ss_pred HHHHHHHHcCCcEEEEEcccccCc-CcccCcCCccc
Confidence 45666777887532 3684 89999999986
No 73
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=58.06 E-value=7.2 Score=33.08 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=21.4
Q ss_pred hHHHHHHHCCCC---ccc------CCCCCccccccEEE
Q 029354 99 SMLEAAHENDIE---LEG------ACEGSLACSTCHVI 127 (194)
Q Consensus 99 tLLdaa~~~gI~---l~~------~CgG~G~CGTC~V~ 127 (194)
.+.+++.+.|++ +.. .| |.|.||.|+|.
T Consensus 204 ~~~~~L~~~Gv~~~~i~~~~~~~~~~-~~g~c~~c~~~ 240 (253)
T cd06221 204 FVAKELLKLGVPEEQIWVSLERRMKC-GVGKCGHCQIG 240 (253)
T ss_pred HHHHHHHHcCCCHHHEEEehhhcccc-CCccccCcccC
Confidence 567778888986 432 35 69999999986
No 74
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=56.77 E-value=28 Score=21.76 Aligned_cols=30 Identities=33% Similarity=0.389 Sum_probs=22.5
Q ss_pred EEEEcCCCCEEEEEeCCCchHHHHHHHCCCCc
Q 029354 80 VTFVDKDGEEKNIKVPVGMSMLEAAHENDIEL 111 (194)
Q Consensus 80 Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l 111 (194)
|++.. ||+.+++... ..|+-+++.++||.+
T Consensus 2 Vtv~~-dG~~~~v~T~-a~tV~~~L~~~gI~l 31 (43)
T PF03990_consen 2 VTVTV-DGKEKTVYTT-ASTVGDALKELGITL 31 (43)
T ss_pred EEEEE-CCEEEEEEeC-CCCHHHHHHhCCCCC
Confidence 44443 7877766655 559999999999986
No 75
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=55.22 E-value=9.2 Score=32.25 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=22.2
Q ss_pred hHHHHHHHCCCCcc------cCCCCCccccccEEEE
Q 029354 99 SMLEAAHENDIELE------GACEGSLACSTCHVIV 128 (194)
Q Consensus 99 tLLdaa~~~gI~l~------~~CgG~G~CGTC~V~V 128 (194)
.+.+.+.+.|+++. -.|| .|.|+.|.|..
T Consensus 194 ~~~~~l~~~Gv~~~~s~e~~m~Cg-~G~C~~C~~~~ 228 (248)
T cd06219 194 AVSELTRPYGIPTVVSLNPIMVDG-TGMCGACRVTV 228 (248)
T ss_pred HHHHHHHHcCCCEEEEecccccCc-cceeeeEEEEe
Confidence 45666778888743 3695 99999999985
No 76
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=54.65 E-value=9.6 Score=32.97 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=21.8
Q ss_pred hHHHHHHHCCCCcc------cCCCCCccccccEEEE
Q 029354 99 SMLEAAHENDIELE------GACEGSLACSTCHVIV 128 (194)
Q Consensus 99 tLLdaa~~~gI~l~------~~CgG~G~CGTC~V~V 128 (194)
.+.+.+.+.|+++. -.| |.|.|+.|.|..
T Consensus 195 ~v~~~l~~~gv~~~~sle~~M~C-G~G~C~~C~v~~ 229 (281)
T PRK06222 195 FVAELTKPYGIKTIVSLNPIMVD-GTGMCGACRVTV 229 (281)
T ss_pred HHHHHHHhcCCCEEEECcccccC-cccccceeEEEE
Confidence 35677778888643 379 599999999964
No 77
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=50.61 E-value=9.5 Score=32.62 Aligned_cols=28 Identities=21% Similarity=0.446 Sum_probs=19.3
Q ss_pred hHHHHHHHCCCCcc---------cCCCCCccccccEEE
Q 029354 99 SMLEAAHENDIELE---------GACEGSLACSTCHVI 127 (194)
Q Consensus 99 tLLdaa~~~gI~l~---------~~CgG~G~CGTC~V~ 127 (194)
.+.+.+.+.|++-. -.| |.|.||.|+|.
T Consensus 204 ~~~~~L~~~Gv~~~~i~~~~~~~m~c-g~g~c~~c~~~ 240 (261)
T TIGR02911 204 FTVQELLKKGIKEENIWVSYERKMCC-GVGKCGHCKID 240 (261)
T ss_pred HHHHHHHHcCCCHHHEEEEeccceec-cCcCCCCcccC
Confidence 35566777888522 147 59999999764
No 78
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=49.82 E-value=29 Score=36.58 Aligned_cols=86 Identities=17% Similarity=0.448 Sum_probs=50.0
Q ss_pred CCCEEEE-EeCCCchHHHHHHHC-CC-CcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCCCeEEee
Q 029354 86 DGEEKNI-KVPVGMSMLEAAHEN-DI-ELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTETSRLGC 162 (194)
Q Consensus 86 ~G~~~~v-~v~~GetLLdaa~~~-gI-~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~g~RLaC 162 (194)
+|+..++ .+.+..||++-++++ ++ .....|+ .|-||.|.|.| + .+ |. .. + ...-.+=+|
T Consensus 8 NG~~~~~~~vdP~~TL~~fLR~k~~ltgtKlgC~-EGGCGaCtv~l-s-~~-dp---~~--~---------~~~~avNsC 69 (1257)
T KOG0430|consen 8 NGKRVEVELLPPDLTLNTFLREKLGLTGTKLGCG-EGGCGACTVVL-S-KY-DP---EL--K---------VRHWAVNSC 69 (1257)
T ss_pred CCEEeeEecCCcchhHHHHHHHhcCCcceeeccC-CCCccceEEEE-e-cc-CC---Cc--e---------eEEeehhhh
Confidence 4654433 467888999988766 34 2567896 79999999999 3 22 21 11 1 111222355
Q ss_pred eeEEecCCCceEEEcCCcccccccCCCCC
Q 029354 163 QIVASPELDGIRLAIPAATRNFAVDGYVP 191 (194)
Q Consensus 163 Q~~~~~dldgl~V~lP~~~~n~~~~~~~~ 191 (194)
-+.+.+ ++|+.|..-+---| .-++|-|
T Consensus 70 Lt~l~s-~~g~~VtT~EGlGn-~~~g~HP 96 (1257)
T KOG0430|consen 70 LTLLNS-VHGLEVTTSEGLGN-RRDGYHP 96 (1257)
T ss_pred hhhccc-ccceEEEeeecccc-cccCcCc
Confidence 555543 45677665554444 5566655
No 79
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=49.64 E-value=65 Score=22.94 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=27.2
Q ss_pred CCCCCcEEEEEEcCCCCEEEEEeCCCchHHHHH
Q 029354 72 NKQKDMINVTFVDKDGEEKNIKVPVGMSMLEAA 104 (194)
Q Consensus 72 ~~~~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa 104 (194)
++....++|.+.+.+|....+.+...++|.++.
T Consensus 6 ~~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~ 38 (87)
T cd01763 6 GEISEHINLKVKGQDGNEVFFKIKRSTPLKKLM 38 (87)
T ss_pred CCCCCeEEEEEECCCCCEEEEEEcCCCHHHHHH
Confidence 345667889889889999999999999887764
No 80
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=47.57 E-value=27 Score=23.39 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=25.2
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCC
Q 029354 79 NVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACE 116 (194)
Q Consensus 79 ~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~Cg 116 (194)
+|++ ++|. ..+++.|.|.+|+|..-+-.+...|-
T Consensus 2 ~v~l--pdG~--~~~~~~g~T~~d~A~~I~~~l~~~~~ 35 (60)
T PF02824_consen 2 RVYL--PDGS--IKELPEGSTVLDVAYSIHSSLAKRAV 35 (60)
T ss_dssp EEEE--TTSC--EEEEETTBBHHHHHHHHSHHHHHCEE
T ss_pred EEEC--CCCC--eeeCCCCCCHHHHHHHHCHHHHhhee
Confidence 4544 7894 56699999999999987766655553
No 81
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=47.24 E-value=23 Score=25.94 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=23.1
Q ss_pred EEEEEEcCCCC-EEEEEeCCCchHHHHHHHCCCC
Q 029354 78 INVTFVDKDGE-EKNIKVPVGMSMLEAAHENDIE 110 (194)
Q Consensus 78 i~Vt~~~~~G~-~~~v~v~~GetLLdaa~~~gI~ 110 (194)
|.|.+-.++.+ ..++++++|.|+.||+...|+.
T Consensus 3 VeV~yA~p~~q~~~~l~vp~GtTv~~Ai~~Sgi~ 36 (84)
T PF03658_consen 3 VEVAYALPERQVILTLEVPEGTTVAQAIEASGIL 36 (84)
T ss_dssp EEEEEEETTCEEEEEEEEETT-BHHHHHHHHTHH
T ss_pred EEEEEECCCeEEEEEEECCCcCcHHHHHHHcCch
Confidence 34444444432 2578999999999999999984
No 82
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=46.24 E-value=14 Score=32.09 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=23.1
Q ss_pred hHHHHHHHCCCC---cc------cCCCCCccccccEEEEe
Q 029354 99 SMLEAAHENDIE---LE------GACEGSLACSTCHVIVM 129 (194)
Q Consensus 99 tLLdaa~~~gI~---l~------~~CgG~G~CGTC~V~V~ 129 (194)
.+.+.+.+.|++ +. -.|| .|.|+.|+|...
T Consensus 226 ~v~~~L~~~Gv~~~~i~~~l~~~m~cg-~g~c~~c~~~~~ 264 (289)
T PRK08345 226 FVFKELINRGYRPERIYVTLERRMRCG-IGKCGHCIVGTS 264 (289)
T ss_pred HHHHHHHHcCCCHHHEEEEehhccccc-CcccCCCccCCC
Confidence 577778888885 22 3695 999999999863
No 83
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=46.22 E-value=13 Score=23.39 Aligned_cols=16 Identities=56% Similarity=0.943 Sum_probs=12.6
Q ss_pred CCCCCccccccEEEEec
Q 029354 114 ACEGSLACSTCHVIVMD 130 (194)
Q Consensus 114 ~CgG~G~CGTC~V~V~~ 130 (194)
.| |.|.|+.|.|...+
T Consensus 5 ~C-G~G~C~~C~v~~~~ 20 (40)
T PF10418_consen 5 AC-GVGACGGCVVPVKD 20 (40)
T ss_dssp SS-SSSSS-TTEEECSS
T ss_pred cC-CCcEeCCcEeeeec
Confidence 69 49999999999853
No 84
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=44.65 E-value=42 Score=22.34 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=21.7
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCc
Q 029354 79 NVTFVDKDGEEKNIKVPVGMSMLEAAHENDIEL 111 (194)
Q Consensus 79 ~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l 111 (194)
+|++ +| +.+++++|.||.+++...+++.
T Consensus 2 ~i~v---NG--~~~~~~~~~tl~~lL~~l~~~~ 29 (66)
T PRK05659 2 NIQL---NG--EPRELPDGESVAALLAREGLAG 29 (66)
T ss_pred EEEE---CC--eEEEcCCCCCHHHHHHhcCCCC
Confidence 4554 46 5678889999999999988753
No 85
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=42.55 E-value=51 Score=23.60 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=19.2
Q ss_pred cCCCCEEEEEeCCCchHHHHHHH
Q 029354 84 DKDGEEKNIKVPVGMSMLEAAHE 106 (194)
Q Consensus 84 ~~~G~~~~v~v~~GetLLdaa~~ 106 (194)
-+||....|.+.+|+||-|++..
T Consensus 6 LPdg~~T~V~vrpG~ti~d~L~k 28 (73)
T cd01817 6 LPDGSTTVVPTRPGESIRDLLSG 28 (73)
T ss_pred CCCCCeEEEEecCCCCHHHHHHH
Confidence 37898899999999999887543
No 86
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=42.45 E-value=14 Score=31.67 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=20.0
Q ss_pred hHHHHHHHCCCCcc---------cCCCCCccccccEEE
Q 029354 99 SMLEAAHENDIELE---------GACEGSLACSTCHVI 127 (194)
Q Consensus 99 tLLdaa~~~gI~l~---------~~CgG~G~CGTC~V~ 127 (194)
.+.+.+++.|++-. -.| |.|.||+|+|.
T Consensus 206 ~~~~~L~~~Gv~~~~i~~~~~~~m~c-g~g~c~~c~~~ 242 (263)
T PRK08221 206 FTVLEFLKRGIKEENIWVSYERKMCC-GVGKCGHCKID 242 (263)
T ss_pred HHHHHHHHcCCCHHHEEEEecceeEc-cCcccCCcccC
Confidence 45666778888522 257 59999999874
No 87
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=42.06 E-value=43 Score=24.07 Aligned_cols=39 Identities=18% Similarity=0.394 Sum_probs=25.7
Q ss_pred CCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEe
Q 029354 85 KDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVM 129 (194)
Q Consensus 85 ~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~ 129 (194)
|+.+...|++.+|++|-|++..+ +.+-+. ..-.|.|...
T Consensus 7 PnqQrT~V~vrpG~tl~daL~Ka-Lk~R~l-----~pe~C~V~~~ 45 (74)
T cd01816 7 PNKQRTVVNVRPGMTLRDALAKA-LKVRGL-----QPECCAVFRL 45 (74)
T ss_pred CCCCeEEEEecCCcCHHHHHHHH-HHHcCC-----ChhHeEEEEc
Confidence 66667889999999999987654 212111 1234778775
No 88
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=41.20 E-value=31 Score=23.95 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=15.3
Q ss_pred cCCCCEEEEEeCCCchHHHHHHHC
Q 029354 84 DKDGEEKNIKVPVGMSMLEAAHEN 107 (194)
Q Consensus 84 ~~~G~~~~v~v~~GetLLdaa~~~ 107 (194)
.+++...+|++.++.+|.|++.++
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~ea 26 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEA 26 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHH
T ss_pred ccCCcEEEEEECCCCCHHHHHHHH
Confidence 467888999999999988876554
No 89
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=40.91 E-value=33 Score=24.87 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCchHHHHHH
Q 029354 85 KDGEEKNIKVPVGMSMLEAAH 105 (194)
Q Consensus 85 ~~G~~~~v~v~~GetLLdaa~ 105 (194)
++|...++.+++|+|++|++.
T Consensus 7 Pn~~~~~v~vrp~~tv~dvLe 27 (77)
T cd01818 7 PDNQPVLTYLRPGMSVEDFLE 27 (77)
T ss_pred CCCceEEEEECCCCCHHHHHH
Confidence 688889999999999999864
No 90
>PRK06437 hypothetical protein; Provisional
Probab=40.87 E-value=59 Score=22.26 Aligned_cols=25 Identities=8% Similarity=0.206 Sum_probs=21.6
Q ss_pred CCCEEEEEeCCCchHHHHHHHCCCC
Q 029354 86 DGEEKNIKVPVGMSMLEAAHENDIE 110 (194)
Q Consensus 86 ~G~~~~v~v~~GetLLdaa~~~gI~ 110 (194)
++++++++++.+.|+.|.+.+.|++
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~Lgi~ 33 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKDLGLD 33 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHHcCCC
Confidence 4566889999999999999998885
No 91
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=38.50 E-value=27 Score=34.57 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=21.9
Q ss_pred hHHHHHHHCCCCc------ccCCCCCccccccEEEE
Q 029354 99 SMLEAAHENDIEL------EGACEGSLACSTCHVIV 128 (194)
Q Consensus 99 tLLdaa~~~gI~l------~~~CgG~G~CGTC~V~V 128 (194)
.+.+.+.+.|++. .-.| |.|.|+.|.|..
T Consensus 195 ~v~~~l~~~gv~~~~Sle~~M~C-G~G~C~~C~v~~ 229 (752)
T PRK12778 195 FVCLLTKKYGIPTIVSLNTIMVD-GTGMCGACRVTV 229 (752)
T ss_pred HHHHHHHHcCCCEEEeCcccccC-cccccCcceeEe
Confidence 3556677888875 3479 599999999953
No 92
>PRK07440 hypothetical protein; Provisional
Probab=36.26 E-value=88 Score=21.60 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=23.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCc
Q 029354 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIEL 111 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l 111 (194)
+++|++ +| +.++++.+.||.+.+...+++.
T Consensus 4 ~m~i~v---NG--~~~~~~~~~tl~~lL~~l~~~~ 33 (70)
T PRK07440 4 PITLQV---NG--ETRTCSSGTSLPDLLQQLGFNP 33 (70)
T ss_pred ceEEEE---CC--EEEEcCCCCCHHHHHHHcCCCC
Confidence 566766 36 5788899999999999888754
No 93
>PRK05802 hypothetical protein; Provisional
Probab=35.53 E-value=30 Score=30.81 Aligned_cols=28 Identities=29% Similarity=0.627 Sum_probs=20.3
Q ss_pred HHHHHHH--CCCCc------ccCCCCCccccccEEEE
Q 029354 100 MLEAAHE--NDIEL------EGACEGSLACSTCHVIV 128 (194)
Q Consensus 100 LLdaa~~--~gI~l------~~~CgG~G~CGTC~V~V 128 (194)
+.+.+.+ .+|++ .-.| |.|.||.|.|..
T Consensus 269 v~~~l~~~~~~i~~~~Sle~~M~C-G~G~Cg~C~v~~ 304 (320)
T PRK05802 269 IIEYLDKLNEKIKLSCSNNAKMCC-GEGICGACTVRY 304 (320)
T ss_pred HHHHHhhhcCCceEEEeCCCeeeC-cCccCCeeEEEE
Confidence 4455555 67765 2368 599999999997
No 94
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.85 E-value=83 Score=23.83 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=25.6
Q ss_pred CcEEEEEEc--CCCC-EEEEEeCCCchHHHHHHHCCCC
Q 029354 76 DMINVTFVD--KDGE-EKNIKVPVGMSMLEAAHENDIE 110 (194)
Q Consensus 76 ~~i~Vt~~~--~~G~-~~~v~v~~GetLLdaa~~~gI~ 110 (194)
+|+.|.++- ++-. -.++.+.+|.|+-||++..|+.
T Consensus 2 ~~I~VevvyAlPerq~l~~v~v~egatV~dAi~~Sgll 39 (99)
T COG2914 2 EMIAVEVVYALPERQYLCRVQLQEGATVEDAILASGLL 39 (99)
T ss_pred ceeEEEEEEEcCCcceEEEEEeccCcCHHHHHHhcchh
Confidence 456666543 3322 2579999999999999999985
No 95
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=33.28 E-value=84 Score=20.72 Aligned_cols=25 Identities=12% Similarity=0.276 Sum_probs=20.3
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 79 NVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 79 ~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
+|++...+|+..++.+.+.+|+.+.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~l 26 (72)
T cd01809 2 EIKVKTLDSQTHTFTVEEEITVLDL 26 (72)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 5666667788899999999998876
No 96
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=31.47 E-value=1.2e+02 Score=20.91 Aligned_cols=31 Identities=13% Similarity=0.299 Sum_probs=23.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 73 ~~~~~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
+....++|.|.-+||...+-.....+||-++
T Consensus 2 ~~~~~~~I~vRlpdG~~l~~~F~~~~tl~~l 32 (82)
T PF00789_consen 2 EESDVVRIQVRLPDGSRLQRRFPKSDTLQDL 32 (82)
T ss_dssp STSSEEEEEEEETTSTEEEEEEETTSBHHHH
T ss_pred CCCCEEEEEEECCCCCEEEEEECCcchHHHH
Confidence 3455667777779999888888899887665
No 97
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=30.92 E-value=72 Score=21.33 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=30.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHH----HCCCCcccCCCCCccccccEEEEeccc
Q 029354 78 INVTFVDKDGEEKNIKVPVGMSMLEAAH----ENDIELEGACEGSLACSTCHVIVMDMD 132 (194)
Q Consensus 78 i~Vt~~~~~G~~~~v~v~~GetLLdaa~----~~gI~l~~~CgG~G~CGTC~V~V~~ge 132 (194)
++|++...+|+...+.+...+++-.+.. ..|++.+ .+....+ +|+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~---------~~~~l~f-dG~ 49 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPE---------ESIRLIF-DGK 49 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT----------TTEEEEE-TTE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCcc---------ceEEEEE-CCE
Confidence 4678888889888999999987666543 4455554 3455666 664
No 98
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=29.54 E-value=33 Score=20.10 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=14.5
Q ss_pred eCCCchHHHHHHHCCCCc
Q 029354 94 VPVGMSMLEAAHENDIEL 111 (194)
Q Consensus 94 v~~GetLLdaa~~~gI~l 111 (194)
+..|+||-+++.+.|+++
T Consensus 1 v~~gdtl~~IA~~~~~~~ 18 (44)
T TIGR02899 1 VQKGDTLWKIAKKYGVDF 18 (44)
T ss_pred CCCCCCHHHHHHHHCcCH
Confidence 467899999999987764
No 99
>PF10531 SLBB: SLBB domain; InterPro: IPR019554 The soluble ligand-binding beta-grasp domain (SLBB) contains a beta-grasp fold. They are found in a diverse set of proteins that include the animal vitamin B12 uptake proteins; transcobalamin, intrinsic factor and the bacterial polysaccharide export proteins []. Some proteins may be part of a membrane complex involved in electron transport, others are probably involved in the export of the extracellular polysaccharide colanic acid from the cell to medium.; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1 2W8I_E 2W8H_E 2J58_D.
Probab=29.12 E-value=96 Score=20.33 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=17.8
Q ss_pred EEEEeCCCchHHHHHHHCCCCccc
Q 029354 90 KNIKVPVGMSMLEAAHENDIELEG 113 (194)
Q Consensus 90 ~~v~v~~GetLLdaa~~~gI~l~~ 113 (194)
-.+++..|+||.|++..+|-..+.
T Consensus 12 G~~~~~~g~tl~~~i~~AGG~~~~ 35 (59)
T PF10531_consen 12 GTYELPPGTTLSDAIAQAGGLTPR 35 (59)
T ss_dssp EEEEEETT-BHHHHHHCTTSBBTT
T ss_pred EEEEECCCCcHHHHHHHhCCCCCC
Confidence 478888899999999888754443
No 100
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=28.65 E-value=43 Score=24.16 Aligned_cols=43 Identities=23% Similarity=0.432 Sum_probs=26.5
Q ss_pred CchHHHHHHHC-CCC-cccCCCCCccccccEEE---EecccccCCCCCCChHH
Q 029354 97 GMSMLEAAHEN-DIE-LEGACEGSLACSTCHVI---VMDMDYYNKLEDPTDEE 144 (194)
Q Consensus 97 GetLLdaa~~~-gI~-l~~~CgG~G~CGTC~V~---V~~ge~~~~l~~~~~~E 144 (194)
.+.+++.+.+. +++ +.+.|- +.||.|... +++|+. +...+.+|
T Consensus 16 ~~~~~~~Le~~p~~~Vie~gCl--~~Cg~C~~~pFAlVnG~~---V~A~t~ee 63 (78)
T PF07293_consen 16 TDQVYEKLEKDPDIDVIEYGCL--SYCGPCAKKPFALVNGEI---VAAETAEE 63 (78)
T ss_pred hHHHHHHHhcCCCccEEEcChh--hhCcCCCCCccEEECCEE---EecCCHHH
Confidence 34567776543 455 579995 799999853 457654 34455444
No 101
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=27.70 E-value=32 Score=28.65 Aligned_cols=15 Identities=20% Similarity=0.552 Sum_probs=12.6
Q ss_pred cCCCCCccccccEEEE
Q 029354 113 GACEGSLACSTCHVIV 128 (194)
Q Consensus 113 ~~CgG~G~CGTC~V~V 128 (194)
-.|| .|.||.|.|..
T Consensus 214 m~Cg-~G~C~~C~~~~ 228 (243)
T cd06192 214 MCCG-IGICGACTIET 228 (243)
T ss_pred ccCc-cccccceEEEe
Confidence 3685 89999999985
No 102
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=27.33 E-value=1.5e+02 Score=21.44 Aligned_cols=31 Identities=13% Similarity=0.305 Sum_probs=23.4
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCC
Q 029354 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIE 110 (194)
Q Consensus 75 ~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~ 110 (194)
+.|++|++ +| +..++..+.||.+.+...+++
T Consensus 16 ~~~m~I~V---NG--~~~~~~~~~tl~~LL~~l~~~ 46 (84)
T PRK06083 16 MVLITISI---ND--QSIQVDISSSLAQIIAQLSLP 46 (84)
T ss_pred CceEEEEE---CC--eEEEcCCCCcHHHHHHHcCCC
Confidence 45777876 36 467778899999999887664
No 103
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=27.29 E-value=29 Score=24.01 Aligned_cols=8 Identities=50% Similarity=1.148 Sum_probs=6.5
Q ss_pred CCCCCCCC
Q 029354 187 DGYVPKPH 194 (194)
Q Consensus 187 ~~~~~~~~ 194 (194)
=||.|.||
T Consensus 36 CGFNP~Ph 43 (61)
T PF05715_consen 36 CGFNPTPH 43 (61)
T ss_pred cCCCCCcc
Confidence 38888888
No 104
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function.
Probab=26.73 E-value=64 Score=18.02 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=16.5
Q ss_pred EEEeCCCchHHHHHHHCCCCc
Q 029354 91 NIKVPVGMSMLEAAHENDIEL 111 (194)
Q Consensus 91 ~v~v~~GetLLdaa~~~gI~l 111 (194)
...+..|+|+-.++.+.++..
T Consensus 2 ~~~v~~gdt~~~ia~~~~~~~ 22 (46)
T cd00118 2 TYTVKKGDTLSSIAQRYGISV 22 (46)
T ss_pred EEEECCCCCHHHHHHHHCcCH
Confidence 456788999999998887753
No 105
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=26.34 E-value=54 Score=19.63 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=12.7
Q ss_pred EeCCCchHHHHHHHCCCCc
Q 029354 93 KVPVGMSMLEAAHENDIEL 111 (194)
Q Consensus 93 ~v~~GetLLdaa~~~gI~l 111 (194)
.+.+|||+-.+|.+.|+..
T Consensus 2 ~V~~gDtl~~IA~~~~~~~ 20 (44)
T PF01476_consen 2 TVQPGDTLWSIAKRYGISV 20 (44)
T ss_dssp EE-TT--HHHHHHHTTS-H
T ss_pred EECcCCcHHHHHhhhhhhH
Confidence 4788999999999998764
No 106
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=26.18 E-value=1.5e+02 Score=19.94 Aligned_cols=28 Identities=7% Similarity=0.031 Sum_probs=21.2
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCc
Q 029354 79 NVTFVDKDGEEKNIKVPVGMSMLEAAHENDIEL 111 (194)
Q Consensus 79 ~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l 111 (194)
+|++ +| ...++.++.||.+++...+++.
T Consensus 2 ~i~v---NG--~~~~~~~~~tl~~ll~~l~~~~ 29 (65)
T PRK05863 2 IVVV---NE--EQVEVDEQTTVAALLDSLGFPE 29 (65)
T ss_pred EEEE---CC--EEEEcCCCCcHHHHHHHcCCCC
Confidence 4554 36 4667778999999999988854
No 107
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=26.05 E-value=1.5e+02 Score=20.58 Aligned_cols=30 Identities=10% Similarity=0.357 Sum_probs=23.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCc
Q 029354 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIEL 111 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l 111 (194)
+++|.+ +| +.++++++.|+.|.+...|++.
T Consensus 2 ~m~i~~---ng--~~~e~~~~~tv~dLL~~l~~~~ 31 (68)
T COG2104 2 PMTIQL---NG--KEVEIAEGTTVADLLAQLGLNP 31 (68)
T ss_pred cEEEEE---CC--EEEEcCCCCcHHHHHHHhCCCC
Confidence 345554 25 7899999999999999999976
No 108
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=25.83 E-value=1.4e+02 Score=19.80 Aligned_cols=25 Identities=8% Similarity=0.118 Sum_probs=20.7
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 79 NVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 79 ~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
+|++...+|+...+++.+.+|+.+.
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tV~~l 26 (76)
T cd01803 2 QIFVKTLTGKTITLEVEPSDTIENV 26 (76)
T ss_pred EEEEEcCCCCEEEEEECCcCcHHHH
Confidence 4667777898889999999998876
No 109
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=25.42 E-value=1.4e+02 Score=19.86 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=20.4
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 79 NVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 79 ~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
+|++.+.+|+...+++.+.+|+-+.
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~l 26 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERI 26 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHH
Confidence 4667777898888999999998775
No 110
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=25.02 E-value=1.4e+02 Score=19.68 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=18.0
Q ss_pred EEEEeCCCchHHHHHHHCCCC
Q 029354 90 KNIKVPVGMSMLEAAHENDIE 110 (194)
Q Consensus 90 ~~v~v~~GetLLdaa~~~gI~ 110 (194)
..+++++|.||.+++...+++
T Consensus 8 ~~~~~~~~~tl~~ll~~l~~~ 28 (65)
T PRK06944 8 QTLSLPDGATVADALAAYGAR 28 (65)
T ss_pred EEEECCCCCcHHHHHHhhCCC
Confidence 578889999999999988874
No 111
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=23.59 E-value=1.6e+02 Score=19.72 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=20.1
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 79 NVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 79 ~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
+|++...+|+...+++.+.+|+.+.
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~l 26 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAEL 26 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 4556666788889999999998876
No 112
>PRK13669 hypothetical protein; Provisional
Probab=23.54 E-value=44 Score=24.21 Aligned_cols=32 Identities=28% Similarity=0.499 Sum_probs=21.1
Q ss_pred CCC-cccCCCCCccccccEEE---EecccccCCCCCCChHH
Q 029354 108 DIE-LEGACEGSLACSTCHVI---VMDMDYYNKLEDPTDEE 144 (194)
Q Consensus 108 gI~-l~~~CgG~G~CGTC~V~---V~~ge~~~~l~~~~~~E 144 (194)
+++ +++.|- +.||.|+.+ +++|+. +..++.+|
T Consensus 28 ~~dVie~gCl--s~CG~C~~~~FAlVng~~---V~a~t~ee 63 (78)
T PRK13669 28 NLDVLEYGCL--GYCGICSEGLFALVNGEV---VEGETPEE 63 (78)
T ss_pred CceEEEcchh--hhCcCcccCceEEECCeE---eecCCHHH
Confidence 566 889995 789999854 456653 34455544
No 113
>PTZ00044 ubiquitin; Provisional
Probab=22.93 E-value=1.7e+02 Score=19.61 Aligned_cols=25 Identities=4% Similarity=0.161 Sum_probs=20.5
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 79 NVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 79 ~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
+|.+...+|+...+.+.+.+|+.++
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tv~~l 26 (76)
T PTZ00044 2 QILIKTLTGKKQSFNFEPDNTVQQV 26 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 4566667898899999999999875
No 114
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=22.85 E-value=1.7e+02 Score=19.73 Aligned_cols=25 Identities=20% Similarity=0.090 Sum_probs=20.2
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 79 NVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 79 ~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
+|++...+|+...+++.+.+|+-+.
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tV~~l 26 (74)
T cd01807 2 FLTVKLLQGRECSLQVSEKESVSTL 26 (74)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 4566666898889999999999885
No 115
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=22.13 E-value=84 Score=22.62 Aligned_cols=22 Identities=9% Similarity=0.135 Sum_probs=13.6
Q ss_pred EEEEeCCCchHHHHHHHCCCCc
Q 029354 90 KNIKVPVGMSMLEAAHENDIEL 111 (194)
Q Consensus 90 ~~v~v~~GetLLdaa~~~gI~l 111 (194)
+++.|+.|+||-.+..+.|++.
T Consensus 3 ~~~~V~~GDtLs~iF~~~gls~ 24 (85)
T PF04225_consen 3 QEYTVKSGDTLSTIFRRAGLSA 24 (85)
T ss_dssp -EEE--TT--HHHHHHHTT--H
T ss_pred cEEEECCCCcHHHHHHHcCCCH
Confidence 5788999999999999999964
No 116
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=21.99 E-value=2e+02 Score=19.91 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 78 INVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 78 i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
.+|++....|+..++++.+..|+-+.
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~L 27 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGL 27 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHH
Confidence 35777777888889999999998875
No 117
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=21.82 E-value=1.8e+02 Score=20.10 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 78 INVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 78 i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
++|++....|+...+++.+..|+-+.
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~l 28 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSEL 28 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHH
Confidence 46777777898888899999998875
No 118
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=21.39 E-value=2.2e+02 Score=20.88 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=21.3
Q ss_pred EEEEcCCCCEEEEEeCCCchHHHHHHH
Q 029354 80 VTFVDKDGEEKNIKVPVGMSMLEAAHE 106 (194)
Q Consensus 80 Vt~~~~~G~~~~v~v~~GetLLdaa~~ 106 (194)
|+|...||..+++.+.+.+|..|++..
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~ 31 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQL 31 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHH
Confidence 444446899999999999999988643
No 119
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=21.18 E-value=77 Score=32.84 Aligned_cols=29 Identities=21% Similarity=0.414 Sum_probs=20.4
Q ss_pred hHHHHHHHCCCCc----c--cCCCCCccccccEEEE
Q 029354 99 SMLEAAHENDIEL----E--GACEGSLACSTCHVIV 128 (194)
Q Consensus 99 tLLdaa~~~gI~l----~--~~CgG~G~CGTC~V~V 128 (194)
.+.+++.+.||+. + ..| |.|.||.|+|.+
T Consensus 195 av~~~~~~~gi~~~vSle~~M~c-G~G~Cg~C~v~~ 229 (1006)
T PRK12775 195 ACVETTRPFGVKTMVSLNAIMVD-GTGMCGSCRVTV 229 (1006)
T ss_pred HHHHHHHHCCCcEEECChhheeC-ccceeCCCEeee
Confidence 3445567778842 2 468 599999999974
No 120
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=21.17 E-value=54 Score=28.66 Aligned_cols=19 Identities=37% Similarity=0.733 Sum_probs=17.9
Q ss_pred hHHHHHHHCCCCcccCCCC
Q 029354 99 SMLEAAHENDIELEGACEG 117 (194)
Q Consensus 99 tLLdaa~~~gI~l~~~CgG 117 (194)
-|+++|++.|+||-+.|+|
T Consensus 98 aLi~~ALe~~iPILgICRG 116 (243)
T COG2071 98 ALIRAALERGIPILGICRG 116 (243)
T ss_pred HHHHHHHHcCCCEEEEccc
Confidence 6899999999999999998
No 121
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=21.09 E-value=2.7e+02 Score=20.64 Aligned_cols=27 Identities=7% Similarity=0.089 Sum_probs=22.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 77 MINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
..+|+|...+|+...+++.+.+|+-++
T Consensus 27 ~M~I~Vk~l~G~~~~leV~~~~TV~~l 53 (103)
T cd01802 27 TMELFIETLTGTCFELRVSPFETVISV 53 (103)
T ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHH
Confidence 457878878898899999999999884
No 122
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=21.07 E-value=2e+02 Score=19.47 Aligned_cols=23 Identities=9% Similarity=0.125 Sum_probs=18.7
Q ss_pred EEEcCCCCEEEEEeCCCchHHHH
Q 029354 81 TFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 81 t~~~~~G~~~~v~v~~GetLLda 103 (194)
+|....|+..++++.+.+|+.++
T Consensus 2 ~vk~~~g~~~~l~v~~~~tV~~l 24 (74)
T cd01810 2 LVRNDKGRSSIYEVQLTQTVATL 24 (74)
T ss_pred EEECCCCCEEEEEECCcChHHHH
Confidence 44556788889999999999884
No 123
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=20.17 E-value=82 Score=32.46 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=21.8
Q ss_pred hHHHHHHHCCCCc------ccCCCCCccccccEEEE
Q 029354 99 SMLEAAHENDIEL------EGACEGSLACSTCHVIV 128 (194)
Q Consensus 99 tLLdaa~~~gI~l------~~~CgG~G~CGTC~V~V 128 (194)
.+.+.+.+.|++. ...| |.|.|+.|.|.+
T Consensus 861 av~~~l~~~Gv~~~vSlE~~M~C-G~G~C~~C~v~~ 895 (944)
T PRK12779 861 AVSDLTKPYGVKTVASLNSIMVD-ATGMCGACMVPV 895 (944)
T ss_pred HHHHHHHHcCCCeEEeecccccC-CCeeeCeeeeee
Confidence 4556677888864 2479 599999999975
Done!