Query 029354
Match_columns 194
No_of_seqs 249 out of 1198
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 18:57:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029354.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029354hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hui_A Ferredoxin; cytochrome 100.0 1.5E-30 5E-35 202.2 10.0 110 72-182 16-126 (126)
2 2bt6_A Adrenodoxin 1; rutheniu 100.0 5.6E-30 1.9E-34 192.3 9.5 105 73-178 2-108 (108)
3 3n9z_C Adrenodoxin; cytochrome 100.0 3E-31 1E-35 205.3 0.7 111 74-185 2-114 (123)
4 2y5c_A Adrenodoxin-like protei 100.0 1.6E-29 5.6E-34 190.2 10.1 107 75-182 3-109 (109)
5 3lxf_A Ferredoxin; iron, iron- 100.0 2.5E-29 8.5E-34 188.6 10.5 102 79-181 2-104 (104)
6 1xlq_A Putidaredoxin, PDX; [2F 99.9 4.2E-27 1.4E-31 175.9 11.0 102 79-181 2-105 (106)
7 1uwm_A Ferredoxin VI, FDVI; el 99.9 2.5E-27 8.5E-32 177.1 9.8 103 78-181 1-105 (106)
8 2wlb_A ETP1-FD, electron trans 99.9 7.5E-27 2.6E-31 173.6 9.8 102 76-178 2-103 (103)
9 3ah7_A [2Fe-2S]ferredoxin; [2F 99.9 3.5E-26 1.2E-30 172.8 10.8 108 77-188 1-111 (113)
10 1b9r_A Protein (terpredoxin); 99.9 2.8E-27 9.5E-32 176.5 4.0 102 78-180 1-104 (105)
11 1i7h_A Ferredoxin; 2Fe-2S,elec 99.9 1.1E-23 3.7E-28 158.8 10.5 106 77-187 1-110 (111)
12 1l5p_A Ferredoxin; [2Fe-2S] cl 99.9 1E-23 3.5E-28 154.5 9.5 91 79-177 2-93 (93)
13 1jq4_A Methane monooxygenase c 99.8 8E-22 2.7E-26 145.2 1.4 94 77-180 4-97 (98)
14 1czp_A Ferredoxin I; [2Fe-2S] 99.8 7.9E-21 2.7E-25 140.0 6.6 92 78-181 3-95 (98)
15 1frr_A Ferredoxin I; electron 99.8 7.1E-21 2.4E-25 138.9 6.2 92 77-181 1-92 (95)
16 1a70_A Ferredoxin; iron-sulfur 99.8 5.1E-21 1.7E-25 140.9 5.3 94 78-184 3-96 (97)
17 1awd_A Ferredoxin; electron tr 99.8 7.4E-21 2.5E-25 139.2 5.8 91 79-182 2-92 (94)
18 1wri_A Ferredoxin II, ferredox 99.8 1.2E-20 4.1E-25 137.9 5.1 91 77-181 1-91 (93)
19 1frd_A Heterocyst [2Fe-2S] fer 99.8 2.2E-20 7.4E-25 137.3 6.4 92 78-181 3-95 (98)
20 1iue_A Ferredoxin; electron tr 99.8 1.3E-20 4.5E-25 138.9 4.6 93 78-183 3-95 (98)
21 1krh_A Benzoate 1,2-dioxygenas 99.8 3.2E-19 1.1E-23 155.0 6.6 98 75-180 1-98 (338)
22 3zyy_X Iron-sulfur cluster bin 99.7 3.4E-18 1.1E-22 162.2 5.8 94 75-182 1-94 (631)
23 1doi_A 2Fe-2S ferredoxin; halo 99.7 2.3E-18 7.7E-23 133.7 2.0 92 77-180 27-118 (128)
24 2pia_A Phthalate dioxygenase r 99.6 3.1E-15 1.1E-19 129.7 7.0 87 75-177 235-321 (321)
25 3i9v_3 NADH-quinone oxidoreduc 98.6 7.6E-08 2.6E-12 93.0 7.5 85 77-178 1-96 (783)
26 1kf6_B Fumarate reductase iron 98.3 7.2E-07 2.5E-11 74.3 6.9 61 89-176 25-91 (243)
27 3c8y_A Iron hydrogenase 1; dit 98.3 9.3E-07 3.2E-11 82.8 8.2 68 77-177 1-74 (574)
28 1t3q_A Quinoline 2-oxidoreduct 98.3 1.4E-06 4.9E-11 69.8 7.5 63 86-176 17-81 (168)
29 2bs2_B Quinol-fumarate reducta 98.1 5.1E-06 1.7E-10 69.2 6.6 41 89-131 25-71 (241)
30 3hrd_D Nicotinate dehydrogenas 97.9 2.1E-05 7.3E-10 62.9 7.1 50 79-131 5-56 (160)
31 2wdq_B Succinate dehydrogenase 97.9 1.3E-05 4.5E-10 66.4 6.0 41 89-131 22-69 (238)
32 1n62_A Carbon monoxide dehydro 97.9 2.9E-05 1E-09 62.3 7.2 50 79-131 5-56 (166)
33 1ffv_A CUTS, iron-sulfur prote 97.9 3.4E-05 1.2E-09 61.8 7.2 44 86-131 11-56 (163)
34 1rm6_C 4-hydroxybenzoyl-COA re 97.9 2.8E-05 9.5E-10 62.0 6.7 63 86-176 10-74 (161)
35 2h88_B Succinate dehydrogenase 97.9 3E-05 1E-09 65.2 7.1 60 89-176 32-100 (252)
36 3vr8_B Iron-sulfur subunit of 96.9 0.0023 7.9E-08 55.2 7.7 41 89-131 56-103 (282)
37 3nvw_A Xanthine dehydrogenase/ 96.6 0.0023 8E-08 51.2 5.2 49 76-128 3-54 (164)
38 1vlb_A Aldehyde oxidoreductase 96.5 0.0039 1.3E-07 61.4 7.2 50 79-131 3-54 (907)
39 2w3s_A Xanthine dehydrogenase; 96.3 0.005 1.7E-07 56.4 6.0 43 86-129 8-52 (462)
40 1dgj_A Aldehyde oxidoreductase 96.2 0.0048 1.6E-07 60.7 5.8 50 79-131 3-54 (907)
41 1y56_A Hypothetical protein PH 95.5 0.015 5.1E-07 52.5 5.4 49 75-128 13-66 (493)
42 2gag_A Heterotetrameric sarcos 92.2 0.28 9.4E-06 48.2 7.2 49 75-129 20-79 (965)
43 3unc_A Xanthine dehydrogenase/ 91.5 0.23 8E-06 50.8 6.0 48 77-128 5-55 (1332)
44 3u7z_A Putative metal binding 85.1 1.4 4.7E-05 32.3 4.9 34 74-108 5-40 (101)
45 1uh6_A Ubiquitin-like 5; beta- 80.3 3.7 0.00013 29.8 5.7 40 73-112 24-67 (100)
46 3zyv_A AOH1; oxidoreductase, m 78.6 2.9 9.9E-05 42.8 6.1 43 86-129 15-60 (1335)
47 2l05_A Serine/threonine-protei 78.2 4 0.00014 29.6 5.2 47 75-129 17-63 (95)
48 3plu_A Ubiquitin-like modifier 78.0 2.8 9.7E-05 30.2 4.3 31 73-103 17-47 (93)
49 1wxm_A A-RAF proto-oncogene se 75.6 3.5 0.00012 29.5 4.1 50 72-129 4-53 (86)
50 2al3_A TUG long isoform; TUG U 70.7 4.5 0.00015 29.1 3.8 32 79-110 11-46 (90)
51 3ny5_A Serine/threonine-protei 68.0 6.2 0.00021 28.7 4.1 48 74-129 12-59 (96)
52 1v2y_A 3300001G02RIK protein; 65.5 12 0.00041 27.2 5.3 30 74-103 4-33 (105)
53 3kdv_A DDRB, DNA damage respon 65.3 7.3 0.00025 31.0 4.3 37 73-109 3-39 (184)
54 3v6c_B Ubiquitin; structural g 65.1 14 0.00047 25.2 5.4 41 71-111 11-55 (91)
55 1rrb_A RAF-1 RBD, RAF proto-on 63.8 6.7 0.00023 29.0 3.6 48 74-129 17-64 (107)
56 1wwt_A Threonyl-tRNA synthetas 63.7 12 0.00041 25.4 4.9 39 73-115 7-46 (88)
57 2gow_A HCG-1 protein, ubiquiti 63.5 13 0.00044 27.8 5.3 29 75-103 15-43 (125)
58 2dzi_A Ubiquitin-like protein 62.1 16 0.00056 23.7 5.2 29 75-103 5-33 (81)
59 4hcn_B Polyubiquitin, ubiquiti 60.9 9.5 0.00032 26.5 3.9 32 72-103 17-48 (98)
60 3dbh_I NEDD8; cell cycle, acti 60.3 22 0.00076 23.5 5.7 30 74-103 9-38 (88)
61 1c1y_B Proto-onkogene serine/t 60.0 12 0.00042 26.0 4.2 45 77-129 3-47 (77)
62 1wh3_A 59 kDa 2'-5'-oligoadeny 59.3 16 0.00054 24.3 4.7 30 74-103 4-33 (87)
63 1wgh_A Ubiquitin-like 3, HCG-1 58.2 28 0.00094 25.6 6.3 31 73-103 12-42 (116)
64 1wgd_A Homocysteine-responsive 58.0 14 0.00047 25.3 4.3 32 72-103 2-35 (93)
65 2uyz_B Small ubiquitin-related 57.6 13 0.00043 24.4 4.0 29 75-103 1-29 (79)
66 3u30_A Ubiquitin, linear DI-ub 55.4 12 0.00041 28.5 4.0 41 71-111 14-58 (172)
67 1wia_A Hypothetical ubiquitin- 51.4 24 0.00081 24.1 4.7 31 75-105 5-35 (95)
68 2io1_B Small ubiquitin-related 48.9 23 0.00078 24.8 4.3 38 73-110 3-44 (94)
69 4dwf_A HLA-B-associated transc 48.0 27 0.00093 23.4 4.5 28 76-103 4-31 (90)
70 3a4r_A Nfatc2-interacting prot 47.6 50 0.0017 22.1 5.8 39 72-110 2-45 (79)
71 1wyw_B Ubiquitin-like protein 45.8 24 0.0008 24.5 4.0 31 73-103 17-47 (97)
72 1wy8_A NP95-like ring finger p 45.0 47 0.0016 22.0 5.3 29 75-103 5-35 (89)
73 3mtn_B UBA80, ubcep1, ubiquiti 44.0 36 0.0012 22.1 4.5 27 77-103 3-29 (85)
74 1wgr_A Growth factor receptor- 43.5 53 0.0018 23.7 5.6 33 77-109 9-41 (100)
75 1ep3_B Dihydroorotate dehydrog 42.6 12 0.00041 30.2 2.2 28 99-128 205-238 (262)
76 2l32_A Small archaeal modifier 42.4 47 0.0016 22.2 4.9 33 78-112 3-35 (74)
77 1wx8_A Riken cDNA 4931431F19; 42.2 62 0.0021 21.8 5.7 29 74-103 14-42 (96)
78 3phx_B Ubiquitin-like protein 41.0 46 0.0016 21.5 4.7 27 77-103 4-30 (79)
79 4eew_A Large proline-rich prot 40.9 38 0.0013 22.5 4.3 29 75-103 15-43 (88)
80 2kmm_A Guanosine-3',5'-BIS(dip 40.2 26 0.00088 22.5 3.2 31 78-112 3-33 (73)
81 1wgg_A Ubiquitin carboxyl-term 39.2 38 0.0013 23.5 4.2 38 73-111 3-45 (96)
82 1v86_A DNA segment, CHR 7, way 38.9 61 0.0021 22.2 5.3 32 71-103 11-42 (95)
83 1yqb_A Ubiquilin 3; structural 38.6 49 0.0017 23.0 4.7 33 70-103 15-47 (100)
84 2kan_A Uncharacterized protein 38.4 77 0.0026 21.7 5.7 30 73-103 11-40 (94)
85 2hj8_A Interferon-induced 17 k 37.0 46 0.0016 22.3 4.2 28 76-103 3-30 (88)
86 3hvz_A Uncharacterized protein 37.0 34 0.0012 23.3 3.5 34 80-115 8-41 (78)
87 2kjr_A CG11242; UBL, ubiquitin 37.0 74 0.0025 22.1 5.5 35 69-103 7-43 (95)
88 2wyq_A HHR23A, UV excision rep 36.5 52 0.0018 21.4 4.4 27 77-103 5-31 (85)
89 1ttn_A DC-UBP, dendritic cell- 36.3 44 0.0015 23.4 4.2 30 74-103 20-49 (106)
90 2k8h_A Small ubiquitin protein 35.9 87 0.003 22.6 5.8 38 73-110 22-63 (110)
91 1e0g_A Membrane-bound lytic mu 35.4 22 0.00077 20.8 2.1 21 91-111 4-24 (48)
92 2hj1_A Hypothetical protein; s 35.2 21 0.00072 25.5 2.3 35 76-110 11-48 (97)
93 1wz0_A Ubiquitin-like protein 35.1 97 0.0033 22.0 5.9 38 74-111 21-62 (104)
94 3m62_B UV excision repair prot 34.9 29 0.00098 24.5 3.0 27 77-103 1-27 (106)
95 2lxa_A Ubiquitin-like protein 34.2 21 0.00073 24.7 2.1 27 77-103 1-29 (87)
96 2dzk_A UBX domain-containing p 33.8 1E+02 0.0035 21.9 5.9 34 70-103 6-39 (109)
97 1tyg_B YJBS; alpha beta barrel 33.4 34 0.0012 23.8 3.1 32 74-110 17-49 (87)
98 1wxv_A BAG-family molecular ch 33.1 88 0.003 20.9 5.2 29 74-103 4-37 (92)
99 2io0_B Small ubiquitin-related 32.3 60 0.002 22.5 4.3 35 76-110 4-42 (91)
100 1j8c_A Ubiquitin-like protein 32.1 1.1E+02 0.0039 22.1 6.0 29 74-103 29-57 (125)
101 2d07_B Ubiquitin-like protein 31.7 81 0.0028 21.7 4.9 38 73-110 13-54 (93)
102 2dzj_A Synaptic glycoprotein S 31.4 70 0.0024 21.8 4.5 29 75-103 8-39 (88)
103 3n3k_B Ubiquitin; hydrolase, p 31.2 39 0.0013 22.0 3.1 27 77-103 3-29 (85)
104 2l7r_A Ubiquitin-like protein 30.5 50 0.0017 22.5 3.6 31 71-103 13-43 (93)
105 3vdz_A Ubiquitin-40S ribosomal 29.8 68 0.0023 22.7 4.3 29 75-103 33-61 (111)
106 1wx7_A Ubiquilin 3; ubiquitin- 28.9 1.1E+02 0.0036 21.2 5.2 30 73-103 13-42 (106)
107 1v6e_A Cytoskeleton-associated 28.4 92 0.0031 21.2 4.7 32 72-103 2-34 (95)
108 1se9_A Ubiquitin family; ubiqu 28.0 1E+02 0.0035 23.0 5.1 33 71-103 10-43 (126)
109 1v5o_A 1700011N24RIK protein; 27.9 1.2E+02 0.0042 20.8 5.4 35 76-110 6-48 (102)
110 1ndd_A NEDD8, protein (ubiquit 27.3 83 0.0029 19.6 4.1 25 79-103 2-26 (76)
111 2jxx_A Nfatc2-interacting prot 27.2 1.2E+02 0.004 21.5 5.2 63 72-147 20-87 (97)
112 1v5t_A 8430435I17RIK protein; 27.2 41 0.0014 22.8 2.7 34 76-110 6-44 (90)
113 1wm3_A Ubiquitin-like protein 26.6 1E+02 0.0035 19.9 4.5 33 78-110 2-38 (72)
114 3kwl_A Uncharacterized protein 24.9 1.4E+02 0.0046 27.1 6.4 34 89-131 44-77 (514)
115 3a9j_A Ubiquitin; protein comp 24.7 94 0.0032 19.4 4.0 25 79-103 2-26 (76)
116 2ojr_A Ubiquitin; lanthide-bin 24.7 1.1E+02 0.0036 21.5 4.6 28 76-103 34-61 (111)
117 2kdb_A Homocysteine-responsive 24.0 92 0.0031 21.8 4.1 30 74-103 20-51 (99)
118 2kk8_A Uncharacterized protein 23.4 1.1E+02 0.0039 20.3 4.4 26 78-103 11-36 (84)
119 4fbj_B NEDD8; effector-HOST ta 23.0 95 0.0032 20.7 3.9 25 79-103 2-26 (88)
120 2djp_A Hypothetical protein SB 23.0 36 0.0012 22.3 1.6 22 90-111 16-37 (77)
121 1wf9_A NPL4 family protein; be 22.9 1.5E+02 0.005 20.7 5.0 25 78-103 8-33 (107)
122 1xn7_A Hypothetical protein YH 22.8 37 0.0013 23.1 1.6 26 99-125 35-65 (78)
123 2eke_C Ubiquitin-like protein 22.4 1.7E+02 0.0058 20.9 5.3 37 73-110 27-67 (106)
124 3k9o_B Ubiquitin, UBB+1; E2-25 22.3 99 0.0034 20.6 3.9 25 79-103 3-27 (96)
125 2klc_A Ubiquilin-1; ubiquitin- 22.2 1.3E+02 0.0045 20.7 4.6 29 74-103 22-50 (101)
126 3kyd_D Small ubiquitin-related 22.0 1.1E+02 0.0038 22.4 4.3 39 72-110 35-77 (115)
127 4a20_A Ubiquitin-like protein 21.5 1.1E+02 0.0037 21.4 4.0 32 72-103 14-47 (98)
128 2bwf_A Ubiquitin-like protein 21.2 1.1E+02 0.0037 19.3 3.7 25 78-103 5-29 (77)
No 1
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=99.97 E-value=1.5e-30 Score=202.24 Aligned_cols=110 Identities=39% Similarity=0.725 Sum_probs=101.3
Q ss_pred CCCCCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCC-cccCCCCCccccccEEEEecccccCCCCCCChHHHhhccc
Q 029354 72 NKQKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIE-LEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDL 150 (194)
Q Consensus 72 ~~~~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~-l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~ 150 (194)
|.++.|++|+|++++|++++|++++|+||||+|+++||+ +++.|+|.|.||||+|+|.+| +.+.++++++.|+++|+.
T Consensus 16 ~~~~~M~~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~gi~~~C~G~G~CgtC~v~v~~G-~~~~l~~~~~~E~~~L~~ 94 (126)
T 3hui_A 16 PRGSHMAKINFVDHTGETRTVEVEEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDEA-WREKVGGPSPMEEDMLDF 94 (126)
T ss_dssp CTTCSEEEEEEECTTSCEEEEEEETTSBHHHHHHTTTCTTCCCTTSSSSCCSTTEEEECGG-GHHHHCCCCHHHHHHHTT
T ss_pred CCCCCceEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCCCCCCCCCEEEECCC-cccccCCCCHHHhhhcCc
Confidence 678899999999889999999999999999999999999 999999999999999999865 346688899999999985
Q ss_pred cCCCCCCeEEeeeeEEecCCCceEEEcCCccc
Q 029354 151 AFGLTETSRLGCQIVASPELDGIRLAIPAATR 182 (194)
Q Consensus 151 a~~l~~g~RLaCQ~~~~~dldgl~V~lP~~~~ 182 (194)
+.++.+||||+||+++.+||||++|+||+.+|
T Consensus 95 ~~e~~~g~RLaCQ~~~~~dldgl~V~lp~~~r 126 (126)
T 3hui_A 95 GYDVRPNSRLSCQIKVSNELDGLIVTTPERQR 126 (126)
T ss_dssp SSSCCTTEEEGGGCBCCGGGTTEEEECCSCCC
T ss_pred hhhccCCeEEeeeCEECcCCCcEEEEecCcCC
Confidence 57899999999999999999999999998764
No 2
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=99.96 E-value=5.6e-30 Score=192.29 Aligned_cols=105 Identities=49% Similarity=0.894 Sum_probs=94.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcc--cCCCCCccccccEEEEecccccCCCCCCChHHHhhccc
Q 029354 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELE--GACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDL 150 (194)
Q Consensus 73 ~~~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~--~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~ 150 (194)
++..|++|+|++++|..++|++++|+|||++|+++||+++ +.|+|.|+||||||+|.+| +.+.+++++++|+++|+.
T Consensus 2 ~~~~m~~V~~~~~~g~~~~v~~~~g~tLL~aa~~~gi~i~~~~~Cgg~G~CgtC~v~v~~g-~~~~l~~~~~~E~~~L~~ 80 (108)
T 2bt6_A 2 SSGDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQH-IFEKLEAITDEENDMLDL 80 (108)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCTTTTTTSSSSSBSTTEEECCHH-HHTTSCCCCHHHHHHHTT
T ss_pred CCCceEEEEEECCCCCEEEEEECCCChHHHHHHHcCCCCCcccCCCCCcCcCCCEEEECcc-ccccCCCCCHHHHHHHhC
Confidence 3456999999988898889999999999999999999999 9999999999999999765 467889999999999996
Q ss_pred cCCCCCCeEEeeeeEEecCCCceEEEcC
Q 029354 151 AFGLTETSRLGCQIVASPELDGIRLAIP 178 (194)
Q Consensus 151 a~~l~~g~RLaCQ~~~~~dldgl~V~lP 178 (194)
+.++.+|||||||+++.+|+||++|++|
T Consensus 81 ~~~~~~g~rLaCq~~~~~d~d~~~V~~p 108 (108)
T 2bt6_A 81 AYGLTDRSRLGCQICLTKAMDNMTVRVP 108 (108)
T ss_dssp CTTCCTTEEEGGGCBCCGGGTTEEEECC
T ss_pred cccCCCCcEeeEEEEecCCCCCEEEEcC
Confidence 5789999999999999999999999987
No 3
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=99.96 E-value=3e-31 Score=205.29 Aligned_cols=111 Identities=49% Similarity=0.879 Sum_probs=26.1
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcc--cCCCCCccccccEEEEecccccCCCCCCChHHHhhcccc
Q 029354 74 QKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELE--GACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLA 151 (194)
Q Consensus 74 ~~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~--~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a 151 (194)
+++|++|+|++++|..++|++++|+|||++|+++||+++ +.|+|.|+||||||+|.+ ++++.++++++.|.++|+.+
T Consensus 2 ~~~~v~Vtf~~~~G~~~~v~~~~G~tLl~aa~~~gi~i~g~~~CgG~g~CgtC~v~v~~-~~~~~l~~~~~~E~~~L~~~ 80 (123)
T 3n9z_C 2 SEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFED-HIYEKLDAITDEENDMLDLA 80 (123)
T ss_dssp -----------------------------------------CTTCSSSSCSTTBC---------------CHHHHHHCC-
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCCCCEeCCCeeEEec-cccccCCCCChHHHhhhccc
Confidence 468999999999998889999999999999999999999 999999999999999964 57788999999999999866
Q ss_pred CCCCCCeEEeeeeEEecCCCceEEEcCCcccccc
Q 029354 152 FGLTETSRLGCQIVASPELDGIRLAIPAATRNFA 185 (194)
Q Consensus 152 ~~l~~g~RLaCQ~~~~~dldgl~V~lP~~~~n~~ 185 (194)
.++.++||||||+++.+|||||+|+||+..+++.
T Consensus 81 ~~~~~~~RLaCQ~~v~~~ld~l~V~ip~~~~~~~ 114 (123)
T 3n9z_C 81 YGLTDRSRLGCQICLTKSMDNMTVRVPETVADAR 114 (123)
T ss_dssp -------CBCC-----------------------
T ss_pred ccccCCeEEeeEeEEccCCCCEEEEECccccccc
Confidence 7899999999999999999999999999887653
No 4
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=99.96 E-value=1.6e-29 Score=190.18 Aligned_cols=107 Identities=49% Similarity=0.833 Sum_probs=97.0
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCC
Q 029354 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGL 154 (194)
Q Consensus 75 ~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l 154 (194)
..|++|+|++++|..++|++++|+|||++|+++||++++.|+|.|.||||+|+|.+|+ .+.++++++.|.++|+.+.++
T Consensus 3 ~~m~~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~i~~~C~g~G~CgtC~v~v~~g~-~~~l~~~~~~E~~~L~~~~~~ 81 (109)
T 2y5c_A 3 SDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDH-LDLLPPPEEREDDMLDMAPLL 81 (109)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCCCTTSSSSSCCTTEEEECHHH-HTTSCCCCHHHHHHHHTSTTC
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCcCccEEEECCcc-hhhcCCCCHHHHHHHhccccC
Confidence 3589999988899888899999999999999999999999998899999999998653 567889999999999854789
Q ss_pred CCCeEEeeeeEEecCCCceEEEcCCccc
Q 029354 155 TETSRLGCQIVASPELDGIRLAIPAATR 182 (194)
Q Consensus 155 ~~g~RLaCQ~~~~~dldgl~V~lP~~~~ 182 (194)
.+||||+||+++.+|+||++|++|+.++
T Consensus 82 ~~g~rLaCq~~~~~d~~~~~v~ip~~~~ 109 (109)
T 2y5c_A 82 QENSRLGCQIVLTPELEGAEFTLPKITR 109 (109)
T ss_dssp CTTEEEGGGCBCCGGGTTCEEECCSCCC
T ss_pred CCCcEeeEEeEEecCCCeEEEEecCCCC
Confidence 9999999999999999999999998654
No 5
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=99.96 E-value=2.5e-29 Score=188.57 Aligned_cols=102 Identities=32% Similarity=0.596 Sum_probs=94.3
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHCCCC-cccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCCC
Q 029354 79 NVTFVDKDGEEKNIKVPVGMSMLEAAHENDIE-LEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTET 157 (194)
Q Consensus 79 ~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~-l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~g 157 (194)
+|+|++++|+.++|++++|+|||++++++||+ +++.|+|.|.||||+|+|++|+ .+.++++++.|+++|+.+.++.+|
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~~gi~~i~~~C~G~G~CgtC~v~v~~g~-~~~l~~~~~~e~~~L~~~~~~~~g 80 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAF-ADRLPALSGDENDLLDSSDHRTPH 80 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHHHTTCTTCCCTTCSSSSCSTTEEEECGGG-GGGSCCCCHHHHHHHHTSTTCCTT
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCCCcCCCCCCCCCCCEEEECCcc-cccCCCCCHHHHHHhccccccCCC
Confidence 68999999999999999999999999999999 9999999999999999998763 567889999999999855789999
Q ss_pred eEEeeeeEEecCCCceEEEcCCcc
Q 029354 158 SRLGCQIVASPELDGIRLAIPAAT 181 (194)
Q Consensus 158 ~RLaCQ~~~~~dldgl~V~lP~~~ 181 (194)
|||+||+++.+||||++|++|+.+
T Consensus 81 ~rLaCq~~~~~dl~gl~v~ip~~~ 104 (104)
T 3lxf_A 81 SRLSCQITINDKLEGLEVEIAPED 104 (104)
T ss_dssp EEEGGGCBCCGGGTTCEEEECCCC
T ss_pred cEEEeeCEEccCCCCEEEEecCCC
Confidence 999999999999999999999753
No 6
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=99.94 E-value=4.2e-27 Score=175.86 Aligned_cols=102 Identities=37% Similarity=0.699 Sum_probs=92.2
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHCCCC-cccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCC-CC
Q 029354 79 NVTFVDKDGEEKNIKVPVGMSMLEAAHENDIE-LEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGL-TE 156 (194)
Q Consensus 79 ~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~-l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l-~~ 156 (194)
+|+|+.++|+.++|++++|+||||+|+++||+ +++.|+|.|.||||+|+|.+| +++.++++++.|+++|+..+++ .+
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLeaa~~~gi~~i~~~C~g~G~CgtC~v~v~~g-~~~~l~~~~~~e~~~L~~~~~~~~~ 80 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEA-FTDKVPAANEREIGMLESVTAELKP 80 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEECTT-TGGGSCCCCHHHHHHHTTCSSCCCT
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCCcCCCCCcccCcCEEEECCc-ccccCCCCCHHHHHHhhcccccCCC
Confidence 68887788988999999999999999999999 999999899999999999865 4678889999999999964557 99
Q ss_pred CeEEeeeeEEecCCCceEEEcCCcc
Q 029354 157 TSRLGCQIVASPELDGIRLAIPAAT 181 (194)
Q Consensus 157 g~RLaCQ~~~~~dldgl~V~lP~~~ 181 (194)
++||+||+++.+|++|++|++|+.+
T Consensus 81 g~rLaCq~~~~~d~~~l~v~~p~~~ 105 (106)
T 1xlq_A 81 NSRLCCQIIMTPELDGIVVDVPDRQ 105 (106)
T ss_dssp TEEEGGGCBCCGGGTTEEEECCSCC
T ss_pred CcEeeeeeEeecCCCCEEEEecCcc
Confidence 9999999999999999999999754
No 7
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=99.94 E-value=2.5e-27 Score=177.07 Aligned_cols=103 Identities=33% Similarity=0.687 Sum_probs=92.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCC-cccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCC-
Q 029354 78 INVTFVDKDGEEKNIKVPVGMSMLEAAHENDIE-LEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLT- 155 (194)
Q Consensus 78 i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~-l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~- 155 (194)
++|+|+.++|..++|++++|+||||+|+++||+ +++.|+|.|.||||+|+|++| +++.++++++.|+++|+..+++.
T Consensus 1 ~~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~g-~~~~l~~~~~~e~~~L~~~~~~~~ 79 (106)
T 1uwm_A 1 AKIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPA-WVDKLPKALPTETDMIDFAYEPNP 79 (106)
T ss_dssp CEEEEECTTCCEEEEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEECHH-HHTTSCCCCHHHHHHHTTSSSCCT
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCcccCCCCCCCcCcCEEEECCc-ccccCCCCCHHHHHHhcCccccCC
Confidence 368887788988999999999999999999999 999999899999999999865 35778899999999999644788
Q ss_pred CCeEEeeeeEEecCCCceEEEcCCcc
Q 029354 156 ETSRLGCQIVASPELDGIRLAIPAAT 181 (194)
Q Consensus 156 ~g~RLaCQ~~~~~dldgl~V~lP~~~ 181 (194)
+++||+||+++.+|+||++|++|+.+
T Consensus 80 ~g~rLaCq~~~~~d~~~l~v~~p~~~ 105 (106)
T 1uwm_A 80 ATSRLTCQIKVTSLLDGLVVHLPEKQ 105 (106)
T ss_dssp TTEEEGGGCBCCGGGTTEEEECCSCC
T ss_pred CCcEecccCEEccCCCCEEEEecCCC
Confidence 99999999999999999999999754
No 8
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=99.94 E-value=7.5e-27 Score=173.65 Aligned_cols=102 Identities=58% Similarity=0.950 Sum_probs=92.3
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCC
Q 029354 76 DMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLT 155 (194)
Q Consensus 76 ~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~ 155 (194)
.+++|+|.+.+|+.++|++++|+||||+|+++||++++.|+|.|.||+|+|+|.+|+ .+.++++++.|.++|+.+.++.
T Consensus 2 ~~~~v~~~~~~g~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~g~-~~~~~~~~~~E~~~L~~~~~~~ 80 (103)
T 2wlb_A 2 TGIKVFFVTPEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEH-YELLDPPEEDEEDMLDLAFGLE 80 (103)
T ss_dssp CCEEEEEECTTCCEEEEEECTTCBHHHHHHHTTCCCCCTTTTSSCCSTTEEEECHHH-HHHSCCCCHHHHHHHTTBTTCC
T ss_pred CceEEEEEeCCCCEEEEEECCCCHHHHHHHHcCCCcCcCCCCCCCcCCCEEEECCCc-hhccCCCCHHHHHHHhcccCCC
Confidence 467899986789889999999999999999999999999998999999999998663 4567888999999999656789
Q ss_pred CCeEEeeeeEEecCCCceEEEcC
Q 029354 156 ETSRLGCQIVASPELDGIRLAIP 178 (194)
Q Consensus 156 ~g~RLaCQ~~~~~dldgl~V~lP 178 (194)
+++||+||+++.+|+||++|++|
T Consensus 81 ~g~rLaCq~~~~~d~~~l~v~lp 103 (103)
T 2wlb_A 81 ETSRLGCQVLLRKDLDGIRVRIP 103 (103)
T ss_dssp TTEEEGGGCBCCGGGTTEEEECC
T ss_pred CCcEeeEeeEeCCCCCcEEEEcC
Confidence 99999999999999999999987
No 9
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=99.93 E-value=3.5e-26 Score=172.81 Aligned_cols=108 Identities=42% Similarity=0.698 Sum_probs=94.0
Q ss_pred cEEEEEEcCCC---CEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCC
Q 029354 77 MINVTFVDKDG---EEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFG 153 (194)
Q Consensus 77 ~i~Vt~~~~~G---~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~ 153 (194)
|++|+|++.+| ..++|++++|+||||+|+++||++++.|+|.|.||+|+|+|++|+ ..++++++.|+++|+...+
T Consensus 1 M~~vt~~~~~g~~~~~~~v~~~~g~tlL~aa~~~Gi~i~~~C~g~G~CgtC~v~v~~G~--~~~~~~~~~e~~~L~~~~~ 78 (113)
T 3ah7_A 1 MPLVTFLPHEKFCPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGF--DSLEEADELEEDMLDKAWG 78 (113)
T ss_dssp CCEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTCSSSSCSTTEEEEEESG--GGSCCCCHHHHHHHTTSTT
T ss_pred CCEEEEEcCCCcCCCCeEEEECCCCcHHHHHHHcCCCCCcCCCCCCCcCCCEEEEcCCc--ccCCCCCHHHHHhhhcccc
Confidence 67899987766 568999999999999999999999999998999999999998763 5688899999999985447
Q ss_pred CCCCeEEeeeeEEecCCCceEEEcCCcccccccCC
Q 029354 154 LTETSRLGCQIVASPELDGIRLAIPAATRNFAVDG 188 (194)
Q Consensus 154 l~~g~RLaCQ~~~~~dldgl~V~lP~~~~n~~~~~ 188 (194)
+.+++||+||+++.++ +++|++|..+.|.+.+|
T Consensus 79 ~~~g~rLaCq~~~~~~--dl~v~~~~~~~~~~~~~ 111 (113)
T 3ah7_A 79 LEAQSRLGCQVFVADE--DLTIEIPKYSLNHAAEA 111 (113)
T ss_dssp CCTTEEEGGGCBCCSS--CEEEECCSCCCCCCC--
T ss_pred cCCCcEEeeeCEEeCC--CEEEEECchhhhhhhcc
Confidence 8999999999999832 49999999999999888
No 10
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=99.93 E-value=2.8e-27 Score=176.55 Aligned_cols=102 Identities=28% Similarity=0.608 Sum_probs=91.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCC-cccCCCCCccccccEEEEecccccCCCCCCChHHHhhcc-ccCCCC
Q 029354 78 INVTFVDKDGEEKNIKVPVGMSMLEAAHENDIE-LEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLD-LAFGLT 155 (194)
Q Consensus 78 i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~-l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~-~a~~l~ 155 (194)
++|+|+.++|+.++|++++|+|||++|+++||+ +++.|+|.|.||||+|+|.+| +++.++++++.|+++|+ ...++.
T Consensus 1 ~~V~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~G-~~~~l~~~~~~e~~~L~~~~~~~~ 79 (105)
T 1b9r_A 1 PRVVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDA-WVEIVGEANPDENDLLQSTGEPMT 79 (105)
T ss_dssp CEEEECCTTTSCEEEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEECTT-THHHHTCCCTTHHHHHHTSCCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCcCcCCCCCCCcCcCEEEECCc-ccccCCCCCHHHHHHhhcccccCC
Confidence 368886678888999999999999999999999 999999899999999999865 34667889999999998 337889
Q ss_pred CCeEEeeeeEEecCCCceEEEcCCc
Q 029354 156 ETSRLGCQIVASPELDGIRLAIPAA 180 (194)
Q Consensus 156 ~g~RLaCQ~~~~~dldgl~V~lP~~ 180 (194)
+|+||+||+++.+|+|+++|++|+.
T Consensus 80 ~g~rLaCq~~~~~~~~~l~v~~p~~ 104 (105)
T 1b9r_A 80 AGTRLSCQVFIDPSMDGLIVRVPLP 104 (105)
T ss_dssp TTBSCGGGCCCCTTSTTEEEECCSC
T ss_pred CCcEeeeeCEecCCCCcEEEEecCC
Confidence 9999999999999999999999863
No 11
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=99.90 E-value=1.1e-23 Score=158.76 Aligned_cols=106 Identities=37% Similarity=0.616 Sum_probs=90.3
Q ss_pred cEEEEEEcCCC---CEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCC
Q 029354 77 MINVTFVDKDG---EEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFG 153 (194)
Q Consensus 77 ~i~Vt~~~~~G---~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~ 153 (194)
|++|+|+..+| ..++|++++|+||||+|+++|+++++.|+|.|.||+|+|+|.+|+ ..++++++.|.++|+.+.+
T Consensus 1 M~~i~~~~~~g~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~~G~Cg~C~v~v~~G~--~~~~~~~~~e~~~L~~~~~ 78 (111)
T 1i7h_A 1 MPKIVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGF--DSLPESSEQEDDMLDKAWG 78 (111)
T ss_dssp -CEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTSSSSCCSTTEEEEEECG--GGSCCCCHHHHHHHTTCTT
T ss_pred CCEEEEEeCCCcCCCCeEEEeCCCCcHHHHHHHcCCCCcccCCCCCcCCCCEEEEccCc--ccCCCCCHHHHHHhhhccc
Confidence 56888886544 458999999999999999999999999988999999999998764 4667888889999985457
Q ss_pred CCCCeEEeeeeEEe-cCCCceEEEcCCcccccccC
Q 029354 154 LTETSRLGCQIVAS-PELDGIRLAIPAATRNFAVD 187 (194)
Q Consensus 154 l~~g~RLaCQ~~~~-~dldgl~V~lP~~~~n~~~~ 187 (194)
+.+++||+||+++. +| ++|++|+.+.|+..+
T Consensus 79 ~~~g~rLaCq~~~~~~d---l~v~~~~~~~~~~~~ 110 (111)
T 1i7h_A 79 LEPESRLSCQARVTDED---LVVEIPRYTINHARE 110 (111)
T ss_dssp CCTTEEETTTCBCCSSC---EEEECCSCCCCTTCC
T ss_pred cCCCcEEEEEEEEeCCC---EEEEEChHHhhhhcc
Confidence 88999999999996 55 999999988887653
No 12
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=99.90 E-value=1e-23 Score=154.47 Aligned_cols=91 Identities=26% Similarity=0.498 Sum_probs=80.9
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHCCCC-cccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCCC
Q 029354 79 NVTFVDKDGEEKNIKVPVGMSMLEAAHENDIE-LEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTET 157 (194)
Q Consensus 79 ~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~-l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~g 157 (194)
+|+|. .+|+.++|++++|+||||+++++|++ +++.|+|.|.||+|+|+|.+| .++++++.|.++|+ ++.++
T Consensus 2 ~v~i~-~~g~~~~~~~~~g~tll~a~~~~gi~gi~~~C~G~G~Cg~C~v~v~~g----~~~~~~~~e~~~L~---~~~~g 73 (93)
T 1l5p_A 2 TITAV-KGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSG----KVAAAEDDEKEFLE---DQPAN 73 (93)
T ss_dssp EEEEE-ETTEEEEEECCTTEEHHHHHHTTTSSCCTTSCSSSSSSCCCEEEEEES----CCCCCCHHHHHHHT---TSCTT
T ss_pred eEEEE-eCCcEEEEEECCCChHHHHHHHcCCCcCCcCCCCcCCcCCCEEEECCC----cCCCCCHHHHHHhc---CCCCC
Confidence 34543 47877899999999999999999999 999999999999999999864 46778889999998 68999
Q ss_pred eEEeeeeEEecCCCceEEEc
Q 029354 158 SRLGCQIVASPELDGIRLAI 177 (194)
Q Consensus 158 ~RLaCQ~~~~~dldgl~V~l 177 (194)
+||+||+++.+|++|++|+|
T Consensus 74 ~rLaCq~~~~~d~~g~~v~~ 93 (93)
T 1l5p_A 74 ARLACAITLSGENDGAVFEL 93 (93)
T ss_dssp EEEGGGCEECGGGTTCEEEC
T ss_pred cEEeeECEECCCCCceEEEC
Confidence 99999999999999999985
No 13
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=99.82 E-value=8e-22 Score=145.17 Aligned_cols=94 Identities=22% Similarity=0.355 Sum_probs=79.3
Q ss_pred cEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCC
Q 029354 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTE 156 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~ 156 (194)
|++|+|.+++|..++|++++|+||||+|+++|+++++.| |.|.||+|+|+|++|+. ...+.|..+|+. .++.+
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C-~~G~Cg~C~v~v~~G~~-----~~~~~e~~~L~~-~~~~~ 76 (98)
T 1jq4_A 4 VHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSC-REGGCATCKALCSEGDY-----DLKGCSVQALPP-EEEEE 76 (98)
T ss_dssp EEEEEEEETTTEEEEEEEESCCTHHHHHHHHTCCCCCSC-CSSCCCCCCBCEEECCC-----CCCCSCTTTSCH-HHHHH
T ss_pred cEEEEEEecCCCcEEEEeCCCChHHHHHHHcCCCCcCCC-CCCCCCCCEEEEEcCcc-----ccCcccccccCH-HHhcC
Confidence 788999877777799999999999999999999999999 69999999999987753 122345667763 56778
Q ss_pred CeEEeeeeEEecCCCceEEEcCCc
Q 029354 157 TSRLGCQIVASPELDGIRLAIPAA 180 (194)
Q Consensus 157 g~RLaCQ~~~~~dldgl~V~lP~~ 180 (194)
|+||+||+++.+| ++|++|..
T Consensus 77 g~~LaCq~~~~~d---~~v~~~~~ 97 (98)
T 1jq4_A 77 GLVLLCRTYPKTD---LEIELPYT 97 (98)
T ss_dssp HCBCTTTCCSSCC---SEEECSCC
T ss_pred CcEEEeeCEECCC---EEEEecCC
Confidence 9999999999988 89999864
No 14
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=99.82 E-value=7.9e-21 Score=139.97 Aligned_cols=92 Identities=22% Similarity=0.361 Sum_probs=76.7
Q ss_pred EEEEEEcCCCC-EEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCC
Q 029354 78 INVTFVDKDGE-EKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTE 156 (194)
Q Consensus 78 i~Vt~~~~~G~-~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~ 156 (194)
++|+|+.++|. .+++++++|+||||+++++|+++++.|+ .|.||+|+|+|++|+. ...|..+|+. .++.+
T Consensus 3 ~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~-------~~~e~~~L~~-~e~~~ 73 (98)
T 1czp_A 3 FKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCR-AGACSTCAGKLVSGTV-------DQSDQSFLDD-DQIEA 73 (98)
T ss_dssp EEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESCE-------ECTTCCSSCH-HHHHT
T ss_pred eEEEEEeCCCCCcEEEEeCCCCCHHHHHHHcCCCccCCCC-CCCCCCCeEEEccCCc-------CccccccCCH-HHhhC
Confidence 57888765654 5899999999999999999999999997 8999999999987743 2234556763 55678
Q ss_pred CeEEeeeeEEecCCCceEEEcCCcc
Q 029354 157 TSRLGCQIVASPELDGIRLAIPAAT 181 (194)
Q Consensus 157 g~RLaCQ~~~~~dldgl~V~lP~~~ 181 (194)
|+||+||+++.+| ++|++|+..
T Consensus 74 g~~LaCq~~~~~d---~~v~~~~~~ 95 (98)
T 1czp_A 74 GYVLTCVAYPTSD---VVIQTHKEE 95 (98)
T ss_dssp TEEEGGGCEESSC---EEEECCCTT
T ss_pred CeEEeeeCEECCC---EEEEecccc
Confidence 9999999999998 999998754
No 15
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.82 E-value=7.1e-21 Score=138.87 Aligned_cols=92 Identities=24% Similarity=0.384 Sum_probs=76.1
Q ss_pred cEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCC
Q 029354 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTE 156 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~ 156 (194)
+++|+|..++| .+++++++|+||||+|+++||++++.|+ .|.||+|+|+|.+|+. ...|..+|+. .++.+
T Consensus 1 ~~~v~~~~~~g-~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~-------~~~~~~~L~~-~~~~~ 70 (95)
T 1frr_A 1 AYKTVLKTPSG-EFTLDVPEGTTILDAAEEAGYDLPFSCR-AGACSSCLGKVVSGSV-------DESEGSFLDD-GQMEE 70 (95)
T ss_dssp CEEEEEEETTE-EEEEEECTTCCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESCE-------ECTTCCSCCH-HHHHT
T ss_pred CeEEEEEeCCC-cEEEEeCCCCcHHHHHHHcCCCCCCCCC-CcCCCCCEEEEEeCCc-------cccccccCCH-HHHhC
Confidence 35788865566 6899999999999999999999999996 8999999999987643 2234566764 55678
Q ss_pred CeEEeeeeEEecCCCceEEEcCCcc
Q 029354 157 TSRLGCQIVASPELDGIRLAIPAAT 181 (194)
Q Consensus 157 g~RLaCQ~~~~~dldgl~V~lP~~~ 181 (194)
++||+||+.+.+| ++|++|+..
T Consensus 71 g~~LaC~~~~~~~---~~v~~~~~~ 92 (95)
T 1frr_A 71 GFVLTCIAIPESD---LVIETHKEE 92 (95)
T ss_dssp TEEETTTCEESSC---EEEECCCTT
T ss_pred CcEEeeECEECCC---EEEEEcchh
Confidence 9999999999987 999998754
No 16
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=99.82 E-value=5.1e-21 Score=140.93 Aligned_cols=94 Identities=21% Similarity=0.357 Sum_probs=77.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCCC
Q 029354 78 INVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTET 157 (194)
Q Consensus 78 i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~g 157 (194)
++|+|..++| .+++++++|+||||+|+++|+++++.|+ .|.||+|+|+|++|+. ...|..+|+. .++.+|
T Consensus 3 ~~v~~~~~~~-~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~-------~~~e~~~L~~-~e~~~g 72 (97)
T 1a70_A 3 YKVTLVTPTG-NVEFQCPDDVYILDAAEEEGIDLPYSCR-AGSCSSCAGKLKTGSL-------NQDDQSFLDD-DQIDEG 72 (97)
T ss_dssp EEEEEEETTE-EEEEEEETTSCHHHHHHHTTCCCCCSSS-SSCSSTTEEEEEESCE-------ECTTCCSSCH-HHHHHT
T ss_pred EEEEEEeCCc-eEEEEeCCCCcHHHHHHHcCCCcccCCC-CcCCCCCeEEEccCCc-------CccccccCCH-HHhhCC
Confidence 5788864455 5899999999999999999999999997 8999999999987642 2345567764 556789
Q ss_pred eEEeeeeEEecCCCceEEEcCCccccc
Q 029354 158 SRLGCQIVASPELDGIRLAIPAATRNF 184 (194)
Q Consensus 158 ~RLaCQ~~~~~dldgl~V~lP~~~~n~ 184 (194)
+||+||+++.+| ++|++|+..+.+
T Consensus 73 ~~LaCq~~~~~d---~~v~~~~~~~~~ 96 (97)
T 1a70_A 73 WVLTCAAYPVSD---VTIETHKKEELT 96 (97)
T ss_dssp EEEGGGCEESSC---EEEECCCGGGCC
T ss_pred eEEEeECEECCC---EEEEeCchhhcc
Confidence 999999999998 999999876543
No 17
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=99.82 E-value=7.4e-21 Score=139.15 Aligned_cols=91 Identities=23% Similarity=0.390 Sum_probs=75.6
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCCCe
Q 029354 79 NVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTETS 158 (194)
Q Consensus 79 ~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~g~ 158 (194)
+|+|..++| .+++++++|+||||+|+++|+++++.|+ .|.||+|+|+|++|+. ...|..+|+. .++.+|+
T Consensus 2 ~v~~~~~~g-~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~-------~~~e~~~L~~-~e~~~g~ 71 (94)
T 1awd_A 2 KVTLKTPSG-EETIECPEDTYILDAAEEAGLDLPYSCR-AGACSSCAGKVESGEV-------DQSDQSFLDD-AQMGKGF 71 (94)
T ss_dssp EEEEEETTE-EEEEECCTTSCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESCE-------ECTTCCSSCH-HHHHTTE
T ss_pred EEEEEeCCC-cEEEEECCCCcHHHHHHHcCCCCCcCCC-CCcCCCCEEEEEeCCc-------CccccccCCH-HHHhCCc
Confidence 577765555 5899999999999999999999999997 8999999999987742 2335567763 5667899
Q ss_pred EEeeeeEEecCCCceEEEcCCccc
Q 029354 159 RLGCQIVASPELDGIRLAIPAATR 182 (194)
Q Consensus 159 RLaCQ~~~~~dldgl~V~lP~~~~ 182 (194)
||+||+.+.+| ++|++|+..+
T Consensus 72 ~LaCq~~~~~d---~~i~~~~~~~ 92 (94)
T 1awd_A 72 VLTCVAYPTSD---VTILTHQEAA 92 (94)
T ss_dssp EEGGGCEESSC---EEEECCCGGG
T ss_pred EEeeECEECCC---EEEEecchhc
Confidence 99999999987 9999987653
No 18
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.81 E-value=1.2e-20 Score=137.94 Aligned_cols=91 Identities=21% Similarity=0.364 Sum_probs=75.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCC
Q 029354 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTE 156 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~ 156 (194)
+++|+|..++| .+++++++|+||||+++++| ++++.|+ .|.||+|+|+|++|+. ...|..+|+. .++++
T Consensus 1 ~~~V~~~~~~~-~~~~~~~~g~tlL~a~~~~g-~i~~~C~-~G~Cg~C~v~v~~G~~-------~~~e~~~L~~-~~~~~ 69 (93)
T 1wri_A 1 AYKVTLKTPDG-DITFDVEPGERLIDIGSEKA-DLPLSCQ-AGACSTCLGKIVSGTV-------DQSEGSFLDD-EQIEQ 69 (93)
T ss_dssp CEEEEEEETTE-EEEEEECTTSCHHHHHHHHS-CCCCSSS-SSSSSTTEEEEEESCE-------ECTTCCSCCH-HHHHT
T ss_pred CEEEEEEECCC-eEEEEECCCCcHHHHHHHCc-CCCCCCC-CCCCCCCEEEEecCcc-------CccccccCCH-HHHhC
Confidence 46788875555 68999999999999999999 9999997 8999999999987643 2335567763 56778
Q ss_pred CeEEeeeeEEecCCCceEEEcCCcc
Q 029354 157 TSRLGCQIVASPELDGIRLAIPAAT 181 (194)
Q Consensus 157 g~RLaCQ~~~~~dldgl~V~lP~~~ 181 (194)
|+||+||+++.+| ++|++|+..
T Consensus 70 g~~LaCq~~~~~d---~~v~~~~~~ 91 (93)
T 1wri_A 70 GYVLTCIAIPESD---VVIETHKED 91 (93)
T ss_dssp TEEETTTCEESSC---EEEECCCGG
T ss_pred CcEEeeeCEECCC---EEEEecccc
Confidence 9999999999998 999999754
No 19
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=99.81 E-value=2.2e-20 Score=137.33 Aligned_cols=92 Identities=22% Similarity=0.333 Sum_probs=75.8
Q ss_pred EEEEEEcCCC-CEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCC
Q 029354 78 INVTFVDKDG-EEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTE 156 (194)
Q Consensus 78 i~Vt~~~~~G-~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~ 156 (194)
++|+|..+++ ..++|++++|+||||+++++||++++.|+ .|.||+|+|+|++|+. ...|..+|+. .++.+
T Consensus 3 ~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~-------~~~e~~~L~~-~e~~~ 73 (98)
T 1frd_A 3 YQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCH-SGSCSSCVGKVVEGEV-------DQSDQIFLDD-EQMGK 73 (98)
T ss_dssp EEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESCE-------ECTTCCSCCH-HHHHT
T ss_pred eEEEEEeCCCCCCEEEEeCCCCcHHHHHHHcCCCcccCCC-CCCCCCCEEEEEeCCc-------cccccccCCH-HHhhC
Confidence 5788875443 25899999999999999999999999996 8999999999987643 2334567764 55678
Q ss_pred CeEEeeeeEEecCCCceEEEcCCcc
Q 029354 157 TSRLGCQIVASPELDGIRLAIPAAT 181 (194)
Q Consensus 157 g~RLaCQ~~~~~dldgl~V~lP~~~ 181 (194)
|+||+||+++.+| ++|++|+..
T Consensus 74 g~~LaC~~~~~~d---~~v~~~~~~ 95 (98)
T 1frd_A 74 GFALLCVTYPRSN---CTIKTHQEP 95 (98)
T ss_dssp TEEEGGGCEESSS---EEEECCCGG
T ss_pred CcEEEeECEECCC---EEEEecchh
Confidence 9999999999987 999998754
No 20
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=99.81 E-value=1.3e-20 Score=138.95 Aligned_cols=93 Identities=22% Similarity=0.380 Sum_probs=76.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCCC
Q 029354 78 INVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTET 157 (194)
Q Consensus 78 i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~g 157 (194)
++|+|...+| .++|++++|+||||+++++|+++++.|+ .|.||+|+|+|++|+. ...|..+|+. .++++|
T Consensus 3 ~~v~~~~~~~-~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~-------~~~e~~~L~~-~e~~~g 72 (98)
T 1iue_A 3 YNITLRTNDG-EKKIECNEDEYILDASERQNVELPYSCR-GGSCSTCAAKLVEGEV-------DNDDQSYLDE-EQIKKK 72 (98)
T ss_dssp EEEEEEETTE-EEEEEEETTSCHHHHHHHTTCCCCCSSC-SSSSSTTEEEEEESCE-------ECTTCCSSCH-HHHHTT
T ss_pred EEEEEEeCCC-eEEEEeCCCCcHHHHHHHcCCCCCCCCC-CCcCCCCEEEEeeCCc-------cccccccCCH-HHHhCC
Confidence 5677775444 6899999999999999999999999997 8999999999987743 2335567764 556789
Q ss_pred eEEeeeeEEecCCCceEEEcCCcccc
Q 029354 158 SRLGCQIVASPELDGIRLAIPAATRN 183 (194)
Q Consensus 158 ~RLaCQ~~~~~dldgl~V~lP~~~~n 183 (194)
+||+||+++.+| ++|++|+..+.
T Consensus 73 ~~LaCq~~~~~d---~~i~~~~~~~~ 95 (98)
T 1iue_A 73 YILLCTCYPKSD---CVIETHKEDEL 95 (98)
T ss_dssp EEEGGGCEESSC---EEEECCCHHHH
T ss_pred eEEEeECEECCC---eEEEeCChHhh
Confidence 999999999987 99999986543
No 21
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.77 E-value=3.2e-19 Score=155.04 Aligned_cols=98 Identities=20% Similarity=0.307 Sum_probs=82.7
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCC
Q 029354 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGL 154 (194)
Q Consensus 75 ~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l 154 (194)
|.|++|+|.+++|..+++++++|+||||+|+++||++++.|+ .|.||+|+|+|++|+. .++ +.+.|.++|+. .++
T Consensus 1 m~~~~v~~~~~~~~~~~~~~~~g~tll~a~~~~gi~i~~~C~-~g~Cg~C~v~v~~G~~--~~~-~~~~~~~~l~~-~~~ 75 (338)
T 1krh_A 1 MSNHQVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCR-EGECGTCRAFCESGNY--DMP-EDNYIEDALTP-EEA 75 (338)
T ss_dssp -CCEEEEEECTTSCEEEEEECTTCCHHHHHHHTTCCCSCSCS-SSSSCTTEEEEEECCE--ECC-GGGSCTTTCCH-HHH
T ss_pred CCceEEEEEEcCCCcEEEEeCCCCcHHHHHHHcCCCcccCCC-CcCCCCCEEEEecCcE--ecc-cCccccccCCH-HHH
Confidence 457899998777888999999999999999999999999996 8999999999987753 121 24456778874 677
Q ss_pred CCCeEEeeeeEEecCCCceEEEcCCc
Q 029354 155 TETSRLGCQIVASPELDGIRLAIPAA 180 (194)
Q Consensus 155 ~~g~RLaCQ~~~~~dldgl~V~lP~~ 180 (194)
.+|+||+||+.+.+| ++|++|..
T Consensus 76 ~~g~~LaCq~~~~~~---~~v~~~~~ 98 (338)
T 1krh_A 76 QQGYVLACQCRPTSD---AVFQIQAS 98 (338)
T ss_dssp HHTEEETTTCEESSS---EEEEESSC
T ss_pred hCCeEEEEeCEECCC---eEEEEecc
Confidence 889999999999988 89999875
No 22
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=99.72 E-value=3.4e-18 Score=162.25 Aligned_cols=94 Identities=23% Similarity=0.391 Sum_probs=79.6
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCC
Q 029354 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGL 154 (194)
Q Consensus 75 ~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l 154 (194)
|.|++|+|. ++| +++++++|+||||+++++|+++++.|+|.|.||||+|+|++|+. +..|..+|+. .++
T Consensus 1 M~m~~V~~~-~sg--~~v~v~~G~tLLeAa~~aGi~ip~~C~G~G~CGtC~v~V~~G~v-------~~~e~~~Ls~-~e~ 69 (631)
T 3zyy_X 1 MAEYKVLFK-PDQ--KEVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQK-------RVESYGKLKQ-EEI 69 (631)
T ss_dssp --CEEEEEE-TTT--EEEEECTTSCHHHHHHHHTCCCCCSCCCSSCCSTTEEEEEESCE-------EESCCTTCCH-HHH
T ss_pred CCceEEEEe-cCC--eEEEECCCCcHHHHHHHcCCCCCcCCCCCCcCCCCEEEEeeCcc-------cccccccCCH-HHh
Confidence 568999997 567 79999999999999999999999999999999999999998753 2234567763 567
Q ss_pred CCCeEEeeeeEEecCCCceEEEcCCccc
Q 029354 155 TETSRLGCQIVASPELDGIRLAIPAATR 182 (194)
Q Consensus 155 ~~g~RLaCQ~~~~~dldgl~V~lP~~~~ 182 (194)
.+|+||+||+++.+| ++|++|+.++
T Consensus 70 ~~G~rLaCqa~~~sD---l~Ielp~~~~ 94 (631)
T 3zyy_X 70 AQGYVLACQTYPESD---LIIEIPFDSR 94 (631)
T ss_dssp HTTEEETTTEEECSS---EEEECCTTSS
T ss_pred cCCcEEeeeCEECCC---EEEEecchhh
Confidence 889999999999998 9999998654
No 23
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=99.70 E-value=2.3e-18 Score=133.69 Aligned_cols=92 Identities=20% Similarity=0.308 Sum_probs=71.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCC
Q 029354 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTE 156 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~ 156 (194)
|.+|++. .+| ..++.+++|+|||++++++|+++++.| |.|.||+|+|+|++|+. ...|..+|+..+...+
T Consensus 27 m~~i~i~-~~g-~~~v~v~~g~tlL~aa~~~Gi~i~~~C-~~G~CgtC~v~v~~G~v-------~~~e~~~L~~~e~~~~ 96 (128)
T 1doi_A 27 ASDMDLD-DED-YGSLEVNEGEYILEAAEAQGYDWPFSC-RAGACANCAAIVLEGDI-------DMDMQQILSDEEVEDK 96 (128)
T ss_dssp HHHSCCC-TTT-EEEEECCTTSCHHHHHHHTTCCCCCSS-SSSSSSTTEEEEEESCE-------EECCCSSSCHHHHHTS
T ss_pred ccEEEEE-eCC-cEEEEECCCCcHHHHHHHcCCCCccCC-CccCCCCCEeEEecCCc-------CchhhccCCHhHhccC
Confidence 5556653 466 238999999999999999999999999 58999999999997753 1234556663233678
Q ss_pred CeEEeeeeEEecCCCceEEEcCCc
Q 029354 157 TSRLGCQIVASPELDGIRLAIPAA 180 (194)
Q Consensus 157 g~RLaCQ~~~~~dldgl~V~lP~~ 180 (194)
|+||+||+++.+| .++|++...
T Consensus 97 g~rLaCq~~~~~d--~i~i~~~~~ 118 (128)
T 1doi_A 97 NVRLTCIGSPDAD--EVKIVYNAK 118 (128)
T ss_dssp CEEEGGGEEECSS--EEEEEECGG
T ss_pred CEEEEEEeEEcCC--eEEEEecCC
Confidence 9999999999987 578876544
No 24
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.56 E-value=3.1e-15 Score=129.67 Aligned_cols=87 Identities=17% Similarity=0.329 Sum_probs=69.9
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCC
Q 029354 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGL 154 (194)
Q Consensus 75 ~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l 154 (194)
...++|+|. .+| +++++++|+||||+++++|+++++.| +.|.||+|+|+|++|+.. . .+ ..|+. .+.
T Consensus 235 ~~~~~v~~~-~~~--~~~~~~~~~~ll~a~~~~g~~~~~~C-~~G~Cg~C~~~v~~G~~~--~-----~~-~~l~~-~e~ 301 (321)
T 2pia_A 235 NTPFTVRLS-RSG--TSFEIPANRSILEVLRDANVRVPSSC-ESGTCGSCKTALCSGEAD--H-----RD-MVLRD-DEK 301 (321)
T ss_dssp CCCEEEEET-TTC--CEEEECTTSCHHHHHHHTTCCCCCSC-SSSSSCTTEEEEEESCEE--C-----CC-SSCCT-TTT
T ss_pred CccEEEEEe-CCC--eEEEECCCCcHHHHHHHcCCCCCCCC-CCCCCCCCEEEEecCccc--c-----cc-CCCCh-HHH
Confidence 456888875 455 68999999999999999999999999 589999999999988642 1 12 46764 556
Q ss_pred CCCeEEeeeeEEecCCCceEEEc
Q 029354 155 TETSRLGCQIVASPELDGIRLAI 177 (194)
Q Consensus 155 ~~g~RLaCQ~~~~~dldgl~V~l 177 (194)
+|+||+||+++.+| .++|++
T Consensus 302 -~g~~L~C~~~~~~d--~~~i~l 321 (321)
T 2pia_A 302 -GTQIMVCVSRAKSA--ELVLDL 321 (321)
T ss_dssp -TTEEETTTCEESSS--EEEECC
T ss_pred -CCeEEEeEeEECCC--cEEEeC
Confidence 99999999999986 366653
No 25
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=98.58 E-value=7.6e-08 Score=92.99 Aligned_cols=85 Identities=19% Similarity=0.360 Sum_probs=59.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCC-----CCCccccccEEEEecccccCCCCCCChHHH-hhccc
Q 029354 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGAC-----EGSLACSTCHVIVMDMDYYNKLEDPTDEEN-DMLDL 150 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~C-----gG~G~CGTC~V~V~~ge~~~~l~~~~~~E~-~~L~~ 150 (194)
|++|++ || +++++++|+|||++++++||+||+.| ++.|+|+.|.|.|. +.. .+.|. .+++.
T Consensus 1 mv~i~i---dg--~~~~v~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~-~~~-------~~~~g~~~~~~ 67 (783)
T 3i9v_3 1 MVRVKV---ND--RIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIG-LPK-------KGPDGKPLLNE 67 (783)
T ss_dssp CEEEEC---SS--CEEEECTTCBHHHHHHHTTCCCCCSSCCTTSCCCCCSCCSEEEEE-CC-------------------
T ss_pred CeEEEE---CC--EEEEeCCCChHHHHHHHhCCCccccCCCCCCCCCcccCCcEEEec-ccc-------ccccccccccc
Confidence 567765 57 58999999999999999999999999 56899999999994 211 01111 12221
Q ss_pred cCC-----CCCCeEEeeeeEEecCCCceEEEcC
Q 029354 151 AFG-----LTETSRLGCQIVASPELDGIRLAIP 178 (194)
Q Consensus 151 a~~-----l~~g~RLaCQ~~~~~dldgl~V~lP 178 (194)
++ -.....+||++.+.. ||+|+..
T Consensus 68 -~G~~~~~~~~~~~~aC~t~v~~---gm~v~t~ 96 (783)
T 3i9v_3 68 -KGEPEIQWQPKLAASCVTAVAD---GMVVDTL 96 (783)
T ss_dssp ------CCBCSSCEETTTCBCCS---SEEEESS
T ss_pred -ccccccccCCCcccccCCCCCC---CCEEEEC
Confidence 11 134678999999886 5999864
No 26
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=98.35 E-value=7.2e-07 Score=74.34 Aligned_cols=61 Identities=18% Similarity=0.340 Sum_probs=48.4
Q ss_pred EEEEEeCCCchHHHHHHHCCC------CcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCCCeEEee
Q 029354 89 EKNIKVPVGMSMLEAAHENDI------ELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTETSRLGC 162 (194)
Q Consensus 89 ~~~v~v~~GetLLdaa~~~gI------~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~g~RLaC 162 (194)
.+++++++|+||||+|+++|+ .....| +.|.||+|.|.| +|. .+|||
T Consensus 25 ~~~~~~~~~~tll~al~~~~~~~~p~l~~~~~c-~~G~Cg~C~v~v-~G~-------------------------~~~aC 77 (243)
T 1kf6_B 25 FYEVPYDATTSLLDALGYIKDNLAPDLSYRWSC-RMAICGSCGMMV-NNV-------------------------PKLAC 77 (243)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTCTTCCCCCCC-SSSSSCCCEEEE-TTE-------------------------EEEGG
T ss_pred EEEEecCCCChHHHHHHHcCcccCCCcccccCC-CCCcCCCCEeEE-CCE-------------------------EEeee
Confidence 378899999999999999983 245689 589999999998 552 27899
Q ss_pred eeEEecCCCceEEE
Q 029354 163 QIVASPELDGIRLA 176 (194)
Q Consensus 163 Q~~~~~dldgl~V~ 176 (194)
++.+....++|+|+
T Consensus 78 ~~~~~~~~~~~~i~ 91 (243)
T 1kf6_B 78 KTFLRDYTDGMKVE 91 (243)
T ss_dssp GCBGGGCTTCEEEE
T ss_pred eeEHhhCCCcEEEE
Confidence 98887654557776
No 27
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=98.34 E-value=9.3e-07 Score=82.81 Aligned_cols=68 Identities=19% Similarity=0.412 Sum_probs=55.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCC-----C-CccccccEEEEecccccCCCCCCChHHHhhccc
Q 029354 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACE-----G-SLACSTCHVIVMDMDYYNKLEDPTDEENDMLDL 150 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~Cg-----G-~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~ 150 (194)
|++|++ +| +.+++++|+|||++++++|+.+|+.|. + .|.||.|.|.| +|.
T Consensus 1 mv~~~i---ng--~~v~v~~g~tiL~a~~~~gi~ip~lC~~~~~~~~~G~Cg~C~V~v-~g~------------------ 56 (574)
T 3c8y_A 1 MKTIII---NG--VQFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEV-EGT------------------ 56 (574)
T ss_dssp CEEEEE---TT--EEEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEE-TTT------------------
T ss_pred CeEEEE---CC--EEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCcccCCCCEEEe-CCC------------------
Confidence 456654 57 788999999999999999999999887 6 89999999998 431
Q ss_pred cCCCCCCeEEeeeeEEecCCCceEEEc
Q 029354 151 AFGLTETSRLGCQIVASPELDGIRLAI 177 (194)
Q Consensus 151 a~~l~~g~RLaCQ~~~~~dldgl~V~l 177 (194)
+ .++||++.+.. ||+|..
T Consensus 57 -----~-~~~aC~t~v~~---gm~V~T 74 (574)
T 3c8y_A 57 -----G-LVTACDTLIED---GMIINT 74 (574)
T ss_dssp -----E-EEEGGGCBCCT---TCEEES
T ss_pred -----c-ccccCCCCccc---ceeEEe
Confidence 1 57899999874 688874
No 28
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=98.31 E-value=1.4e-06 Score=69.80 Aligned_cols=63 Identities=21% Similarity=0.443 Sum_probs=51.4
Q ss_pred CCCEEEEEeCCCchHHHHHHHC-CCC-cccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCCCeEEeee
Q 029354 86 DGEEKNIKVPVGMSMLEAAHEN-DIE-LEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTETSRLGCQ 163 (194)
Q Consensus 86 ~G~~~~v~v~~GetLLdaa~~~-gI~-l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~g~RLaCQ 163 (194)
+|+.+++.+++|+|||++++++ |+. .+..|+ .|.||+|.|.| +|. .++||+
T Consensus 17 ng~~~~~~v~~~~tlL~~Lr~~~gl~g~~~~C~-~G~CGaC~V~v-dG~-------------------------~v~sC~ 69 (168)
T 1t3q_A 17 NGKPRVFYVEPRMHLADALREVVGLTGTKIGCE-QGVCGSCTILI-DGA-------------------------PMRSCL 69 (168)
T ss_dssp TTEEEEEEECTTSBHHHHHHHTTCCTTSCCSCS-SSSSCTTEEEE-TTE-------------------------EEEGGG
T ss_pred CCEEEEEecCCCCcHHHHHHhcCCCCccccCCC-CCCCCCcEEEE-CCC-------------------------Eeechh
Confidence 6877888999999999999997 997 889996 89999999999 541 267888
Q ss_pred eEEecCCCceEEE
Q 029354 164 IVASPELDGIRLA 176 (194)
Q Consensus 164 ~~~~~dldgl~V~ 176 (194)
+.+.. ++|+.|.
T Consensus 70 ~~~~~-~~G~~v~ 81 (168)
T 1t3q_A 70 TLAVQ-AEGCSIE 81 (168)
T ss_dssp SBGGG-GTTCEEE
T ss_pred hHHHH-hCCCeEE
Confidence 87763 4567664
No 29
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=98.09 E-value=5.1e-06 Score=69.16 Aligned_cols=41 Identities=15% Similarity=0.388 Sum_probs=33.8
Q ss_pred EEEEEeCCCchHHHHHHHCC------CCcccCCCCCccccccEEEEecc
Q 029354 89 EKNIKVPVGMSMLEAAHEND------IELEGACEGSLACSTCHVIVMDM 131 (194)
Q Consensus 89 ~~~v~v~~GetLLdaa~~~g------I~l~~~CgG~G~CGTC~V~V~~g 131 (194)
.++|++++|+||||++++.+ +...+.|+ .|.||+|.|.| +|
T Consensus 25 ~~~v~~~~~~tlL~~l~~~~~~~~~~l~~~~~c~-~g~Cg~C~v~i-~G 71 (241)
T 2bs2_B 25 EYKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCR-AGICGSCGMMI-NG 71 (241)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHTCTTCCCCCSSS-SSSSCTTEEEE-TT
T ss_pred EEEEeCCCCChHHHHHHHhchhcCCCCccCCCCC-CCCCCCCEeEE-CC
Confidence 36788999999999998754 33456896 89999999999 65
No 30
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=97.92 E-value=2.1e-05 Score=62.89 Aligned_cols=50 Identities=20% Similarity=0.490 Sum_probs=41.2
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHC-CC-CcccCCCCCccccccEEEEecc
Q 029354 79 NVTFVDKDGEEKNIKVPVGMSMLEAAHEN-DI-ELEGACEGSLACSTCHVIVMDM 131 (194)
Q Consensus 79 ~Vt~~~~~G~~~~v~v~~GetLLdaa~~~-gI-~l~~~CgG~G~CGTC~V~V~~g 131 (194)
.|+|. -+|+.+++++.++++||++++++ |+ .....|+ .|.||.|.|.| +|
T Consensus 5 ~i~~~-vNG~~~~v~v~p~~tLLd~LR~~lgltgtk~gC~-~G~CGACtV~v-dG 56 (160)
T 3hrd_D 5 TINLN-LNGEARSIVTEPNKRLLDLLREDFGLTSVKEGCS-EGECGACTVIF-NG 56 (160)
T ss_dssp EEEEE-ETTEEEEEEECSSSBHHHHHHTTSCCTTSCCSSS-SSSSCTTEEEE-TT
T ss_pred eEEEE-ECCEEEEEecCCCCCHHHHHHHhcCCCccccccC-CCCCCCCEEEE-CC
Confidence 45554 26888899999999999999986 76 4778895 89999999999 54
No 31
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=97.92 E-value=1.3e-05 Score=66.44 Aligned_cols=41 Identities=12% Similarity=0.284 Sum_probs=34.7
Q ss_pred EEEEEeCC--CchHHHHHHHCC-----CCcccCCCCCccccccEEEEecc
Q 029354 89 EKNIKVPV--GMSMLEAAHEND-----IELEGACEGSLACSTCHVIVMDM 131 (194)
Q Consensus 89 ~~~v~v~~--GetLLdaa~~~g-----I~l~~~CgG~G~CGTC~V~V~~g 131 (194)
.++|++++ |+||||+|++.+ +...+.|+ .|.||.|.|.| +|
T Consensus 22 ~~~v~~~~~~~~tll~~l~~~~~~~~~l~~~~~C~-~g~Cg~C~v~v-~G 69 (238)
T 2wdq_B 22 DYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCR-EGVCGSDGLNM-NG 69 (238)
T ss_dssp EEEEECCTTCCCBHHHHHHHHHHHCTTCCCCCSSS-SSSSCTTEEEE-TT
T ss_pred EEEeecCCCCCChHHHHHHHhcccCCCccccccCC-CCCCCCCEEEE-CC
Confidence 36788888 999999999987 44567896 89999999999 55
No 32
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=97.88 E-value=2.9e-05 Score=62.33 Aligned_cols=50 Identities=16% Similarity=0.358 Sum_probs=40.0
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHC-CCC-cccCCCCCccccccEEEEecc
Q 029354 79 NVTFVDKDGEEKNIKVPVGMSMLEAAHEN-DIE-LEGACEGSLACSTCHVIVMDM 131 (194)
Q Consensus 79 ~Vt~~~~~G~~~~v~v~~GetLLdaa~~~-gI~-l~~~CgG~G~CGTC~V~V~~g 131 (194)
+|+|. -+|+.++++++++++||++++++ |+. ....|+ .|.||.|.|.| +|
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~~lgl~g~k~gC~-~G~CGaCtV~v-dG 56 (166)
T 1n62_A 5 HIELT-INGHPVEALVEPRTLLIHFIREQQNLTGAHIGCD-TSHCGACTVDL-DG 56 (166)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCS-SSCSCTTEEEE-TT
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHHcCCCCccccCCC-CCCCCCCEEEE-CC
Confidence 34443 26888899999999999999985 653 577895 89999999999 54
No 33
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=97.86 E-value=3.4e-05 Score=61.81 Aligned_cols=44 Identities=20% Similarity=0.422 Sum_probs=37.6
Q ss_pred CCCEEEEEeCCCchHHHHHHHC-CC-CcccCCCCCccccccEEEEecc
Q 029354 86 DGEEKNIKVPVGMSMLEAAHEN-DI-ELEGACEGSLACSTCHVIVMDM 131 (194)
Q Consensus 86 ~G~~~~v~v~~GetLLdaa~~~-gI-~l~~~CgG~G~CGTC~V~V~~g 131 (194)
+|+.++++++++++||+++++. |+ .....|+ .|.||.|.|.| +|
T Consensus 11 NG~~~~~~v~~~~tLLd~LR~~lgltg~k~gC~-~G~CGaCtV~v-dG 56 (163)
T 1ffv_A 11 NGKAQEKAVEPRTLLIHFLREELNLTGAHIGCE-TSHCGACTVDI-DG 56 (163)
T ss_dssp TTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCS-SSCSCTTEEEE-TT
T ss_pred CCEEEEEecCCCCcHHHHHHhcCCCcccccCCC-CCCCCCCEEEE-CC
Confidence 6888899999999999999985 55 3578996 89999999999 54
No 34
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=97.86 E-value=2.8e-05 Score=62.02 Aligned_cols=63 Identities=27% Similarity=0.582 Sum_probs=50.5
Q ss_pred CCCEEEEEeCCCchHHHHHHHC-CC-CcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCCCeEEeee
Q 029354 86 DGEEKNIKVPVGMSMLEAAHEN-DI-ELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTETSRLGCQ 163 (194)
Q Consensus 86 ~G~~~~v~v~~GetLLdaa~~~-gI-~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~g~RLaCQ 163 (194)
+|+.+++++.+|++||+++++. |+ .....|+ .|.||.|.|.| +|. .++||+
T Consensus 10 NG~~~~v~~~~~~tLL~~Lr~~~gl~g~k~gC~-~G~CGaCtV~v-dG~-------------------------~v~sC~ 62 (161)
T 1rm6_C 10 NGRAREDLVPDNMLLLDYLRETVGLTGTKQGCD-GGECGACTVLV-DDR-------------------------PRLACS 62 (161)
T ss_dssp TTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSS-SSSSCTTEEEE-TTE-------------------------EEEGGG
T ss_pred CCEEEEEecCCcCcHHHHHHHcCCCcccccCCC-CCCCCCCEEEE-CCc-------------------------EEechH
Confidence 6888888999999999999997 66 4778996 89999999999 541 377898
Q ss_pred eEEecCCCceEEE
Q 029354 164 IVASPELDGIRLA 176 (194)
Q Consensus 164 ~~~~~dldgl~V~ 176 (194)
+.+.. ++|..|.
T Consensus 63 ~~~~~-~~G~~v~ 74 (161)
T 1rm6_C 63 TLAHQ-VAGKKVE 74 (161)
T ss_dssp SBGGG-GTTSEEE
T ss_pred HHHHH-hCCceEE
Confidence 87753 4566554
No 35
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=97.85 E-value=3e-05 Score=65.16 Aligned_cols=60 Identities=15% Similarity=0.305 Sum_probs=45.2
Q ss_pred EEEEEeCC-CchHHHHHHHCCC------CcccCCCCCccccccEEEEecccccCCCCCCChHHHhhccccCCCCCCeEEe
Q 029354 89 EKNIKVPV-GMSMLEAAHENDI------ELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEENDMLDLAFGLTETSRLG 161 (194)
Q Consensus 89 ~~~v~v~~-GetLLdaa~~~gI------~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~~L~~a~~l~~g~RLa 161 (194)
.++|++.+ |+||||++++.++ .....|+ .|.||+|.|.| +|. .+||
T Consensus 32 ~~~v~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~-~g~Cg~C~v~i-~G~-------------------------~~~a 84 (252)
T 2h88_B 32 TYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCR-EGICGSCAMNI-AGG-------------------------NTLA 84 (252)
T ss_dssp EEEEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSCS-SSSSCTTEEEE-TTE-------------------------EEEG
T ss_pred EEEEecCCCCChHHHHHHHhCcccCCCccccCCCC-CCCCCCCEEEE-CCc-------------------------EEcc
Confidence 36778888 9999999999762 2345895 89999999998 541 4789
Q ss_pred eeeEEecCCCc--eEEE
Q 029354 162 CQIVASPELDG--IRLA 176 (194)
Q Consensus 162 CQ~~~~~dldg--l~V~ 176 (194)
|++.+.. ++| ++|+
T Consensus 85 C~~~~~~-~~g~~~~ie 100 (252)
T 2h88_B 85 CTKKIDP-DLSKTTKIY 100 (252)
T ss_dssp GGSBCCC-CTTSCEEEE
T ss_pred ccCCHhH-cCCCceEEe
Confidence 9998765 233 6666
No 36
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=96.91 E-value=0.0023 Score=55.18 Aligned_cols=41 Identities=17% Similarity=0.378 Sum_probs=32.8
Q ss_pred EEEEEeCC-CchHHHHHHHCCCC------cccCCCCCccccccEEEEecc
Q 029354 89 EKNIKVPV-GMSMLEAAHENDIE------LEGACEGSLACSTCHVIVMDM 131 (194)
Q Consensus 89 ~~~v~v~~-GetLLdaa~~~gI~------l~~~CgG~G~CGTC~V~V~~g 131 (194)
.++|++.+ |++|||++++.+.. ....|+ .|.||.|.|.| +|
T Consensus 56 ~~~v~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~-~G~CGsC~V~I-nG 103 (282)
T 3vr8_B 56 KFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCR-EGICGSCAMNI-AG 103 (282)
T ss_pred EEEEEeCCCCCcHHHHHHhcCcccCCceeecCCCC-CCCCCCCEEEE-CC
Confidence 46788888 99999999986542 235796 69999999998 55
No 37
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Probab=96.63 E-value=0.0023 Score=51.24 Aligned_cols=49 Identities=14% Similarity=0.340 Sum_probs=38.9
Q ss_pred CcEEEEEEcCCCCEE-EEEeCCCchHHHHHHHC-CC-CcccCCCCCccccccEEEE
Q 029354 76 DMINVTFVDKDGEEK-NIKVPVGMSMLEAAHEN-DI-ELEGACEGSLACSTCHVIV 128 (194)
Q Consensus 76 ~~i~Vt~~~~~G~~~-~v~v~~GetLLdaa~~~-gI-~l~~~CgG~G~CGTC~V~V 128 (194)
+++++++ +|+.+ .+.+.++++||+.+++. |+ .....|+ .|.||.|-|.|
T Consensus 3 ~~i~~~v---NG~~~~~~~~~p~~~Ll~~LR~~lgltGtK~GC~-~G~CGACTVlv 54 (164)
T 3nvw_A 3 DELVFFV---NGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCG-EGGCGACTVML 54 (164)
T ss_dssp CCEEEEE---TTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCS-SSSSCTTEEEE
T ss_pred ceEEEEE---CCEEEEEecCCCCCCHHHHHHHHcCCCCcCCCcC-CCCCCCCEEEE
Confidence 4566654 57654 56789999999999986 66 4678995 89999999999
No 38
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=96.54 E-value=0.0039 Score=61.39 Aligned_cols=50 Identities=22% Similarity=0.431 Sum_probs=40.8
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHC-CC-CcccCCCCCccccccEEEEecc
Q 029354 79 NVTFVDKDGEEKNIKVPVGMSMLEAAHEN-DI-ELEGACEGSLACSTCHVIVMDM 131 (194)
Q Consensus 79 ~Vt~~~~~G~~~~v~v~~GetLLdaa~~~-gI-~l~~~CgG~G~CGTC~V~V~~g 131 (194)
+|+|. -+|+.+++++.++++||+++++. |+ .....|+ .|.||.|-|.| +|
T Consensus 3 ~~~~~-~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~-~g~CGaCtv~v-dg 54 (907)
T 1vlb_A 3 QKVIT-VNGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCE-QGQCGACSVIL-DG 54 (907)
T ss_dssp EEEEE-ETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSSS-SSSSCTTEEEE-TT
T ss_pred eEEEE-ECCEEEEEecCCCChHHHHHHHhcCCCeecCCCC-CCCcCccEEEE-CC
Confidence 34444 26888999999999999999985 55 4678996 79999999999 54
No 39
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=96.31 E-value=0.005 Score=56.36 Aligned_cols=43 Identities=21% Similarity=0.469 Sum_probs=37.0
Q ss_pred CCCEEEE-EeCCCchHHHHHHHCCCC-cccCCCCCccccccEEEEe
Q 029354 86 DGEEKNI-KVPVGMSMLEAAHENDIE-LEGACEGSLACSTCHVIVM 129 (194)
Q Consensus 86 ~G~~~~v-~v~~GetLLdaa~~~gI~-l~~~CgG~G~CGTC~V~V~ 129 (194)
+|+.+++ .+.++++||+++++.|+. ....|+ .|.||.|-|.|-
T Consensus 8 Ng~~~~~~~~~~~~~Ll~~Lr~~~l~g~k~gC~-~G~CGaCtV~v~ 52 (462)
T 2w3s_A 8 NGETRRVRIEDPTQSLLEWLRAEGLTGTKEGCN-EGDCGACTVMIR 52 (462)
T ss_dssp TTEEEEEECSCTTCBHHHHHHHTTCTTSCCSCS-SSSSCTTEEEEE
T ss_pred CCEEEEEecCCCCCcHHHHHHHcCCCccCCCCC-CCCcCCcEEEEE
Confidence 6888888 789999999999966764 678996 799999999994
No 40
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=96.24 E-value=0.0048 Score=60.73 Aligned_cols=50 Identities=18% Similarity=0.432 Sum_probs=40.3
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHC-CC-CcccCCCCCccccccEEEEecc
Q 029354 79 NVTFVDKDGEEKNIKVPVGMSMLEAAHEN-DI-ELEGACEGSLACSTCHVIVMDM 131 (194)
Q Consensus 79 ~Vt~~~~~G~~~~v~v~~GetLLdaa~~~-gI-~l~~~CgG~G~CGTC~V~V~~g 131 (194)
+|+|. -+|+.+++++.++++||+++++. |+ .....|+ .|.||.|-|.| +|
T Consensus 3 ~~~~~-~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~-~G~CGaCtv~v-dg 54 (907)
T 1dgj_A 3 TKTLI-VNGMARRLLVSPNDLLVDVLRSQLQLTSVKVGCG-KGQCGACTVIL-DG 54 (907)
T ss_dssp EEECE-ETTBCCEEEECTTCBHHHHHHHTTCCTTSCCSSS-SSSSCTTEEEE-TT
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHHhcCCCccCCCCC-CCCcCceEEEE-CC
Confidence 34444 26888899999999999999985 55 4677896 79999999999 54
No 41
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=95.51 E-value=0.015 Score=52.51 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=35.2
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCC---C--CCccccccEEEE
Q 029354 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGAC---E--GSLACSTCHVIV 128 (194)
Q Consensus 75 ~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~C---g--G~G~CGTC~V~V 128 (194)
..+++++| || +.+++.+|+||+++++++|+++...| . |.-.|+.|.|.|
T Consensus 13 ~~~v~~~~---dg--~~~~~~~g~ti~~a~~~~g~~~~~~~~~~~p~g~~~~~~c~v~v 66 (493)
T 1y56_A 13 GKKVTIYF---EG--KELEAYEGEKLPVALLANEIYWLTTSNEGRKRGAFTFGPVPMTV 66 (493)
T ss_dssp SCEEEEEE---TT--EEEEEETTCBHHHHHHHTTCCCCEECTTSCEECSSSSSCCEEBS
T ss_pred CCeEEEEE---CC--EEEEecCCCHHHHHHHHCCCceecCCCCCCCCccccceEEEEEE
Confidence 34566665 67 67999999999999999999752211 1 223378899987
No 42
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=92.17 E-value=0.28 Score=48.23 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=38.8
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccC-----------CCCCccccccEEEEe
Q 029354 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGA-----------CEGSLACSTCHVIVM 129 (194)
Q Consensus 75 ~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~-----------CgG~G~CGTC~V~V~ 129 (194)
+.+++++| || +++.+.+|+||++|++.+|+.+... |. .+.|..|.|.|-
T Consensus 20 ~~~~~~~~---dG--~~~~~~~g~tv~~aL~~~Gv~~~~~s~~~~~prg~~~~-~~~c~~~~v~v~ 79 (965)
T 2gag_A 20 EEALSLTV---DG--AKLSAFRGDTVASALLANGVRRAGNSLYLDRPRGIFAA-GVEEPNALVTVS 79 (965)
T ss_dssp EEEEEEEE---TT--EEEEEEETCBHHHHHHHTTCCBCSCCTTTCCCCBCCCS-STTCCSCEEEEC
T ss_pred CCeEEEEE---CC--EEEEecCCCHHHHHHHHcCCeEeecCCCCCCCcccccC-CccCCceEEEEc
Confidence 44666655 68 7899999999999999999876543 43 478999999993
No 43
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=91.48 E-value=0.23 Score=50.81 Aligned_cols=48 Identities=13% Similarity=0.297 Sum_probs=37.8
Q ss_pred cEEEEEEcCCCCEEEE-EeCCCchHHHHHHHC-CCC-cccCCCCCccccccEEEE
Q 029354 77 MINVTFVDKDGEEKNI-KVPVGMSMLEAAHEN-DIE-LEGACEGSLACSTCHVIV 128 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v-~v~~GetLLdaa~~~-gI~-l~~~CgG~G~CGTC~V~V 128 (194)
++++++ +|+.+++ .+.+.++||+.++++ |+- ....|+ .|.||.|-|.|
T Consensus 5 ~i~~~v---Ng~~~~~~~~~p~~~ll~~LR~~~~ltgtk~gC~-~g~CGaCtV~~ 55 (1332)
T 3unc_A 5 ELVFFV---NGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCG-EGGCGACTVML 55 (1332)
T ss_dssp CEEEEE---TTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCS-SSSSCTTEEEE
T ss_pred cEEEEE---CCEEEEeecCCCCCCHHHHHhhhcCCCCcCCCcC-CCCCCCcEEEE
Confidence 455544 5866665 689999999999985 663 667895 89999999999
No 44
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=85.15 E-value=1.4 Score=32.34 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=28.2
Q ss_pred CCCcEEEEEEcCCCCE--EEEEeCCCchHHHHHHHCC
Q 029354 74 QKDMINVTFVDKDGEE--KNIKVPVGMSMLEAAHEND 108 (194)
Q Consensus 74 ~~~~i~Vt~~~~~G~~--~~v~v~~GetLLdaa~~~g 108 (194)
-.+.++|++++.+|+. .+|. +.|++|+|++.++.
T Consensus 5 g~k~i~i~v~~~~~~~~~~~v~-t~g~tL~dvLk~~~ 40 (101)
T 3u7z_A 5 GEKHITVTVIHGDQTENVFEFD-TDAKYLGEVLESEN 40 (101)
T ss_dssp CCEEEEEEEECTTSCEEEEEEE-ECCSBHHHHHHHTT
T ss_pred ceeEEEEEEEcCCCceeEEEEc-CCccHHHHHHHHcC
Confidence 4568899999988875 4567 88999999999998
No 45
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=80.31 E-value=3.7 Score=29.79 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=31.0
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCchHHHH----HHHCCCCcc
Q 029354 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEA----AHENDIELE 112 (194)
Q Consensus 73 ~~~~~i~Vt~~~~~G~~~~v~v~~GetLLda----a~~~gI~l~ 112 (194)
..+.|++|++.+..|+..++++.+.+|+.++ +...|++.+
T Consensus 24 ~~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~ 67 (100)
T 1uh6_A 24 GAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWN 67 (100)
T ss_dssp SCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGG
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHH
Confidence 3466899999988898899999999999875 344566543
No 46
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=78.62 E-value=2.9 Score=42.80 Aligned_cols=43 Identities=14% Similarity=0.335 Sum_probs=33.2
Q ss_pred CCCEEEE-EeCCCchHHHHHHHC-CCC-cccCCCCCccccccEEEEe
Q 029354 86 DGEEKNI-KVPVGMSMLEAAHEN-DIE-LEGACEGSLACSTCHVIVM 129 (194)
Q Consensus 86 ~G~~~~v-~v~~GetLLdaa~~~-gI~-l~~~CgG~G~CGTC~V~V~ 129 (194)
+|+..++ .+.+..|||+-++++ ++- -...|+ .|-||.|-|.|-
T Consensus 15 NG~~v~~~~~~p~~tLl~~LR~~~~ltGTK~gC~-EG~CGACtV~v~ 60 (1335)
T 3zyv_A 15 NGKKVTERNADPEVNLLFYLRKVIRLTGTKYGCG-GGDCGACTVMIS 60 (1335)
T ss_dssp TTEEEEESSCCTTCBHHHHHHHTTCCTTSCCSCS-SSSSCTTEEEEE
T ss_pred CCEEEEeCCCCcCccHHHHHhccCCCcccccccC-CCCCcceEEEEe
Confidence 5755554 366899999999985 553 456896 899999999994
No 47
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=78.22 E-value=4 Score=29.64 Aligned_cols=47 Identities=13% Similarity=0.321 Sum_probs=30.9
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEe
Q 029354 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVM 129 (194)
Q Consensus 75 ~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~ 129 (194)
...+.+.+ ++++...|++.+|+||-||+..+ +..- +-.+-.|.|...
T Consensus 17 ~~~irvhL--PNqQrT~V~VrpG~tlrdAL~Ka-Lk~R-----~L~pe~C~Vy~~ 63 (95)
T 2l05_A 17 KPIVRVFL--PNKQRTVVPARCGVTVRDSLKKA-LMMR-----GLIPECCAVYRI 63 (95)
T ss_dssp SCEEEEEE--TTTEEEEEECCTTCBHHHHHHHH-HHHH-----TCCGGGEEEEEE
T ss_pred ccEEEEEC--CCCCeEEEEecCCcCHHHHHHHH-HHHc-----CCCHHHcEEEEc
Confidence 34555544 78888899999999999987554 1111 114556778764
No 48
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=77.98 E-value=2.8 Score=30.20 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=25.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 73 ~~~~~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
....|+.|++.+..|+..++++.+.+|+.+.
T Consensus 17 ~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~L 47 (93)
T 3plu_A 17 RGSHMIEVVVNDRLGKKVRVKCLGEDSVGDF 47 (93)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSBHHHH
T ss_pred CCCceEEEEEECCCCCEEEEEECCcCHHHHH
Confidence 4467999999989999999999999999975
No 49
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=75.55 E-value=3.5 Score=29.46 Aligned_cols=50 Identities=16% Similarity=0.330 Sum_probs=33.1
Q ss_pred CCCCCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEe
Q 029354 72 NKQKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVM 129 (194)
Q Consensus 72 ~~~~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~ 129 (194)
++....+.+.+ |+++...|++.+|+||-||+..+ +..- .-.+-.|.|...
T Consensus 4 ~k~~~~irvhL--Pn~QrT~V~VrpG~tlrdaL~Ka-Lk~R-----~L~pe~C~Vy~~ 53 (86)
T 1wxm_A 4 GSSGGTVKVYL--PNKQRTVVTVRDGMSVYDSLDKA-LKVR-----GLNQDCCVVYRL 53 (86)
T ss_dssp CCCSSEEEEEC--SSSCEEEEECCSSCBSHHHHHHH-HHTT-----TCCSSSEEEEEE
T ss_pred ccccceEEEEC--CCCCeEEEEecCCcCHHHHHHHH-HHHc-----CCCHHHeEEEEc
Confidence 34455666655 78888899999999999886544 1110 123556788764
No 50
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=70.70 E-value=4.5 Score=29.07 Aligned_cols=32 Identities=19% Similarity=0.403 Sum_probs=26.1
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHH----HCCCC
Q 029354 79 NVTFVDKDGEEKNIKVPVGMSMLEAAH----ENDIE 110 (194)
Q Consensus 79 ~Vt~~~~~G~~~~v~v~~GetLLdaa~----~~gI~ 110 (194)
.|+++.++|.+.+|++.++.+|.|++. ..|++
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~ 46 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN 46 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCC
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 677888899999999999999988754 44664
No 51
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=68.03 E-value=6.2 Score=28.69 Aligned_cols=48 Identities=15% Similarity=0.333 Sum_probs=32.0
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEe
Q 029354 74 QKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVM 129 (194)
Q Consensus 74 ~~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~ 129 (194)
....+.|.+ |+++...|++.+|.||-|++..+ +..- .-.+-.|.|...
T Consensus 12 ~~~~irvhL--PNqQrT~V~VrpG~tlrdaL~Ka-Lk~R-----~L~pe~C~Vy~~ 59 (96)
T 3ny5_A 12 QKPIVRVFL--PNKQRTVVPARCGVTVRDSLKKA-LMMR-----GLIPECCAVYRI 59 (96)
T ss_dssp SSCEEEEEE--TTTEEEEEECCTTCBHHHHHHHH-HHTT-----TCCGGGEEEEEC
T ss_pred hhCEEEEEC--CCCceEEEEecCCcCHHHHHHHH-HHHc-----CCChHHeEEEEc
Confidence 345556654 78888889999999999987554 1110 125567888864
No 52
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=65.54 E-value=12 Score=27.15 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=24.8
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 74 QKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 74 ~~~~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
.+...+|++...+|+..+|++++.+|+.|+
T Consensus 4 ~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dL 33 (105)
T 1v2y_A 4 GSSGMTVRVCKMDGEVMPVVVVQNATVLDL 33 (105)
T ss_dssp CCCSEEEEEECSSSCEEEEEECTTCBHHHH
T ss_pred CCCcEEEEEEecCCCEEEEEECCCChHHHH
Confidence 345578888888899999999999998765
No 53
>3kdv_A DDRB, DNA damage response B protein; anti-parallel beta-barrel, pentamer, DNA binding protein; HET: DNA; 2.80A {Deinococcus geothermalis} PDB: 4exw_A
Probab=65.28 E-value=7.3 Score=30.96 Aligned_cols=37 Identities=14% Similarity=0.295 Sum_probs=32.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCC
Q 029354 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDI 109 (194)
Q Consensus 73 ~~~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI 109 (194)
.+-.|+.|.|+.+-|...+++++.++.||++++..|-
T Consensus 3 ~~~tml~i~f~t~LG~~V~vdve~~~~~l~v~R~yG~ 39 (184)
T 3kdv_A 3 DPFTMLHIEFITDLGAKVTVDVESADKLLDVQRQYGR 39 (184)
T ss_dssp CCSCCEEEEEECTTCCEEEEEESSGGGHHHHHHHHHT
T ss_pred CccceEEEEEecCCCceEEEecCCHHHHHHHHHHhhh
Confidence 4567999999998999999999999999999988764
No 54
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=65.10 E-value=14 Score=25.17 Aligned_cols=41 Identities=7% Similarity=0.087 Sum_probs=30.2
Q ss_pred CCCCCCcEEEEEEcCCCCEEEEEeCCCchHHHH----HHHCCCCc
Q 029354 71 SNKQKDMINVTFVDKDGEEKNIKVPVGMSMLEA----AHENDIEL 111 (194)
Q Consensus 71 ~~~~~~~i~Vt~~~~~G~~~~v~v~~GetLLda----a~~~gI~l 111 (194)
++.+...++|++...+|+...+++...+|+.+. ....|++.
T Consensus 11 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 55 (91)
T 3v6c_B 11 GLVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPP 55 (91)
T ss_dssp CCCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CCCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCCh
Confidence 344456678988888898899999999999875 23345553
No 55
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=63.80 E-value=6.7 Score=29.03 Aligned_cols=48 Identities=21% Similarity=0.408 Sum_probs=30.7
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEe
Q 029354 74 QKDMINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVM 129 (194)
Q Consensus 74 ~~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~ 129 (194)
....+.+.+ ++++...|+|.+|+||-|++..+ +.+-. -.+-.|.|...
T Consensus 17 ~~~~ir~hL--PNqQrT~V~VrpG~tlrdaL~Ka-Lk~R~-----L~pe~C~Vy~~ 64 (107)
T 1rrb_A 17 TSNTIRVFL--PNKQRTVVNVRNGMSLHDCLMKA-LKVRG-----LQPECCAVFRL 64 (107)
T ss_dssp --CEEEEEC--TTTCCEEEECCTTCBHHHHHHHH-HHHHT-----CCTTTEEEEEC
T ss_pred ccceEEEEC--CCCCeEEEEecCCcCHHHHHHHH-HHHcC-----CCHHHceeEEc
Confidence 334555644 77888899999999999987554 11111 13556788864
No 56
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=63.73 E-value=12 Score=25.44 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=27.0
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCC-CchHHHHHHHCCCCcccCC
Q 029354 73 KQKDMINVTFVDKDGEEKNIKVPV-GMSMLEAAHENDIELEGAC 115 (194)
Q Consensus 73 ~~~~~i~Vt~~~~~G~~~~v~v~~-GetLLdaa~~~gI~l~~~C 115 (194)
.+..+++|++ ++|+ ..+++. |.|++|++...+-.+...|
T Consensus 7 ~~~~~i~I~l--pdG~--~~~~~~~~~T~~dia~~i~~~l~~~~ 46 (88)
T 1wwt_A 7 GDSKPIKVTL--PDGK--QVDAESWKTTPYQIACGISQGLADNT 46 (88)
T ss_dssp CSCCEEEEEC--TTSC--EEEEETTTCCHHHHHHHSSTTTGGGC
T ss_pred CCCCCEEEEE--CCCC--EEEcccCCCCHHHHHHHhhhccccce
Confidence 4456777776 5785 455666 8999999988766655444
No 57
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=63.55 E-value=13 Score=27.79 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=24.9
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 75 ~~~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
..++.|+|...+|+..++++.+.+|+.++
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~l 43 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDI 43 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHH
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHH
Confidence 44689999888899999999999999776
No 58
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.05 E-value=16 Score=23.70 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=23.3
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 75 ~~~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
..+++|++...+|+..++++...+|+.+.
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~L 33 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTL 33 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHH
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHH
Confidence 35667887777888889999999998775
No 59
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=60.90 E-value=9.5 Score=26.55 Aligned_cols=32 Identities=9% Similarity=0.054 Sum_probs=23.3
Q ss_pred CCCCCcEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 72 NKQKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 72 ~~~~~~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
...+..++|++...+|+...+++.+.+|+.+.
T Consensus 17 ~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~L 48 (98)
T 4hcn_B 17 YFQGRPMQIFVKTLTGKTITLEVESSDTIDNV 48 (98)
T ss_dssp -----CCEEEEEETTCCEEEEECCTTCBHHHH
T ss_pred CCCCCeEEEEEEeCCCCEEEEEECCCCcHHHH
Confidence 34455678888877898899999999999875
No 60
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=60.30 E-value=22 Score=23.47 Aligned_cols=30 Identities=10% Similarity=0.077 Sum_probs=24.8
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 74 QKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 74 ~~~~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
.+..++|++...+|+...+++.+.+|+.+.
T Consensus 9 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~l 38 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIEIDIEPTDKVERI 38 (88)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHH
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCCHHHH
Confidence 445678888877898899999999999875
No 61
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=59.97 E-value=12 Score=26.02 Aligned_cols=45 Identities=20% Similarity=0.372 Sum_probs=29.7
Q ss_pred cEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEe
Q 029354 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVM 129 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~ 129 (194)
.+.+.+ |+++...|++.+|+||-||+..+ +..- .-.+-.|.|...
T Consensus 3 ~irvhL--Pn~QrT~V~VrpG~tlrdaL~Ka-Lk~R-----~L~pe~C~V~~~ 47 (77)
T 1c1y_B 3 TIRVFL--PNKQRTVVNVRNGMSLHDCLMKA-LKVR-----GLQPECCAVFRL 47 (77)
T ss_dssp EEEEEE--TTTEEEEEECCTTCBHHHHHHHH-HHTT-----TCCGGGEEEEEE
T ss_pred eEEEEC--CCCceEEEEecCCcCHHHHHHHH-HHHc-----CCCHHHeEEEEe
Confidence 345544 77878889999999999987554 1110 124556777754
No 62
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=59.32 E-value=16 Score=24.34 Aligned_cols=30 Identities=17% Similarity=0.117 Sum_probs=24.2
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 74 QKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 74 ~~~~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
++.+++|++...+|+..++++.+.+|+.+.
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~l 33 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAINPNSFILGL 33 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEECSSSBHHHH
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCChHHHH
Confidence 345678888877788888999999998875
No 63
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=58.21 E-value=28 Score=25.61 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=26.1
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 73 ~~~~~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
-+.+.+.|+|....|+..++++.+.+|+.++
T Consensus 12 ~~~~~m~I~vKtl~G~t~~lev~~s~TV~~l 42 (116)
T 1wgh_A 12 VPADMINLRLILVSGKTKEFLFSPNDSASDI 42 (116)
T ss_dssp CCSSSEEEEEECSSSCEEEEEECTTCBHHHH
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCcCHHHHH
Confidence 4556788999887899999999999998775
No 64
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=58.04 E-value=14 Score=25.33 Aligned_cols=32 Identities=6% Similarity=0.041 Sum_probs=23.8
Q ss_pred CCCCCcEEEEEEcCCCC--EEEEEeCCCchHHHH
Q 029354 72 NKQKDMINVTFVDKDGE--EKNIKVPVGMSMLEA 103 (194)
Q Consensus 72 ~~~~~~i~Vt~~~~~G~--~~~v~v~~GetLLda 103 (194)
++++.+++|++...+|. ..+|++.+.+|+.+.
T Consensus 2 ~~~~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~l 35 (93)
T 1wgd_A 2 SSGSSGVTLLVKSPNQRHRDLELSGDRGWSVGHL 35 (93)
T ss_dssp CCCSCCCEEEEECSSSSCCCEEEECCTTSCHHHH
T ss_pred CCCCcEEEEEEEeCCCCeEEEEEecCCCCcHHHH
Confidence 34566778888877776 466777799998875
No 65
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=57.58 E-value=13 Score=24.40 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=24.2
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 75 ~~~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
|+.++|++.+.+|+...+++.+.+|+.+.
T Consensus 1 m~~m~i~vk~~~g~~~~~~v~~~~tv~~l 29 (79)
T 2uyz_B 1 MEYIKLKVIGQDSSEIHFKVKMTTHLKKL 29 (79)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHH
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHH
Confidence 45678888888898899999999988775
No 66
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=55.45 E-value=12 Score=28.54 Aligned_cols=41 Identities=7% Similarity=0.079 Sum_probs=27.8
Q ss_pred CCCCCCcEEEEEEcCCCCEEEEEeCCCchHHHH----HHHCCCCc
Q 029354 71 SNKQKDMINVTFVDKDGEEKNIKVPVGMSMLEA----AHENDIEL 111 (194)
Q Consensus 71 ~~~~~~~i~Vt~~~~~G~~~~v~v~~GetLLda----a~~~gI~l 111 (194)
++.++.+++|++...+|+...+++.+.+|+.+. ....|++.
T Consensus 14 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~ 58 (172)
T 3u30_A 14 LVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 58 (172)
T ss_dssp -----CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCh
Confidence 445566778888877898889999999999885 33445543
No 67
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=51.40 E-value=24 Score=24.09 Aligned_cols=31 Identities=13% Similarity=-0.065 Sum_probs=24.7
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCchHHHHHH
Q 029354 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEAAH 105 (194)
Q Consensus 75 ~~~i~Vt~~~~~G~~~~v~v~~GetLLdaa~ 105 (194)
+.+++|++...+|....+++...+|+.++=.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~ 35 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKS 35 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHH
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHH
Confidence 4567888876778778899999999988643
No 68
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=48.86 E-value=23 Score=24.85 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=26.6
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCchHHH---H-HHHCCCC
Q 029354 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLE---A-AHENDIE 110 (194)
Q Consensus 73 ~~~~~i~Vt~~~~~G~~~~v~v~~GetLLd---a-a~~~gI~ 110 (194)
...+.++|++.+.+|++..++++..++|-. + +.+.|++
T Consensus 3 ~~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~ 44 (94)
T 2io1_B 3 HMNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS 44 (94)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCC
Confidence 344678999998899989999999987544 4 3444654
No 69
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=47.99 E-value=27 Score=23.36 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=23.5
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 76 DMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 76 ~~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
.+++|++...+|+...+++...+|+.+.
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~l 31 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEF 31 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHH
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHH
Confidence 4667888877898899999999999876
No 70
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=47.61 E-value=50 Score=22.08 Aligned_cols=39 Identities=5% Similarity=0.027 Sum_probs=27.9
Q ss_pred CCCCCcEEEEEEcCCCC-EEEEEeCCCchHHHH----HHHCCCC
Q 029354 72 NKQKDMINVTFVDKDGE-EKNIKVPVGMSMLEA----AHENDIE 110 (194)
Q Consensus 72 ~~~~~~i~Vt~~~~~G~-~~~v~v~~GetLLda----a~~~gI~ 110 (194)
|...+.++|++.+.+|. ...+.++..++|-.+ +.+.|++
T Consensus 2 p~~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~ 45 (79)
T 3a4r_A 2 PLGSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLS 45 (79)
T ss_dssp TTCCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCT
T ss_pred CCCCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCC
Confidence 34456789999988995 789999999875444 3444554
No 71
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=45.77 E-value=24 Score=24.47 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=24.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 73 ~~~~~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
.+..+++|++...+|+...+++.+.+|+.++
T Consensus 17 ~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~l 47 (97)
T 1wyw_B 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKL 47 (97)
T ss_dssp --CCEEEEEEECTTCCEEEEEEETTSCTHHH
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHH
Confidence 4456788999888898899999999988765
No 72
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=45.04 E-value=47 Score=22.01 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCC-CEEEE-EeCCCchHHHH
Q 029354 75 KDMINVTFVDKDG-EEKNI-KVPVGMSMLEA 103 (194)
Q Consensus 75 ~~~i~Vt~~~~~G-~~~~v-~v~~GetLLda 103 (194)
..+++|++...+| +..++ ++.+.+|+.+.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~l 35 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEEL 35 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHH
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHH
Confidence 3567888877778 68899 59999998875
No 73
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=43.98 E-value=36 Score=22.10 Aligned_cols=27 Identities=7% Similarity=0.124 Sum_probs=22.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 77 MINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
+++|++...+|+...+++.+.+|+.+.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~l 29 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENV 29 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHH
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHH
Confidence 467888878888899999999999875
No 74
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=43.54 E-value=53 Score=23.69 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=25.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCchHHHHHHHCCC
Q 029354 77 MINVTFVDKDGEEKNIKVPVGMSMLEAAHENDI 109 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI 109 (194)
+.-|+|...||..++|.+.+++|..|+++.--.
T Consensus 9 k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~ 41 (100)
T 1wgr_A 9 PHVVKVYSEDGACRSVEVAAGATARHVCEMLVQ 41 (100)
T ss_dssp CEEEEEEETTSCEEEEEECTTCCHHHHHHHHHC
T ss_pred CEEEEEEecCCCEEEEEECCCCcHHHHHHHHHH
Confidence 344555567899999999999999999866433
No 75
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=42.56 E-value=12 Score=30.23 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=19.6
Q ss_pred hHHHHHHHCCCCcc------cCCCCCccccccEEEE
Q 029354 99 SMLEAAHENDIELE------GACEGSLACSTCHVIV 128 (194)
Q Consensus 99 tLLdaa~~~gI~l~------~~CgG~G~CGTC~V~V 128 (194)
.+.+ +.+.|++.. -.|| .|+|+.|.|.+
T Consensus 205 ~v~~-l~~~gv~~~vs~e~~m~CG-~G~C~~C~~~~ 238 (262)
T 1ep3_B 205 AVAK-KYDQLERLYISMESRMACG-IGACYACVEHD 238 (262)
T ss_dssp HHHH-HTTTCSSEEEECCCCCSSS-SSSSCTTEEEE
T ss_pred HHHH-HHhCCCCEEEEecccccCc-ccccccCCccc
Confidence 3444 556677532 4795 89999999986
No 76
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=42.39 E-value=47 Score=22.25 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=25.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcc
Q 029354 78 INVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELE 112 (194)
Q Consensus 78 i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~ 112 (194)
++|++. .....++++++|.|+.|.+.+.|++..
T Consensus 3 v~Vkl~--g~~~~~~ev~~g~Tv~dLL~~Lgl~~~ 35 (74)
T 2l32_A 3 VTVEVV--GEETSEVAVDDDGTYADLVRAVDLSPH 35 (74)
T ss_dssp EEEECS--SSSEEEEECSTTCSHHHHHHTTCCCSS
T ss_pred EEEEEe--CccceeEEcCCCCcHHHHHHHcCCCcc
Confidence 455553 224567899999999999999999764
No 77
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=42.17 E-value=62 Score=21.84 Aligned_cols=29 Identities=7% Similarity=0.060 Sum_probs=23.7
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 74 QKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 74 ~~~~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
+..+++|++... |+..++++...+|+.+.
T Consensus 14 ~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~L 42 (96)
T 1wx8_A 14 SSRIIRVSVKTP-QDCHEFFLAENSNVRRF 42 (96)
T ss_dssp CSCEEEEEEECS-SSEEEEEEETTCCHHHH
T ss_pred CCCcEEEEEEEC-CeEEEEEECCCCCHHHH
Confidence 456788888865 88889999999998775
No 78
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=40.99 E-value=46 Score=21.52 Aligned_cols=27 Identities=7% Similarity=0.203 Sum_probs=22.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 77 MINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
..+|++...+|+...+++.+.+|+.+.
T Consensus 4 ~m~i~Vk~~~g~~~~~~v~~~~tV~~l 30 (79)
T 3phx_B 4 PLSILVRNNKGRSSTYEVRLTQTVAHL 30 (79)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHH
T ss_pred CEEEEEEeCCCCEEEEEECCcChHHHH
Confidence 457888878898899999999999875
No 79
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=40.89 E-value=38 Score=22.51 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=23.9
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 75 ~~~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
..+++|++...+|+...+++.+.+|+.+.
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~l 43 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEF 43 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHH
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHH
Confidence 34567888877898889999999999875
No 80
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=40.22 E-value=26 Score=22.55 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcc
Q 029354 78 INVTFVDKDGEEKNIKVPVGMSMLEAAHENDIELE 112 (194)
Q Consensus 78 i~Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~ 112 (194)
++|++ ++|+ .++++.|.|++|.+.+.+..+.
T Consensus 3 i~i~~--p~g~--~~~~~~g~T~~dla~~i~~~l~ 33 (73)
T 2kmm_A 3 VMVFT--PKGE--IKRLPQGATALDFAYSLHSDLG 33 (73)
T ss_dssp EEEEC--TTCC--EEEECTTCBHHHHHHHHCSHHH
T ss_pred EEEEc--CCCC--EEEcCCCCcHHHHHHHHhhccc
Confidence 44544 5774 5778899999999987655443
No 81
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=39.18 E-value=38 Score=23.51 Aligned_cols=38 Identities=8% Similarity=-0.054 Sum_probs=27.3
Q ss_pred CCCCcEEEEEEcCCCCEE-EEEeCCCchHHHH----HHHCCCCc
Q 029354 73 KQKDMINVTFVDKDGEEK-NIKVPVGMSMLEA----AHENDIEL 111 (194)
Q Consensus 73 ~~~~~i~Vt~~~~~G~~~-~v~v~~GetLLda----a~~~gI~l 111 (194)
+.+.+++|++.. .|+.+ .+++...+|+.+. ....||+.
T Consensus 3 ~~~~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~ 45 (96)
T 1wgg_A 3 SGSSGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQP 45 (96)
T ss_dssp SCCCEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCT
T ss_pred CCCcEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCH
Confidence 445688888874 57778 5999999999875 33456653
No 82
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=38.89 E-value=61 Score=22.23 Aligned_cols=32 Identities=16% Similarity=0.373 Sum_probs=24.3
Q ss_pred CCCCCCcEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 71 SNKQKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 71 ~~~~~~~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
+..+..+++|++. ..|+.+.+++.+.+|+.+.
T Consensus 11 ~~~~~~~~~i~Vk-~~g~~~~i~v~~~~TV~~L 42 (95)
T 1v86_A 11 GGVGKELVDLKII-WNKTKHDVKVPLDSTGSEL 42 (95)
T ss_dssp CCCCCCCEEEEEE-ETTEEEEEEECTTSBHHHH
T ss_pred CCCCCceEEEEEE-ECCEEEEEEECCCCcHHHH
Confidence 3445567788876 3677789999999999876
No 83
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=38.63 E-value=49 Score=23.04 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=26.2
Q ss_pred CCCCCCCcEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 70 GSNKQKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 70 ~~~~~~~~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
.++....+++|++...+|. .++++.+.+|+.+.
T Consensus 15 ~~~~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~L 47 (100)
T 1yqb_A 15 VPRGSPHLIKVTVKTPKDK-EDFSVTDTCTIQQL 47 (100)
T ss_dssp CCSCCTTEEEEEEECSSCE-EEEEEETTCBHHHH
T ss_pred CCCCCCCeEEEEEEcCCCc-EEEEECCCCcHHHH
Confidence 4566778889999877774 78999999998775
No 84
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=38.40 E-value=77 Score=21.70 Aligned_cols=30 Identities=13% Similarity=0.009 Sum_probs=22.9
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 73 ~~~~~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
.....++|++....| ..++++.+.+|+.+.
T Consensus 11 ~~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~L 40 (94)
T 2kan_A 11 AAVRKIHVTVKFPSK-QFTVEVDRTETVSSL 40 (94)
T ss_dssp SSSCCEEEEEECSSC-EEEEEECTTCBHHHH
T ss_pred cCCCCEEEEEEcCCc-EEEEEECCCCcHHHH
Confidence 344567788876666 788999999998875
No 85
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=37.00 E-value=46 Score=22.33 Aligned_cols=28 Identities=7% Similarity=0.228 Sum_probs=22.9
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 76 DMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 76 ~~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
.+++|++...+|+...+++.+.+|+.+.
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~L 30 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHL 30 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHH
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHH
Confidence 3567888777788889999999998875
No 86
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=37.00 E-value=34 Score=23.35 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=24.8
Q ss_pred EEEEcCCCCEEEEEeCCCchHHHHHHHCCCCcccCC
Q 029354 80 VTFVDKDGEEKNIKVPVGMSMLEAAHENDIELEGAC 115 (194)
Q Consensus 80 Vt~~~~~G~~~~v~v~~GetLLdaa~~~gI~l~~~C 115 (194)
|.+..++| ..+.++.|.|.+|+|.+-+-++...|
T Consensus 8 i~v~tP~G--~~~~lp~GaT~~D~A~~Ih~~lg~~~ 41 (78)
T 3hvz_A 8 VFVFTPKG--DVISLPIGSTVIDFAYAIHSAVGNRM 41 (78)
T ss_dssp EEEECTTS--CEEEEETTCBHHHHHHHHCHHHHHTE
T ss_pred EEEECCCC--CEEEecCCCCHHHHHHHhhhhhhcce
Confidence 44455888 46789999999999987655554444
No 87
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=36.99 E-value=74 Score=22.12 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=26.0
Q ss_pred CCCCCCCCcEEEEEEcCCCC--EEEEEeCCCchHHHH
Q 029354 69 HGSNKQKDMINVTFVDKDGE--EKNIKVPVGMSMLEA 103 (194)
Q Consensus 69 ~~~~~~~~~i~Vt~~~~~G~--~~~v~v~~GetLLda 103 (194)
+.+-.++..++|++....++ ..++++++.+|+.+.
T Consensus 7 ~~~~~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~L 43 (95)
T 2kjr_A 7 HHSHGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQL 43 (95)
T ss_dssp CCCCCCCCEEEEEEEESSCSCEEEEEEEETTCBHHHH
T ss_pred ccccCCCCeEEEEEEECCCCceEEEEEeCccCHHHHH
Confidence 34456678888888764443 678999999999775
No 88
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=36.47 E-value=52 Score=21.44 Aligned_cols=27 Identities=7% Similarity=0.097 Sum_probs=22.3
Q ss_pred cEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 77 MINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
+++|++...+|+..++++.+.+|+.+.
T Consensus 5 ~m~i~vk~~~g~~~~~~v~~~~TV~~l 31 (85)
T 2wyq_A 5 AVTITLKTLQQQTFKIRMEPDETVKVL 31 (85)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHH
T ss_pred eEEEEEEECCCCEEEEEECCCCCHHHH
Confidence 457877777788889999999998875
No 89
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=36.27 E-value=44 Score=23.39 Aligned_cols=30 Identities=7% Similarity=0.048 Sum_probs=23.5
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 74 QKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 74 ~~~~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
+..+++|++...+|+...+++...+|+.+.
T Consensus 20 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~L 49 (106)
T 1ttn_A 20 SGYECQLRLRLSTGKDLKLVVRSTDTVFHM 49 (106)
T ss_dssp -CCSEEEEEEETTTEEEEEEECTTSHHHHH
T ss_pred CCCeEEEEEEcCCCCEEEEEeCCCCcHHHH
Confidence 445678888777788888999999998775
No 90
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=35.86 E-value=87 Score=22.60 Aligned_cols=38 Identities=16% Similarity=0.354 Sum_probs=28.0
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCchHHHH----HHHCCCC
Q 029354 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEA----AHENDIE 110 (194)
Q Consensus 73 ~~~~~i~Vt~~~~~G~~~~v~v~~GetLLda----a~~~gI~ 110 (194)
.+...++|++.+.+|+...+.++..++|-.+ +.+.|++
T Consensus 22 ~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~ 63 (110)
T 2k8h_A 22 EETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGIS 63 (110)
T ss_dssp CCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCC
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC
Confidence 3456789999988998899999999875444 3444554
No 91
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=35.43 E-value=22 Score=20.76 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=18.1
Q ss_pred EEEeCCCchHHHHHHHCCCCc
Q 029354 91 NIKVPVGMSMLEAAHENDIEL 111 (194)
Q Consensus 91 ~v~v~~GetLLdaa~~~gI~l 111 (194)
+..+..|+||-.++.+.|+.+
T Consensus 4 ~y~V~~GDtl~~Ia~~~~~~~ 24 (48)
T 1e0g_A 4 TYRVRKGDSLSSIAKRHGVNI 24 (48)
T ss_dssp EEEECTTCCHHHHHHHHTCCH
T ss_pred EEEEcCCCcHHHHHHHHCcCH
Confidence 567889999999999998864
No 92
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=35.15 E-value=21 Score=25.55 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=24.3
Q ss_pred CcEEEEEE--cCCC-CEEEEEeCCCchHHHHHHHCCCC
Q 029354 76 DMINVTFV--DKDG-EEKNIKVPVGMSMLEAAHENDIE 110 (194)
Q Consensus 76 ~~i~Vt~~--~~~G-~~~~v~v~~GetLLdaa~~~gI~ 110 (194)
+|+.|.+. .++. ....+++++|.|+.|++...|+.
T Consensus 11 ~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~ 48 (97)
T 2hj1_A 11 NQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGIL 48 (97)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHH
T ss_pred ceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCC
Confidence 45555544 3332 12467889999999999999985
No 93
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=35.11 E-value=97 Score=22.02 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=28.2
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCchHHHH----HHHCCCCc
Q 029354 74 QKDMINVTFVDKDGEEKNIKVPVGMSMLEA----AHENDIEL 111 (194)
Q Consensus 74 ~~~~i~Vt~~~~~G~~~~v~v~~GetLLda----a~~~gI~l 111 (194)
....++|++.+.+|+...+.++..++|-.+ +.+.|++.
T Consensus 21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~ 62 (104)
T 1wz0_A 21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 62 (104)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCT
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCc
Confidence 456789999988998899999999875444 34456643
No 94
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=34.91 E-value=29 Score=24.52 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 77 MINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
|++|++...+|+...+++...+|+.+.
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~L 27 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILET 27 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHH
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHH
Confidence 456777767888889999999999875
No 95
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=34.21 E-value=21 Score=24.66 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCEEEEEeC--CCchHHHH
Q 029354 77 MINVTFVDKDGEEKNIKVP--VGMSMLEA 103 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~--~GetLLda 103 (194)
|++|+|....|...++++. +.+|+.++
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~l 29 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQI 29 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHH
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHH
Confidence 5678888878877777655 99999986
No 96
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=33.78 E-value=1e+02 Score=21.95 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=26.0
Q ss_pred CCCCCCCcEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 70 GSNKQKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 70 ~~~~~~~~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
.+.......+|.|.-+||....-.....++|-++
T Consensus 6 p~~~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v 39 (109)
T 2dzk_A 6 SGRDRSTIARIQFRLPDGSSFTNQFPSDAPLEEA 39 (109)
T ss_dssp CCCCCSCCEEEEEECSSSCEEEEEECTTSBHHHH
T ss_pred CCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHH
Confidence 3344555677777779998888899999998776
No 97
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=33.38 E-value=34 Score=23.84 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=21.4
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCC-chHHHHHHHCCCC
Q 029354 74 QKDMINVTFVDKDGEEKNIKVPVG-MSMLEAAHENDIE 110 (194)
Q Consensus 74 ~~~~i~Vt~~~~~G~~~~v~v~~G-etLLdaa~~~gI~ 110 (194)
++.+.+|++ +| ..++++.+ .||.+.+...+++
T Consensus 17 ~~~~M~I~v---NG--e~~el~~~~~Tv~dLL~~L~~~ 49 (87)
T 1tyg_B 17 IGGRHMLQL---NG--KDVKWKKDTGTIQDLLASYQLE 49 (87)
T ss_dssp -----CEEE---TT--EEECCSSSCCBHHHHHHHTTCT
T ss_pred CCcceEEEE---CC--EEEECCCCCCcHHHHHHHhCCC
Confidence 444556765 36 56788888 9999999998765
No 98
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=33.09 E-value=88 Score=20.93 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=22.0
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCC-----chHHHH
Q 029354 74 QKDMINVTFVDKDGEEKNIKVPVG-----MSMLEA 103 (194)
Q Consensus 74 ~~~~i~Vt~~~~~G~~~~v~v~~G-----etLLda 103 (194)
...+++|++.. .|+.+++++... .|+.+.
T Consensus 4 ~~~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~L 37 (92)
T 1wxv_A 4 GSSGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDL 37 (92)
T ss_dssp CCSSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHH
T ss_pred CCCeEEEEEEE-CCEEEEEEECCCcCcccCcHHHH
Confidence 34578898875 577889999985 787765
No 99
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=32.30 E-value=60 Score=22.51 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=26.5
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCch---HHHH-HHHCCCC
Q 029354 76 DMINVTFVDKDGEEKNIKVPVGMS---MLEA-AHENDIE 110 (194)
Q Consensus 76 ~~i~Vt~~~~~G~~~~v~v~~Get---LLda-a~~~gI~ 110 (194)
+.++|++.+.+|+...+.++..++ |+++ +.+.|++
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~ 42 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS 42 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC
Confidence 467899988899989999999987 4444 3555654
No 100
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=32.09 E-value=1.1e+02 Score=22.11 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=23.6
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 74 QKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 74 ~~~~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
.+.+++|++... |+..++++...+|+.+.
T Consensus 29 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~L 57 (125)
T 1j8c_A 29 EPKIIKVTVKTP-KEKEEFAVPENSSVQQF 57 (125)
T ss_dssp CCCCEEEEEECS-SCEEEEEECTTCCHHHH
T ss_pred CCCcEEEEEEeC-CeEEEEEECCCCcHHHH
Confidence 356788888866 88889999999998775
No 101
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=31.68 E-value=81 Score=21.74 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=27.2
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCchHHHH----HHHCCCC
Q 029354 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEA----AHENDIE 110 (194)
Q Consensus 73 ~~~~~i~Vt~~~~~G~~~~v~v~~GetLLda----a~~~gI~ 110 (194)
+....++|++.+.+|+...+.++..++|-.+ +.+.|++
T Consensus 13 ~~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~ 54 (93)
T 2d07_B 13 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS 54 (93)
T ss_dssp --CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCC
T ss_pred CCCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCC
Confidence 3456789999988998889999999875544 3444554
No 102
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.44 E-value=70 Score=21.81 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCCEE--EE-EeCCCchHHHH
Q 029354 75 KDMINVTFVDKDGEEK--NI-KVPVGMSMLEA 103 (194)
Q Consensus 75 ~~~i~Vt~~~~~G~~~--~v-~v~~GetLLda 103 (194)
..|.+|++.+..|.+. ++ ++.+.+|+.++
T Consensus 8 ~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~l 39 (88)
T 2dzj_A 8 MKHYEVEILDAKTREKLCFLDKVEPHATIAEI 39 (88)
T ss_dssp CCCEEEEEEESSSCCCCEEEEEECSSCBHHHH
T ss_pred eEEEEEEEECCCCCEEeeEEeEcCCCCcHHHH
Confidence 5678898888776553 57 89999998765
No 103
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=31.23 E-value=39 Score=21.97 Aligned_cols=27 Identities=7% Similarity=0.059 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 77 MINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 77 ~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
+++|++...+|+..++++.+.+|+.+.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~l 29 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENV 29 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHH
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHH
Confidence 456777777888899999999999876
No 104
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=30.51 E-value=50 Score=22.51 Aligned_cols=31 Identities=6% Similarity=0.009 Sum_probs=20.1
Q ss_pred CCCCCCcEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 71 SNKQKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 71 ~~~~~~~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
++.+..+++|++.. |+...+++.+.+|+.+.
T Consensus 13 ~~~~~~~m~I~Vk~--g~~~~l~v~~~~TV~~L 43 (93)
T 2l7r_A 13 GLVPRGSMQLFVRA--QELHTFEVTGQETVAQI 43 (93)
T ss_dssp -------CEEEEES--SSEEEEECCSSCBHHHH
T ss_pred CCCCCCcEEEEEEC--CCEEEEEeCCCCcHHHH
Confidence 44555667888775 78889999999998775
No 105
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=29.76 E-value=68 Score=22.67 Aligned_cols=29 Identities=7% Similarity=0.053 Sum_probs=24.1
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 75 KDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 75 ~~~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
..+++|++...+|+...+.+.+.+|+.+.
T Consensus 33 ~~~m~I~Vk~~~G~~~~l~v~~~~TV~~L 61 (111)
T 3vdz_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENV 61 (111)
T ss_dssp GGCEEEEEECSSSCEEEEEECTTCBHHHH
T ss_pred CccEEEEEEeCCCCEEEEEeCCCCCHHHH
Confidence 34678888877898899999999999875
No 106
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=28.90 E-value=1.1e+02 Score=21.24 Aligned_cols=30 Identities=13% Similarity=0.238 Sum_probs=23.4
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 73 KQKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 73 ~~~~~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
....+++|++...+| ...+++...+|+.+.
T Consensus 13 ~~~~~m~I~Vk~~~g-~~~l~v~~~~TV~~L 42 (106)
T 1wx7_A 13 QDPHLIKVTVKTPKD-KEDFSVTDTCTIQQL 42 (106)
T ss_dssp CCSSEEEEEEECSSC-EEEEEEETTCCHHHH
T ss_pred CCCceEEEEEEeCCC-cEEEEECCCCcHHHH
Confidence 346778898887666 478999999998775
No 107
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=28.41 E-value=92 Score=21.20 Aligned_cols=32 Identities=6% Similarity=0.034 Sum_probs=23.7
Q ss_pred CCCCCcEEEEEEcCCCC-EEEEEeCCCchHHHH
Q 029354 72 NKQKDMINVTFVDKDGE-EKNIKVPVGMSMLEA 103 (194)
Q Consensus 72 ~~~~~~i~Vt~~~~~G~-~~~v~v~~GetLLda 103 (194)
+..|.+++|++...... ..++++.+.+|+.+.
T Consensus 2 ~~~~~~v~l~I~~~~~~~~~~~~v~~~~TV~~l 34 (95)
T 1v6e_A 2 SSGSSGVMVFISSSLNSFRSEKRYSRSLTIAEF 34 (95)
T ss_dssp CSCCCCEEEEEEETTSSSCEEEEECTTSBHHHH
T ss_pred CCCCcEEEEEEEECCCCeeEEEEcCccCHHHHH
Confidence 45577888888754332 588999999998775
No 108
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=27.99 E-value=1e+02 Score=22.97 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=26.3
Q ss_pred CCCCCCcEEEEEEcCCCCEE-EEEeCCCchHHHH
Q 029354 71 SNKQKDMINVTFVDKDGEEK-NIKVPVGMSMLEA 103 (194)
Q Consensus 71 ~~~~~~~i~Vt~~~~~G~~~-~v~v~~GetLLda 103 (194)
..+-++.+.|+|...+|... .+.+.+.+|+.++
T Consensus 10 ~~~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~l 43 (126)
T 1se9_A 10 EAEVHNQLEIKFRLTDGSDIGPKAFPDATTVSAL 43 (126)
T ss_dssp CCSSCCCEEEEEEETTSCEEEEEEECTTCBHHHH
T ss_pred hhhhcccEEEEEEECCCCEEEeeecCccCHHHHH
Confidence 34455788899988899776 6999999998765
No 109
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=27.89 E-value=1.2e+02 Score=20.82 Aligned_cols=35 Identities=9% Similarity=0.021 Sum_probs=23.0
Q ss_pred CcEEEEEEcCCC----CEEEEEeCCCchHHHH----HHHCCCC
Q 029354 76 DMINVTFVDKDG----EEKNIKVPVGMSMLEA----AHENDIE 110 (194)
Q Consensus 76 ~~i~Vt~~~~~G----~~~~v~v~~GetLLda----a~~~gI~ 110 (194)
.+++|++....+ +..++++.+.+|+.+. ....||+
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip 48 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVP 48 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcC
Confidence 445666655433 5778999999998775 2344554
No 110
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=27.30 E-value=83 Score=19.61 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=20.3
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 79 NVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 79 ~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
+|++...+|+...+++.+.+|+.+.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~l 26 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERI 26 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHH
T ss_pred EEEEECCCCCEEEEEECCCChHHHH
Confidence 4666667788889999999998775
No 111
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=27.23 E-value=1.2e+02 Score=21.49 Aligned_cols=63 Identities=5% Similarity=0.036 Sum_probs=38.8
Q ss_pred CCCCCcEEEEEEcCCC-CEEEEEeCCCchHHHH----HHHCCCCcccCCCCCccccccEEEEecccccCCCCCCChHHHh
Q 029354 72 NKQKDMINVTFVDKDG-EEKNIKVPVGMSMLEA----AHENDIELEGACEGSLACSTCHVIVMDMDYYNKLEDPTDEEND 146 (194)
Q Consensus 72 ~~~~~~i~Vt~~~~~G-~~~~v~v~~GetLLda----a~~~gI~l~~~CgG~G~CGTC~V~V~~ge~~~~l~~~~~~E~~ 146 (194)
.+..+.|+|++.+++| +...+.++..+.|-.+ +.+.|++. .+.+..+ +|+-. -+.-|+++.+
T Consensus 20 ~~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~----------~~vrF~F-DG~rI--~~~~TP~dLd 86 (97)
T 2jxx_A 20 TETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSG----------RKLSFFF-DGTKL--SGRELPADLG 86 (97)
T ss_dssp CCSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSS----------SCCEEEE-TTEEC--CSCSCHHHHT
T ss_pred CCCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCc----------ccEEEEE-CCEEc--CCCCCHHHcC
Confidence 3456788999998888 4788999998865544 34555542 2445555 66421 2334565544
Q ss_pred h
Q 029354 147 M 147 (194)
Q Consensus 147 ~ 147 (194)
|
T Consensus 87 M 87 (97)
T 2jxx_A 87 M 87 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 112
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=27.21 E-value=41 Score=22.80 Aligned_cols=34 Identities=9% Similarity=0.120 Sum_probs=23.4
Q ss_pred CcEEEEEEcCCCCEEEE-EeCCCchHHHH----HHHCCCC
Q 029354 76 DMINVTFVDKDGEEKNI-KVPVGMSMLEA----AHENDIE 110 (194)
Q Consensus 76 ~~i~Vt~~~~~G~~~~v-~v~~GetLLda----a~~~gI~ 110 (194)
.+++|++.. .|+.+++ ++.+.+|+.+. ....||+
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip 44 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVL 44 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCC
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcC
Confidence 455676663 5777888 88999999875 3345664
No 113
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=26.58 E-value=1e+02 Score=19.94 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=24.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCch---HHHH-HHHCCCC
Q 029354 78 INVTFVDKDGEEKNIKVPVGMS---MLEA-AHENDIE 110 (194)
Q Consensus 78 i~Vt~~~~~G~~~~v~v~~Get---LLda-a~~~gI~ 110 (194)
++|++.+.+|+...+.++..++ |+++ +.+.|++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~ 38 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS 38 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC
Confidence 5788888889989999999987 4444 3445654
No 114
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=24.91 E-value=1.4e+02 Score=27.14 Aligned_cols=34 Identities=3% Similarity=-0.013 Sum_probs=25.6
Q ss_pred EEEEEeCCCchHHHHHHHCCCCcccCCCCCccccccEEEEecc
Q 029354 89 EKNIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDM 131 (194)
Q Consensus 89 ~~~v~v~~GetLLdaa~~~gI~l~~~CgG~G~CGTC~V~V~~g 131 (194)
+++|++.+++||||++..-. ...|+. +|.+.| .|
T Consensus 44 ~y~v~~~~~~~vLd~L~~ik---~l~fr~-----sCam~I-NG 77 (514)
T 3kwl_A 44 SYFLEYQEDQYLLDLLKQLK---GVSYSE-----NIALKI-NQ 77 (514)
T ss_dssp EEEEECCTTCBHHHHHTTST---TCCCCS-----SCCEEE-TT
T ss_pred EEEEeCCCCCcHHHHHHHhh---hCeeec-----cceEEE-CC
Confidence 45678889999999997655 445763 788998 55
No 115
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=24.69 E-value=94 Score=19.36 Aligned_cols=25 Identities=8% Similarity=0.118 Sum_probs=19.9
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 79 NVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 79 ~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
+|++...+|+...+++.+.+|+.+.
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~l 26 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENV 26 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHH
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHH
Confidence 4666666788889999999998775
No 116
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=24.66 E-value=1.1e+02 Score=21.51 Aligned_cols=28 Identities=7% Similarity=0.080 Sum_probs=23.2
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 76 DMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 76 ~~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
.+++|++...+|+...+++...+|+.+.
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~L 61 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENV 61 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHH
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHH
Confidence 4678888877888889999999998775
No 117
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=23.97 E-value=92 Score=21.83 Aligned_cols=30 Identities=7% Similarity=0.114 Sum_probs=21.6
Q ss_pred CCCcEEEEEEcCCCC--EEEEEeCCCchHHHH
Q 029354 74 QKDMINVTFVDKDGE--EKNIKVPVGMSMLEA 103 (194)
Q Consensus 74 ~~~~i~Vt~~~~~G~--~~~v~v~~GetLLda 103 (194)
.+..++|+|...+|. ..++++.+.+|+.+.
T Consensus 20 ~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~L 51 (99)
T 2kdb_A 20 QGHPVTLIIKAPNQKYSDQTISCFLNWTVGKL 51 (99)
T ss_dssp ---CEEEEEECTTSSSCCEEEEECTTSBHHHH
T ss_pred CCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHH
Confidence 445678888877776 468888999998775
No 118
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=23.44 E-value=1.1e+02 Score=20.30 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 78 INVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 78 i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
.+|++..-.|+..++++.+.+|+.+.
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~L 36 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVV 36 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHH
T ss_pred eEEEEEecCCcEEEEEECCCChHHHH
Confidence 46777667898899999999998875
No 119
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=23.05 E-value=95 Score=20.70 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=20.3
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 79 NVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 79 ~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
+|++...+|+..++++.+.+|+.+.
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~L 26 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERI 26 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHH
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHH
Confidence 4666666888899999999999875
No 120
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.01 E-value=36 Score=22.30 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=18.8
Q ss_pred EEEEeCCCchHHHHHHHCCCCc
Q 029354 90 KNIKVPVGMSMLEAAHENDIEL 111 (194)
Q Consensus 90 ~~v~v~~GetLLdaa~~~gI~l 111 (194)
.+..+.+|+||..+|.+.++.+
T Consensus 16 ~~y~V~~GDTL~~IA~~~~~~~ 37 (77)
T 2djp_A 16 LEHQLEPGDTLAGLALKYGVTM 37 (77)
T ss_dssp EEECCCTTCCHHHHHHHHTCCH
T ss_pred EEEEECCCCcHHHHHHHHCcCH
Confidence 4568899999999999998865
No 121
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=22.88 E-value=1.5e+02 Score=20.73 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCEEEEEeC-CCchHHHH
Q 029354 78 INVTFVDKDGEEKNIKVP-VGMSMLEA 103 (194)
Q Consensus 78 i~Vt~~~~~G~~~~v~v~-~GetLLda 103 (194)
..|+|..++|. .+|++. +.+|+.+.
T Consensus 8 M~irvrs~~G~-~~v~v~~~~~Tv~~L 33 (107)
T 1wf9_A 8 TMLRVRSRDGL-ERVSVDGPHITVSQL 33 (107)
T ss_dssp EEEEEECSSCE-EEEEECCTTSBHHHH
T ss_pred EEEEEECCCCC-EEEEECCCCCcHHHH
Confidence 45888888884 479999 99998776
No 122
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=22.77 E-value=37 Score=23.10 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=17.2
Q ss_pred hHHHHHHHCCCC-----cccCCCCCccccccE
Q 029354 99 SMLEAAHENDIE-----LEGACEGSLACSTCH 125 (194)
Q Consensus 99 tLLdaa~~~gI~-----l~~~CgG~G~CGTC~ 125 (194)
..|+.+.+.|.- ..++|. +|.|+.|.
T Consensus 35 rdL~~Le~~G~l~R~~~~GgaC~-~g~C~~C~ 65 (78)
T 1xn7_A 35 AMLQQLESMGKAVRIQEEPDGCL-SGSCKSCP 65 (78)
T ss_dssp HHHHHHHHHTSEEEECCCCCCCC-CSSCCCCC
T ss_pred HHHHHHHHCCCEEEecCcCCCCC-CCCCCCCC
Confidence 456677777762 357885 46788884
No 123
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=22.39 E-value=1.7e+02 Score=20.91 Aligned_cols=37 Identities=27% Similarity=0.330 Sum_probs=26.6
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCch---HHHH-HHHCCCC
Q 029354 73 KQKDMINVTFVDKDGEEKNIKVPVGMS---MLEA-AHENDIE 110 (194)
Q Consensus 73 ~~~~~i~Vt~~~~~G~~~~v~v~~Get---LLda-a~~~gI~ 110 (194)
.+...++|++.+ +|+...+.++..++ |+++ +.+.|++
T Consensus 27 ~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~ 67 (106)
T 2eke_C 27 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE 67 (106)
T ss_dssp CCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred CCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCC
Confidence 345678999998 89889999999886 4444 3444554
No 124
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=22.30 E-value=99 Score=20.62 Aligned_cols=25 Identities=8% Similarity=0.118 Sum_probs=20.4
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 79 NVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 79 ~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
+|++...+|+...+++.+.+|+.+.
T Consensus 3 ~i~vk~~~g~~~~~~v~~~~TV~~L 27 (96)
T 3k9o_B 3 QIFVKTLTGKTITLEVEPSDTIENV 27 (96)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHH
Confidence 5666667888899999999999875
No 125
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=22.25 E-value=1.3e+02 Score=20.71 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=22.8
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 74 QKDMINVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 74 ~~~~i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
.+.+++|++... |...++++.+.+|+.+.
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~L 50 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQF 50 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHH
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHH
Confidence 356778888765 77889999999998775
No 126
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=21.96 E-value=1.1e+02 Score=22.39 Aligned_cols=39 Identities=15% Similarity=0.339 Sum_probs=26.5
Q ss_pred CCCCCcEEEEEEcCCCCEEEEEeCCCchHHHH----HHHCCCC
Q 029354 72 NKQKDMINVTFVDKDGEEKNIKVPVGMSMLEA----AHENDIE 110 (194)
Q Consensus 72 ~~~~~~i~Vt~~~~~G~~~~v~v~~GetLLda----a~~~gI~ 110 (194)
+.+.+.|+|++.+.+|.+..|.++..++|-.+ +.+.|++
T Consensus 35 k~~~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~ 77 (115)
T 3kyd_D 35 KKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP 77 (115)
T ss_dssp ----CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred CCCCCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCC
Confidence 33457889999998998889999998865443 3455653
No 127
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=21.52 E-value=1.1e+02 Score=21.43 Aligned_cols=32 Identities=9% Similarity=0.175 Sum_probs=21.8
Q ss_pred CCCCCcEEEEEEcCCCCEEEE--EeCCCchHHHH
Q 029354 72 NKQKDMINVTFVDKDGEEKNI--KVPVGMSMLEA 103 (194)
Q Consensus 72 ~~~~~~i~Vt~~~~~G~~~~v--~v~~GetLLda 103 (194)
...+..++|++....|+..++ ++.+.+|+.++
T Consensus 14 ~~~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~l 47 (98)
T 4a20_A 14 KMDNAAVHLTLKKIQAPKFSIEHDFSPSDTILQI 47 (98)
T ss_dssp ----CCEEEEEEECSSSCEEEEEEECTTCBHHHH
T ss_pred cCCCCCEEEEEEcCCCCEEEEEEecCCCChHHHH
Confidence 345667788888878876555 66699999985
No 128
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=21.19 E-value=1.1e+02 Score=19.25 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHH
Q 029354 78 INVTFVDKDGEEKNIKVPVGMSMLEA 103 (194)
Q Consensus 78 i~Vt~~~~~G~~~~v~v~~GetLLda 103 (194)
++|++.. +|+..++++.+.+|+.+.
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~L 29 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQF 29 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHH
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHH
Confidence 5677776 787788999999998775
Done!