Query 029355
Match_columns 194
No_of_seqs 129 out of 1030
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 18:58:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulp_A Single-strand binding p 100.0 2.8E-30 9.5E-35 199.7 13.1 110 82-194 4-116 (124)
2 4dam_A Single-stranded DNA-bin 100.0 2.7E-30 9.4E-35 201.9 12.7 108 79-191 10-117 (128)
3 3lgj_A Single-stranded DNA-bin 100.0 8.5E-30 2.9E-34 207.5 12.6 110 82-194 21-131 (169)
4 3afp_A Single-stranded DNA-bin 100.0 1.9E-29 6.5E-34 205.0 14.1 107 81-190 1-107 (168)
5 3pgz_A Single-stranded DNA-bin 100.0 1.5E-29 5.3E-34 210.0 13.4 111 81-194 22-134 (193)
6 1qvc_A Single stranded DNA bin 100.0 4.7E-29 1.6E-33 198.0 14.2 102 81-186 2-103 (145)
7 3tqy_A Single-stranded DNA-bin 100.0 6.5E-29 2.2E-33 200.1 14.7 105 81-189 4-109 (158)
8 3koj_A Uncharacterized protein 100.0 2.4E-29 8.3E-34 191.6 11.4 97 82-189 9-106 (108)
9 3ull_A DNA binding protein; DN 100.0 3E-29 1E-33 195.9 11.2 107 80-189 9-121 (132)
10 3eiv_A Single-stranded DNA-bin 100.0 1.4E-28 4.7E-33 205.2 13.6 108 81-191 1-108 (199)
11 1z9f_A Single-strand binding p 100.0 7.1E-29 2.4E-33 199.1 11.3 108 78-191 10-118 (153)
12 2vw9_A Single-stranded DNA bin 100.0 1.9E-28 6.4E-33 192.3 13.3 102 83-189 1-102 (134)
13 1eqq_A Single stranded DNA bin 100.0 4.3E-29 1.5E-33 204.8 9.4 110 81-194 3-112 (178)
14 3vdy_A SSB, single-stranded DN 100.0 3.1E-28 1E-32 186.0 13.3 100 83-189 4-103 (116)
15 3k7u_C MP18 RNA editing comple 100.0 1.4E-28 4.6E-33 196.8 10.0 101 81-187 3-104 (148)
16 3k81_C MP18 RNA editing comple 99.9 2.3E-27 7.8E-32 192.5 8.9 100 82-187 20-121 (164)
17 4dni_A Fusion protein of RNA-e 99.9 4.9E-26 1.7E-30 196.2 12.6 132 47-187 110-244 (257)
18 1se8_A Single-strand binding p 99.9 2.3E-25 7.8E-30 195.5 13.1 102 83-189 4-106 (301)
19 2fxq_A Single-strand binding p 99.9 4.1E-25 1.4E-29 189.8 14.2 109 72-189 115-224 (264)
20 1v1q_A Primosomal replication 99.9 2.9E-25 9.8E-30 175.0 10.3 97 81-187 16-112 (134)
21 2fxq_A Single-strand binding p 99.9 2.9E-25 9.9E-30 190.7 10.7 101 83-189 4-104 (264)
22 1se8_A Single-strand binding p 99.9 8.1E-25 2.8E-29 192.0 12.9 112 73-190 117-229 (301)
23 1txy_A Primosomal replication 99.9 2.4E-24 8.2E-29 162.0 9.2 95 84-188 2-96 (104)
24 4gs3_A Single-stranded DNA-bin 99.9 6.5E-24 2.2E-28 161.5 10.1 90 84-188 11-101 (107)
25 3k8a_A Putative primosomal rep 99.9 2.1E-23 7.2E-28 157.4 9.6 97 80-185 3-99 (103)
26 3fhw_A Primosomal replication 99.9 1.2E-22 4E-27 156.3 9.2 92 84-188 1-92 (115)
27 3en2_A Probable primosomal rep 99.9 6.3E-22 2.1E-26 149.1 7.6 84 84-173 2-85 (101)
28 3stb_C RNA-editing complex pro 99.8 6.4E-20 2.2E-24 146.3 13.6 96 82-186 42-137 (148)
29 4dni_A Fusion protein of RNA-e 99.8 7.8E-20 2.7E-24 157.5 10.4 95 82-188 28-123 (257)
30 4dka_C RNA-editing complex pro 97.4 0.0028 9.7E-08 47.4 11.4 75 86-173 5-81 (105)
31 3e0e_A Replication protein A; 96.3 0.02 6.9E-07 41.4 8.2 79 85-193 12-94 (97)
32 2k50_A Replication factor A re 95.6 0.03 1E-06 41.1 6.6 68 86-171 18-89 (115)
33 3dm3_A Replication factor A; p 95.5 0.064 2.2E-06 39.5 8.0 66 85-168 15-82 (105)
34 2k75_A Uncharacterized protein 94.5 0.22 7.5E-06 36.5 8.4 76 83-192 12-90 (106)
35 1o7i_A SSB, SSO2364, single st 93.8 0.16 5.4E-06 37.7 6.5 63 84-167 12-78 (119)
36 1ynx_A Replication factor-A pr 92.5 0.21 7.3E-06 36.8 5.4 64 83-163 13-79 (114)
37 3f2b_A DNA-directed DNA polyme 89.2 3.3 0.00011 41.7 11.8 73 83-172 16-89 (1041)
38 4gop_B Putative uncharacterize 88.5 1.4 4.9E-05 33.2 7.0 62 83-167 35-99 (136)
39 1jmc_A Protein (replication pr 87.7 0.92 3.1E-05 37.0 5.8 64 83-163 17-83 (246)
40 3kdf_D Replication protein A 3 86.8 2.6 8.9E-05 31.5 7.5 62 84-167 31-94 (132)
41 2hql_A Hypothetical protein Mg 84.2 10 0.00035 27.7 10.5 88 83-185 7-94 (110)
42 3au7_A TIAS, putative uncharac 81.1 4.3 0.00015 36.6 7.5 78 70-167 265-348 (402)
43 2pi2_A Replication protein A 3 75.2 7.8 0.00027 32.5 7.0 63 83-167 70-134 (270)
44 2hbp_A Cytoskeleton assembly c 71.4 4 0.00014 28.1 3.5 30 163-193 1-30 (68)
45 4gop_C Putative uncharacterize 71.0 8.5 0.00029 34.3 6.6 64 83-163 12-78 (444)
46 2hpi_A DNA polymerase III alph 64.3 7.9 0.00027 39.6 5.4 65 86-168 1044-1108(1220)
47 2kbn_A Conserved protein; nucl 59.5 46 0.0016 23.8 9.2 61 84-167 15-76 (109)
48 4hik_A Protection of telomeres 49.1 12 0.00043 28.8 3.1 26 135-161 66-91 (143)
49 1wjj_A Hypothetical protein F2 48.2 31 0.0011 26.6 5.3 43 136-192 75-117 (145)
50 1jmc_A Protein (replication pr 46.7 52 0.0018 26.3 6.8 68 86-170 140-210 (246)
51 2vl6_A SSO MCM N-TER, minichro 45.6 56 0.0019 26.9 6.9 49 133-187 210-260 (268)
52 1ltl_A DNA replication initiat 29.4 1.2E+02 0.0041 25.1 6.4 46 133-187 197-242 (279)
53 3ebt_A Uncharacterized NTF2-li 27.4 1.5E+02 0.0051 20.2 6.2 36 154-193 78-115 (132)
54 2f41_A Transcription factor FA 26.8 1.1E+02 0.0037 21.5 5.0 37 152-193 72-108 (121)
55 3ebe_A Protein MCM10 homolog; 24.9 59 0.002 26.3 3.5 63 86-163 57-119 (200)
56 3kf6_A Protein STN1; OB fold, 24.5 1.1E+02 0.0037 23.7 4.9 63 84-167 47-111 (159)
57 1o7i_A SSB, SSO2364, single st 24.3 1.9E+02 0.0066 20.5 6.1 41 152-193 7-52 (119)
58 2f3x_A Transcription factor FA 24.3 1.3E+02 0.0045 22.6 5.3 38 151-193 107-144 (157)
59 2isb_A Fumarase, FUM-1; NP_069 23.7 83 0.0029 25.5 4.2 31 137-168 16-46 (192)
60 2k50_A Replication factor A re 20.7 1.6E+02 0.0053 20.6 4.8 41 152-193 12-57 (115)
No 1
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=99.97 E-value=2.8e-30 Score=199.72 Aligned_cols=110 Identities=29% Similarity=0.506 Sum_probs=98.8
Q ss_pred ccccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeC-chHHHHHHhcCCCCCeEE
Q 029355 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHN-EILGSYAVKQLVKNSSVY 160 (194)
Q Consensus 82 ~~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg-~~lAe~v~~~L~KGs~V~ 160 (194)
++||+|+|+|+|++||++|++++|.++++|+||+++.|+++++|++ .+.++||+|++|+ + +|+.++++|+||++|+
T Consensus 4 ~~~N~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~~~~G~~--~~~t~~~~v~~wg~~-~Ae~~~~~l~KG~~V~ 80 (124)
T 3ulp_A 4 KSLNKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNEL--KSKTDWHRIVVYDQN-IVDLIDKYLRKGRRVY 80 (124)
T ss_dssp CCEEEEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEECTTTCCE--EEEEEEEEEEECCHH-HHHHHHHHCCTTCEEE
T ss_pred ccceEEEEEEEECCCcEEEECCCCCEEEEEEEEEccceecccCCcE--ecccEEEEEEEEEch-HHHHHHhhcCCCCEEE
Confidence 6799999999999999999999999999999999999988766887 3589999999999 7 9999999999999999
Q ss_pred EEEEeEEeeeecCC-CCeEEEEEEEEEEec-CeeeC
Q 029355 161 VEGDIEIRVYNDSI-NGEVKNIPEICIRRD-GNSYY 194 (194)
Q Consensus 161 VeGrL~tr~y~d~~-dG~~r~~~EI~v~~~-G~~~f 194 (194)
|+|+|+++.|+|+. ||++++.+||.|+.. +.|.|
T Consensus 81 V~G~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~ 116 (124)
T 3ulp_A 81 VQGSLHTRKWHTNDMNSQPKQITEIILSYNKGDLIF 116 (124)
T ss_dssp EEEEEEEEEECC----CCCEEEEEEEECTTTCEEEE
T ss_pred EEEEEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEE
Confidence 99999999999864 799999999999853 45654
No 2
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=99.97 E-value=2.7e-30 Score=201.86 Aligned_cols=108 Identities=19% Similarity=0.236 Sum_probs=98.1
Q ss_pred cccccccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCe
Q 029355 79 WGFRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSS 158 (194)
Q Consensus 79 ~~m~~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~ 158 (194)
+.-..+|+|+|+|+|++||++|++++| ++++|+||+++.|.++++|++. +..++||+|++|++ +||.++++|+||++
T Consensus 10 ~~~~~~N~V~LiGrL~~dPelr~t~~G-~v~~fslAv~~~~~d~~~Ge~~-d~~t~w~~v~~wg~-~Ae~~~~~l~KG~~ 86 (128)
T 4dam_A 10 HGSMNEIMICAVGNVATTPVFRDLANG-PSVRFRLAVTARYWDREKNAWT-DGHTNFFTVWANRQ-LATNASGSLAVGDP 86 (128)
T ss_dssp --CBCCCEEEEEEEECSCCEEEEETTE-EEEEEEEEEEEEEEETTTTEEE-EEEEEEEEEEEEHH-HHHHHHHHCCTTCE
T ss_pred CCCcceeEEEEEEEECCCCEEEEcCCC-CEEEEEEEEcCceecccCCcee-cCCcEEEEEEEEcH-HHHHHHHhcCCCCE
Confidence 343459999999999999999999999 9999999999999887678873 23899999999999 99999999999999
Q ss_pred EEEEEEeEEeeeecCCCCeEEEEEEEEEEecCe
Q 029355 159 VYVEGDIEIRVYNDSINGEVKNIPEICIRRDGN 191 (194)
Q Consensus 159 V~VeGrL~tr~y~d~~dG~~r~~~EI~v~~~G~ 191 (194)
|+|+|+|+++.| |+ ||++++.+||.|+..|.
T Consensus 87 V~VeGrL~~~~~-dk-dG~~r~~~ev~a~~vg~ 117 (128)
T 4dam_A 87 VVVQGRLKVRTD-VR-EGQSRTSADIDAVAIGH 117 (128)
T ss_dssp EEEEEEEEEEEE-EE-TTEEEEEEEEEEEEEEE
T ss_pred EEEEEEEEEeEE-cC-CCCEEEEEEEEEEEEEe
Confidence 999999999999 88 99999999999998763
No 3
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=99.96 E-value=8.5e-30 Score=207.51 Aligned_cols=110 Identities=26% Similarity=0.456 Sum_probs=84.4
Q ss_pred ccccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeEEE
Q 029355 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYV 161 (194)
Q Consensus 82 ~~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V~V 161 (194)
.+||+|+|+|+|++||++|++++|.++++|+||++++|+++++|++ .+.++||+|++|++++|+.+.++|+||++|+|
T Consensus 21 ~~mNkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~--~~~t~~i~vv~wg~~lAe~~~~~l~KG~~V~V 98 (169)
T 3lgj_A 21 SMLNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQK--VEKTEWHSVVVFNPHFAKIALQYLHKGSKVYI 98 (169)
T ss_dssp CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC--------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEE
T ss_pred cceeEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCcc--ccccEEEEEEEeCHHHHHHHHHhCCCCCEEEE
Confidence 6799999999999999999999999999999999999987656887 46899999999998789999999999999999
Q ss_pred EEEeEEeeeecCCCCeEEEEEEEEEEe-cCeeeC
Q 029355 162 EGDIEIRVYNDSINGEVKNIPEICIRR-DGNSYY 194 (194)
Q Consensus 162 eGrL~tr~y~d~~dG~~r~~~EI~v~~-~G~~~f 194 (194)
+|+|+++.|+|+ ||++++.+||+|+. +..|.|
T Consensus 99 eGrL~~r~~~dk-dG~~r~~~eIva~~~~~~i~~ 131 (169)
T 3lgj_A 99 EGKLQTRKWQDK-NGHDRYTTEIVLPQYKGELHL 131 (169)
T ss_dssp EEEEEEECC---------CEEEEEECTTCCEEEE
T ss_pred EEEEEEEEEECC-CCCEEEEEEEEEEeccCcEEE
Confidence 999999999999 99999999999974 455554
No 4
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=99.96 E-value=1.9e-29 Score=205.04 Aligned_cols=107 Identities=20% Similarity=0.335 Sum_probs=90.6
Q ss_pred cccccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeEE
Q 029355 81 FRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVY 160 (194)
Q Consensus 81 m~~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V~ 160 (194)
|.+||+|+|+|+|++||++|++++|.++++|+||++++|.++++|+++ +..++||+|++|++ +|+.++++|+||++|+
T Consensus 1 Ma~~N~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~~Ge~~-d~~t~~~~v~~wg~-~Ae~~~~~l~KG~~V~ 78 (168)
T 3afp_A 1 MAGDTTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWK-DGEALFLRCNIWRE-AAENVAESLTRGARVI 78 (168)
T ss_dssp --CCCEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCC-CCCCEEEEEEEEHH-HHHHHHHHCCTTCEEE
T ss_pred CCccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEccccccccCCcEe-cCCcEEEEEEEehH-HHHHHHHhCCCCCEEE
Confidence 678999999999999999999999999999999999888776668873 24699999999999 9999999999999999
Q ss_pred EEEEeEEeeeecCCCCeEEEEEEEEEEecC
Q 029355 161 VEGDIEIRVYNDSINGEVKNIPEICIRRDG 190 (194)
Q Consensus 161 VeGrL~tr~y~d~~dG~~r~~~EI~v~~~G 190 (194)
|+|+|+++.|+|+ ||++++.+||.|+.+|
T Consensus 79 VeGrL~~~~~~dk-dG~~r~~~ev~a~~v~ 107 (168)
T 3afp_A 79 VTGRLKQRSFETR-EGEKRTVVEVEVDEIG 107 (168)
T ss_dssp EEEEEEEEEEC-C-CSCCEEEEEEEEEEEE
T ss_pred EEEEEEeeeEECC-CCcEEEEEEEEEEEee
Confidence 9999999999999 9999999999999644
No 5
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=99.96 E-value=1.5e-29 Score=210.04 Aligned_cols=111 Identities=25% Similarity=0.479 Sum_probs=97.4
Q ss_pred cc-cccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeE
Q 029355 81 FR-GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSV 159 (194)
Q Consensus 81 m~-~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V 159 (194)
|. +||+|+|+|+|++||++|++++|++|++|+||+++.|+++++|++ .+.++||+|++|++.+|+.+.++|+||++|
T Consensus 22 Ma~~mNkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~--~e~Tdwi~Vvawgk~lAe~~~~yL~KGs~V 99 (193)
T 3pgz_A 22 MAGSLNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNER--KERTEWHNIVIFNENLVKVVEQYLKKGSKI 99 (193)
T ss_dssp -CCCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-------EEEEEEEEEEECCHHHHHHHHHHCCTTCEE
T ss_pred HhhhcCEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCce--eeeeEEEEEEEECHHHHHHHHhhcCCCCEE
Confidence 54 799999999999999999999999999999999999987766877 358999999999955899999999999999
Q ss_pred EEEEEeEEeeeecCCCCeEEEEEEEEEEec-CeeeC
Q 029355 160 YVEGDIEIRVYNDSINGEVKNIPEICIRRD-GNSYY 194 (194)
Q Consensus 160 ~VeGrL~tr~y~d~~dG~~r~~~EI~v~~~-G~~~f 194 (194)
+|+|+|+++.|+|+ ||++++.+||+|+.. +.|.|
T Consensus 100 ~VeGrL~trswedk-dG~kr~~tEVva~~~~~~i~f 134 (193)
T 3pgz_A 100 YIEGQLQTRKWQDQ-NGNDRYTTEIVLQKYRGELQM 134 (193)
T ss_dssp EEEEEEEEEEEECT-TSCEEEEEEEEECTTCCEEEE
T ss_pred EEEEEEEEEEeECC-CCCEEEEEEEEEEeccCceEE
Confidence 99999999999999 999999999999964 46654
No 6
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=99.96 E-value=4.7e-29 Score=198.04 Aligned_cols=102 Identities=27% Similarity=0.560 Sum_probs=95.6
Q ss_pred cccccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeEE
Q 029355 81 FRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVY 160 (194)
Q Consensus 81 m~~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V~ 160 (194)
+++||+|+|+|+|++||++|++++|.+++.|+||+++.|+++++|++ .+.++||+|++|++ +|+.++++|+||++|+
T Consensus 2 ~~~mN~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~--~~~t~~~~v~~wg~-~Ae~~~~~l~KG~~V~ 78 (145)
T 1qvc_A 2 SRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEM--KEQTEWHRVVLFGK-LAEVASEYLRKGSQVY 78 (145)
T ss_dssp CCCEEEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSC--CCCCEEEEEEEETH-HHHHHHHHCCTTCEEE
T ss_pred CCceEEEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcE--ecccEEEEEEEehH-HHHHHHHhcCCCCEEE
Confidence 46799999999999999999999999999999999999987756887 46899999999999 9999999999999999
Q ss_pred EEEEeEEeeeecCCCCeEEEEEEEEE
Q 029355 161 VEGDIEIRVYNDSINGEVKNIPEICI 186 (194)
Q Consensus 161 VeGrL~tr~y~d~~dG~~r~~~EI~v 186 (194)
|+|+|+++.|+|+ ||++++.+||.|
T Consensus 79 V~G~L~~~~~~d~-dG~~r~~~ei~a 103 (145)
T 1qvc_A 79 IEGQLRTRKWTDQ-SGQDRYTTEVVV 103 (145)
T ss_dssp EEEEEEEEEECSS-SSCEEEEEEEEC
T ss_pred EEEEEEeeEEECC-CCcEEEEEEEee
Confidence 9999999999999 999999999943
No 7
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=99.96 E-value=6.5e-29 Score=200.10 Aligned_cols=105 Identities=29% Similarity=0.498 Sum_probs=98.5
Q ss_pred cc-cccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeE
Q 029355 81 FR-GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSV 159 (194)
Q Consensus 81 m~-~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V 159 (194)
|. +||+|+|+|+|++||++|++++|.++++|+||+++.|+++++|++ .+.++||+|++|++ +|+.+.++|+||++|
T Consensus 4 Ma~~mN~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~~Ge~--~e~t~~i~vv~wg~-~Ae~~~~~l~KG~~V 80 (158)
T 3tqy_A 4 MARGVNKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGEL--QERTEWHRIAFFNR-LAEIVGEYLRKGSKI 80 (158)
T ss_dssp CCSCEEEEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTTTCCE--EEEEEEEEEEEETH-HHHHHHHHCCTTCEE
T ss_pred hhcccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccCCCCE--eeeeEEEEEEEEhH-HHHHHHhhcCCCCEE
Confidence 54 899999999999999999999999999999999999987656887 35899999999999 999999999999999
Q ss_pred EEEEEeEEeeeecCCCCeEEEEEEEEEEec
Q 029355 160 YVEGDIEIRVYNDSINGEVKNIPEICIRRD 189 (194)
Q Consensus 160 ~VeGrL~tr~y~d~~dG~~r~~~EI~v~~~ 189 (194)
+|+|+|+++.|+|+ ||++++.+||+|+..
T Consensus 81 ~VeG~L~~~~~~dk-dG~~r~~~eV~a~~i 109 (158)
T 3tqy_A 81 YIEGSLRTRKWQDK-NGVDRYTTEIIANEM 109 (158)
T ss_dssp EEEEEEEEEEEECS-SSCEEEEEEEEEEEE
T ss_pred EEEEEEEeeeEECC-CCCEEEEEEEEEeEE
Confidence 99999999999999 999999999999954
No 8
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=99.96 E-value=2.4e-29 Score=191.63 Aligned_cols=97 Identities=13% Similarity=0.192 Sum_probs=80.3
Q ss_pred ccccEEEEEEEeCCCceEEEecCC-eEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeEE
Q 029355 82 RGVHKAIICGKVKDTPVQKILRNG-KTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVY 160 (194)
Q Consensus 82 ~~mNkV~LiGrVg~dPelk~t~nG-~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V~ 160 (194)
..||.|+|+|+|++||++|++++| .++++|+||++ .|+++ ..++||+|++||+ +||.+.++|+||++|+
T Consensus 9 ~~~~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~-~~~~~--------~~t~fi~vv~wgk-~AE~~~~yl~KG~~V~ 78 (108)
T 3koj_A 9 SHMNSCILQATVVEAPQLRYAQDNQTPVAEMVVQFP-GLSSK--------DAPARLKVVGWGA-VAQELQDRCRLNDEVV 78 (108)
T ss_dssp SSCEEEEEEEEEEEEEEEEECTTSSSEEEEEEEEEC-C-------------CCEEEEEEEETH-HHHHHHHHCCTTCEEE
T ss_pred cccceEEEEEEECCCCEEEEeCCCCEEEEEEEEEEC-CcccC--------CCcEEEEEEEEhH-HHHHHHHhCCCCCEEE
Confidence 469999999999999999999998 99999999999 66542 3799999999999 9999999999999999
Q ss_pred EEEEeEEeeeecCCCCeEEEEEEEEEEec
Q 029355 161 VEGDIEIRVYNDSINGEVKNIPEICIRRD 189 (194)
Q Consensus 161 VeGrL~tr~y~d~~dG~~r~~~EI~v~~~ 189 (194)
|+|+|+++.|+|+ ||++++.+||+|++.
T Consensus 79 VeGrL~~r~y~~k-dG~kr~~tEVva~~i 106 (108)
T 3koj_A 79 LEGRLRINSLLKP-DGNREKQTELTVTRV 106 (108)
T ss_dssp EEEEEEEEC---------CCEEEEEEEEE
T ss_pred EEEEEEeeeEECC-CCCEEEEEEEEEEEE
Confidence 9999999999999 999999999999953
No 9
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=99.96 E-value=3e-29 Score=195.94 Aligned_cols=107 Identities=27% Similarity=0.453 Sum_probs=94.7
Q ss_pred cc-ccccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceecc-----CCCcccCCCCceEEEEEEeCchHHHHHHhcC
Q 029355 80 GF-RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQR-----IVGSKDLPKPVQWHRIAVHNEILGSYAVKQL 153 (194)
Q Consensus 80 ~m-~~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr-----~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L 153 (194)
.| ++||+|+|+|+|++||++|++++|.++++|+||+++.|+++ ++|++ ...++||+|++||+.+|+.++++|
T Consensus 9 ~m~~~mN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~g~~~~~g~~--~~~t~w~~v~~wg~~~Ae~~~~~l 86 (132)
T 3ull_A 9 VLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDV--SQKTTWHRISVFRPGLRDVAYQYV 86 (132)
T ss_dssp -CCCCEEEEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC---------CC--EEEEEEEEEEECSTTHHHHHHHHC
T ss_pred hhhhcCcEEEEEEEECCCCEEEECCCCCEEEEEEEEEecceeccccccccCCce--ecceEEEEEEEEchHHHHHHHhhC
Confidence 35 48999999999999999999999999999999999999862 34665 368999999999933999999999
Q ss_pred CCCCeEEEEEEeEEeeeecCCCCeEEEEEEEEEEec
Q 029355 154 VKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRD 189 (194)
Q Consensus 154 ~KGs~V~VeGrL~tr~y~d~~dG~~r~~~EI~v~~~ 189 (194)
+||++|+|+|+|+++.|+|+ ||++++.++|.|+..
T Consensus 87 ~KG~~V~V~G~L~~~~~~d~-dG~~r~~~ev~a~~i 121 (132)
T 3ull_A 87 KKGSRIYLEGKIDYGEYMDK-NNVRRQATTIIADNI 121 (132)
T ss_dssp CTTCEEEEEEEEECCCEESS-SSEECCCEEEEEEEE
T ss_pred CCCCEEEEEEEEEeeEEECC-CCCEEEEEEEEEEEE
Confidence 99999999999999999999 999999999999943
No 10
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=99.96 E-value=1.4e-28 Score=205.17 Aligned_cols=108 Identities=19% Similarity=0.278 Sum_probs=82.5
Q ss_pred cccccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeEE
Q 029355 81 FRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVY 160 (194)
Q Consensus 81 m~~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V~ 160 (194)
|.++|+|+|+|+|++||++|++++|++|++|+||+++++.++++|+++ +..++||+|++|++ +||.++++|+||++|+
T Consensus 1 Ma~~N~V~LiGrL~~DPElR~T~~G~~Va~FsLAvn~R~~d~~~Ge~~-d~~T~wi~Vvawgk-lAE~v~~~L~KG~~V~ 78 (199)
T 3eiv_A 1 MAGETVITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNEWK-DGESLFLTCSVWRQ-AAENVAESLQRGMRVI 78 (199)
T ss_dssp ---CCEEEEEEEESSCCEEEECTTCCEEEEEEEEECC------------CCCCEEEEEEEETH-HHHHHHHHCCTTCEEE
T ss_pred CCcccEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCcccccCCCcEe-cCccEEEEEEEEhH-HHHHHHHhcCCCCEEE
Confidence 778999999999999999999999999999999999766555568773 35899999999999 9999999999999999
Q ss_pred EEEEeEEeeeecCCCCeEEEEEEEEEEecCe
Q 029355 161 VEGDIEIRVYNDSINGEVKNIPEICIRRDGN 191 (194)
Q Consensus 161 VeGrL~tr~y~d~~dG~~r~~~EI~v~~~G~ 191 (194)
|+|+|+++.|+|+ ||++++.+||+|+..|.
T Consensus 79 VeGrL~~rswedk-dG~kr~~~eVvA~~Ig~ 108 (199)
T 3eiv_A 79 VQGRLKQRSYEDR-EGVKRTVYELDVDEVGA 108 (199)
T ss_dssp EEEEEEEEC---------CCEEEEEEEEEEE
T ss_pred EEEEEEeeEEECC-CCCEEEEEEEEEEEEec
Confidence 9999999999999 99999999999998764
No 11
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=99.96 E-value=7.1e-29 Score=199.11 Aligned_cols=108 Identities=21% Similarity=0.335 Sum_probs=82.9
Q ss_pred ccccccccEEEEEEEeCCCceEEEecCCeEEEEEEEEECC-ceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCC
Q 029355 78 GWGFRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGG-LFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKN 156 (194)
Q Consensus 78 ~~~m~~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~-~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KG 156 (194)
-|-|..||+|+|+|+|++||++|++++|.++++|+||+++ .|+++ +|++ . .++||+|++||+ +|+.+.++|+||
T Consensus 10 ~~~~~~~N~V~LiGrL~~DPelr~t~~G~~va~f~lAv~~r~~~~~-~Ge~--~-~t~~~~v~~wg~-~Ae~~~~~l~KG 84 (153)
T 1z9f_A 10 HHHMSFFNKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNA-PDDA--Q-TTDFFRIVTFGR-LAEFARTYLTKG 84 (153)
T ss_dssp --CCSCCCCEEEEEEESSCCEEEECC--CEEEEEEEEEEC---------------CEEEEEEEEEHH-HHHHHHHHCCTT
T ss_pred cccccceeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCccccC-CCCE--e-eeEEEEEEEECH-HHHHHHhhCCCC
Confidence 3568999999999999999999999999999999999999 88876 4875 2 399999999999 999999999999
Q ss_pred CeEEEEEEeEEeeeecCCCCeEEEEEEEEEEecCe
Q 029355 157 SSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGN 191 (194)
Q Consensus 157 s~V~VeGrL~tr~y~d~~dG~~r~~~EI~v~~~G~ 191 (194)
++|+|+|+|+++.|+|+ ||++++.++|+|+....
T Consensus 85 ~~V~VeGrL~~~~~~dk-dG~~r~~~eV~a~~i~~ 118 (153)
T 1z9f_A 85 RLVLVEGEMRMRRWETP-TGEKRVSPEVVANVVRF 118 (153)
T ss_dssp CEEEEEEEEEEEC--------CCCEEEEEEEEEEE
T ss_pred CEEEEEEEEEeceEECC-CCCEEEEEEEEEEEEEE
Confidence 99999999999999999 99999999999996543
No 12
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=99.96 E-value=1.9e-28 Score=192.31 Aligned_cols=102 Identities=21% Similarity=0.274 Sum_probs=96.0
Q ss_pred cccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeEEEE
Q 029355 83 GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVE 162 (194)
Q Consensus 83 ~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V~Ve 162 (194)
+||+|+|+|+|++||++|++++|.+++.|+||++++|++++ |++ .+.++||+|++|++ +|+.++++|+||++|+|+
T Consensus 1 mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~-G~~--~~~t~~~~v~~wg~-~Ae~~~~~l~KG~~V~V~ 76 (134)
T 2vw9_A 1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQD-GTL--GEEVCFIDARLFGR-TAEIANQYLSKGSSVLIE 76 (134)
T ss_dssp CCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEEECSS-SCE--EEEEEEEEEEEEHH-HHHHHHHHCCTTCEEEEE
T ss_pred CeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEeCCeECCC-CCC--ccccEEEEEEEEcH-HHHHHHHhCCCCCEEEEE
Confidence 48999999999999999999999999999999999998874 877 35899999999999 999999999999999999
Q ss_pred EEeEEeeeecCCCCeEEEEEEEEEEec
Q 029355 163 GDIEIRVYNDSINGEVKNIPEICIRRD 189 (194)
Q Consensus 163 GrL~tr~y~d~~dG~~r~~~EI~v~~~ 189 (194)
|+|+++.|+|+ ||++++.++|.|+..
T Consensus 77 G~L~~~~~~dk-dG~~r~~~ev~a~~i 102 (134)
T 2vw9_A 77 GRLTYESWMDQ-TGKKNSRHTITADSL 102 (134)
T ss_dssp EEEEEEEEECT-TSCEEEEEEEEEEEE
T ss_pred EEEEeeeEECC-CCCEEEEEEEEEEEE
Confidence 99999999999 999999999999854
No 13
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=99.96 E-value=4.3e-29 Score=204.77 Aligned_cols=110 Identities=26% Similarity=0.526 Sum_probs=99.0
Q ss_pred cccccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeEE
Q 029355 81 FRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVY 160 (194)
Q Consensus 81 m~~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V~ 160 (194)
|++||+|+|+|+|++||++|++++|.++++|+||+++.|.++++|++ .+.++||+|++|++ +|+.+.++|+||++|+
T Consensus 3 ~~~~N~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~~~~~d~~~Ge~--~~~t~~i~vv~wg~-~Ae~~~~~l~KG~~V~ 79 (178)
T 1eqq_A 3 SRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEM--KEQTEWHRVVLFGK-LAEVASEYLRKGSQVY 79 (178)
T ss_dssp CCCEEEEEEEEEESSSCCCCEETTTEECCCCEEEEEECCCCSSSSSC--CCEEEEEEEEECHH-HHHHHHHHCCTTCEEE
T ss_pred ccCeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCeecCCCCce--ecccEEEEEEEccH-HHHHHHHhcCCCCEEE
Confidence 46899999999999999999999999999999999999987766887 46899999999999 9999999999999999
Q ss_pred EEEEeEEeeeecCCCCeEEEEEEEEEEecCeeeC
Q 029355 161 VEGDIEIRVYNDSINGEVKNIPEICIRRDGNSYY 194 (194)
Q Consensus 161 VeGrL~tr~y~d~~dG~~r~~~EI~v~~~G~~~f 194 (194)
|+|+|+++.|+|+ ||++++.+||.|..+.+|.|
T Consensus 80 VeGrL~~r~~~dk-dG~~r~~~eI~v~va~~i~~ 112 (178)
T 1eqq_A 80 IEGQLRTRKWTDQ-SGQDRYTTEVVVNVGGTMQM 112 (178)
T ss_dssp ECCEEEEEEEECS-SSEEEEEEEEECSSSCCEEC
T ss_pred EEEEEEeeeEECC-CCCEEEEEEEeeeecCeEEE
Confidence 9999999999999 99999999995522334443
No 14
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=99.96 E-value=3.1e-28 Score=185.95 Aligned_cols=100 Identities=16% Similarity=0.252 Sum_probs=90.2
Q ss_pred cccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeEEEE
Q 029355 83 GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVE 162 (194)
Q Consensus 83 ~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V~Ve 162 (194)
.||+|+|+|+|++||+++++++|.+++.|+||+++.|+++ +|+ ..++||+|++||+ +|+.+.++|+||++|+|+
T Consensus 4 mmN~v~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~-~g~----~~t~~~~v~~wg~-~Ae~~~~~l~KG~~V~V~ 77 (116)
T 3vdy_A 4 MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNA-SGE----IEADYVNCTLWRK-TAENTALYCQKGSLVGVS 77 (116)
T ss_dssp CCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEECSSCCS-SSC----CCEEEEEEEEEHH-HHHHHHHHCCTTCEEEEE
T ss_pred eEeEEEEEEEEccCcEEEECCCCCEEEEEEEEEeccccCC-CCc----cccEEEEEEEECH-HHHHHHHhCCCCCEEEEE
Confidence 5899999999999999999999999999999999988766 475 3799999999999 999999999999999999
Q ss_pred EEeEEeeeecCCCCeEEEEEEEEEEec
Q 029355 163 GDIEIRVYNDSINGEVKNIPEICIRRD 189 (194)
Q Consensus 163 GrL~tr~y~d~~dG~~r~~~EI~v~~~ 189 (194)
|+|+++.|+|+ ||++++.++|.|+..
T Consensus 78 G~l~~~~~~d~-dG~~~~~~ev~a~~i 103 (116)
T 3vdy_A 78 GRIQTRSYENE-EGVNVYVTEVLADTV 103 (116)
T ss_dssp EEEEEEEEC-----CCEEEEEEEEEEE
T ss_pred EEEEeeEEECC-CCCEEEEEEEEEEEE
Confidence 99999999999 999999999999954
No 15
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=99.95 E-value=1.4e-28 Score=196.80 Aligned_cols=101 Identities=15% Similarity=0.145 Sum_probs=80.7
Q ss_pred cccccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchH-HHHHHhcCCCCCeE
Q 029355 81 FRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEIL-GSYAVKQLVKNSSV 159 (194)
Q Consensus 81 m~~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~l-Ae~v~~~L~KGs~V 159 (194)
|++||+|+|+|+|++||+ +++ +|.++++|+||++++|.++ +|++. +..++||+|++|++ + |++++++|+||++|
T Consensus 3 ~~~~NkV~LiGrLg~DPe-r~t-~G~~va~FslAv~~~~~~~-~Ge~~-~~~t~w~~vv~wgk-~lAe~~~~yl~KG~~V 77 (148)
T 3k7u_C 3 SKSVNSVTLVGVVHDIQS-GFV-YEDAVTQFTLTTTSIDTTH-PTQEV-VVEKDHHTIRCFGE-LFSAEVKQKVKEGNVV 77 (148)
T ss_dssp --CCCCEEEEEEEEEEEE-EES-SSSEEEEEEEEEECC-------------CEEEEEEEEESH-HHHHHHHHHCCTTCEE
T ss_pred cccCcEEEEEEEeccCCE-eee-CCcEEEEEEEEECCceecC-CCCEE-ccccEEEEEEEECc-HHHHHHHhhCCCCCEE
Confidence 468999999999999999 999 9999999999999998776 47631 57899999999999 7 99999999999999
Q ss_pred EEEEEeEEeeeecCCCCeEEEEEEEEEE
Q 029355 160 YVEGDIEIRVYNDSINGEVKNIPEICIR 187 (194)
Q Consensus 160 ~VeGrL~tr~y~d~~dG~~r~~~EI~v~ 187 (194)
+|+|+|+++.|+|+ ||++++.+||++-
T Consensus 78 ~VeGrL~~r~~~dk-dG~kr~~teVi~v 104 (148)
T 3k7u_C 78 CVNGRLRLSPQLEP-SCNKHFYFPYIQV 104 (148)
T ss_dssp EEEEEEEECCCSCC-C-----CCEEEEE
T ss_pred EEEEEEEeeeeECC-CCCEEEEEEEEEE
Confidence 99999999999999 9999999999875
No 16
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=99.94 E-value=2.3e-27 Score=192.47 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=83.0
Q ss_pred ccccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchH-HHHHHhcCCCCCeEE
Q 029355 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEIL-GSYAVKQLVKNSSVY 160 (194)
Q Consensus 82 ~~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~l-Ae~v~~~L~KGs~V~ 160 (194)
++||+|+|+|+|++||++|+++ .+|++|+||++++|.++++|++ .+.++||+|++||+ + ||.+.++|+||++|+
T Consensus 20 ~smNkViLiGrLg~DPElR~t~--~~Va~fsLAt~~r~~~~~~ge~--~~~Tdw~~Vv~wgk-~lAE~~~~yL~KGs~V~ 94 (164)
T 3k81_C 20 KSVNSVTLVGVVHDIQSGFVYE--DAVTQFTLTTTSIDTTHPTQEV--VVEKDHHTIRCFGE-LFSAEVKQKVKEGNVVC 94 (164)
T ss_dssp CCEEEEEEEEEEECCCCEESSS--CEECCEEEEECCC--------C--CCCCEEEEEEECCH-HHHHHHHHHCCTTCEEE
T ss_pred cCCcEEEEEEEeccCCEEEEcC--ccEEEEEEEEcCceeeCCCCcC--ccceEEEEEEEECC-HHHHHHHhhcCCCCEEE
Confidence 5799999999999999999998 8999999999987766656775 57899999999999 8 999999999999999
Q ss_pred EEEEeEEeeeecCCCCeEEE-EEEEEEE
Q 029355 161 VEGDIEIRVYNDSINGEVKN-IPEICIR 187 (194)
Q Consensus 161 VeGrL~tr~y~d~~dG~~r~-~~EI~v~ 187 (194)
|+|+|+++.|+|+ +|++++ ..+|.|.
T Consensus 95 VeGrL~tr~w~D~-~g~k~~~~~~i~V~ 121 (164)
T 3k81_C 95 VNGRLRLSPQLEP-SCNKHFYFPYIQVQ 121 (164)
T ss_dssp ECCEEEEECCCCS-SCSCCCCEEEEEEC
T ss_pred EEEEEEeeeEEcC-CCCEEEEEEEEEEe
Confidence 9999999999999 886655 4555554
No 17
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.93 E-value=4.9e-26 Score=196.20 Aligned_cols=132 Identities=11% Similarity=0.037 Sum_probs=102.8
Q ss_pred CCCCCCccccccccccccccccc-CCCCCCCCccccccccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCC
Q 029355 47 DDQNMDEVDDVFDDFVVEKQELQ-PQGVDPRRGWGFRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVG 125 (194)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~m~~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~G 125 (194)
++.+.-.+|..++.......... -+...+ +-.|+++|+|+|+|+| +||++|+++ |.++++|+||+++.|.+++.+
T Consensus 110 dG~kr~~~evva~~v~~~~G~~~~v~~~~g--~~~M~~lNkV~LiGrL-~DPElR~t~-G~~Va~FslAv~~~~~~~~~~ 185 (257)
T 4dni_A 110 DGSMRKYYHYPVIQVHPGCGSVLKVKLASG--AGHMKSVNSVTLVGVV-HDIQSGFVY-EDAVTQFTLTTTSIDTTHPTQ 185 (257)
T ss_dssp CSSSSSEEEEEEEEECTTTCEEEEGGGSCS--SCTTSCEEEEEEEEEE-EEEEEEEET-TEEEEEEEEEEEEEECCCTTC
T ss_pred CCCcEEEEEEEEEEEEecCCcceeeecccc--cccccccCEEEEEEEc-CCCEEEEeC-CcEEEEEEEEECCCccCCCCc
Confidence 34555566666666554222210 011111 2238999999999999 999999999 999999999999999876433
Q ss_pred cccCCCCceEEEEEEeCchH--HHHHHhcCCCCCeEEEEEEeEEeeeecCCCCeEEEEEEEEEE
Q 029355 126 SKDLPKPVQWHRIAVHNEIL--GSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIR 187 (194)
Q Consensus 126 e~~~~~~t~w~~V~~wg~~l--Ae~v~~~L~KGs~V~VeGrL~tr~y~d~~dG~~r~~~EI~v~ 187 (194)
+. +..++||+|++|++ + || ++++|+||++|+|+|+|+++.|+|+ +|++++.++++.-
T Consensus 186 e~--~~~Tdw~~Vv~wgk-~~~AE-i~~~L~KG~~V~VeGrL~tr~~~D~-~G~kr~~~~vI~V 244 (257)
T 4dni_A 186 EV--VVEKDHHTIRCFGE-LFSAE-VKQKVKEGNVVCVNGRLRLSPQLEP-SCNKHFYFPYIQV 244 (257)
T ss_dssp SC--EEEEEEEEEEEESH-HHHHH-HHHHCCTTCEEEEEEEEEEEEEECS-SSSCEEEEEEEEE
T ss_pred eE--ccceEEEEEEEECC-ccHHH-HHhhCCCCCEEEEEEEEEeeeEEcC-CCCEEEEEEEEEE
Confidence 32 35899999999999 8 99 8889999999999999999999999 9999888775544
No 18
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.93 E-value=2.3e-25 Score=195.53 Aligned_cols=102 Identities=19% Similarity=0.291 Sum_probs=86.2
Q ss_pred cccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhc-CCCCCeEEE
Q 029355 83 GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQ-LVKNSSVYV 161 (194)
Q Consensus 83 ~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~-L~KGs~V~V 161 (194)
+||+|+|+|+|++||++|++++|.++++|+||+++.|+++ +|++ .+.++||+|++|++ +|+.+.++ |+||++|+|
T Consensus 4 ~mN~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~r~~~~~-~G~~--~~~t~~i~vv~~g~-~Ae~~~~~~l~KG~~V~V 79 (301)
T 1se8_A 4 GMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGN-DGRE--RNLPWYHRVSILGK-PAEWQAERNLKGGDAVVV 79 (301)
T ss_dssp CEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC----------CEEEEEEEEEEESH-HHHHHHHTCCCTTCEEEE
T ss_pred ceeEEEEEEEECCCceEEECCCCCEEEEEEEEEcCceECC-CCCE--ecceEEEEEEEEcH-HHHHHHhhCCCCCCEEEE
Confidence 7999999999999999999999999999999999999876 4876 45799999999999 99999999 999999999
Q ss_pred EEEeEEeeeecCCCCeEEEEEEEEEEec
Q 029355 162 EGDIEIRVYNDSINGEVKNIPEICIRRD 189 (194)
Q Consensus 162 eGrL~tr~y~d~~dG~~r~~~EI~v~~~ 189 (194)
+|+|+++.|+|+ ||++++.++|.|+..
T Consensus 80 eG~L~~r~~~dk-dG~~r~~~ev~a~~i 106 (301)
T 1se8_A 80 EGTLEYRQWEAP-EGGKRSAVNVKALRM 106 (301)
T ss_dssp EEEEEEEEEC------CEEEEEEEEEEE
T ss_pred EEEEEeeeEECC-CCCEEEEEEEEEeEE
Confidence 999999999999 999999999999853
No 19
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.92 E-value=4.1e-25 Score=189.79 Aligned_cols=109 Identities=18% Similarity=0.265 Sum_probs=88.7
Q ss_pred CCCCCCcccc-ccccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHH
Q 029355 72 GVDPRRGWGF-RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAV 150 (194)
Q Consensus 72 ~~~~~~~~~m-~~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~ 150 (194)
..|+..+-.| ++||+|+|+|+|++||++|++++|.++++|+||++++|+ |++ ...++||+|++|++ +|+.++
T Consensus 115 ~~d~~g~~~m~~~~N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~----g~~--~~~t~~~~v~~wg~-~Ae~~~ 187 (264)
T 2fxq_A 115 LEDARGQPRLRRALNQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRR----GQE--EERTHFLEVQAWRE-LAEWAS 187 (264)
T ss_dssp ----------CCCCEEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------------EEEEEEEEEHH-HHHHHT
T ss_pred ccccccccccccceEEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcC----CCC--ccccEEEEEEEECh-HHHHhh
Confidence 3455555455 489999999999999999999999999999999999876 444 35799999999999 999999
Q ss_pred hcCCCCCeEEEEEEeEEeeeecCCCCeEEEEEEEEEEec
Q 029355 151 KQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRD 189 (194)
Q Consensus 151 ~~L~KGs~V~VeGrL~tr~y~d~~dG~~r~~~EI~v~~~ 189 (194)
+|+||++|+|+|+|+++.|+|+ ||++++.++|.|+..
T Consensus 188 -~l~KG~~V~V~G~l~~~~~~~~-dG~~~~~~ev~a~~i 224 (264)
T 2fxq_A 188 -ELRKGDGLLVIGRLVNDSWTSS-SGERRFQTRVEALRL 224 (264)
T ss_dssp -TCCTTCEEEEEEEEEEEEEECT-TSCEEEEEEEEEEEE
T ss_pred -hcCCCCEEEEEEEEEeeEEECC-CCCEEEEEEEEEEEE
Confidence 9999999999999999999999 999999999999954
No 20
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=99.92 E-value=2.9e-25 Score=174.96 Aligned_cols=97 Identities=15% Similarity=0.166 Sum_probs=83.7
Q ss_pred cccccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeEE
Q 029355 81 FRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVY 160 (194)
Q Consensus 81 m~~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V~ 160 (194)
|..||+|+|+|+|++||++|+|++|.++++|+||++ +|.++ +|+. .+.++||+|++||+ +||.+.++|+||++|+
T Consensus 16 m~M~NkViLiGrL~~DPElRyTpsG~~Va~ftLA~~-~~~~~-~G~~--~~~~~~i~vv~wGk-~AE~~~~yl~KGs~V~ 90 (134)
T 1v1q_A 16 SLMTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHR-SVQEE-AGFH--RQAWCQMPVIVSGH-ENQAITHSITVGSRIT 90 (134)
T ss_dssp GGCCEEEEEEEEEEEEEEEEECTTCCEEEEEEEEEE-EEEEE-TTEE--EEEEEEEEEEEEST-GGGGGGTTCCTTCEEE
T ss_pred CcceeEEEEEEEECcCCceEECCCCCEEEEEEEEEe-CcCcC-CCCE--ecceEEEEEEEEhH-HHHHHHHhcCCCCEEE
Confidence 333499999999999999999999999999999996 46654 4765 35678999999999 9999999999999999
Q ss_pred EEEEeEEeeeecCCCCeEEEEEEEEEE
Q 029355 161 VEGDIEIRVYNDSINGEVKNIPEICIR 187 (194)
Q Consensus 161 VeGrL~tr~y~d~~dG~~r~~~EI~v~ 187 (194)
|+|+|+++. ++ ||++++.+ .++
T Consensus 91 VeGrL~tr~--~k-~G~kr~~~--~a~ 112 (134)
T 1v1q_A 91 VQGFISCHK--AK-NGLSKMVL--HAE 112 (134)
T ss_dssp EEEEEEEEC--TT-TTSCEEEE--EEE
T ss_pred EEEEEEEEE--CC-CCCEEEEE--EEE
Confidence 999999984 67 89988865 455
No 21
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.92 E-value=2.9e-25 Score=190.72 Aligned_cols=101 Identities=18% Similarity=0.313 Sum_probs=86.3
Q ss_pred cccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeEEEE
Q 029355 83 GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVE 162 (194)
Q Consensus 83 ~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V~Ve 162 (194)
+||+|+|+|+|++||++|++++|.++++|+||+++.|.++ +|++ ...++||+|++||+ +|+.+.++|+||++|+|+
T Consensus 4 ~~N~v~L~G~l~~dpelr~t~~G~~v~~f~lA~~~~~~~~-~G~~--~~~t~~~~v~~~g~-~Ae~~~~~l~KG~~V~V~ 79 (264)
T 2fxq_A 4 GLNQVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDE-SGQE--REVPWYHRVRLLGR-QAEMWGDLLEKGQLIFVE 79 (264)
T ss_dssp CEEEEEEEEEESSCCCCEECTTCCEEEEEEEEEEEEEECT-TSCE--EEEEEEEEEEEETH-HHHHHTTTCCTTCEEEEE
T ss_pred ceeEEEEEEEeccCCeEEECCCCCEEEEEEEEECCcEECC-CCCE--ecccEEEEEEEEch-HHHHHHHhCCCCCEEEEE
Confidence 6999999999999999999999999999999999999876 4876 35799999999999 999999999999999999
Q ss_pred EEeEEeeeecCCCCeEEEEEEEEEEec
Q 029355 163 GDIEIRVYNDSINGEVKNIPEICIRRD 189 (194)
Q Consensus 163 GrL~tr~y~d~~dG~~r~~~EI~v~~~ 189 (194)
|+|+++.|+| ||++++.++|.|+..
T Consensus 80 G~L~~~~~~~--dG~~r~~~ev~a~~i 104 (264)
T 2fxq_A 80 GRLEYRQWEK--DGEKKSEVQVRAEFI 104 (264)
T ss_dssp EEEEEC-----------CCEEEEEEEE
T ss_pred EEEEeeeEEe--CCEEEEEEEEEEEEE
Confidence 9999999997 899999999999954
No 22
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.92 E-value=8.1e-25 Score=192.03 Aligned_cols=112 Identities=18% Similarity=0.323 Sum_probs=96.5
Q ss_pred CCCCCccccc-cccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHh
Q 029355 73 VDPRRGWGFR-GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVK 151 (194)
Q Consensus 73 ~~~~~~~~m~-~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~ 151 (194)
.|+.-+..|. +||+|+|+|+|++||++|++++|.+++.|+||+++.|.+++ |++ ...++||+|++|++ +|+.+.+
T Consensus 117 ~d~~gg~rm~~mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~-Ge~--~~~t~~i~vvawg~-~Ae~~~~ 192 (301)
T 1se8_A 117 QDAGGGVRMSGAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQ-GQR--QEKVHYIDATLWRD-LAENMKE 192 (301)
T ss_dssp ECTTSCEEEETCEEEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTT-SCE--EEEEEEEEEEEETH-HHHHHTT
T ss_pred cccccccchhcceeEEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCC-CCc--ccccEEEEEEECCH-HHHHHHh
Confidence 4566677775 79999999999999999999999999999999999998774 877 35799999999999 9999999
Q ss_pred cCCCCCeEEEEEEeEEeeeecCCCCeEEEEEEEEEEecC
Q 029355 152 QLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDG 190 (194)
Q Consensus 152 ~L~KGs~V~VeGrL~tr~y~d~~dG~~r~~~EI~v~~~G 190 (194)
|+||++|+|+|+|+++.|+|+ ||++++.++|.|+...
T Consensus 193 -l~KG~~V~V~GrL~~~~y~dk-dG~~r~~~ev~a~~i~ 229 (301)
T 1se8_A 193 -LRKGDPVMIMGRLVNEGWTDK-DGNKRNSTRVEATRVE 229 (301)
T ss_dssp -CCTTCEEEEEEEEEEEECC-------CEEEEEEEEEEE
T ss_pred -cCCCCEEEEEEEEeeeeEECC-CCcEEEEEEEEEEEEE
Confidence 999999999999999999999 9999999999999543
No 23
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=99.91 E-value=2.4e-24 Score=162.00 Aligned_cols=95 Identities=16% Similarity=0.210 Sum_probs=73.3
Q ss_pred ccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeEEEEE
Q 029355 84 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVEG 163 (194)
Q Consensus 84 mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V~VeG 163 (194)
||+|+|+|+|++||++|++++|.++++|+||++ .+..+ ++ |+ .....||+|++||+ +|+.+.++|+||++|+|+|
T Consensus 2 ~N~v~L~G~l~~dpelR~t~~G~~v~~f~lA~~-~~~~~-~~-~~-r~~~~~~~vv~~g~-~Ae~~~~~l~KG~~V~V~G 76 (104)
T 1txy_A 2 TNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHR-SVQEE-AG-FH-RQAWCQMPVIVSGH-ENQAITHSITVGSRITVQG 76 (104)
T ss_dssp CEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEE-EEEEE-TT-EE-EEEEEEEEEEEESS-TTHHHHTTCCTTCEEEEEE
T ss_pred cEEEEEEEEECCCceEEECCCCCEEEEEEEEEe-Ccccc-CC-ce-eceeEEEEEEEEhH-HHHHHHhhCCCCCEEEEEE
Confidence 799999999999999999999999999999995 23221 12 11 22334499999999 9999999999999999999
Q ss_pred EeEEeeeecCCCCeEEEEEEEEEEe
Q 029355 164 DIEIRVYNDSINGEVKNIPEICIRR 188 (194)
Q Consensus 164 rL~tr~y~d~~dG~~r~~~EI~v~~ 188 (194)
+|+++ +|+ ||+++ ++|.|+.
T Consensus 77 ~L~~~--~~~-~G~~r--~~v~~~~ 96 (104)
T 1txy_A 77 FISCH--KAK-NGLSK--MVLHAEQ 96 (104)
T ss_dssp EEEC-----------C--CEEEEEE
T ss_pred EEEec--cCC-CCCEE--EEEEEEE
Confidence 99999 677 99887 8998884
No 24
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=99.90 E-value=6.5e-24 Score=161.49 Aligned_cols=90 Identities=19% Similarity=0.148 Sum_probs=74.7
Q ss_pred ccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeEEEEE
Q 029355 84 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVEG 163 (194)
Q Consensus 84 mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V~VeG 163 (194)
-|+|+|+|+|++||+++++++|.++++|+||+++.+ ..+||++|++|++ +|+.+. +.||++|+|+|
T Consensus 11 ~N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~-----------~~~Dfi~ivvw~k-lAe~~~--~~kG~~v~v~G 76 (107)
T 4gs3_A 11 NNTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLS-----------ETKDYLPITISNR-LFEGMN--LEVGTRVKIEG 76 (107)
T ss_dssp CSCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTT-----------SCEEEEEEEEEGG-GSTTCC--CCTTCEEEEEE
T ss_pred CCEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCC-----------CCCcEEEEEEEhH-HhhHHh--hcCCCEEEEEE
Confidence 399999999999999999999999999999998742 3589999999999 999875 55999999999
Q ss_pred EeEE-eeeecCCCCeEEEEEEEEEEe
Q 029355 164 DIEI-RVYNDSINGEVKNIPEICIRR 188 (194)
Q Consensus 164 rL~t-r~y~d~~dG~~r~~~EI~v~~ 188 (194)
+|++ +.|.++ ||++++.+||.|+.
T Consensus 77 ~lrsy~~~~~~-dG~~R~v~eV~a~~ 101 (107)
T 4gs3_A 77 QLRSYNRKSPE-EGKNKLILTVFARD 101 (107)
T ss_dssp EEEEEECC---------EEEEEEEEE
T ss_pred EEEecceEECC-CCCEEEEEEEEEEE
Confidence 9996 889998 99999999999994
No 25
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=99.89 E-value=2.1e-23 Score=157.44 Aligned_cols=97 Identities=8% Similarity=-0.036 Sum_probs=77.7
Q ss_pred ccccccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeE
Q 029355 80 GFRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSV 159 (194)
Q Consensus 80 ~m~~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V 159 (194)
.|..+|+|+|+|+|++||++|+|++|.++++|+||+++.+. + +|+. .+.+.||+|++||+ +|| +.+ |+||++|
T Consensus 3 ~m~m~Nkv~LiG~L~~dPelRytp~G~~v~~f~lA~~~~~~-~-~g~~--~~~~~~i~vv~~gk-~Ae-~~~-l~KG~~v 75 (103)
T 3k8a_A 3 HMGFTNLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQE-E-NGQQ--CLVQLEIPARILGR-QAE-EWQ-YRQGDCA 75 (103)
T ss_dssp -CCCCEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEE-E-TTEE--EEEEEEEEEEEEHH-HHH-HST-TCTTCEE
T ss_pred ccccccEEEEEEEECCCCceEECCCCCEEEEEEEEEcccCc-c-CCCE--EEeeEEEEEEEEhH-Hhh-hhc-cCCCCEE
Confidence 35534999999999999999999999999999999987665 3 4665 23444599999999 999 665 9999999
Q ss_pred EEEEEeEEeeeecCCCCeEEEEEEEE
Q 029355 160 YVEGDIEIRVYNDSINGEVKNIPEIC 185 (194)
Q Consensus 160 ~VeGrL~tr~y~d~~dG~~r~~~EI~ 185 (194)
+|+|+|++++|... .....+.+|.
T Consensus 76 ~veGrL~~rs~~~~--~lvlhi~~i~ 99 (103)
T 3k8a_A 76 TVEGFLAQKSRRSL--MPMLRIQNIK 99 (103)
T ss_dssp EEEEEEEESSSSCC--CEEEEEEEEE
T ss_pred EEEEEEEECccCCc--cEEEEEEEEE
Confidence 99999999999543 4444444443
No 26
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=99.88 E-value=1.2e-22 Score=156.32 Aligned_cols=92 Identities=7% Similarity=0.003 Sum_probs=77.1
Q ss_pred ccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeEEEEE
Q 029355 84 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVEG 163 (194)
Q Consensus 84 mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V~VeG 163 (194)
||+|+|+|+|++||++|||++|.++++|+||+++ +.++ .|.. .+...|++|++||+ +||.+ ++|+||++|+|+|
T Consensus 1 MNkviL~GrL~~dPelRyTpsG~~V~~f~LA~~~-~~~~-~g~~--r~~~~~i~vv~~Gk-~AE~~-~~l~kGs~V~VeG 74 (115)
T 3fhw_A 1 MNTLELSARVLECGAMRHTPAGLPALELLLVHES-EVVE-AGHP--RRVELTISAVALGD-LALLL-ADTPLGTEMQVQG 74 (115)
T ss_dssp CEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEE-ECCC-CC----CEEEEEEEEEEETH-HHHHH-TTCCTTCEEEEEE
T ss_pred CCEEEEEEEECcCcceEECCCCCEEEEEEEEEcc-eeec-CCCe--eeeeEEEEEEEEhH-HHHhh-hccCCCCEEEEEE
Confidence 7999999999999999999999999999999965 4443 3543 34455699999999 99997 9999999999999
Q ss_pred EeEEeeeecCCCCeEEEEEEEEEEe
Q 029355 164 DIEIRVYNDSINGEVKNIPEICIRR 188 (194)
Q Consensus 164 rL~tr~y~d~~dG~~r~~~EI~v~~ 188 (194)
+|++++ + +| +.++|.|++
T Consensus 75 rL~trs---~-~G---~kl~l~a~~ 92 (115)
T 3fhw_A 75 FLAPAR---K-DS---VKVKLHLQQ 92 (115)
T ss_dssp EEEESS---T-TC---SSEEEEEEE
T ss_pred EEEECC---C-CC---CEEEEEEEE
Confidence 999995 5 77 457777774
No 27
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=99.86 E-value=6.3e-22 Score=149.11 Aligned_cols=84 Identities=6% Similarity=0.025 Sum_probs=68.9
Q ss_pred ccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeEEEEE
Q 029355 84 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVEG 163 (194)
Q Consensus 84 mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V~VeG 163 (194)
||+|+|+|+|++||++|||++|.+++.|+||+++.+.+ + |.. .+...|++|++||+ +||.+.+ +.||++|.|+|
T Consensus 2 MN~v~L~GrLt~dPelRyTpsG~~V~~f~LA~~s~~~e-~-g~~--r~~~f~i~vv~wGk-~AE~~~~-~~kGs~V~VeG 75 (101)
T 3en2_A 2 INRLQLVATLVEREVMRYTPAGVPIVNCLLSYSGQAME-A-QAA--RQVEFSIEALGAGK-MASVLDR-IAPGTVLECVG 75 (101)
T ss_dssp CCCEEEEEEEEEECCCEECTTCCEEEEEEEEEEEEEEC-C---E--EEEEEEEEEEEETH-HHHHHTT-SCTTCEEEEEE
T ss_pred cCEEEEEEEECcCccEEECCCCCEEEEEEEEEcceEec-C-CCc--EeeeEEEEEEEEhH-HHHHHhh-cCCCCEEEEEE
Confidence 89999999999999999999999999999999875543 2 433 23445599999999 9999886 78999999999
Q ss_pred EeEEeeeecC
Q 029355 164 DIEIRVYNDS 173 (194)
Q Consensus 164 rL~tr~y~d~ 173 (194)
+|++++|..+
T Consensus 76 rL~trs~~s~ 85 (101)
T 3en2_A 76 FLARKHRSSK 85 (101)
T ss_dssp EEEECC----
T ss_pred EEEeCcCCCC
Confidence 9999999765
No 28
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=99.83 E-value=6.4e-20 Score=146.33 Aligned_cols=96 Identities=17% Similarity=0.121 Sum_probs=84.7
Q ss_pred ccccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeEEE
Q 029355 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYV 161 (194)
Q Consensus 82 ~~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V~V 161 (194)
+.+|+|+|+|+|+ ||+.+++ .+.+++.|+|||+..+.. +|+ ..++||+|.+||..+||.+.++++||++|+|
T Consensus 42 r~vN~VvLmGRvt-dpq~ry~-~~~~Va~FtLAV~~~~~r--~ge----~~tdf~~V~vfGg~lAE~i~~ylkkG~rVlV 113 (148)
T 3stb_C 42 RCVNHCVMLGVVQ-NIQEGFV-FEDKVLQFTLITDFEGPS--PGD----PDKDFHTVRVFDSDYSSRVKEQLRDGEWFLV 113 (148)
T ss_dssp SCSEEEEEEEEEE-EEEEEEE-TTEEEEEEEEEEECSSCC--TTS----CSEEEEEEEECSHHHHHHHHHHCCTTCEEEE
T ss_pred eecceEEEEEEec-Ccccccc-CCCcEEEEEEEEecCCCC--CCC----CccceEEEEEECChHHHHHHHHhcCCCEEEE
Confidence 7899999999996 8899999 488999999999987643 343 4799999999984499999999999999999
Q ss_pred EEEeEEeeeecCCCCeEEEEEEEEE
Q 029355 162 EGDIEIRVYNDSINGEVKNIPEICI 186 (194)
Q Consensus 162 eGrL~tr~y~d~~dG~~r~~~EI~v 186 (194)
+|||+++.|.|+ +|++.|...++.
T Consensus 114 eGRLrmn~~~d~-~gkk~Y~~p~i~ 137 (148)
T 3stb_C 114 TGRLRMVPQYDG-SMRKYYHYPVIQ 137 (148)
T ss_dssp EEEEEEEEEEET-TTTEEEEEEEEE
T ss_pred EEEEEcceeECC-CCCEEeeccEEE
Confidence 999999999999 999998776654
No 29
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.81 E-value=7.8e-20 Score=157.54 Aligned_cols=95 Identities=18% Similarity=0.245 Sum_probs=83.6
Q ss_pred ccccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeC-chHHHHHHhcCCCCCeEE
Q 029355 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHN-EILGSYAVKQLVKNSSVY 160 (194)
Q Consensus 82 ~~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg-~~lAe~v~~~L~KGs~V~ 160 (194)
++||+|+|+|+|++| ++|||++|. ++.|++++...+.. .|+ ..++|+.|++|| + +||.+.++|+||++|+
T Consensus 28 r~~N~viLiGrLtrd-ElRyT~~g~-~a~~~lav~~~~~~--~ge----~~~df~~vv~wg~k-~AE~~~~yl~kG~~V~ 98 (257)
T 4dni_A 28 RCVNHCVMLGVVQNI-QEGFVFEDK-VLQFTLITDFEGPS--PGD----PDKDFHTVRVFDSD-YSSRVKEQLRDGEWFL 98 (257)
T ss_dssp CCSEEEEEEEEEEEE-EEEEETTEE-EEEEEEEEECCCCC--SSC----CCEEEEEEEECSHH-HHHHHHHHCCTTCEEE
T ss_pred hcCcEEEEEEEEece-EEEECCCCC-EEEEEEEEEecCCC--CCC----CcccEEEEEEECCH-HHHHHHHhccCCCEEE
Confidence 789999999999999 999999984 66777777766542 353 467888999999 7 9999999999999999
Q ss_pred EEEEeEEeeeecCCCCeEEEEEEEEEEe
Q 029355 161 VEGDIEIRVYNDSINGEVKNIPEICIRR 188 (194)
Q Consensus 161 VeGrL~tr~y~d~~dG~~r~~~EI~v~~ 188 (194)
|+|+|++ |+++ ||++++.+||.+++
T Consensus 99 VeGrL~~--~~~~-dG~kr~~~evva~~ 123 (257)
T 4dni_A 99 VTGRLRM--VPQY-DGSMRKYYHYPVIQ 123 (257)
T ss_dssp EEEEEEE--EEEE-CSSSSSEEEEEEEE
T ss_pred EEEEEEE--eECC-CCCcEEEEEEEEEE
Confidence 9999999 8888 99999999999995
No 30
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=97.41 E-value=0.0028 Score=47.42 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=51.5
Q ss_pred EEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHH--HHHHhcCCCCCeEEEEE
Q 029355 86 KAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILG--SYAVKQLVKNSSVYVEG 163 (194)
Q Consensus 86 kV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lA--e~v~~~L~KGs~V~VeG 163 (194)
.+.|+|+|.. .+.- +-....++.|+|.++.. . ....++|.|-++|. .+ +.+.+.|+-|+.|.|.|
T Consensus 5 n~vlvG~V~D-VQ~G-fl~~~~V~Qftl~~d~e--------~--~~eke~~tVRC~Gd-~~~~~~lk~~lk~g~~v~V~G 71 (105)
T 4dka_C 5 NALMIGRIAD-VQHG-FLGAMTVTQYVLEVDGG--------A--SGEKEFIVIRCMGD-NFPASLLKDQVKLGSRVLVQG 71 (105)
T ss_dssp EEEEEEEEEE-EEEE-EETTEEEEEEEEEECC--------------CCEEEEEEEECC----------CCCTTCEEEEEE
T ss_pred ceEEEEEEEE-eeec-ccccceEEEEEEEEeCC--------C--CCcccEEEEEEcCc-cchHHHHHHHHhCCCEEEEEe
Confidence 4778999875 2222 22457899999999432 1 24678999999998 55 77899999999999999
Q ss_pred EeEEeeeecC
Q 029355 164 DIEIRVYNDS 173 (194)
Q Consensus 164 rL~tr~y~d~ 173 (194)
+|++..--|.
T Consensus 72 rLRm~p~~d~ 81 (105)
T 4dka_C 72 TLRMNRHVDD 81 (105)
T ss_dssp EEECCCEECT
T ss_pred EEEeeecccc
Confidence 9999877775
No 31
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=96.32 E-value=0.02 Score=41.45 Aligned_cols=79 Identities=20% Similarity=0.201 Sum_probs=54.0
Q ss_pred cEEEEEEEeCCCceEEEe--cCCe--EEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeEE
Q 029355 85 HKAIICGKVKDTPVQKIL--RNGK--TVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVY 160 (194)
Q Consensus 85 NkV~LiGrVg~dPelk~t--~nG~--~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V~ 160 (194)
..+.++|+|-.-.+.+.. ++|. .+..+.|+ |. +|. +++++|++ .|+. .+++|+.|.
T Consensus 12 ~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~------De-TG~---------I~~tlW~~-~~~~---~i~~Gdvv~ 71 (97)
T 3e0e_A 12 LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLK------DD-TGS---------IRGTLWNE-LADF---EVKKGDIAE 71 (97)
T ss_dssp EEEEEEEEEEEECCCEEEC----CCEEEEEEEEE------ET-TEE---------EEEEEEGG-GGGC---CCCTTCEEE
T ss_pred CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEE------CC-CCc---------EEEEEECC-cccc---ccCCCCEEE
Confidence 578899999887666553 4774 45555554 22 563 89999999 6764 799999999
Q ss_pred EEEEeEEeeeecCCCCeEEEEEEEEEEecCeee
Q 029355 161 VEGDIEIRVYNDSINGEVKNIPEICIRRDGNSY 193 (194)
Q Consensus 161 VeGrL~tr~y~d~~dG~~r~~~EI~v~~~G~~~ 193 (194)
|.|..+. |. | .+|+.+.+.|.|.
T Consensus 72 i~g~v~~--~~----~----~~el~~g~~~~i~ 94 (97)
T 3e0e_A 72 VSGYVKQ--GY----S----GLEISVDNIGIIE 94 (97)
T ss_dssp EEEEEEE--C----------CEEEEEEEEEEEE
T ss_pred EEEEEEE--cC----C----eEEEEECCCcEEE
Confidence 9996633 31 2 5688888887763
No 32
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=95.63 E-value=0.03 Score=41.09 Aligned_cols=68 Identities=12% Similarity=0.146 Sum_probs=50.0
Q ss_pred EEEEEEEeCCCceEE--EecCC--eEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeEEE
Q 029355 86 KAIICGKVKDTPVQK--ILRNG--KTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYV 161 (194)
Q Consensus 86 kV~LiGrVg~dPelk--~t~nG--~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V~V 161 (194)
.+.++|.|.+--+.+ .+++| ..+..+.|+= + +| -+++++|++ .++. ...+.+|+.|.|
T Consensus 18 ~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D------~-TG---------~I~~t~w~~-~~~~-~~~l~~G~vv~i 79 (115)
T 2k50_A 18 ETPVTGRVMKISSPRTFTTRKGREGKLANVIIAD------D-TG---------ELRAVFWTE-NIKL-LKKFREGDVIRI 79 (115)
T ss_dssp EEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEE------T-TE---------EEEEEEETT-GGGG-GGTCCTTSEEEE
T ss_pred EeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEe------C-CC---------eEEEEEeCc-hhhh-hhcCCCCCEEEE
Confidence 468899998874555 45788 6787777762 2 34 389999999 6664 468999999999
Q ss_pred EEEeEEeeee
Q 029355 162 EGDIEIRVYN 171 (194)
Q Consensus 162 eGrL~tr~y~ 171 (194)
.|..-...|.
T Consensus 80 ~g~~v~~~f~ 89 (115)
T 2k50_A 80 KDVNIRGGFG 89 (115)
T ss_dssp EEEEECCCSS
T ss_pred EeeEEccccC
Confidence 9987444464
No 33
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=95.54 E-value=0.064 Score=39.52 Aligned_cols=66 Identities=20% Similarity=0.177 Sum_probs=48.9
Q ss_pred cEEEEEEEeCCCceEEEe--cCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeEEEE
Q 029355 85 HKAIICGKVKDTPVQKIL--RNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVE 162 (194)
Q Consensus 85 NkV~LiGrVg~dPelk~t--~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V~Ve 162 (194)
+.+.+.|+|-.-.+.+.. ++|.....+++... |. +| -+++++|++ .|+. .+.+|+.|.+.
T Consensus 15 ~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~----D~-TG---------~IrvtlW~~-~a~~---~l~~Gdvv~i~ 76 (105)
T 3dm3_A 15 MTATFEGEVISALPIKEFKRADGSIGKLKSFIVR----DE-TG---------SIRVTLWDN-LTDI---DVGRGDYVRVR 76 (105)
T ss_dssp EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEE----ET-TE---------EEEEEEEGG-GGGS---CCCTTCEEEEE
T ss_pred CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEE----CC-CC---------cEEEEEECc-cccc---ccCCCCEEEEE
Confidence 579999999988777665 47866555555442 22 44 289999999 7765 79999999998
Q ss_pred EEeEEe
Q 029355 163 GDIEIR 168 (194)
Q Consensus 163 GrL~tr 168 (194)
|..+..
T Consensus 77 g~vk~~ 82 (105)
T 3dm3_A 77 GYIREG 82 (105)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 877665
No 34
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=94.52 E-value=0.22 Score=36.51 Aligned_cols=76 Identities=14% Similarity=0.216 Sum_probs=53.5
Q ss_pred cccEEEEEEEeCCCceEEEecCCeE--EEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeEE
Q 029355 83 GVHKAIICGKVKDTPVQKILRNGKT--VTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVY 160 (194)
Q Consensus 83 ~mNkV~LiGrVg~dPelk~t~nG~~--v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V~ 160 (194)
+++-|.++|.|-.--+.+.+++|.+ ++.+.|+ |+ +|. +++++|++ . +.+|+.|.
T Consensus 12 g~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~------De-TG~---------I~~tlW~~-~-------l~~Gdvv~ 67 (106)
T 2k75_A 12 STPYVSVIGKITGIHKKEYESDGTTKSVYQGYIE------DD-TAR---------IRISSFGK-Q-------LQDSDVVR 67 (106)
T ss_dssp TCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE------CS-SCE---------EEEEEESS-C-------CCTTEEEE
T ss_pred CCceEEEEEEEEEccccccccCCCeeEEEEEEEE------cC-CCe---------EEEEEEcC-c-------cCCCCEEE
Confidence 4566788888887666666788975 6666665 22 563 89999999 4 99999999
Q ss_pred EE-EEeEEeeeecCCCCeEEEEEEEEEEecCee
Q 029355 161 VE-GDIEIRVYNDSINGEVKNIPEICIRRDGNS 192 (194)
Q Consensus 161 Ve-GrL~tr~y~d~~dG~~r~~~EI~v~~~G~~ 192 (194)
|. |..+. |. | .+++.+.+.|.|
T Consensus 68 i~ng~v~~--~~----g----~~~L~v~~~~~I 90 (106)
T 2k75_A 68 IDNARVAQ--FN----G----YLSLSVGDSSRI 90 (106)
T ss_dssp EEEEEEEE--ET----T----EEEEEECTTSEE
T ss_pred EEeeEEeE--EC----C----EEEEEECCcEEE
Confidence 99 66653 52 3 246666665554
No 35
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=93.82 E-value=0.16 Score=37.74 Aligned_cols=63 Identities=14% Similarity=0.213 Sum_probs=43.7
Q ss_pred ccEEEEEEEeCCCceEE--EecCCe-EEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeEE
Q 029355 84 VHKAIICGKVKDTPVQK--ILRNGK-TVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVY 160 (194)
Q Consensus 84 mNkV~LiGrVg~dPelk--~t~nG~-~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V~ 160 (194)
.+.+.++|.|-+--+.+ .+++|+ .+..+.|+ |+ +| -+++++|++ .| +.+..|+.|+
T Consensus 12 ~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~------D~-TG---------~I~~tlW~~-~~----~~~~~G~vv~ 70 (119)
T 1o7i_A 12 MESVNVTVRVLEASEARQIQTKNGVRTISEAIVG------DE-TG---------RVKLTLWGK-HA----GSIKEGQVVK 70 (119)
T ss_dssp CSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEE------ET-TE---------EEEEEEEGG-GT----TCCCTTCEEE
T ss_pred CCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEE------eC-CC---------EEEEEEECC-hh----hcCCCCCEEE
Confidence 34566777776653333 567886 77777666 22 45 289999999 55 3589999999
Q ss_pred EE-EEeEE
Q 029355 161 VE-GDIEI 167 (194)
Q Consensus 161 Ve-GrL~t 167 (194)
|. |+...
T Consensus 71 i~~g~v~~ 78 (119)
T 1o7i_A 71 IENAWTTA 78 (119)
T ss_dssp EEEEEEEE
T ss_pred EEeEEEEE
Confidence 99 76654
No 36
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=92.52 E-value=0.21 Score=36.83 Aligned_cols=64 Identities=17% Similarity=0.080 Sum_probs=49.6
Q ss_pred cccEEEEEEEeCCCceEEEecC--C-eEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeE
Q 029355 83 GVHKAIICGKVKDTPVQKILRN--G-KTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSV 159 (194)
Q Consensus 83 ~mNkV~LiGrVg~dPelk~t~n--G-~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V 159 (194)
+++...+.|+|..-.++|...+ | ..+..|.|+ |. +| -+++++|++ +|+.+...|+.|+.+
T Consensus 13 ~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~------De-~G---------~I~at~~~~-~~~~f~~~l~eG~vy 75 (114)
T 1ynx_A 13 YQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFL------DT-SG---------EIRATAFND-FATKFNEILQEGKVY 75 (114)
T ss_dssp TTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEE------ET-TE---------EEEEEECHH-HHHHHHHHSCSSSEE
T ss_pred CCCceEEEEEEEEeccceEEecCCCCceEEEEEEE------CC-CC---------eEEEEECHH-HHHHHHhhcccCcEE
Confidence 4667889999999888887754 3 234455433 33 35 389999999 999999999999999
Q ss_pred EEEE
Q 029355 160 YVEG 163 (194)
Q Consensus 160 ~VeG 163 (194)
+|.+
T Consensus 76 ~Is~ 79 (114)
T 1ynx_A 76 YVSK 79 (114)
T ss_dssp EEES
T ss_pred EECC
Confidence 9998
No 37
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=89.16 E-value=3.3 Score=41.66 Aligned_cols=73 Identities=14% Similarity=0.163 Sum_probs=56.1
Q ss_pred cccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCc-hHHHHHHhcCCCCCeEEE
Q 029355 83 GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNE-ILGSYAVKQLVKNSSVYV 161 (194)
Q Consensus 83 ~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~-~lAe~v~~~L~KGs~V~V 161 (194)
.+..|++.|.|-. -+.+.++||+.+..|.|. . .++-+.|..|-+ .....+.+.+++|+-|.|
T Consensus 16 ~~~~~~~~g~v~~-~~~~~~~~~~~~~~~~~t-d---------------~~~~~~~k~f~~~~~~~~~~~~~~~g~~~~~ 78 (1041)
T 3f2b_A 16 EERRVVVQGYVFD-AEVSELKSGRTLLTMKIT-D---------------YTNSILVKMFSRDKEDAELMSGVKKGMWVKV 78 (1041)
T ss_dssp CEEEEEEEEEEEE-EEEEECTTSCEEEEEEEE-C---------------SSCEEEEEEECSSHHHHHHHHTCCTTCEEEE
T ss_pred ccceEEEEEEEEE-EEEEEccCCCEEEEEEEE-e---------------CCCCEEEEEeecccchHHHHhcCCCCCEEEE
Confidence 3678999999886 789999999988877763 1 123478888854 122335678999999999
Q ss_pred EEEeEEeeeec
Q 029355 162 EGDIEIRVYND 172 (194)
Q Consensus 162 eGrL~tr~y~d 172 (194)
.|.++...|..
T Consensus 79 ~g~~~~d~~~~ 89 (1041)
T 3f2b_A 79 RGSVQNDTFVR 89 (1041)
T ss_dssp EEEEEEETTTT
T ss_pred EEEEEeccCCc
Confidence 99999998854
No 38
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=88.53 E-value=1.4 Score=33.17 Aligned_cols=62 Identities=16% Similarity=0.184 Sum_probs=43.6
Q ss_pred cccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHH---HHhcCCCCCeE
Q 029355 83 GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSY---AVKQLVKNSSV 159 (194)
Q Consensus 83 ~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~---v~~~L~KGs~V 159 (194)
.++.|.|+|.|-+- ..+.+++.|.|. |. +|. +.|..|.. ..+. -...+..|+.|
T Consensus 35 ~i~~V~iVG~V~~~------~~~~~~~~~~ld------D~-TG~---------I~~~~W~~-~~~~~~~~~~~~~~g~yV 91 (136)
T 4gop_B 35 ELGQLTFVAVVRNI------SRNATNVAYSVE------DG-TGQ---------IEVRQWLD-SSSDDSSKASEIRNNVYV 91 (136)
T ss_dssp BCCEEEEEEEEEEE------EECSSEEEEEEE------CS-SCE---------EEEEEECC---------CCSCCTTCEE
T ss_pred EEEEEEEEEEEEEE------EecCCeEEEEEE------CC-CCC---------EEEEEecc-cCCcccccccccCCCCEE
Confidence 38899999998752 244567778775 22 453 78999986 3321 25679999999
Q ss_pred EEEEEeEE
Q 029355 160 YVEGDIEI 167 (194)
Q Consensus 160 ~VeGrL~t 167 (194)
.|.|+++.
T Consensus 92 rV~G~v~~ 99 (136)
T 4gop_B 92 RVLGTLKS 99 (136)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 99999866
No 39
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=87.69 E-value=0.92 Score=37.01 Aligned_cols=64 Identities=19% Similarity=0.175 Sum_probs=47.2
Q ss_pred cccEEEEEEEeCCCceEEEecC--C-eEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeE
Q 029355 83 GVHKAIICGKVKDTPVQKILRN--G-KTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSV 159 (194)
Q Consensus 83 ~mNkV~LiGrVg~dPelk~t~n--G-~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V 159 (194)
+++...|.|+|..--++|...+ | ..+..+.|+ |. +| -+++++|++ +|+.+...|+.|+-+
T Consensus 17 ~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~------De-~G---------~I~at~~~~-~~~~~~~~l~~G~vy 79 (246)
T 1jmc_A 17 YQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELV------DE-SG---------EIRATAFNE-QVDKFFPLIEVNKVY 79 (246)
T ss_dssp TCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEE------CS-SC---------EEEEEEEHH-HHHHHGGGCCTTCEE
T ss_pred CCCceEEEEEEEEecccceeeCCCCCceEEEEEEE------CC-CC---------eEEEEEChH-HHHHhhhhcccCCEE
Confidence 4566779999998777776543 3 234444333 33 35 289999999 899999999999999
Q ss_pred EEEE
Q 029355 160 YVEG 163 (194)
Q Consensus 160 ~VeG 163 (194)
++.+
T Consensus 80 ~i~~ 83 (246)
T 1jmc_A 80 YFSK 83 (246)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9998
No 40
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=86.84 E-value=2.6 Score=31.52 Aligned_cols=62 Identities=10% Similarity=0.180 Sum_probs=41.6
Q ss_pred ccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHH--HHHhcCCCCCeEEE
Q 029355 84 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGS--YAVKQLVKNSSVYV 161 (194)
Q Consensus 84 mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe--~v~~~L~KGs~V~V 161 (194)
++.|.|+|.|-+- ....+++.|.|. |. +|. -+.|..|.. ..+ .-...+..|+.|.|
T Consensus 31 i~~V~iVG~V~~~------~~~~~~~~~~ld------D~-TG~--------~I~~~~W~~-~~~~~~~~~~~~~g~yVrV 88 (132)
T 3kdf_D 31 ISQVTIVGIIRHA------EKAPTNIVYKID------DM-TAA--------PMDVRQWVD-TDDTSSENTVVPPETYVKV 88 (132)
T ss_dssp CCEEEEEEEEEEE------EECSSEEEEEEE------CS-SSS--------CEEEEEEC----------CCCCTTCEEEE
T ss_pred EEEEEEEEEEEEE------EEcCCeEEEEEE------CC-CCC--------EEEEEEEcc-CCCcccccccccCCCEEEE
Confidence 7899999999752 234467777765 22 562 178888876 221 22567999999999
Q ss_pred EEEeEE
Q 029355 162 EGDIEI 167 (194)
Q Consensus 162 eGrL~t 167 (194)
.|+|+.
T Consensus 89 ~G~l~~ 94 (132)
T 3kdf_D 89 AGHLRS 94 (132)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999887
No 41
>2hql_A Hypothetical protein Mg376 homolog; structural genomics, conserved hypothetical protein, GI:1673959, MPN554, OB fold; 2.00A {Mycoplasma pneumoniae}
Probab=84.20 E-value=10 Score=27.66 Aligned_cols=88 Identities=16% Similarity=0.161 Sum_probs=59.2
Q ss_pred cccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeEEEE
Q 029355 83 GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVE 162 (194)
Q Consensus 83 ~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V~Ve 162 (194)
.+|.|.|.|.|-+ .+-..+ +.-.-.++...+.| |+. .-++|+-+-+-++ +|=.+.++.+|=..+.|+
T Consensus 7 MLN~V~LEG~IeS---~kWS~k-KTGF~VTIkQkR~F-----Ger---~FTDyyViYAN~Q-L~~ELEky~~k~k~isie 73 (110)
T 2hql_A 7 MLNRVFLEGEIES---SCWSVK-KTGFLVTIKQMRFF-----GER---LFTDYYVIYANGQ-LAYELEKHTKKYKTISIE 73 (110)
T ss_dssp CCEEEEEEEEEEE---EEECTT-CSEEEEEEEEEEEE-----TTE---EEEEEEEEEEEHH-HHHHHHHHHTTCSEEEEE
T ss_pred eEEEEEEeeeeeh---hccccc-CceEEEEEeehhhh-----ccc---cceeEEEEEECCe-eehhHHHhhhhceEEEEe
Confidence 4799999999864 223322 21222334443433 432 4689999999999 999999999999999999
Q ss_pred EEeEEeeeecCCCCeEEEEEEEE
Q 029355 163 GDIEIRVYNDSINGEVKNIPEIC 185 (194)
Q Consensus 163 GrL~tr~y~d~~dG~~r~~~EI~ 185 (194)
|.|++. .++..+.-++..+++
T Consensus 74 G~L~TY--~ekkS~iWKTtI~~~ 94 (110)
T 2hql_A 74 GILRTY--LERKSEIWKTTIEIV 94 (110)
T ss_dssp EEEEEE--EETTTTEEEEEEEEE
T ss_pred eehhhH--HHHhcccceeEEEEE
Confidence 999874 444366555554443
No 42
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=81.08 E-value=4.3 Score=36.61 Aligned_cols=78 Identities=18% Similarity=0.196 Sum_probs=54.8
Q ss_pred CCCCCCCCcc-----ccccccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCch
Q 029355 70 PQGVDPRRGW-----GFRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEI 144 (194)
Q Consensus 70 ~~~~~~~~~~-----~m~~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~ 144 (194)
-||-|.+-.. .++..-.+.+.|.|...|.. .+.|+.+ |+|..+ .+ -++|++|.+.
T Consensus 265 NQgTD~Hl~~~~~i~~~~~~~~~~v~G~V~~~P~~--~~GGHV~--f~l~d~-------~~---------~i~c~ayept 324 (402)
T 3au7_A 265 NHATDMHLIGEEEVHRLENYRSYRLRGRVTLEPYD--IEGGHVF--FEIDTK-------FG---------SVKCAAFEPT 324 (402)
T ss_dssp CTTSCTTEEEGGGCSSCCTTCEEEEEEEEEEEEEE--ETTTEEE--EEEEET-------TE---------EEEEEECGGG
T ss_pred cCCchHHhcccccccccccCceEEEEEEEecCcEe--ccCceEE--EEEEcC-------CC---------EEEEEEEccc
Confidence 4666665333 24556789999999988765 5678755 555432 12 3899999931
Q ss_pred -HHHHHHhcCCCCCeEEEEEEeEE
Q 029355 145 -LGSYAVKQLVKNSSVYVEGDIEI 167 (194)
Q Consensus 145 -lAe~v~~~L~KGs~V~VeGrL~t 167 (194)
....+...|.+||.|.|-|.+..
T Consensus 325 k~fr~~vr~L~~GD~V~v~G~v~~ 348 (402)
T 3au7_A 325 KQFRNVIRLLRKGDVVEVYGSMKK 348 (402)
T ss_dssp TTHHHHHTTCCTTCEEEEEEEEET
T ss_pred hHHHHHHhcCCCCCEEEEEEeecC
Confidence 35678889999999999999554
No 43
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=75.25 E-value=7.8 Score=32.46 Aligned_cols=63 Identities=10% Similarity=0.173 Sum_probs=42.5
Q ss_pred cccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHH--HHHhcCCCCCeEE
Q 029355 83 GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGS--YAVKQLVKNSSVY 160 (194)
Q Consensus 83 ~mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe--~v~~~L~KGs~V~ 160 (194)
-++.|.|+|.|-.- ..+.+++.|+|. |. +|. -+.|.+|.. ..+ .-...+..|+.|.
T Consensus 70 ~i~~V~ivG~V~~i------~~~~~~~~~~L~------D~-TG~--------~I~~k~W~~-~~~~~~~~~~~~~G~yVr 127 (270)
T 2pi2_A 70 EISQVTIVGIIRHA------EKAPTNIVYKID------DM-TAA--------PMDVRQWVD-TDDTSSENTVVPPETYVK 127 (270)
T ss_dssp EESEEEEEEEEEEE------EECSSEEEEEEE------CS-SSS--------CEEEEEECC--------CCCCCTTCEEE
T ss_pred EEEEEEEEEEEEEE------EeccceEEEEEE------CC-CCC--------EEEEEEEcC-cCcccchhhcCCCCCEEE
Confidence 37899999998752 234567777765 22 452 278889976 322 1245799999999
Q ss_pred EEEEeEE
Q 029355 161 VEGDIEI 167 (194)
Q Consensus 161 VeGrL~t 167 (194)
|.|+++.
T Consensus 128 V~G~v~~ 134 (270)
T 2pi2_A 128 VAGHLRS 134 (270)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999885
No 44
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=71.37 E-value=4 Score=28.08 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=23.9
Q ss_pred EEeEEeeeecCCCCeEEEEEEEEEEecCeee
Q 029355 163 GDIEIRVYNDSINGEVKNIPEICIRRDGNSY 193 (194)
Q Consensus 163 GrL~tr~y~d~~dG~~r~~~EI~v~~~G~~~ 193 (194)
|.-+.|.|+|. +|+-+--.+++--++|+|+
T Consensus 1 ~p~k~RtWtDr-tG~F~VeA~flg~~dgki~ 30 (68)
T 2hbp_A 1 GSKKSRLWVDR-SGTFKVDAEFIGCAKGKIH 30 (68)
T ss_dssp --CCSEEEEBS-SSCCEEEEEEEEEETTEEE
T ss_pred CCccccEEEcC-CCCeEEEEEEEEEeCCEEE
Confidence 45578999999 9998888888777899986
No 45
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=70.96 E-value=8.5 Score=34.27 Aligned_cols=64 Identities=13% Similarity=0.039 Sum_probs=47.9
Q ss_pred cccEEEEEEEeCCCceEEEecC--Ce-EEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeE
Q 029355 83 GVHKAIICGKVKDTPVQKILRN--GK-TVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSV 159 (194)
Q Consensus 83 ~mNkV~LiGrVg~dPelk~t~n--G~-~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V 159 (194)
+++...|.|+|..--.+|...+ |. .+..|.|+ |. +| -+++++|++ +|+.+...|+.|+-+
T Consensus 12 ~~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~------De-~G---------~I~at~~~~-~~~~f~~~l~eG~vy 74 (444)
T 4gop_C 12 YQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLL------DD-SG---------EIKATGFND-AVDRFYPLLQENHVY 74 (444)
T ss_dssp TCCSCEEEEECCEECCCEEEECSSCEEEEEEEEEE------CS-SC---------EEEEEEETH-HHHHHTTTCCTTCEE
T ss_pred CCcceEEEEEEEEccCcceecCCCCCceEEEEEEE------cC-CC---------EEEEEEeHH-HHHHHHHheecCCEE
Confidence 4567889999998766776543 32 44444443 32 35 389999999 999999999999999
Q ss_pred EEEE
Q 029355 160 YVEG 163 (194)
Q Consensus 160 ~VeG 163 (194)
+|.+
T Consensus 75 ~Is~ 78 (444)
T 4gop_C 75 LISK 78 (444)
T ss_dssp EEES
T ss_pred EEcC
Confidence 9998
No 46
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=64.31 E-value=7.9 Score=39.58 Aligned_cols=65 Identities=20% Similarity=0.326 Sum_probs=29.6
Q ss_pred EEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeEEEEEEe
Q 029355 86 KAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVEGDI 165 (194)
Q Consensus 86 kV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V~VeGrL 165 (194)
+|.+.|-|.. -..+.|++|+.++.++|.- . +|. ++|++|.+ .-+.....|..+..|.|+|++
T Consensus 1044 ~v~v~G~v~~-~~~~~Tk~G~~maf~tleD------~-tg~---------~evvvf~~-~~~~~~~~l~~~~~~~v~G~v 1105 (1220)
T 2hpi_A 1044 KVLLSGMVEE-VVRKPTRSGGMMARFTLSD------E-TGA---------LEVVVFGR-AYEGVSPKLKEDIPLLVLAEV 1105 (1220)
T ss_dssp EEEEEEEECC-C------------CEEEEE------T-TEE---------EEEC--------------CTTCEEEEEEEE
T ss_pred eEEEEEEEEE-EEEeecCCCCeEEEEEEEE------C-CCC---------EEEEEcHH-HHHHHHHHhccCCEEEEEEEE
Confidence 5778888876 4666788998888777762 2 342 78999999 677778889999999999999
Q ss_pred EEe
Q 029355 166 EIR 168 (194)
Q Consensus 166 ~tr 168 (194)
+.+
T Consensus 1106 ~~~ 1108 (1220)
T 2hpi_A 1106 EKG 1108 (1220)
T ss_dssp C--
T ss_pred EEC
Confidence 743
No 47
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=59.51 E-value=46 Score=23.84 Aligned_cols=61 Identities=11% Similarity=0.017 Sum_probs=40.0
Q ss_pred ccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeEEEE-
Q 029355 84 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVE- 162 (194)
Q Consensus 84 mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V~Ve- 162 (194)
...|.++|+|-+.- ..++|..+....|+ |+ +|. +++++|++. .+..+..|+.|.|.
T Consensus 15 ~~~v~v~~~V~~~~---~~~~~~~~~~~~l~------De-TG~---------I~~t~W~~~----~~~~~~~G~~V~i~n 71 (109)
T 2kbn_A 15 GQWANLKAKVIQLW---ENTHESISQVGLLG------DE-TGI---------IKFTIWKNA----ELPLLEQGESYLLRS 71 (109)
T ss_dssp TCEEEEEEEEEEEE---ECCCSSEEEEEEEE------CT-TCC---------EEEEEEGGG----CCCCCCTTCEEEEEE
T ss_pred CCcEEEEEEEEEeE---cCCCCeEEEEEEEE------CC-CCe---------EEEEEECcc----cccccCCCCEEEEEE
Confidence 44677888887532 23455655444333 33 564 899999962 24589999999999
Q ss_pred EEeEE
Q 029355 163 GDIEI 167 (194)
Q Consensus 163 GrL~t 167 (194)
|..+.
T Consensus 72 ~~v~~ 76 (109)
T 2kbn_A 72 VVVGE 76 (109)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 56554
No 48
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=49.13 E-value=12 Score=28.85 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=23.1
Q ss_pred EEEEEEeCchHHHHHHhcCCCCCeEEE
Q 029355 135 WHRIAVHNEILGSYAVKQLVKNSSVYV 161 (194)
Q Consensus 135 w~~V~~wg~~lAe~v~~~L~KGs~V~V 161 (194)
=++|++|.+ .|.++.++++.|+-|.+
T Consensus 66 tlqVtlwd~-ha~~ar~~lk~Gd~v~L 91 (143)
T 4hik_A 66 SIRCILWDE-HDFYCRNYIKEGDYVVM 91 (143)
T ss_dssp CEEEEECHH-HHHHHTTTCCTTCEEEE
T ss_pred EEEEEEECc-HHHHHHhhCCCCCEEEE
Confidence 369999999 89999888999999984
No 49
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=48.23 E-value=31 Score=26.57 Aligned_cols=43 Identities=9% Similarity=0.130 Sum_probs=29.9
Q ss_pred EEEEEeCchHHHHHHhcCCCCCeEEEEEEeEEeeeecCCCCeEEEEEEEEEEecCee
Q 029355 136 HRIAVHNEILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGNS 192 (194)
Q Consensus 136 ~~V~~wg~~lAe~v~~~L~KGs~V~VeGrL~tr~y~d~~dG~~r~~~EI~v~~~G~~ 192 (194)
+++++|++ +++ .+++|+.|.+.+-.-. .|. | .+++.+.+-|+|
T Consensus 75 I~ftlW~e-~~~----~l~~Gd~v~i~na~v~-~~~----G----~~~L~vgk~g~I 117 (145)
T 1wjj_A 75 ILFTARND-QVD----LMKPGATVILRNSRID-MFK----G----TMRLGVDKWGRI 117 (145)
T ss_dssp EEEEECTT-HHH----HTCTTCEEEEEEEEEE-EET----T----EEEEEECTTCCB
T ss_pred EEEEEecC-CcC----cCCCCCEEEEeccEEE-eEC----C----EEEEEECCCEEE
Confidence 89999998 665 3779999999874332 352 3 256666666655
No 50
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=46.70 E-value=52 Score=26.28 Aligned_cols=68 Identities=13% Similarity=0.077 Sum_probs=40.8
Q ss_pred EEEEEEEeCCCceEEEe--c-CCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeEEEE
Q 029355 86 KAIICGKVKDTPVQKIL--R-NGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVE 162 (194)
Q Consensus 86 kV~LiGrVg~dPelk~t--~-nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V~Ve 162 (194)
-|-++|.|..--+++.. + +|+....-.+... |. +|. -++|++||+ .|+.+. ...|+.|.+.
T Consensus 140 ~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~----D~-sg~--------~i~~tLWg~-~a~~~~--~~~~~vv~i~ 203 (246)
T 1jmc_A 140 LVDIIGICKSYEDATKITVRSNNREVAKRNIYLM----DT-SGK--------VVTATLWGE-DADKFD--GSRQPVLAIK 203 (246)
T ss_dssp EEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEE----CT-TCC--------EEEEEEEHH-HHHHCC--CTTCCEEEEE
T ss_pred ceeEEEEEEEecCeEEEEEecCCCccEEEEEEEE----CC-CCC--------EEEEEEEch-hhhhcc--cCCCCEEEEE
Confidence 46788888754333322 3 5765544444332 22 342 389999999 888654 5778877776
Q ss_pred EEeEEeee
Q 029355 163 GDIEIRVY 170 (194)
Q Consensus 163 GrL~tr~y 170 (194)
|- +...|
T Consensus 204 ~~-~v~~f 210 (246)
T 1jmc_A 204 GA-RVSDF 210 (246)
T ss_dssp EE-EEECT
T ss_pred EE-EEEec
Confidence 64 33445
No 51
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=45.62 E-value=56 Score=26.85 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=34.4
Q ss_pred ceEEEEEEeCchHHHHHHhcCCCCCeEEEEEEeEEeeee--cCCCCeEEEEEEEEEE
Q 029355 133 VQWHRIAVHNEILGSYAVKQLVKNSSVYVEGDIEIRVYN--DSINGEVKNIPEICIR 187 (194)
Q Consensus 133 t~w~~V~~wg~~lAe~v~~~L~KGs~V~VeGrL~tr~y~--d~~dG~~r~~~EI~v~ 187 (194)
+.-+.|.+.++ +.+.+++||.|.|.|-++..... .+ .+...+.+-|.|.
T Consensus 210 Prsi~v~l~~d-----Lvd~~~PGDrV~vtGI~~~~~~~~~~~-~~~~~~~~yl~an 260 (268)
T 2vl6_A 210 PRQLEIILEDD-----LVDSARPGDRVKVTGILDIKQDSPVKR-GSRAVFDIYMKVS 260 (268)
T ss_dssp CCEEEEEEEGG-----GTTSSCTTCEEEEEEEEEEECSSTTCC-SSCCEEEEEEEEE
T ss_pred CcEEEEEEccC-----ccCcccCCCEEEEEEEEEEeecccccC-CCceEEEEEEEEE
Confidence 45788888887 45679999999999999887653 22 3334455555554
No 52
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=29.38 E-value=1.2e+02 Score=25.06 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=31.9
Q ss_pred ceEEEEEEeCchHHHHHHhcCCCCCeEEEEEEeEEeeeecCCCCeEEEEEEEEEE
Q 029355 133 VQWHRIAVHNEILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIR 187 (194)
Q Consensus 133 t~w~~V~~wg~~lAe~v~~~L~KGs~V~VeGrL~tr~y~d~~dG~~r~~~EI~v~ 187 (194)
+--+.|.+.++ +.+.+++||.|.|.|-++... .. +...+.+-|.|.
T Consensus 197 Prsi~V~l~~d-----Lvd~~~PGDrV~vtGI~~~~~-~~---~~~~~~~~l~a~ 242 (279)
T 1ltl_A 197 PRQITVVLEDD-----LVDTLTPGDIVRVTGTLRTVR-DE---RTKRFKNFIYGN 242 (279)
T ss_dssp CCEEEEEEEGG-----GTTCCCTTCEEEEEEEEEEEE-ET---TTTEEEEEEEEE
T ss_pred CeEEEEEEccc-----ccCccCCCCEEEEEEEEEEee-CC---CCceEEEEEEEE
Confidence 45678888887 456899999999999998773 32 223444444444
No 53
>3ebt_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; 1.30A {Burkholderia pseudomallei K96243} SCOP: d.17.4.9
Probab=27.38 E-value=1.5e+02 Score=20.22 Aligned_cols=36 Identities=14% Similarity=0.248 Sum_probs=21.0
Q ss_pred CCCCeEEEEEEeEEeeeecCCCCeEEEEE--EEEEEecCeee
Q 029355 154 VKNSSVYVEGDIEIRVYNDSINGEVKNIP--EICIRRDGNSY 193 (194)
Q Consensus 154 ~KGs~V~VeGrL~tr~y~d~~dG~~r~~~--EI~v~~~G~~~ 193 (194)
.-|+.|.|+|+... ..+ +|+..... .|.-=++|+|.
T Consensus 78 ~~gd~v~v~~~~~~---~~~-~G~~~~~~~~~v~~~~dGkI~ 115 (132)
T 3ebt_A 78 ESGERIVVLGTRRV---TAV-NGRSATLKFVHVWRFENGRAV 115 (132)
T ss_dssp EETTEEEEEEEEEE---EET-TSCEEEEEEEEEEEEETTEEE
T ss_pred EeCCEEEEEEEEEE---EeC-CCCEEeeeEEEEEEEECCEEE
Confidence 35788888887663 344 77654322 22222588885
No 54
>2f41_A Transcription factor FAPR; 'HOT-DOG' fold, gene regulation; 2.50A {Bacillus subtilis} SCOP: d.38.1.5
Probab=26.77 E-value=1.1e+02 Score=21.52 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=20.4
Q ss_pred cCCCCCeEEEEEEeEEeeeecCCCCeEEEEEEEEEEecCeee
Q 029355 152 QLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGNSY 193 (194)
Q Consensus 152 ~L~KGs~V~VeGrL~tr~y~d~~dG~~r~~~EI~v~~~G~~~ 193 (194)
-+..||.|.+++++....... + ....++.+..+|+++
T Consensus 72 Pv~~Gd~l~~~a~v~~~~~~~---~--~~~v~~~~~~~g~~v 108 (121)
T 2f41_A 72 QVKQGERVVAKAKVTAVEKEK---G--RTVVEVNSYVGEEIV 108 (121)
T ss_dssp CCBTTCEEEEEEEEEEECSSS---S--CEEEEEEEEETTEEE
T ss_pred CcCCCCEEEEEEEEEEEEccC---C--EEEEEEEEEECCEEE
Confidence 356788888888776433221 2 233444444556654
No 55
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=24.86 E-value=59 Score=26.26 Aligned_cols=63 Identities=10% Similarity=0.082 Sum_probs=39.1
Q ss_pred EEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCchHHHHHHhcCCCCCeEEEEE
Q 029355 86 KAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVEG 163 (194)
Q Consensus 86 kV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~lAe~v~~~L~KGs~V~VeG 163 (194)
...++|-|....+.|.+.+|++|..+.|..=. + . ...+.+-+||+ ..+. ...+..|+.|.|--
T Consensus 57 dwv~~GVV~~Ks~pk~~~~gk~y~~w~l~DL~---~---~-------~~~V~lfLFg~-a~~~-~~k~~~G~ViaiLN 119 (200)
T 3ebe_A 57 DWVTFGVIVKKITPQSSNNGKTFSIWRLNDLK---D---L-------DKYISLFLFGD-VHKE-HWKTDQGTVIGLLN 119 (200)
T ss_dssp CEEEEEEEEEEECC-------CCEEEEEECSS---S---T-------TCCEEEEECHH-HHHH-HTTCCTTEEEEEES
T ss_pred CEEEEEEEEecCCccCcCCCCeEEEEEEEecC---C---C-------CcEEEEEEech-HHHH-hcCcCCceEEEEEC
Confidence 46678888888788888899999888776321 1 1 12489999998 3443 44699999998754
No 56
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=24.54 E-value=1.1e+02 Score=23.72 Aligned_cols=63 Identities=21% Similarity=0.187 Sum_probs=40.3
Q ss_pred ccEEEEEEEeCCCceEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeCch--HHHHHHhcCCCCCeEEE
Q 029355 84 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEI--LGSYAVKQLVKNSSVYV 161 (194)
Q Consensus 84 mNkV~LiGrVg~dPelk~t~nG~~v~~FsVAv~~~~~dr~~Ge~~~~~~t~w~~V~~wg~~--lAe~v~~~L~KGs~V~V 161 (194)
++.|.|+|.|..-- . ... .+.|+| +|- +|. -++|++|-+. .+..+...+..|+.|.|
T Consensus 47 I~~V~IvGiVv~~~---~-~~~--~~~ytI------DD~-TG~--------~I~cv~w~~~~~~~~~~~~~l~~G~~VrV 105 (159)
T 3kf6_A 47 IRWIQIVGYIAAID---I-YEG--KHVLTV------DDC-SGM--------VLRVVFIIQDDFSMSKRAISMSPGNVVCV 105 (159)
T ss_dssp ECEEEEEEEEEEEE---E-ETT--EEEEEE------ECS-SSC--------EEEEEEEGGGCHHHHHHHTTCCTTCEEEE
T ss_pred EEEEEEEEEEEEEE---E-eCC--EEEEEE------ecC-CCC--------eEEEEEEccCCCCcccccccCCCCCEEEE
Confidence 88999999998631 1 121 122222 222 453 4899999772 12234556899999999
Q ss_pred EEEeEE
Q 029355 162 EGDIEI 167 (194)
Q Consensus 162 eGrL~t 167 (194)
.|.+++
T Consensus 106 ~G~v~~ 111 (159)
T 3kf6_A 106 FGKINS 111 (159)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 999966
No 57
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=24.34 E-value=1.9e+02 Score=20.50 Aligned_cols=41 Identities=24% Similarity=0.120 Sum_probs=21.8
Q ss_pred cCCCCC-eEEEEEEeEE----eeeecCCCCeEEEEEEEEEEecCeee
Q 029355 152 QLVKNS-SVYVEGDIEI----RVYNDSINGEVKNIPEICIRRDGNSY 193 (194)
Q Consensus 152 ~L~KGs-~V~VeGrL~t----r~y~d~~dG~~r~~~EI~v~~~G~~~ 193 (194)
.|+.|+ .|-+.|.+.. +.|+.+ +|...+..-+.++.-|.|.
T Consensus 7 dL~~~~~~v~~~~~V~~~~~~~~~~~k-~G~~~~~~~~l~D~TG~I~ 52 (119)
T 1o7i_A 7 NLKPNMESVNVTVRVLEASEARQIQTK-NGVRTISEAIVGDETGRVK 52 (119)
T ss_dssp GCCTTCSSEEEEEEEEEECCCEEECCT-TCCEEEEEEEEEETTEEEE
T ss_pred HCcCCCCcEEEEEEEEECCCCeeEEec-CCCEEEEEEEEEeCCCEEE
Confidence 355665 4666666544 455555 6653344444444555554
No 58
>2f3x_A Transcription factor FAPR; 'HOT-DOG' fold / malonyl-COA complex, gene regulation; HET: MLC; 3.10A {Bacillus subtilis} SCOP: d.38.1.5
Probab=24.31 E-value=1.3e+02 Score=22.62 Aligned_cols=38 Identities=11% Similarity=0.154 Sum_probs=22.1
Q ss_pred hcCCCCCeEEEEEEeEEeeeecCCCCeEEEEEEEEEEecCeee
Q 029355 151 KQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGNSY 193 (194)
Q Consensus 151 ~~L~KGs~V~VeGrL~tr~y~d~~dG~~r~~~EI~v~~~G~~~ 193 (194)
+-+..||.|.+++++....... + ....++.+..+|+++
T Consensus 107 rPV~~GD~L~a~a~v~~~~~~~---~--~~~v~~~~~~~g~~V 144 (157)
T 2f3x_A 107 RQVKQGERVVAKAKVTAVEKEK---G--RTVVEVNSYVGEEIV 144 (157)
T ss_dssp SCCBTTCEEEEEEEEEEEETGG---G--EEEEEEEEEETTEEE
T ss_pred CCCCCCCEEEEEEEEEEEEccC---C--EEEEEEEEEECCEEE
Confidence 3467788888888877433221 1 344455555566654
No 59
>2isb_A Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; HET: MSE; 1.66A {Archaeoglobus fulgidus} SCOP: c.8.9.1
Probab=23.70 E-value=83 Score=25.50 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=23.1
Q ss_pred EEEEeCchHHHHHHhcCCCCCeEEEEEEeEEe
Q 029355 137 RIAVHNEILGSYAVKQLVKNSSVYVEGDIEIR 168 (194)
Q Consensus 137 ~V~~wg~~lAe~v~~~L~KGs~V~VeGrL~tr 168 (194)
.+.+-.+ +.+.-.+.|+.||.|++.|.|-+-
T Consensus 16 ~~~l~~P-lt~e~v~~L~vGD~V~LsG~i~ta 46 (192)
T 2isb_A 16 EYELRTP-LVKDQILKLKVGDVVYITGEIFTA 46 (192)
T ss_dssp EEEEESS-CCHHHHHHCCTTCEEEEEEEEEEC
T ss_pred EEEeCCC-CCHHHHhhCCCCCEEEEEEEEEEE
Confidence 3445555 555567789999999999998764
No 60
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=20.71 E-value=1.6e+02 Score=20.60 Aligned_cols=41 Identities=12% Similarity=0.236 Sum_probs=24.5
Q ss_pred cCCCCCeEEEEEEeEEe----eeecCCCCeEEEEEEEE-EEecCeee
Q 029355 152 QLVKNSSVYVEGDIEIR----VYNDSINGEVKNIPEIC-IRRDGNSY 193 (194)
Q Consensus 152 ~L~KGs~V~VeGrL~tr----~y~d~~dG~~r~~~EI~-v~~~G~~~ 193 (194)
.|++|+.|-|.|.+..- .|+.+ +|......++. .+.-|.|.
T Consensus 12 ~L~~g~~v~i~~~V~~~~~~~~~~~k-~G~~~~~~~~~l~D~TG~I~ 57 (115)
T 2k50_A 12 KLEEGAETPVTGRVMKISSPRTFTTR-KGREGKLANVIIADDTGELR 57 (115)
T ss_dssp TCCTTCEEEEEEEEEEECCCEECCCT-TSSCCEEEEEEEEETTEEEE
T ss_pred HCCCCCEeEEEEEEEECCCceEEEcC-CCCEEEEEEEEEEeCCCeEE
Confidence 57788888888876655 55566 67322333333 34555553
Done!