Query 029356
Match_columns 194
No_of_seqs 132 out of 921
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 19:00:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w58_A DNAI, primosome compone 94.9 0.034 1.2E-06 43.3 5.1 77 52-128 83-165 (202)
2 3ec2_A DNA replication protein 94.8 0.092 3.1E-06 40.2 7.2 74 53-127 69-148 (180)
3 2kjq_A DNAA-related protein; s 93.8 0.12 4.1E-06 39.4 5.9 51 74-127 79-130 (149)
4 2qgz_A Helicase loader, putati 90.6 0.16 5.5E-06 43.2 3.3 74 53-128 183-264 (308)
5 1l8q_A Chromosomal replication 78.7 4.2 0.00014 33.8 6.3 74 52-126 66-145 (324)
6 3co5_A Putative two-component 63.4 11 0.00038 27.5 4.9 52 71-126 69-120 (143)
7 2z4s_A Chromosomal replication 59.6 19 0.00064 31.8 6.5 55 71-126 186-241 (440)
8 3bos_A Putative DNA replicatio 59.3 24 0.00082 26.8 6.4 70 52-125 81-151 (242)
9 3n70_A Transport activator; si 51.9 6.9 0.00024 28.7 2.0 53 71-128 70-122 (145)
10 2r8r_A Sensor protein; KDPD, P 32.6 54 0.0019 26.8 4.7 52 70-122 75-127 (228)
11 1w4r_A Thymidine kinase; type 31.1 76 0.0026 25.3 5.2 43 69-119 82-124 (195)
12 1ojl_A Transcriptional regulat 28.9 91 0.0031 25.7 5.6 53 71-127 90-152 (304)
13 3guv_A Site-specific recombina 27.3 90 0.0031 23.2 4.9 38 79-120 76-113 (167)
14 4gmf_A Yersiniabactin biosynth 25.6 36 0.0012 29.6 2.5 61 61-124 97-162 (372)
15 1gdt_A GD resolvase, protein ( 24.1 1.1E+02 0.0038 23.1 4.9 44 73-120 52-95 (183)
16 2gm5_A Transposon gamma-delta 20.7 1.6E+02 0.0054 21.4 5.0 42 74-119 52-93 (139)
No 1
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.88 E-value=0.034 Score=43.34 Aligned_cols=77 Identities=12% Similarity=0.027 Sum_probs=50.6
Q ss_pred CCEEEeeHHHHhCC------CCChhhHHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChhh
Q 029356 52 NGCAYFEFEELCDK------PLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQ 125 (194)
Q Consensus 52 ~~~a~f~F~eLC~~------p~~a~DYl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~~ 125 (194)
..+.+++..++... .-+..+.+.......+++|++|-...........-|-.+++..|..+.++++++..+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~ 162 (202)
T 2w58_A 83 VSSLIVYVPELFRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQ 162 (202)
T ss_dssp CCEEEEEHHHHHHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHH
T ss_pred CeEEEEEhHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHH
Confidence 35667777665431 112345566667788999999955443322222234458899999999999999999999
Q ss_pred hhc
Q 029356 126 LFN 128 (194)
Q Consensus 126 Lf~ 128 (194)
+..
T Consensus 163 l~~ 165 (202)
T 2w58_A 163 LAH 165 (202)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 2
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.75 E-value=0.092 Score=40.22 Aligned_cols=74 Identities=11% Similarity=0.009 Sum_probs=51.9
Q ss_pred CEEEeeHHHHhCC------CCChhhHHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChhhh
Q 029356 53 GCAYFEFEELCDK------PLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQL 126 (194)
Q Consensus 53 ~~a~f~F~eLC~~------p~~a~DYl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~~L 126 (194)
.+..++..++-.. .....+.+....+.+.++|+++-... .+......|..+|+..|+.+..+++++..+++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~-~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~~ 147 (180)
T 3ec2_A 69 RGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSER-LSDWQRELISYIITYRYNNLKSTIITTNYSLQRE 147 (180)
T ss_dssp CCCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSC-CCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC-
T ss_pred eEEEEEHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCc-CCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhHh
Confidence 4566777766532 01122667777889999999965332 2344456777899999999999999999999986
Q ss_pred h
Q 029356 127 F 127 (194)
Q Consensus 127 f 127 (194)
.
T Consensus 148 ~ 148 (180)
T 3ec2_A 148 E 148 (180)
T ss_dssp -
T ss_pred h
Confidence 5
No 3
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.80 E-value=0.12 Score=39.36 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=40.6
Q ss_pred HHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCce-EEEEccCChhhhh
Q 029356 74 GLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRAR-LLCTAEGSPFQLF 127 (194)
Q Consensus 74 ~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~-L~~~a~~~~~~Lf 127 (194)
++..+.+.++|+++-.++ ......+..+|+.+|+.+.. +++++..+|.++.
T Consensus 79 ~~~~~~~lLilDE~~~~~---~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~ 130 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEKLG---NEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLV 130 (149)
T ss_dssp GGGGGCSEEEEESTTCCC---SHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSS
T ss_pred HHHhCCCEEEEeCccccC---hHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHcc
Confidence 446788999999986654 23377799999999999887 8999988887765
No 4
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.58 E-value=0.16 Score=43.21 Aligned_cols=74 Identities=11% Similarity=0.052 Sum_probs=46.8
Q ss_pred CEEEeeHHHHhCC---CC---ChhhHHHHhhccCeEEEcCCCCCCCCCchHHHH-HH-HHHHHHHhcCceEEEEccCChh
Q 029356 53 GCAYFEFEELCDK---PL---GAADYFGLFKIFHTLALEGIPIFGLHNRTAAYR-FV-TLVDVMYENRARLLCTAEGSPF 124 (194)
Q Consensus 53 ~~a~f~F~eLC~~---p~---~a~DYl~La~~f~ti~I~~VP~l~~~~~d~arR-FI-~LID~lYd~~v~L~~~a~~~~~ 124 (194)
.+..+++.+|... .. ...+.+.......+++|++|-..... +..+. +. .+|+..|..+..+++++..+|+
T Consensus 183 ~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~~~~--~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~ 260 (308)
T 2qgz_A 183 STTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQAT--SWVRDEVLQVILQYRMLEELPTFFTSNYSFA 260 (308)
T ss_dssp CEEEEEHHHHHHHHHCCCC----CCTTHHHHTSSEEEEETCCC--------CTTTTHHHHHHHHHHHTCCEEEEESSCHH
T ss_pred cEEEEEHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCC--HHHHHHHHHHHHHHHHHCCCcEEEECCCCHH
Confidence 4556666555431 11 12234555667899999999443322 22233 44 4889999899999999999999
Q ss_pred hhhc
Q 029356 125 QLFN 128 (194)
Q Consensus 125 ~Lf~ 128 (194)
+|..
T Consensus 261 ~l~~ 264 (308)
T 2qgz_A 261 DLER 264 (308)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 9875
No 5
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=78.73 E-value=4.2 Score=33.76 Aligned_cols=74 Identities=11% Similarity=0.277 Sum_probs=52.7
Q ss_pred CCEEEeeHHHHhCCC------CChhhHHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChhh
Q 029356 52 NGCAYFEFEELCDKP------LGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQ 125 (194)
Q Consensus 52 ~~~a~f~F~eLC~~p------~~a~DYl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~~ 125 (194)
..+..++..++...- .....+.....+..+++|++|..+.. .......|..+++.+++.+..+++++..++.+
T Consensus 66 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~-~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~ 144 (324)
T 1l8q_A 66 YRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSG-KERTQIEFFHIFNTLYLLEKQIILASDRHPQK 144 (324)
T ss_dssp CCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTT-CHHHHHHHHHHHHHHHHTTCEEEEEESSCGGG
T ss_pred CEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccC-ChHHHHHHHHHHHHHHHCCCeEEEEecCChHH
Confidence 346677766653211 12334455555688999999999874 22456778999999999999999999988876
Q ss_pred h
Q 029356 126 L 126 (194)
Q Consensus 126 L 126 (194)
+
T Consensus 145 l 145 (324)
T 1l8q_A 145 L 145 (324)
T ss_dssp C
T ss_pred H
Confidence 4
No 6
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=63.36 E-value=11 Score=27.51 Aligned_cols=52 Identities=10% Similarity=0.063 Sum_probs=40.3
Q ss_pred hHHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChhhh
Q 029356 71 DYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQL 126 (194)
Q Consensus 71 DYl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~~L 126 (194)
..++.++ -.++||++|-.++ .+...++..+++.-+..++++++++..+++++
T Consensus 69 ~~~~~a~-~~~l~lDei~~l~---~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~ 120 (143)
T 3co5_A 69 ELLQKAE-GGVLYVGDIAQYS---RNIQTGITFIIGKAERCRVRVIASCSYAAGSD 120 (143)
T ss_dssp HHHHHTT-TSEEEEEECTTCC---HHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC
T ss_pred hHHHhCC-CCeEEEeChHHCC---HHHHHHHHHHHHhCCCCCEEEEEecCCCHHHH
Confidence 4555555 3799999999886 34566677888887778899999998888776
No 7
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=59.64 E-value=19 Score=31.81 Aligned_cols=55 Identities=5% Similarity=0.196 Sum_probs=42.8
Q ss_pred hHHHHhh-ccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChhhh
Q 029356 71 DYFGLFK-IFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQL 126 (194)
Q Consensus 71 DYl~La~-~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~~L 126 (194)
.+..-.. ...+++|++|-.+... ......|..+++.+++.+..+++++..|+.++
T Consensus 186 ~~~~~~~~~~~vL~IDEi~~l~~~-~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l 241 (440)
T 2z4s_A 186 EFREKYRKKVDILLIDDVQFLIGK-TGVQTELFHTFNELHDSGKQIVICSDREPQKL 241 (440)
T ss_dssp HHHHHHTTTCSEEEEECGGGGSSC-HHHHHHHHHHHHHHHTTTCEEEEEESSCGGGC
T ss_pred HHHHHhcCCCCEEEEeCcccccCC-hHHHHHHHHHHHHHHHCCCeEEEEECCCHHHH
Confidence 3444334 6789999999888732 24566799999999999999999999888774
No 8
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=59.30 E-value=24 Score=26.81 Aligned_cols=70 Identities=13% Similarity=0.206 Sum_probs=48.0
Q ss_pred CCEEEeeHHHHhCCCCChhhHHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCce-EEEEccCChhh
Q 029356 52 NGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRAR-LLCTAEGSPFQ 125 (194)
Q Consensus 52 ~~~a~f~F~eLC~~p~~a~DYl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~-L~~~a~~~~~~ 125 (194)
..+.+++..++.... .+.+.-.....+++|+++-.+... ......+..+++.+++.+.. +++++..++.+
T Consensus 81 ~~~~~~~~~~~~~~~---~~~~~~~~~~~vliiDe~~~~~~~-~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~ 151 (242)
T 3bos_A 81 RRSFYIPLGIHASIS---TALLEGLEQFDLICIDDVDAVAGH-PLWEEAIFDLYNRVAEQKRGSLIVSASASPME 151 (242)
T ss_dssp CCEEEEEGGGGGGSC---GGGGTTGGGSSEEEEETGGGGTTC-HHHHHHHHHHHHHHHHHCSCEEEEEESSCTTT
T ss_pred CeEEEEEHHHHHHHH---HHHHHhccCCCEEEEeccccccCC-HHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHH
Confidence 346677777765432 222333466789999999888632 22366788999999999876 88888776654
No 9
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=51.89 E-value=6.9 Score=28.68 Aligned_cols=53 Identities=23% Similarity=0.219 Sum_probs=35.6
Q ss_pred hHHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChhhhhc
Q 029356 71 DYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFN 128 (194)
Q Consensus 71 DYl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~~Lf~ 128 (194)
..++.++. .++||++|..|+.. ...++..++ .-...++++++++..+++++-.
T Consensus 70 ~~~~~a~~-g~l~ldei~~l~~~---~q~~Ll~~l-~~~~~~~~~I~~t~~~~~~~~~ 122 (145)
T 3n70_A 70 DFIALAQG-GTLVLSHPEHLTRE---QQYHLVQLQ-SQEHRPFRLIGIGDTSLVELAA 122 (145)
T ss_dssp HHHHHHTT-SCEEEECGGGSCHH---HHHHHHHHH-HSSSCSSCEEEEESSCHHHHHH
T ss_pred cHHHHcCC-cEEEEcChHHCCHH---HHHHHHHHH-hhcCCCEEEEEECCcCHHHHHH
Confidence 44555544 69999999998743 334444444 2334468999999999987654
No 10
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=32.64 E-value=54 Score=26.85 Aligned_cols=52 Identities=8% Similarity=0.003 Sum_probs=37.5
Q ss_pred hhHHH-HhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCC
Q 029356 70 ADYFG-LFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGS 122 (194)
Q Consensus 70 ~DYl~-La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~ 122 (194)
.|.-+ ++.+++.++|+.++..+....-.+.||- .|.++|++++.++.+....
T Consensus 75 ~~l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~q-DV~~~l~sgidVitT~Nlq 127 (228)
T 2r8r_A 75 MDLDALLKAAPSLVLVDELAHTNAPGSRHTKRWQ-DIQELLAAGIDVYTTVNVQ 127 (228)
T ss_dssp CCHHHHHHHCCSEEEESCTTCBCCTTCSSSBHHH-HHHHHHHTTCEEEEEEEGG
T ss_pred ccHHHHHhcCCCEEEEeCCCCCCcccchhHHHHH-HHHHHHcCCCCEEEEcccc
Confidence 45555 5689999999999876544444455554 5566999999999888743
No 11
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=31.10 E-value=76 Score=25.28 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=33.5
Q ss_pred hhhHHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEc
Q 029356 69 AADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTA 119 (194)
Q Consensus 69 a~DYl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a 119 (194)
..|+.+..+.+++|+|+++--| .+ -+.++..|++.|+++++++
T Consensus 82 ~~d~~~~~~~~DvIlIDEaQFf-k~-------~ve~~~~L~~~gk~VI~~G 124 (195)
T 1w4r_A 82 LRDVAQEALGVAVIGIDEGQFF-PD-------IVEFCEAMANAGKTVIVAA 124 (195)
T ss_dssp GGGGHHHHHTCSEEEESSGGGC-TT-------HHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHhccCCCEEEEEchhhh-HH-------HHHHHHHHHHCCCeEEEEe
Confidence 3456666788999999999998 22 3445588889999999976
No 12
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=28.90 E-value=91 Score=25.70 Aligned_cols=53 Identities=15% Similarity=0.041 Sum_probs=36.4
Q ss_pred hHHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHH----------hcCceEEEEccCChhhhh
Q 029356 71 DYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMY----------ENRARLLCTAEGSPFQLF 127 (194)
Q Consensus 71 DYl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lY----------d~~v~L~~~a~~~~~~Lf 127 (194)
..++.|+. .++||++|-.|+. +...++..+++.-. ..++++++++..+++++.
T Consensus 90 g~~~~a~~-g~L~LDEi~~l~~---~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v 152 (304)
T 1ojl_A 90 GRFVEADG-GTLFLDEIGDISP---LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEV 152 (304)
T ss_dssp CHHHHHTT-SEEEEESCTTCCH---HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHH
T ss_pred CHHHhcCC-CEEEEeccccCCH---HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHH
Confidence 45666654 7999999999864 34455666666542 346899999988876643
No 13
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=27.27 E-value=90 Score=23.20 Aligned_cols=38 Identities=13% Similarity=0.304 Sum_probs=31.2
Q ss_pred cCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEcc
Q 029356 79 FHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAE 120 (194)
Q Consensus 79 f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~ 120 (194)
+++|+|.++-+|+.. ..-++.+++.|-++||+|++...
T Consensus 76 ~d~lvv~~ldRl~R~----~~~~~~~~~~l~~~gv~l~~~~~ 113 (167)
T 3guv_A 76 VSFVLVFKLSRFARN----AADVLSTLQIMQDYGVNLICVED 113 (167)
T ss_dssp CSEEEESCGGGTCSS----HHHHHHHHHHHHHTTCEEEETTT
T ss_pred ccEEEEEeCchhcCC----HHHHHHHHHHHHHCCCEEEEeeC
Confidence 899999999999743 45677888899999999987553
No 14
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=25.58 E-value=36 Score=29.58 Aligned_cols=61 Identities=11% Similarity=-0.003 Sum_probs=41.9
Q ss_pred HHhCCCCChhh---HHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhc--CceEEEEccCChh
Q 029356 61 ELCDKPLGAAD---YFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYEN--RARLLCTAEGSPF 124 (194)
Q Consensus 61 eLC~~p~~a~D---Yl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~--~v~L~~~a~~~~~ 124 (194)
-||++|+++.| -+++|++-.+++..|- ........||||.....+... +...++.+..+.+
T Consensus 97 Vl~EKPl~~~ea~~l~~~A~~~g~~~~v~~---~yr~~p~vr~~i~~~~~l~~~~~~~~~~i~~~~s~q 162 (372)
T 4gmf_A 97 VIQEHPLHPDDISSLQTLAQEQGCCYWINT---FYPHTRAGRTWLRDAQQLRRCLAKTPPVVHATTSRQ 162 (372)
T ss_dssp EEEESCCCHHHHHHHHHHHHHHTCCEEEEC---SGGGSHHHHHHHHHHHHHHHHHTSCCSEEEEEECTT
T ss_pred EEEecCCCHHHHHHHHHHHHHcCCEEEEcC---cccCCHHHHHHHHHHHHHHhhccCCceEEEEEeccc
Confidence 48999998764 6677888888877653 223556789999999988653 4445555544443
No 15
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=24.14 E-value=1.1e+02 Score=23.07 Aligned_cols=44 Identities=5% Similarity=0.029 Sum_probs=34.0
Q ss_pred HHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEcc
Q 029356 73 FGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAE 120 (194)
Q Consensus 73 l~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~ 120 (194)
++.++.-++|+|.++-.|+.. ..-++.+++.|-++||.|++...
T Consensus 52 l~~~~~gd~lvv~~ldRl~R~----~~~~~~~~~~l~~~gv~l~~~~~ 95 (183)
T 1gdt_A 52 RMKVEEGDVILVKKLDRLGRD----TADMIQLIKEFDAQGVSIRFIDD 95 (183)
T ss_dssp HHHCCTTCEEEESSGGGTCSS----HHHHHHHHHHHHHTTCEEEEGGG
T ss_pred HhcCCCCCEEEEEecccccCC----HHHHHHHHHHHHHCCCEEEEecC
Confidence 444555689999999999853 44577888999999999987654
No 16
>2gm5_A Transposon gamma-delta resolvase; site specific recombination, recombin; 2.10A {Escherichia coli} PDB: 2rsl_A 1gdr_A 1ght_A 1hx7_A
Probab=20.74 E-value=1.6e+02 Score=21.39 Aligned_cols=42 Identities=7% Similarity=0.052 Sum_probs=32.3
Q ss_pred HHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEc
Q 029356 74 GLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTA 119 (194)
Q Consensus 74 ~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a 119 (194)
+-++.-++|+|..+-+|+.. ..-++.+++.|-++||+|++..
T Consensus 52 ~~~~~gd~lvV~~ldRL~R~----~~d~~~~~~~l~~~gv~l~~~~ 93 (139)
T 2gm5_A 52 MKVKEGDVILVKKLDHLGRD----TADMIQLIKEFDAQGVSIRFID 93 (139)
T ss_dssp HHCCTTCEEEESSGGGTSSS----HHHHHHHHHHHHHTTCEEEETT
T ss_pred HHHHCCCEEEEEecccccCC----HHHHHHHHHHHHhCCCEEEEec
Confidence 33444589999999999853 3446788899999999998754
Done!