Query 029357
Match_columns 194
No_of_seqs 144 out of 625
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 11:37:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029357.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029357hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2234 Predicted UDP-galactos 100.0 3.7E-37 8E-42 271.0 15.2 146 46-191 15-164 (345)
2 PF04142 Nuc_sug_transp: Nucle 99.9 1.2E-24 2.7E-29 185.3 7.4 80 114-193 12-91 (244)
3 KOG3912 Predicted integral mem 99.7 3.4E-17 7.5E-22 141.5 12.9 142 48-192 5-159 (372)
4 TIGR00803 nst UDP-galactose tr 99.1 1.2E-10 2.6E-15 96.8 4.7 71 121-192 1-71 (222)
5 PF06027 DUF914: Eukaryotic pr 98.9 2.6E-08 5.6E-13 88.9 14.4 76 117-192 77-152 (334)
6 PF08449 UAA: UAA transporter 98.9 4.1E-08 8.8E-13 85.5 13.7 125 58-192 12-137 (303)
7 PTZ00343 triose or hexose phos 98.8 2.6E-07 5.7E-12 82.4 16.9 128 55-190 58-185 (350)
8 PF00892 EamA: EamA-like trans 98.4 4.7E-06 1E-10 61.3 10.2 120 59-189 4-124 (126)
9 TIGR00817 tpt Tpt phosphate/ph 98.3 1.6E-05 3.5E-10 68.7 14.3 127 53-189 9-135 (302)
10 PF03151 TPT: Triose-phosphate 98.3 2.3E-05 4.9E-10 60.7 13.7 135 54-190 8-152 (153)
11 PRK15430 putative chlorampheni 98.3 2.4E-05 5.1E-10 67.9 13.7 134 48-189 10-143 (296)
12 PF13536 EmrE: Multidrug resis 98.1 1.5E-05 3.3E-10 59.7 8.4 66 126-192 41-107 (113)
13 TIGR00688 rarD rarD protein. T 98.1 0.00011 2.5E-09 61.9 13.3 133 50-189 6-140 (256)
14 PLN00411 nodulin MtN21 family 97.9 0.00028 6E-09 63.5 13.4 132 48-189 15-154 (358)
15 COG2510 Predicted membrane pro 97.8 0.00028 6.1E-09 55.2 10.3 135 48-191 4-139 (140)
16 KOG1444 Nucleotide-sugar trans 97.8 0.00062 1.3E-08 60.3 13.5 137 45-189 11-147 (314)
17 PRK11272 putative DMT superfam 97.6 0.0025 5.5E-08 55.0 14.8 129 48-190 10-140 (292)
18 TIGR00950 2A78 Carboxylate/Ami 97.6 0.00025 5.5E-09 59.2 8.1 71 120-190 47-118 (260)
19 PF08449 UAA: UAA transporter 97.6 0.0021 4.5E-08 55.9 13.4 143 47-191 155-297 (303)
20 PTZ00343 triose or hexose phos 97.6 0.00024 5.2E-09 63.4 7.6 69 123-191 280-348 (350)
21 TIGR00950 2A78 Carboxylate/Ami 97.6 0.0052 1.1E-07 51.3 15.3 71 117-187 189-260 (260)
22 PRK15051 4-amino-4-deoxy-L-ara 97.5 0.00069 1.5E-08 51.2 8.5 65 127-191 45-109 (111)
23 COG0697 RhaT Permeases of the 97.5 0.011 2.3E-07 49.3 15.7 72 121-192 72-144 (292)
24 PRK10650 multidrug efflux syst 97.4 0.001 2.2E-08 50.5 8.3 73 119-191 35-108 (109)
25 PRK10452 multidrug efflux syst 97.4 0.0011 2.5E-08 51.1 8.6 70 123-192 34-104 (120)
26 PRK11453 O-acetylserine/cystei 97.4 0.0092 2E-07 51.7 14.7 123 49-189 7-130 (299)
27 PRK11431 multidrug efflux syst 97.4 0.0014 3.1E-08 49.3 8.3 72 122-193 32-104 (105)
28 PRK09541 emrE multidrug efflux 97.3 0.0017 3.6E-08 49.3 8.1 71 122-192 33-104 (110)
29 TIGR00817 tpt Tpt phosphate/ph 97.2 0.00053 1.2E-08 59.3 4.7 68 124-191 225-293 (302)
30 COG2076 EmrE Membrane transpor 97.2 0.0027 5.9E-08 48.0 7.8 73 121-193 32-105 (106)
31 TIGR03340 phn_DUF6 phosphonate 97.1 0.0022 4.7E-08 55.1 8.0 66 125-190 69-134 (281)
32 TIGR00776 RhaT RhaT L-rhamnose 97.1 0.011 2.3E-07 51.5 11.8 74 119-192 211-289 (290)
33 PF10639 UPF0546: Uncharacteri 96.8 0.0026 5.7E-08 48.6 5.3 69 121-189 43-112 (113)
34 COG5006 rhtA Threonine/homoser 96.8 0.0042 9.1E-08 53.9 7.0 58 132-189 223-280 (292)
35 PF05653 Mg_trans_NIPA: Magnes 96.8 0.0027 5.9E-08 55.9 5.9 68 120-189 53-120 (300)
36 PRK11689 aromatic amino acid e 96.7 0.06 1.3E-06 46.5 13.5 125 48-189 6-135 (295)
37 KOG1581 UDP-galactose transpor 96.7 0.02 4.3E-07 50.8 10.2 110 73-191 45-155 (327)
38 PRK02971 4-amino-4-deoxy-L-ara 96.6 0.018 3.9E-07 44.8 8.5 68 126-193 55-124 (129)
39 PLN00411 nodulin MtN21 family 96.5 0.16 3.4E-06 45.9 15.2 58 135-192 272-329 (358)
40 PRK11689 aromatic amino acid e 96.5 0.13 2.8E-06 44.5 14.2 65 127-191 223-287 (295)
41 KOG1441 Glucose-6-phosphate/ph 96.5 0.0052 1.1E-07 54.7 5.5 69 120-188 236-304 (316)
42 PRK11272 putative DMT superfam 96.3 0.013 2.8E-07 50.6 7.0 62 130-191 224-285 (292)
43 TIGR00803 nst UDP-galactose tr 96.1 0.0069 1.5E-07 50.1 3.9 67 122-188 155-221 (222)
44 KOG1441 Glucose-6-phosphate/ph 96.1 0.0057 1.2E-07 54.4 3.5 70 121-190 85-154 (316)
45 TIGR03340 phn_DUF6 phosphonate 96.1 0.0098 2.1E-07 51.0 4.9 63 126-188 218-280 (281)
46 PRK10532 threonine and homoser 96.0 0.03 6.6E-07 48.4 7.9 60 130-189 220-279 (293)
47 PF00893 Multi_Drug_Res: Small 96.0 0.033 7.2E-07 40.6 6.8 61 122-182 32-93 (93)
48 PRK11453 O-acetylserine/cystei 95.7 0.05 1.1E-06 47.1 7.9 62 131-192 227-288 (299)
49 COG5070 VRG4 Nucleotide-sugar 95.6 0.12 2.7E-06 44.4 9.5 125 56-189 12-138 (309)
50 PRK10532 threonine and homoser 95.5 0.5 1.1E-05 40.8 13.3 125 45-189 11-135 (293)
51 PF06800 Sugar_transport: Suga 95.4 0.31 6.6E-06 42.6 11.6 128 45-188 137-268 (269)
52 TIGR00776 RhaT RhaT L-rhamnose 95.3 0.44 9.6E-06 41.3 12.4 68 123-190 63-135 (290)
53 PRK15430 putative chlorampheni 94.5 0.16 3.4E-06 43.9 7.3 61 131-191 225-285 (296)
54 COG0697 RhaT Permeases of the 94.4 0.22 4.8E-06 41.3 7.9 74 118-191 213-287 (292)
55 KOG1443 Predicted integral mem 93.8 0.28 6E-06 43.9 7.5 142 45-190 11-155 (349)
56 KOG1580 UDP-galactose transpor 93.3 0.11 2.5E-06 45.0 4.1 66 123-188 245-310 (337)
57 KOG1581 UDP-galactose transpor 92.2 1.2 2.6E-05 39.7 9.1 114 73-188 197-310 (327)
58 KOG1583 UDP-N-acetylglucosamin 90.0 0.085 1.8E-06 46.5 -0.2 71 121-191 66-137 (330)
59 COG2962 RarD Predicted permeas 89.8 1.3 2.8E-05 39.2 6.9 74 112-188 65-141 (293)
60 PF06800 Sugar_transport: Suga 88.7 3 6.5E-05 36.4 8.4 110 72-192 9-123 (269)
61 KOG4510 Permease of the drug/m 88.7 0.33 7.2E-06 42.8 2.5 64 126-189 104-167 (346)
62 KOG1580 UDP-galactose transpor 88.1 0.84 1.8E-05 39.7 4.5 73 120-192 86-158 (337)
63 KOG2765 Predicted membrane pro 88.1 0.93 2E-05 41.5 5.0 71 122-192 162-232 (416)
64 PF04657 DUF606: Protein of un 82.3 21 0.00047 27.7 11.7 121 54-188 13-138 (138)
65 KOG2922 Uncharacterized conser 78.7 1.2 2.7E-05 39.8 1.8 63 127-189 72-134 (335)
66 COG3238 Uncharacterized protei 77.6 33 0.00071 27.5 9.5 127 53-192 16-147 (150)
67 PF06027 DUF914: Eukaryotic pr 74.7 64 0.0014 29.0 12.9 67 126-192 236-306 (334)
68 PRK13499 rhamnose-proton sympo 69.6 87 0.0019 28.3 14.4 76 116-192 257-342 (345)
69 KOG4314 Predicted carbohydrate 63.5 6.9 0.00015 33.4 2.8 117 53-191 8-125 (290)
70 PF11628 TCR_zetazeta: T-cell 58.8 26 0.00056 21.0 3.9 29 125-169 2-30 (33)
71 COG3169 Uncharacterized protei 57.3 50 0.0011 24.9 6.1 30 159-188 83-112 (116)
72 PF04342 DUF486: Protein of un 54.5 19 0.00041 27.3 3.5 32 157-188 74-105 (108)
73 PRK13108 prolipoprotein diacyl 53.1 46 0.00099 31.3 6.6 64 124-189 194-272 (460)
74 COG4975 GlcU Putative glucose 46.2 7.5 0.00016 34.0 0.3 73 117-189 207-283 (288)
75 KOG1582 UDP-galactose transpor 45.2 99 0.0021 27.7 7.0 141 40-192 37-179 (367)
76 KOG4831 Unnamed protein [Funct 44.7 22 0.00048 27.2 2.6 69 121-189 54-123 (125)
77 PF01098 FTSW_RODA_SPOVE: Cell 41.8 43 0.00094 29.8 4.5 53 83-136 103-155 (358)
78 KOG1443 Predicted integral mem 41.6 47 0.001 30.0 4.5 73 117-189 241-313 (349)
79 KOG1583 UDP-N-acetylglucosamin 38.9 1.4E+02 0.003 26.7 7.0 68 122-189 236-312 (330)
80 KOG1442 GDP-fucose transporter 38.7 12 0.00026 33.3 0.4 67 116-185 102-168 (347)
81 KOG2766 Predicted membrane pro 37.6 1.3 2.9E-05 38.9 -5.6 71 121-191 80-150 (336)
82 PF04279 IspA: Intracellular s 34.1 1.5E+02 0.0032 24.1 6.1 26 161-186 37-63 (176)
83 PF04142 Nuc_sug_transp: Nucle 31.1 3.3E+02 0.0071 23.0 13.9 57 122-178 184-240 (244)
84 KOG4510 Permease of the drug/m 29.3 2.2E+02 0.0049 25.5 6.7 74 114-187 248-321 (346)
85 TIGR02230 ATPase_gene1 F0F1-AT 25.2 1.9E+02 0.0041 21.6 4.8 32 157-188 56-87 (100)
86 COG2059 ChrA Chromate transpor 24.9 3E+02 0.0065 22.8 6.5 64 119-183 84-150 (195)
87 PF04241 DUF423: Protein of un 24.4 2.4E+02 0.0053 20.1 5.2 41 145-189 25-65 (89)
88 PF05915 DUF872: Eukaryotic pr 24.3 3.2E+02 0.0069 20.7 7.7 17 75-91 72-88 (115)
89 COG0772 FtsW Bacterial cell di 21.0 3.2E+02 0.0069 25.0 6.4 82 84-184 119-201 (381)
90 TIGR00997 ispZ intracellular s 21.0 1.6E+02 0.0034 24.2 4.0 28 161-188 37-65 (178)
No 1
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-37 Score=271.02 Aligned_cols=146 Identities=29% Similarity=0.440 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhh----hCCCCCcccccccchhhc
Q 029357 46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNH----EGVTDDNRLSTTLDEVIV 121 (194)
Q Consensus 46 ~k~~~l~~Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~----~~~~~~~~~~~~~~~~l~ 121 (194)
.|+++++++++|+++.++++||++++++++|.++++||++|++|+++|+++.+++.++ .....+++....|+|.++
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 9999999999999999999999998889999999999999999999999998654322 000111233356789999
Q ss_pred ccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357 122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 191 (194)
Q Consensus 122 ~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql 191 (194)
++|||++|++|||++|++++|+||+|||+++|+||++||+|++++|+||+|++||.|+++|++|+.++|+
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~ 164 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQL 164 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999994
No 2
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.91 E-value=1.2e-24 Score=185.35 Aligned_cols=80 Identities=33% Similarity=0.626 Sum_probs=77.5
Q ss_pred cccchhhcccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccccC
Q 029357 114 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS 193 (194)
Q Consensus 114 ~~~~~~l~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~~ 193 (194)
..+|+.+++++||++|++||||+|++++++||++|||++|+||++||+|++++||||+|++||+|++++++|++++|.++
T Consensus 12 ~~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~ 91 (244)
T PF04142_consen 12 KSPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSS 91 (244)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCC
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999875
No 3
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.73 E-value=3.4e-17 Score=141.54 Aligned_cols=142 Identities=19% Similarity=0.266 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHhh---cCC----CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCc---c-cccc-
Q 029357 48 SVVTLALTVLTSSQAILIVWSK---RAG----KYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDN---R-LSTT- 115 (194)
Q Consensus 48 ~~~l~~Lvl~~~~~~il~k~Sr---~~~----~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~---~-~~~~- 115 (194)
.++-+.++..++.++++.||.. .+| ++|+.+++.+|++|++++.+-..+. .+..+..... . ..+.
T Consensus 5 v~ls~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir---~~sn~~g~~s~~~~ilsq~~ 81 (372)
T KOG3912|consen 5 VFLSLIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIR---LRSNGQGVSSDLDSILSQDS 81 (372)
T ss_pred hhhhhhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHH---HhhcCCCccccccccccccc
Confidence 3444567888999999999963 222 7899999999999999554433332 2222222111 1 1111
Q ss_pred -cchhhcccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357 116 -LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (194)
Q Consensus 116 -~~~~l~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~ 192 (194)
+-+-..+..||+|+.....|+|++|.+..|+.|||+++.-|++||+|++.+|||++..+||+++...++|+++|...
T Consensus 82 ~pf~p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 82 SPFNPVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred CCCCcceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 22233455599999999999999999999999999999999999999999999999999999999999999998764
No 4
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.07 E-value=1.2e-10 Score=96.78 Aligned_cols=71 Identities=25% Similarity=0.326 Sum_probs=68.4
Q ss_pred cccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357 121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (194)
Q Consensus 121 ~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~ 192 (194)
++++||.+|+.||++.++++.++++..+++. |.|+++||+++..+++|+++..||.++.++..|+..+|.+
T Consensus 1 ~isvPa~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~ 71 (222)
T TIGR00803 1 KLSVPIHIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMV 71 (222)
T ss_pred CccccchHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecC
Confidence 4789999999999999999999999999999 9999999999999999999999999999999999988865
No 5
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.94 E-value=2.6e-08 Score=88.88 Aligned_cols=76 Identities=20% Similarity=0.221 Sum_probs=71.9
Q ss_pred chhhcccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357 117 DEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (194)
Q Consensus 117 ~~~l~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~ 192 (194)
++.+++.+.|++++..|.+...|+++.+.+..|++.+.-|+++.++|+++||+|+++.||++.++.++|++++-.+
T Consensus 77 ~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s 152 (334)
T PF06027_consen 77 RPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS 152 (334)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee
Confidence 5567899999999999999999999999999999999999999999999999999999999999999999987553
No 6
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.89 E-value=4.1e-08 Score=85.49 Aligned_cols=125 Identities=18% Similarity=0.204 Sum_probs=92.3
Q ss_pred HhHHHHHHHH-hhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchhHHHHHHHHHH
Q 029357 58 TSSQAILIVW-SKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQ 136 (194)
Q Consensus 58 ~~~~~il~k~-Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA~lY~iqN~L~ 136 (194)
.++..++... .+..... ..+....++..+.-.+++...... .. ... ........++++++++.+.+.+.
T Consensus 12 ~~~~g~~qE~i~~~~~~~-~~~~~lt~~q~~~~~~~~~~~~~~---~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF08449_consen 12 CCSYGILQEKIMTTPYGS-PFPLFLTFVQFAFNALFSFILLSL---FK-FPK-----SRKIPLKKYAILSFLFFLASVLS 81 (303)
T ss_pred HHHHHHHHHHHHcCCCCC-cccHHHHHHHHHHHHHHHHHHHHh---cc-ccC-----CCcChHHHHHHHHHHHHHHHHHH
Confidence 3345555554 3322111 246667777777655555554422 11 000 11122456899999999999999
Q ss_pred HHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357 137 YYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (194)
Q Consensus 137 f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~ 192 (194)
+.+++++|.+++++++..|++.|.+++++++|||.++.||++.+++++|+++.-+.
T Consensus 82 ~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~ 137 (303)
T PF08449_consen 82 NAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLS 137 (303)
T ss_pred HHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeec
Confidence 99999999999999999999999999999999999999999999999999987653
No 7
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.83 E-value=2.6e-07 Score=82.38 Aligned_cols=128 Identities=13% Similarity=0.020 Sum_probs=89.7
Q ss_pred HHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchhHHHHHHHH
Q 029357 55 TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNL 134 (194)
Q Consensus 55 vl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA~lY~iqN~ 134 (194)
-..+....+..|+--+. .+| |.+...+--++-.+++.++. . .+....++.....++...+...++++...+.
T Consensus 58 y~~s~~~~~~nK~vl~~--~~~-P~~l~~~~~~~~~l~~~~~~----~-~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~ 129 (350)
T PTZ00343 58 YALNVLYVVDNKLALNM--LPL-PWTISSLQLFVGWLFALLYW----A-TGFRKIPRIKSLKLFLKNFLPQGLCHLFVHF 129 (350)
T ss_pred HHHHHHHHHHHHHHHHh--CCh-hHHHHHHHHHHHHHHHHHHH----H-hCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44466666767764322 232 55555555555444433322 1 1111112221111234467778889998888
Q ss_pred HHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcc
Q 029357 135 LQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ 190 (194)
Q Consensus 135 L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvq 190 (194)
..++++++.+++.+|++.-+.-++|++++++++|+|+++++|.++++.++|+++.-
T Consensus 130 ~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 130 GAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 89999999999999999999999999999999999999999999999999999863
No 8
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.39 E-value=4.7e-06 Score=61.31 Aligned_cols=120 Identities=17% Similarity=0.116 Sum_probs=87.3
Q ss_pred hHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchhHH-HHHHHHHHH
Q 029357 59 SSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL-YLVKNLLQY 137 (194)
Q Consensus 59 ~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA~l-Y~iqN~L~f 137 (194)
+...++.|..-+ ++++...++...+.-.+ .+.+... .+... ....++++.....+-+++ -.+.+.+.+
T Consensus 4 a~~~~~~k~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (126)
T PF00892_consen 4 AIYSVFSKKLLK----KISPLSITFWRFLIAGI-LLILLLI--LGRKP----FKNLSPRQWLWLLFLGLLGTALAYLLYF 72 (126)
T ss_pred eeHHHHHHHHhc----cCCHHHHHHHHHHHHHH-HHHHHHh--hcccc----ccCCChhhhhhhhHhhccceehHHHHHH
Confidence 334455555331 26677777777777544 3333221 12111 111334455566777777 488999999
Q ss_pred HHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357 138 YIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (194)
Q Consensus 138 ~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv 189 (194)
.++++.+++.-.++.++..+++++++++++|++++..||.++++.+.|+.++
T Consensus 73 ~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 73 YALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999875
No 9
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.35 E-value=1.6e-05 Score=68.74 Aligned_cols=127 Identities=12% Similarity=0.150 Sum_probs=88.3
Q ss_pred HHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchhHHHHHH
Q 029357 53 ALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVK 132 (194)
Q Consensus 53 ~Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA~lY~iq 132 (194)
+--..+...++..|+--++ .+| |.+..++--..-.+++.+. ++ .+.....+ .++++...+..-+++.++.
T Consensus 9 ~w~~~~~~~~~~NK~~l~~--~~~-P~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~--~~~~~~~~~~~~g~~~~~~ 78 (302)
T TIGR00817 9 LWYFLNVYFNIYNKKLLNV--FPY-PYFKTLISLAVGSLYCLLS----WS-SGLPKRLK--ISSALLKLLLPVAIVHTIG 78 (302)
T ss_pred HHHHHHHHHHHHHHHHHhh--CCh-hHHHHHHHHHHHHHHHHHH----HH-hCCCCCCC--CCHHHHHHHHHHHHHHHHH
Confidence 3455577777778875432 121 3334443333322222211 11 11111111 2345556677777888899
Q ss_pred HHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357 133 NLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (194)
Q Consensus 133 N~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv 189 (194)
+.+.+.++.+.+++.+|++..+..++|++++++++|+|+++++|.++++.++|+++.
T Consensus 79 ~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 79 HVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999865
No 10
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.35 E-value=2.3e-05 Score=60.69 Aligned_cols=135 Identities=12% Similarity=0.160 Sum_probs=98.6
Q ss_pred HHHHHhHHHHHHHHh-hc--CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC--ccccc-----ccchhhccc
Q 029357 54 LTVLTSSQAILIVWS-KR--AGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDD--NRLST-----TLDEVIVYP 123 (194)
Q Consensus 54 Lvl~~~~~~il~k~S-r~--~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~--~~~~~-----~~~~~l~~~ 123 (194)
=++..+...+++|.- ++ .+++..++-...+..-..-+++.+..... .|+..... ..... ..+....+.
T Consensus 8 s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (153)
T PF03151_consen 8 SSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFL--LEGPQLSSFFSEIFGEELSSDPNFIFLLI 85 (153)
T ss_pred HHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHH--HhhhhhhhHHHHhhhhhhcchHHHHHHHH
Confidence 355566666777653 32 23466777777777777766655554432 23221111 00111 223455678
Q ss_pred chhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcc
Q 029357 124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ 190 (194)
Q Consensus 124 vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvq 190 (194)
+.+++..+.|...|..+.+..|.+++++.+.|.+.+-++++++++.+++..||.++.+.++|+.+-+
T Consensus 86 ~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 86 LSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 8899999999999999999999999999999999999999999999999999999999999997643
No 11
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.28 E-value=2.4e-05 Score=67.86 Aligned_cols=134 Identities=16% Similarity=0.097 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchhH
Q 029357 48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV 127 (194)
Q Consensus 48 ~~~l~~Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA~ 127 (194)
.+..++-++.++...+..|+.. ++.+...++.--.+=.++-+.+.. .++ +.....+...++++......-++
T Consensus 10 ~~~~l~a~~~wg~~~~~~k~~~-----~~~~~~~~~~R~~~a~~~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~ 81 (296)
T PRK15430 10 VLLALAAYFIWGIAPAYFKLIY-----YVPADEILTHRVIWSFFFMVVLMS--ICR-QWSYLKTLIQTPQKIFMLAVSAV 81 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHHHHHH--HHc-cHHHHHHHHcCHHHHHHHHHHHH
Confidence 3444445667888888888742 255666665554442221111111 111 10000000113444433456678
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357 128 LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (194)
Q Consensus 128 lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv 189 (194)
.+.+++.+.|.++++++++.=.++..+--+++++++++++|+|++++||.++++-++|+.++
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li 143 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQ 143 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999874
No 12
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.14 E-value=1.5e-05 Score=59.72 Aligned_cols=66 Identities=27% Similarity=0.392 Sum_probs=59.7
Q ss_pred hHHH-HHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357 126 AVLY-LVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (194)
Q Consensus 126 A~lY-~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~ 192 (194)
+++. .+++.+.+.|+++.++ .-.++.++-.+++++++++++|+|++.++|.++.+.++|++++..+
T Consensus 41 g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~ 107 (113)
T PF13536_consen 41 GLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWS 107 (113)
T ss_pred HHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 4444 4889999999999995 7779999999999999999999999999999999999999998664
No 13
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.07 E-value=0.00011 Score=61.88 Aligned_cols=133 Identities=15% Similarity=0.065 Sum_probs=92.3
Q ss_pred HHHHHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccc-cccch-hhcccchhH
Q 029357 50 VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS-TTLDE-VIVYPIPAV 127 (194)
Q Consensus 50 ~l~~Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~-~~~~~-~l~~~vPA~ 127 (194)
...+-++.++...+..|+-. ..++...++.=-++=.++-+.+.. .+++.....++.. ..+++ .....+-++
T Consensus 6 ~~i~a~~~wg~~~~~~k~~~-----~~~~~~i~~~R~~~a~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 78 (256)
T TIGR00688 6 VSLLASFLFGYMYYYSKLLK-----PLPATDILGHRMIWSFPFMLLSVT--LFRQWAALIERLKRIQKRPLILSLLLCGL 78 (256)
T ss_pred HHHHHHHHHHHHHHHHHHhc-----cCCHHHHHHHHHHHHHHHHHHHHH--HHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence 34445667888999999731 267777777666552211111111 1111100000111 11122 334677788
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357 128 LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (194)
Q Consensus 128 lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv 189 (194)
+..+.+.+.|.++++++++.=.++..+--+++++++++++|+|++++||.++.+-++|++++
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li 140 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN 140 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999865
No 14
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.91 E-value=0.00028 Score=63.54 Aligned_cols=132 Identities=14% Similarity=0.077 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHH-HH-HhhhCCCCCcccccccchhhcccch
Q 029357 48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALA-RI-WNHEGVTDDNRLSTTLDEVIVYPIP 125 (194)
Q Consensus 48 ~~~l~~Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~-~~-~~~~~~~~~~~~~~~~~~~l~~~vP 125 (194)
++.+++.-+.+....++.|..-..|-.++.. . ..-+.++.+++. +. ++++... .+ ..++++...+++-
T Consensus 15 ~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~---~----~~R~~iA~l~Ll~~~~~~~~~~~-~~--~~~~~~~~~l~l~ 84 (358)
T PLN00411 15 LTAMLATETSVVGISTLFKVATSKGLNIYPF---L----GYSYLLASLLLLPSLFFTNRSRS-LP--PLSVSILSKIGLL 84 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCccHH---H----HHHHHHHHHHHHHHHHHHHHhcc-cC--cchHHHHHHHHHH
Confidence 4555555555666777777765555444432 2 334433332221 11 2222111 01 1235566667777
Q ss_pred hHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHH------HhCcccHHHHHHHHHHHHhhhhc
Q 029357 126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRII------LKKKLSEIQWAAFILLCCGCTTA 189 (194)
Q Consensus 126 A~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~------L~rkLs~~QW~aL~lL~~Gv~lv 189 (194)
+++-.+.+.+.|.++++++|+.=.++.++--++|+++++++ +|+|++..||+++++-++|+.++
T Consensus 85 g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll 154 (358)
T PLN00411 85 GFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVV 154 (358)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHH
Confidence 77666677799999999999999999999999999999999 69999999999999999998864
No 15
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.82 E-value=0.00028 Score=55.23 Aligned_cols=135 Identities=13% Similarity=0.121 Sum_probs=87.5
Q ss_pred HHHHHHH-HHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchh
Q 029357 48 SVVTLAL-TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA 126 (194)
Q Consensus 48 ~~~l~~L-vl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA 126 (194)
++..++| .+..+..++.-|.--. .-++..+.++--++=.+++..+.+. ..+.+.... -++|.++-+.+-+
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~----~vdp~~At~IRtiVi~~~l~~v~~~---~g~~~~~~~--~~~k~~lflilSG 74 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLE----GVDPDFATTIRTIVILIFLLIVLLV---TGNWQAGGE--IGPKSWLFLILSG 74 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc----ccCccHHHHHHHHHHHHHHHHHHHh---cCceecccc--cCcceehhhhHHH
Confidence 3444444 5566667777776421 1233333333333333344444321 111111111 2345555455555
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357 127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 191 (194)
Q Consensus 127 ~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql 191 (194)
+.=.+.-.++|.|+++=+++---=+..+....+++|++++||.++|..||+++.+.++|++++-+
T Consensus 75 la~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 75 LAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 66677778889999999888777788889999999999999999999999999999999988754
No 16
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.00062 Score=60.28 Aligned_cols=137 Identities=16% Similarity=0.233 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccc
Q 029357 45 KRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPI 124 (194)
Q Consensus 45 ~~k~~~l~~Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~v 124 (194)
....++-+.+++...+.+++.|+--+ +++|+......+.+-+=.++.+.+ .+.-+.-..+. .+++...++-.
T Consensus 11 ~~~l~sa~~Y~~sS~lm~vvNK~vls--~y~f~~~l~l~~~Q~l~s~~~v~~----lk~~~lv~~~~--l~~~~~kk~~P 82 (314)
T KOG1444|consen 11 SSPLLSALFYCLSSILMTVVNKIVLS--SYNFPMGLLLMLLQSLASVLVVLV----LKRLGLVNFRP--LDLRTAKKWFP 82 (314)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHHHHH----HHHhceeecCC--cChHHHHHHcc
Confidence 34466666788888888888888543 377877766665665532222222 23333322222 23566667777
Q ss_pred hhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357 125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (194)
Q Consensus 125 PA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv 189 (194)
++++|...=.----++.+++-++|-++++.-|+.||+.=+.++|++.+..-|.|+++..+|....
T Consensus 83 ~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~ 147 (314)
T KOG1444|consen 83 VSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAA 147 (314)
T ss_pred HHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhh
Confidence 88888876666678899999999999999999999999999999999999999999999887654
No 17
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.65 E-value=0.0025 Score=55.00 Aligned_cols=129 Identities=15% Similarity=0.066 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchhH
Q 029357 48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV 127 (194)
Q Consensus 48 ~~~l~~Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA~ 127 (194)
.+.+++.++.+++..+.+|+.-.+ .++...+++=-++-.++-+.+. ..+ +.+. ...++.....+-+.
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~----~~p~~~~~~R~~~a~l~ll~~~---~~~-~~~~-----~~~~~~~~~~~~g~ 76 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVES----WPPLMMAGVRFLIAGILLLAFL---LLR-GHPL-----PTLRQWLNAALIGL 76 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHH---HHh-CCCC-----CcHHHHHHHHHHHH
Confidence 455667788999999999987532 4555555544333211111111 111 1110 11233333444444
Q ss_pred H-HHHHHHHHHHHH-HhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcc
Q 029357 128 L-YLVKNLLQYYIF-AYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ 190 (194)
Q Consensus 128 l-Y~iqN~L~f~al-~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvq 190 (194)
+ ..+.+.+.|.+. .+.+++.=.++..+--+++++++.+ +|+|++++||.++++-++|+.++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~ 140 (292)
T PRK11272 77 LLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLN 140 (292)
T ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHh
Confidence 4 456788889998 9999998899999999999999985 799999999999999999998864
No 18
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.63 E-value=0.00025 Score=59.25 Aligned_cols=71 Identities=13% Similarity=0.058 Sum_probs=63.6
Q ss_pred hcccchhH-HHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcc
Q 029357 120 IVYPIPAV-LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ 190 (194)
Q Consensus 120 l~~~vPA~-lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvq 190 (194)
..+.+-+. ...+.+.+.|.++++++++.=.++.++.-++|++++.+++|+|++++||+++.+-++|+.++.
T Consensus 47 ~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~ 118 (260)
T TIGR00950 47 LRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLL 118 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhc
Confidence 34556664 568888999999999999999999999999999999999999999999999999999998864
No 19
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.58 E-value=0.0021 Score=55.94 Aligned_cols=143 Identities=16% Similarity=0.141 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchh
Q 029357 47 KSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA 126 (194)
Q Consensus 47 k~~~l~~Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA 126 (194)
..+++++-.+..+.+.+..+.... +++-++.-.++.+.+.-+++.++........+..+..+-..+.+.......+=+
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~--~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s 232 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFK--KYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFS 232 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHH
Confidence 566666655666677676665321 233345777888888877766665532111111111011112233233344445
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357 127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 191 (194)
Q Consensus 127 ~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql 191 (194)
++-++..+..|...+..+|.+..+..-+|-+.|-++|+++.+++++..||+++++.+.|..+-..
T Consensus 233 ~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~ 297 (303)
T PF08449_consen 233 LTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY 297 (303)
T ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence 55555556667778999999999999999999999999999999999999999999999987554
No 20
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.58 E-value=0.00024 Score=63.43 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=64.7
Q ss_pred cchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357 123 PIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 191 (194)
Q Consensus 123 ~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql 191 (194)
..-++.|.++|...|.++.+++|.++.+...+|-+++.++++++++.+++..||++..+.++|+.+.++
T Consensus 280 ~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~ 348 (350)
T PTZ00343 280 FFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSL 348 (350)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhh
Confidence 334789999999999999999999999999999999999999999999999999999999999988664
No 21
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.58 E-value=0.0052 Score=51.32 Aligned_cols=71 Identities=17% Similarity=0.025 Sum_probs=61.0
Q ss_pred chhhcccchhHH-HHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhh
Q 029357 117 DEVIVYPIPAVL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCT 187 (194)
Q Consensus 117 ~~~l~~~vPA~l-Y~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~ 187 (194)
++......-+++ ..+...+.+.+++++++++-.++..+..+++++++++++|.+++..||.+..+.++|++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 189 LQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 333334445544 56788889999999999999999999999999999999999999999999999999974
No 22
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.53 E-value=0.00069 Score=51.24 Aligned_cols=65 Identities=11% Similarity=0.084 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357 127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 191 (194)
Q Consensus 127 ~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql 191 (194)
++|.+...+.-.+++++|.+.=..+.++-.+.+++++++++|.+++.+||+++.+.++|++++..
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 67888888999999999988555555599999999999999999999999999999999988653
No 23
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.46 E-value=0.011 Score=49.32 Aligned_cols=72 Identities=19% Similarity=0.238 Sum_probs=64.5
Q ss_pred cccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHH-HHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357 121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYR-IILKKKLSEIQWAAFILLCCGCTTAQLN 192 (194)
Q Consensus 121 ~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~-l~L~rkLs~~QW~aL~lL~~Gv~lvql~ 192 (194)
....-.+...+.+.+.|.++++++++.-.++..+-.+.++++++ +++|+|+++.+|.++++.+.|+.++-.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~ 144 (292)
T COG0697 72 LLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLG 144 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecC
Confidence 45666678888889999999999999999999999999999997 7779999999999999999999987553
No 24
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.43 E-value=0.001 Score=50.53 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=65.5
Q ss_pred hhcccchhHHHHHHHHHHHHHHHhCChH-HHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357 119 VIVYPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 191 (194)
Q Consensus 119 ~l~~~vPA~lY~iqN~L~f~al~~lda~-tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql 191 (194)
.....+--++|.+.-.+.-.+++++|.+ .|-+-...-++.|++.+++++|.+++..||+++.+.+.|++..++
T Consensus 35 ~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lkl 108 (109)
T PRK10650 35 KIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIKL 108 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 3344555788999999999999999966 899999999999999999999999999999999999999998765
No 25
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.42 E-value=0.0011 Score=51.07 Aligned_cols=70 Identities=11% Similarity=0.224 Sum_probs=62.2
Q ss_pred cchhHHHHHHHHHHHHHHHhCChH-HHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357 123 PIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (194)
Q Consensus 123 ~vPA~lY~iqN~L~f~al~~lda~-tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~ 192 (194)
.+--++|.+.=.+...+++++|.+ .|-+....-++.+++.+++++|.+++..||+++.++++|++.+++.
T Consensus 34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 445567777788888999999966 8888889999999999999999999999999999999999998774
No 26
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.37 E-value=0.0092 Score=51.68 Aligned_cols=123 Identities=14% Similarity=0.072 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchhHH
Q 029357 49 VVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL 128 (194)
Q Consensus 49 ~~l~~Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA~l 128 (194)
+..++-++.+++..+.+|..-. ..++...+++==.+ +..++....++.+ ..++.....++ ..
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~----~~~p~~~~~~R~~~----a~~~l~~~~~~~~--------~~~~~~~~~g~--~~ 68 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLH----NMPPLMLAGLRFML----VAFPAIFFVARPK--------VPLNLLLGYGL--TI 68 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHh----cCCHHHHHHHHHHH----HHHHHHHHhcCCC--------CchHHHHHHHH--HH
Confidence 3445567889999999997542 24555555443332 2221111111111 11121111111 12
Q ss_pred HHHHHHHHHHHHHh-CChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357 129 YLVKNLLQYYIFAY-VDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (194)
Q Consensus 129 Y~iqN~L~f~al~~-lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv 189 (194)
+..+..+.|.++.+ ++++.-.++.++-.++|++++++++|+|++++||+++++-++|+.++
T Consensus 69 ~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll 130 (299)
T PRK11453 69 SFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVL 130 (299)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHh
Confidence 33455577888887 78888899999999999999999999999999999999999998865
No 27
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.37 E-value=0.0014 Score=49.33 Aligned_cols=72 Identities=13% Similarity=0.217 Sum_probs=65.2
Q ss_pred ccchhHHHHHHHHHHHHHHHhCChH-HHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccccC
Q 029357 122 YPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS 193 (194)
Q Consensus 122 ~~vPA~lY~iqN~L~f~al~~lda~-tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~~ 193 (194)
..+-.++|.+.=.+.-.+++.+|.+ .|-+-...-++.|++.+++++|.+++..||+++.+.+.|++..++.+
T Consensus 32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~~ 104 (105)
T PRK11431 32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLST 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhccC
Confidence 4455778999999999999999966 89999999999999999999999999999999999999999987643
No 28
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.29 E-value=0.0017 Score=49.30 Aligned_cols=71 Identities=18% Similarity=0.263 Sum_probs=64.0
Q ss_pred ccchhHHHHHHHHHHHHHHHhCChH-HHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357 122 YPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (194)
Q Consensus 122 ~~vPA~lY~iqN~L~f~al~~lda~-tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~ 192 (194)
..+--++|.+.=.+...+++.+|.+ .|-+-...-++.|++.+++++|.+++..||+++.+.++|++..++.
T Consensus 33 ~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3445678888888999999999966 8999999999999999999999999999999999999999998764
No 29
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.16 E-value=0.00053 Score=59.26 Aligned_cols=68 Identities=10% Similarity=0.090 Sum_probs=62.4
Q ss_pred chhH-HHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357 124 IPAV-LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 191 (194)
Q Consensus 124 vPA~-lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql 191 (194)
+.++ +|...|.+.|.++++++|.++.+...+|-++++++++++++.+++..||++..+..+|+.+.+.
T Consensus 225 ~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 225 VAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 4444 7888888889999999999999999999999999999999999999999999999999988764
No 30
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.0027 Score=48.02 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=64.5
Q ss_pred cccchhHHHHHHHHHHHHHHHhCChH-HHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccccC
Q 029357 121 VYPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS 193 (194)
Q Consensus 121 ~~~vPA~lY~iqN~L~f~al~~lda~-tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~~ 193 (194)
...+=.+.|.+.=.+.=.+++++|-+ .|-+-.+.-++.|++..++++|.+++..||+++.++.+|++..++.+
T Consensus 32 ~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 32 PSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence 34445678888888888999999955 89999999999999999999999999999999999999999887653
No 31
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.12 E-value=0.0022 Score=55.05 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcc
Q 029357 125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ 190 (194)
Q Consensus 125 PA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvq 190 (194)
=++..++.+...+.++++.|++.-.++..+..+++++++++++|++++.+||.++.+-++|+.++-
T Consensus 69 ~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~ 134 (281)
T TIGR03340 69 SAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLG 134 (281)
T ss_pred HHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 345688889999999999999999999999999999999999999999999999999999998753
No 32
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.06 E-value=0.011 Score=51.50 Aligned_cols=74 Identities=15% Similarity=0.241 Sum_probs=67.0
Q ss_pred hhcccchhHHHHHHHHHHHHHHH-hCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHH----HHHHHHHHhhhhcccc
Q 029357 119 VIVYPIPAVLYLVKNLLQYYIFA-YVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQW----AAFILLCCGCTTAQLN 192 (194)
Q Consensus 119 ~l~~~vPA~lY~iqN~L~f~al~-~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW----~aL~lL~~Gv~lvql~ 192 (194)
.+...+..++..++|.+.+.+++ ++++++..++.|...+...+++++++|++.+++|+ ++.++...|+.+..+.
T Consensus 211 ~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 211 ILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence 33445578889999999999999 99999999999999999999999999999999999 9999999999987653
No 33
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.83 E-value=0.0026 Score=48.61 Aligned_cols=69 Identities=19% Similarity=0.330 Sum_probs=63.9
Q ss_pred cccchhHHHHHHHHHHHHHHHhCChH-HHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357 121 VYPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (194)
Q Consensus 121 ~~~vPA~lY~iqN~L~f~al~~lda~-tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv 189 (194)
++.+|=++|.....+.|+.+..-|-+ ++=+.+.+-.++|++..+++-++..++..|+++.+.++|+.++
T Consensus 43 ~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 43 KYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 58999999999999999999999966 7778889999999999999999999999999999999999874
No 34
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.82 E-value=0.0042 Score=53.90 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357 132 KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (194)
Q Consensus 132 qN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv 189 (194)
--.|..++++.+++.+|-++..+.-.+.|+-.+++|++++|..||.++.+.+++.+-+
T Consensus 223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~ 280 (292)
T COG5006 223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS 280 (292)
T ss_pred chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence 3467889999999999999999999999999999999999999999999998887743
No 35
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.79 E-value=0.0027 Score=55.89 Aligned_cols=68 Identities=19% Similarity=0.288 Sum_probs=62.6
Q ss_pred hcccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357 120 IVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (194)
Q Consensus 120 l~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv 189 (194)
|..+. +++.+.+.+.++|+.+.|++.-|=+..+-+++.++++..+||+|+++.+|++..+.++|.+++
T Consensus 53 W~~G~--~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~li 120 (300)
T PF05653_consen 53 WWIGL--LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLI 120 (300)
T ss_pred HHHHH--HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheee
Confidence 34443 688999999999999999999999999999999999999999999999999999999998864
No 36
>PRK11689 aromatic amino acid exporter; Provisional
Probab=96.69 E-value=0.06 Score=46.54 Aligned_cols=125 Identities=14% Similarity=0.049 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccch-h
Q 029357 48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP-A 126 (194)
Q Consensus 48 ~~~l~~Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vP-A 126 (194)
++.+++-++.++++-+.+|..-.+ +.|....++- +.++..++.. .... ++..+.++ +..+. +
T Consensus 6 ~l~~l~a~~~Wg~~~~~~k~~~~~----~~P~~~~~~R----~~~a~l~l~~-~~~~-----~~~~~~~~---~~~~~~~ 68 (295)
T PRK11689 6 TLIGLIAILLWSTMVGLIRGVSES----LGPVGGAAMI----YSVSGLLLLL-TVGF-----PRLRQFPK---RYLLAGG 68 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcc----CChHHHHHHH----HHHHHHHHHH-Hccc-----cccccccH---HHHHHHh
Confidence 445555677899999999986422 4444444443 2222222211 1111 01111111 11222 2
Q ss_pred HHHHHHHHHHHHHHH----hCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357 127 VLYLVKNLLQYYIFA----YVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (194)
Q Consensus 127 ~lY~iqN~L~f~al~----~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv 189 (194)
+.+++.+.+.|.++. .+++..=.++..+--+++++++++++|+|++++||.++++-++|+.++
T Consensus 69 l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li 135 (295)
T PRK11689 69 LLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWV 135 (295)
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhhe
Confidence 345566666777764 467777788888999999999999999999999999999999999775
No 37
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.66 E-value=0.02 Score=50.81 Aligned_cols=110 Identities=16% Similarity=0.278 Sum_probs=88.3
Q ss_pred CCcc-hHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchhHHHHHHHHHHHHHHHhCChHHHHHH
Q 029357 73 KYEY-SVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQIL 151 (194)
Q Consensus 73 ~~~y-~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA~lY~iqN~L~f~al~~lda~tfqvl 151 (194)
+++| ++.-.+|..-++-++++.+++.+ ++++ . ...+.+.+++.-|+-=.+..-++|-||.|++=+|+-+.
T Consensus 45 ~~rF~~~~fL~~~q~l~~~~~s~~~l~~-~k~~-~-------~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~La 115 (327)
T KOG1581|consen 45 GERFEHSLFLVFCQRLVALLVSYAMLKW-WKKE-L-------SGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLA 115 (327)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHhc-cccc-C-------CCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHH
Confidence 3444 66778888888888888666632 2221 1 11223456777788888899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357 152 KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 191 (194)
Q Consensus 152 ~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql 191 (194)
...|++-+.+...++.|||++..+++..++..+||.+.-+
T Consensus 116 KscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l 155 (327)
T KOG1581|consen 116 KSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSL 155 (327)
T ss_pred HHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEE
Confidence 9999999999999999999999999999999999987544
No 38
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=96.59 E-value=0.018 Score=44.77 Aligned_cols=68 Identities=12% Similarity=-0.011 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHH--HHHhCcccHHHHHHHHHHHHhhhhccccC
Q 029357 126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYR--IILKKKLSEIQWAAFILLCCGCTTAQLNS 193 (194)
Q Consensus 126 A~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~--l~L~rkLs~~QW~aL~lL~~Gv~lvql~~ 193 (194)
-++|.+.-.+-..+++.+|.+.=.-+...-...++++++ +++|.++|..||+++.+.++|+.+++.++
T Consensus 55 l~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 55 LAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 367888888889999999987433333444455556665 48999999999999999999999987653
No 39
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=96.49 E-value=0.16 Score=45.85 Aligned_cols=58 Identities=19% Similarity=0.122 Sum_probs=54.3
Q ss_pred HHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357 135 LQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (194)
Q Consensus 135 L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~ 192 (194)
+.+.++++++|+.-.+...+.-++++++++++|+.+++..||++.++.++|+.+++..
T Consensus 272 lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~ 329 (358)
T PLN00411 272 IHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG 329 (358)
T ss_pred HHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 5667889999999999999999999999999999999999999999999999998753
No 40
>PRK11689 aromatic amino acid exporter; Provisional
Probab=96.48 E-value=0.13 Score=44.51 Aligned_cols=65 Identities=11% Similarity=0.021 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357 127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 191 (194)
Q Consensus 127 ~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql 191 (194)
+.-.+...+.+.++++++|+.-.++.-+..+++.++.+++++.+++..||++.++.+.|+.+..+
T Consensus 223 ~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 223 AAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 33455677889999999999999999999999999999999999999999999999999987654
No 41
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.48 E-value=0.0052 Score=54.70 Aligned_cols=69 Identities=14% Similarity=0.247 Sum_probs=63.5
Q ss_pred hcccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhh
Q 029357 120 IVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT 188 (194)
Q Consensus 120 l~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~l 188 (194)
..+..=++++..+|...|..+.+..|.||||.++.|-...-..++++++++++..|-++..+-.+|+.+
T Consensus 236 ~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~ 304 (316)
T KOG1441|consen 236 LILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFL 304 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHH
Confidence 334444599999999999999999999999999999999999999999999999999999999999986
No 42
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=96.33 E-value=0.013 Score=50.56 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357 130 LVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 191 (194)
Q Consensus 130 ~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql 191 (194)
.+...+.+.++++++++...++.-+.-+++++++++++|.+++..||++.++..+|+.+.+.
T Consensus 224 ~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 224 IIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 46677889999999999999999999999999999999999999999999999999988765
No 43
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.07 E-value=0.0069 Score=50.14 Aligned_cols=67 Identities=18% Similarity=0.135 Sum_probs=60.7
Q ss_pred ccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhh
Q 029357 122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT 188 (194)
Q Consensus 122 ~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~l 188 (194)
..++.++-+++..+....+++.|+.+..+...++++.+++++.++++++++..||++..+.+.|+.+
T Consensus 155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 4455677788888899999999999999999999999999999999999999999999999988753
No 44
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.07 E-value=0.0057 Score=54.44 Aligned_cols=70 Identities=20% Similarity=0.283 Sum_probs=65.2
Q ss_pred cccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcc
Q 029357 121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ 190 (194)
Q Consensus 121 ~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvq 190 (194)
...-.|+.+++...+..+++++.+-+.+|+..-+..++|.++++++.+++.++.-|++|.....||++.-
T Consensus 85 ~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias 154 (316)
T KOG1441|consen 85 TLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIAS 154 (316)
T ss_pred HHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEee
Confidence 4566789999999999999999999999999999999999999999999999999999999999988753
No 45
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=96.06 E-value=0.0098 Score=50.99 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhh
Q 029357 126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT 188 (194)
Q Consensus 126 A~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~l 188 (194)
.+.-.+.+.+.+.+++++|++.-..+.++..+++.+++++++|.+++..||++..+.++|+.+
T Consensus 218 ~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 218 GLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 345567788899999999999999999999999999999999999999999999999999875
No 46
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=96.04 E-value=0.03 Score=48.35 Aligned_cols=60 Identities=17% Similarity=0.198 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357 130 LVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (194)
Q Consensus 130 ~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv 189 (194)
.++..+++.++++++|..-.++.-+..++++++++++++.+++..||++..+.++|++..
T Consensus 220 ~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~ 279 (293)
T PRK10532 220 ALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGS 279 (293)
T ss_pred HHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 456668889999999999999999999999999999999999999999999999998875
No 47
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.01 E-value=0.033 Score=40.62 Aligned_cols=61 Identities=15% Similarity=0.225 Sum_probs=40.0
Q ss_pred ccchhHHHHHHHHHHHHHHHhCChH-HHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHH
Q 029357 122 YPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILL 182 (194)
Q Consensus 122 ~~vPA~lY~iqN~L~f~al~~lda~-tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL 182 (194)
....-.+|.+.-.+.-.+++++|.+ .|-+...+-++.+++.+++++|.++|..||+++.+.
T Consensus 32 ~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 32 TILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp --HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3444458999999999999999966 889999999999999999999999999999999863
No 48
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=95.72 E-value=0.05 Score=47.06 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357 131 VKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (194)
Q Consensus 131 iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~ 192 (194)
++-.+.+.++++++|..-.++.-+.-++++++++++++.+++..||++..+.++|+.+.+.+
T Consensus 227 ~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 227 VGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 45557778889999999999999999999999999999999999999999999999887553
No 49
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=95.60 E-value=0.12 Score=44.44 Aligned_cols=125 Identities=18% Similarity=0.241 Sum_probs=85.1
Q ss_pred HHHhHHHHHHHHhh--cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchhHHHHHHH
Q 029357 56 VLTSSQAILIVWSK--RAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKN 133 (194)
Q Consensus 56 l~~~~~~il~k~Sr--~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA~lY~iqN 133 (194)
+.++..+|++..+. .-....|+-.-+++..+-+-+.+.+.++-+ .+--. ...++..++-.|+++-++-=
T Consensus 12 lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~-l~~~~--------fR~t~aK~WfpiSfLLv~MI 82 (309)
T COG5070 12 LSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKF-LRLVE--------FRLTKAKKWFPISFLLVVMI 82 (309)
T ss_pred HHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHH-HhHhh--------eehhhhhhhcCHHHHHHHHH
Confidence 34555566666542 223456777777777777766666666522 11111 11234445677777665533
Q ss_pred HHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357 134 LLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (194)
Q Consensus 134 ~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv 189 (194)
.-.-=++++++.+.|.++.++-|+..|..=+.++|++.+.....+.+++++.-...
T Consensus 83 yt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va 138 (309)
T COG5070 83 YTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVA 138 (309)
T ss_pred HhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHh
Confidence 33334678889999999999999999999999999999999999999988765543
No 50
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=95.50 E-value=0.5 Score=40.78 Aligned_cols=125 Identities=14% Similarity=0.031 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccc
Q 029357 45 KRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPI 124 (194)
Q Consensus 45 ~~k~~~l~~Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~v 124 (194)
.+.++.+++-++..+......|+.-. .+.+...++. .++++..++....++... + .++++.....+
T Consensus 11 ~~~~~~~~la~~~~~~~~~~~K~~~~----~~~~~~~~~~----R~~~a~l~l~~~~~~~~~----~--~~~~~~~~~~~ 76 (293)
T PRK10532 11 WLPILLLLIAMASIQSGASLAKSLFP----LVGAPGVTAL----RLALGTLILIAIFKPWRL----R--FAKEQRLPLLF 76 (293)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHH----HcCHHHHHHH----HHHHHHHHHHHHHhHHhc----c--CCHHHHHHHHH
Confidence 44455555555556666677887532 1344433333 333333222111121111 1 11233333445
Q ss_pred hhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357 125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (194)
Q Consensus 125 PA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv 189 (194)
-++++.+.|.+.|+++++++++.--++..+.-++++++. +|+.++.+|+++ .++|+.++
T Consensus 77 ~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~~~~~i--~~~Gv~li 135 (293)
T PRK10532 77 YGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVDFVWVVL--AVLGLWFL 135 (293)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHHHHHHHH--HHHHHhee
Confidence 556788889999999999999987777766666666665 355666666554 46777653
No 51
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=95.42 E-value=0.31 Score=42.60 Aligned_cols=128 Identities=13% Similarity=0.092 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccc
Q 029357 45 KRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPI 124 (194)
Q Consensus 45 ~~k~~~l~~Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~v 124 (194)
++..+.++.-++-+...+.+.|+...+ ...+++-|.+=+.++.+++.. ..++ .. ..|..++=.+
T Consensus 137 ~kgi~~Ll~stigy~~Y~~~~~~~~~~-------~~~~~lPqaiGm~i~a~i~~~-~~~~------~~--~~k~~~~nil 200 (269)
T PF06800_consen 137 KKGILALLISTIGYWIYSVIPKAFHVS-------GWSAFLPQAIGMLIGAFIFNL-FSKK------PF--FEKKSWKNIL 200 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCC-------hhHhHHHHHHHHHHHHHHHhh-cccc------cc--cccchHHhhH
Confidence 333444444466666677766664422 233555666666666555532 1110 01 1123445578
Q ss_pred hhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHH----HHHHHHHhhhh
Q 029357 125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWA----AFILLCCGCTT 188 (194)
Q Consensus 125 PA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~----aL~lL~~Gv~l 188 (194)
+.+++.+.|..++++.+.+-.++=-.++|+-++...+-..++||.+=+++||. ++++.++|.++
T Consensus 201 ~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 201 TGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 89999999999999999999999899999999999999999999998888775 44455556543
No 52
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=95.30 E-value=0.44 Score=41.34 Aligned_cols=68 Identities=13% Similarity=0.253 Sum_probs=60.0
Q ss_pred cchhHHHHHHHHHHHHHHHhCChHHHHHHhh-hHHHHHHHHHHHHHhCcccHHH----HHHHHHHHHhhhhcc
Q 029357 123 PIPAVLYLVKNLLQYYIFAYVDAPGYQILKN-LNIISTGVLYRIILKKKLSEIQ----WAAFILLCCGCTTAQ 190 (194)
Q Consensus 123 ~vPA~lY~iqN~L~f~al~~lda~tfqvl~q-~KIl~TAlfs~l~L~rkLs~~Q----W~aL~lL~~Gv~lvq 190 (194)
.+-.+++.+.|..+|.+.+++..++=..+++ +-.+...+++.+++|.+.++++ +.++++.++|+.++-
T Consensus 63 ~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~ 135 (290)
T TIGR00776 63 LLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS 135 (290)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence 3344569999999999999999998877777 8888999999999999999999 999999999998863
No 53
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=94.45 E-value=0.16 Score=43.95 Aligned_cols=61 Identities=8% Similarity=-0.031 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357 131 VKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 191 (194)
Q Consensus 131 iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql 191 (194)
+...+.+.+++++||+.-..+.-+..+++.++.+++++.+++..||.+..+..+|+.++..
T Consensus 225 i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 225 VPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM 285 (296)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999999999999999999999999999999999999888777644
No 54
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=94.42 E-value=0.22 Score=41.28 Aligned_cols=74 Identities=23% Similarity=0.247 Sum_probs=62.7
Q ss_pred hhhcccchhHHHH-HHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357 118 EVIVYPIPAVLYL-VKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 191 (194)
Q Consensus 118 ~~l~~~vPA~lY~-iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql 191 (194)
+......-+++-. +.-.+.+.+++..++....+..-+.++.+.++.+++++.+.+..||.+..+.+.|+.+...
T Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~ 287 (292)
T COG0697 213 AWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL 287 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 3334444444444 5788889999999999999999999999999999999999999999999999999988764
No 55
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=93.85 E-value=0.28 Score=43.85 Aligned_cols=142 Identities=15% Similarity=0.096 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhc--CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhc-
Q 029357 45 KRKSVVTLALTVLTSSQAILIVWSKR--AGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIV- 121 (194)
Q Consensus 45 ~~k~~~l~~Lvl~~~~~~il~k~Sr~--~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~- 121 (194)
.++.+...++++.+-+.+|..++-.. ..+.+ .|--++-+--++|+.++...... +++.. ...|...+|++.++
T Consensus 11 ~~~rV~~L~lVl~yY~~Si~Ltf~~~~~~~~f~-fPLf~ts~h~~v~flfa~~~~~l-~~~~~--~r~r~~~sw~~~Lr~ 86 (349)
T KOG1443|consen 11 LMNRVLTLALVLLYYFLSIGLTFYFKWLTKNFH-FPLFVTSLHLAVKFLFAALSRRL-YQCSV--PRARVVLSWRDYLRR 86 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcC-CchHHHHHHHHHHHHHHHHHHHH-HhccC--CccccCCcHHHHHHH
Confidence 45555666677888888888887432 22333 34455556677888777665422 22222 22344467877764
Q ss_pred ccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcc
Q 029357 122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ 190 (194)
Q Consensus 122 ~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvq 190 (194)
++.-|+.=+..==|.-.++.+.+-+.|-|+...-|++.=+|+.++==.++++.=-...++...|+.+.-
T Consensus 87 ~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft 155 (349)
T KOG1443|consen 87 LAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFT 155 (349)
T ss_pred hhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEE
Confidence 444455555555677888999999999999999999999999999666666665555666677776643
No 56
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.28 E-value=0.11 Score=44.99 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=55.5
Q ss_pred cchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhh
Q 029357 123 PIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT 188 (194)
Q Consensus 123 ~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~l 188 (194)
..-|++-.+.....|.......|-+-.+..-++=++|-+.|+++++..+|.+||++-++.+.|...
T Consensus 245 ~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 245 TLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 344555556666778888888899999999999999999999999999999999999999888754
No 57
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.20 E-value=1.2 Score=39.73 Aligned_cols=114 Identities=16% Similarity=0.163 Sum_probs=78.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchhHHHHHHHHHHHHHHHhCChHHHHHHh
Q 029357 73 KYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILK 152 (194)
Q Consensus 73 ~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~ 152 (194)
++.-++-..|+-..+.-.+.+..-+. .......+..-....++-.+-+.+=+.+=++.-+..|.-++..-+-+|-+..
T Consensus 197 ~~k~s~~~mM~~vNLf~~i~~~~~li--~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ 274 (327)
T KOG1581|consen 197 KYKVSSLHMMFGVNLFSAILNGTYLI--LQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIM 274 (327)
T ss_pred cCCccHhHHHHHHHHHHHHHHHHhhh--cCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHH
Confidence 34455666676666665444443321 1111110000011223222335566778888889999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhh
Q 029357 153 NLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT 188 (194)
Q Consensus 153 q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~l 188 (194)
-+|=+++=++|.++.++++|..||.+....+.|+..
T Consensus 275 ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 275 TTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred HHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 999999999999999999999999999988888764
No 58
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=89.96 E-value=0.085 Score=46.51 Aligned_cols=71 Identities=20% Similarity=0.381 Sum_probs=59.2
Q ss_pred cccchhHHHHHHHHHHHHHHH-hCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357 121 VYPIPAVLYLVKNLLQYYIFA-YVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 191 (194)
Q Consensus 121 ~~~vPA~lY~iqN~L~f~al~-~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql 191 (194)
.|++--.++.+-|..--+|+. +++-+..-+++..-.++|-+.+++++||+.|.+|..|.+++++|+++.-+
T Consensus 66 ~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl 137 (330)
T KOG1583|consen 66 DYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTL 137 (330)
T ss_pred hhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEe
Confidence 355556666666666666665 46677888999999999999999999999999999999999999998755
No 59
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=89.82 E-value=1.3 Score=39.18 Aligned_cols=74 Identities=23% Similarity=0.318 Sum_probs=50.2
Q ss_pred cccccchhhcccchhHHHHHHHHHHHHHHHh---CChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhh
Q 029357 112 LSTTLDEVIVYPIPAVLYLVKNLLQYYIFAY---VDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT 188 (194)
Q Consensus 112 ~~~~~~~~l~~~vPA~lY~iqN~L~f~al~~---lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~l 188 (194)
...+++......+-|++-..|=.+.-.|.+| +|++ .=|=..-++..++..++||.|+|+.||+|+.+-.+||..
T Consensus 65 ~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaS---LGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~ 141 (293)
T COG2962 65 LLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEAS---LGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLI 141 (293)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHH---hHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 3455666665566555555554444445554 4444 122234567778889999999999999999999999975
No 60
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=88.67 E-value=3 Score=36.45 Aligned_cols=110 Identities=13% Similarity=0.183 Sum_probs=81.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchhHHHHHHHHHHHHHHHhCChH-HHHH
Q 029357 72 GKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAP-GYQI 150 (194)
Q Consensus 72 ~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA~lY~iqN~L~f~al~~lda~-tfqv 150 (194)
|+.++++..-+-++-++ +++++... .+. ....+.+.++.-.+=.++.++.+..+|.+.+++--+ ++=+
T Consensus 9 gG~~~~Q~lG~t~Gali---~alv~~~~--~~p------~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPi 77 (269)
T PF06800_consen 9 GGKPANQILGTTIGALI---FALVVFLF--RQP------AFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPI 77 (269)
T ss_pred CCcHHHHHHHHHHHHHH---HHHHHHHH--hCC------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeecc
Confidence 46677877666665554 55554432 121 111123445555666789999999999999999866 7777
Q ss_pred HhhhHHHHHHHHHHHHHhCcccHHHHH----HHHHHHHhhhhcccc
Q 029357 151 LKNLNIISTGVLYRIILKKKLSEIQWA----AFILLCCGCTTAQLN 192 (194)
Q Consensus 151 l~q~KIl~TAlfs~l~L~rkLs~~QW~----aL~lL~~Gv~lvql~ 192 (194)
-..+-++.|+++.+++++.--+..||. |++++++|+.+.-.+
T Consensus 78 Stg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~ 123 (269)
T PF06800_consen 78 STGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQ 123 (269)
T ss_pred chhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccc
Confidence 778889999999999999999999997 888999999887554
No 61
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=88.67 E-value=0.33 Score=42.82 Aligned_cols=64 Identities=13% Similarity=0.201 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357 126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (194)
Q Consensus 126 A~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv 189 (194)
.+.=...-.++|+|+.+|+-+-=.+.-=..-.+|++|++++||.+.|...=+...+-..||+++
T Consensus 104 g~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLI 167 (346)
T KOG4510|consen 104 GFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLI 167 (346)
T ss_pred hhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEE
Confidence 3444555678999999998665555555667899999999999999998888888888998875
No 62
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=88.11 E-value=0.84 Score=39.72 Aligned_cols=73 Identities=15% Similarity=0.196 Sum_probs=63.9
Q ss_pred hcccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357 120 IVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (194)
Q Consensus 120 l~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~ 192 (194)
..++--|+-|...-.-.--|++++|=+|-.+-...|-+-.-++.+++.+|+.+++++.+..+.+.||++.-+.
T Consensus 86 ~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK 158 (337)
T KOG1580|consen 86 KMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYK 158 (337)
T ss_pred hHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcc
Confidence 3567777888888777788999999999777778999999999999999999999999999999999987553
No 63
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=88.09 E-value=0.93 Score=41.55 Aligned_cols=71 Identities=15% Similarity=0.159 Sum_probs=65.9
Q ss_pred ccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357 122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (194)
Q Consensus 122 ~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~ 192 (194)
...=+.+..+.|.....||.+...+...+++.+.=++|=.+..++.+.|++..+-+++++-+.||+++-++
T Consensus 162 sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~ 232 (416)
T KOG2765|consen 162 SLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMG 232 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEec
Confidence 34557789999999999999999999999999999999999999999999999999999999999998765
No 64
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=82.26 E-value=21 Score=27.71 Aligned_cols=121 Identities=13% Similarity=0.052 Sum_probs=65.5
Q ss_pred HHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchhHHHHHHH
Q 029357 54 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKN 133 (194)
Q Consensus 54 Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA~lY~iqN 133 (194)
..+|...+.-+-+... .++..+..++..=.+=+.+..++. ++. ..++....+.-.+.=.+..++|..-|
T Consensus 13 i~~q~~~N~~L~~~~g----s~~~as~i~~~~G~i~~~i~~~~~----~~~---~~~~~~~~p~w~~lGG~lG~~~V~~~ 81 (138)
T PF04657_consen 13 IALQAAFNGQLGKALG----SPLVASFISFGVGFILLLIILLIT----GRP---SLASLSSVPWWAYLGGLLGVFFVLSN 81 (138)
T ss_pred HHHHHHHHHHHHHHhC----ccHHHHHHHHHHHHHHHHHHHHHh----ccc---ccchhccCChHHhccHHHHHHHHHHH
Confidence 4556666654444422 467788777777766332222221 221 11122111221223456666676666
Q ss_pred HHHHHHHHhCChHHHHHHhhhHHHHHHHH-HHH----HHhCcccHHHHHHHHHHHHhhhh
Q 029357 134 LLQYYIFAYVDAPGYQILKNLNIISTGVL-YRI----ILKKKLSEIQWAAFILLCCGCTT 188 (194)
Q Consensus 134 ~L~f~al~~lda~tfqvl~q~KIl~TAlf-s~l----~L~rkLs~~QW~aL~lL~~Gv~l 188 (194)
+... ..+.++...++.=.-=+.+++. =.+ .-+|+++..+..++.++.+|+.+
T Consensus 82 ~~~v---p~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 82 IILV---PRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHh---hhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 5544 6666665544432222333333 332 46789999999999999999864
No 65
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.69 E-value=1.2 Score=39.85 Aligned_cols=63 Identities=24% Similarity=0.359 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357 127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (194)
Q Consensus 127 ~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv 189 (194)
+.+.+.+..-|.|+.+-|++.--=+.-+-++..|+++..+||.|++..--++.++.++|-.+.
T Consensus 72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~i 134 (335)
T KOG2922|consen 72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTI 134 (335)
T ss_pred HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEE
Confidence 578889999999999999999999999999999999999999999988888888888876553
No 66
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.65 E-value=33 Score=27.50 Aligned_cols=127 Identities=14% Similarity=0.091 Sum_probs=69.1
Q ss_pred HHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchhHHHHHH
Q 029357 53 ALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVK 132 (194)
Q Consensus 53 ~Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA~lY~iq 132 (194)
.+.+|+..++=+.|+.+ .+...+...|.+-.+-+ ..+.. . .++..........+.-.+.=.+-...|...
T Consensus 16 ~l~~Q~~iN~qL~~~~~----spl~As~isf~vGt~~L----~~l~l-~-~~~~~~~a~~~~~pwW~~~GG~lGa~~vt~ 85 (150)
T COG3238 16 LLPLQAAINGRLARYLG----SPLLASLISFLVGTVLL----LILLL-I-KQGHPGLAAVASAPWWAWIGGLLGAIFVTS 85 (150)
T ss_pred hhhhHHHHHHHHHHHcC----ChHHHHHHHHHHHHHHH----HHHHH-H-hcCCCchhhccCCchHHHHccchhhhhhhh
Confidence 36778887776666654 46777777777766522 22211 1 112111111111121122334556788888
Q ss_pred HHHHHHHHHhCChHHHHHHhhhHHHHHHHH----HHH-HHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357 133 NLLQYYIFAYVDAPGYQILKNLNIISTGVL----YRI-ILKKKLSEIQWAAFILLCCGCTTAQLN 192 (194)
Q Consensus 133 N~L~f~al~~lda~tfqvl~q~KIl~TAlf----s~l-~L~rkLs~~QW~aL~lL~~Gv~lvql~ 192 (194)
|.+.+ ..+-+++.+.+-=.--+..|+. .++ .-+|+++..++.++.++.+|+.+.|..
T Consensus 86 s~~l~---p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~ 147 (150)
T COG3238 86 SILLA---PRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF 147 (150)
T ss_pred hHHhc---cchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence 87765 4455555544321111122221 111 235899999999999999998887764
No 67
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=74.69 E-value=64 Score=28.98 Aligned_cols=67 Identities=18% Similarity=0.143 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHH----HHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357 126 AVLYLVKNLLQY----YIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (194)
Q Consensus 126 A~lY~iqN~L~f----~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~ 192 (194)
-+.|++...+.| +.+..-+|..+.+=--+-.+.+.++.+++.+.++++..++|.++.++|.++....
T Consensus 236 ~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~ 306 (334)
T PF06027_consen 236 LVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLA 306 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEcc
Confidence 344444444433 4455666776776656667777888899999999999999999999999987654
No 68
>PRK13499 rhamnose-proton symporter; Provisional
Probab=69.63 E-value=87 Score=28.35 Aligned_cols=76 Identities=8% Similarity=0.178 Sum_probs=58.3
Q ss_pred cchhhcccchhHHHHHHHHHHHHHHHhCChH----HHHHHhhhHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHh
Q 029357 116 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAP----GYQILKNLNIISTGVLYRIILKKKLS------EIQWAAFILLCCG 185 (194)
Q Consensus 116 ~~~~l~~~vPA~lY~iqN~L~f~al~~lda~----tfqvl~q~KIl~TAlfs~l~L~rkLs------~~QW~aL~lL~~G 185 (194)
+++.+.-+++.++..+||..++.+-+.+..+ .|-+-.|+-+++..+-.. +||.+=+ +.=|.++++++.|
T Consensus 257 ~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g 335 (345)
T PRK13499 257 ITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILA 335 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHH
Confidence 3555555888999999999999999988332 344666888888888777 4875544 5668888999999
Q ss_pred hhhcccc
Q 029357 186 CTTAQLN 192 (194)
Q Consensus 186 v~lvql~ 192 (194)
.+++++.
T Consensus 336 ~~lig~~ 342 (345)
T PRK13499 336 ANIVGLG 342 (345)
T ss_pred HHHHhhc
Confidence 9988763
No 69
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=63.48 E-value=6.9 Score=33.36 Aligned_cols=117 Identities=16% Similarity=0.159 Sum_probs=81.8
Q ss_pred HHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccch-hHHHHH
Q 029357 53 ALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP-AVLYLV 131 (194)
Q Consensus 53 ~Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vP-A~lY~i 131 (194)
++..++.+..++-|.++++. +.+++=-.|.. |+..|.+. .+.|..++..-| +++.+.
T Consensus 8 ~~~~~~~~~~~ldkL~qRRe-----~N~ilGhmE~~----------R~FGe~kG-------~nik~~~~~taPF~i~Wt~ 65 (290)
T KOG4314|consen 8 AMILCFGASGILDKLRQRRE-----PNSILGHMECF----------RIFGEDKG-------FNIKLFFIRTAPFSIFWTG 65 (290)
T ss_pred hHHhhcccceeHHHHHhcCC-----CceeechHHHH----------HHhccccC-------ceeeeeeeeecceEEEEec
Confidence 45678888888889864331 11111112443 11223211 122333333333 467788
Q ss_pred HHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357 132 KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 191 (194)
Q Consensus 132 qN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql 191 (194)
.|.+...|+..+.|+.-.-+.-..-.+.=++++++||.++-..+.++.++-..|+++..+
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay 125 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAY 125 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEe
Confidence 999999999999999888888888888899999999999999999999999999887653
No 70
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=58.77 E-value=26 Score=21.04 Aligned_cols=29 Identities=31% Similarity=0.496 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhC
Q 029357 125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 169 (194)
Q Consensus 125 PA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~r 169 (194)
|-+||.+...|..++ |+.||+|.+.=+.|
T Consensus 2 P~lCYiLDgiL~iYg----------------iiiT~L~~R~K~~~ 30 (33)
T PF11628_consen 2 PRLCYILDGILFIYG----------------IIITALYCREKFSK 30 (33)
T ss_dssp -THHHHHHHHHHHHH----------------HHHHHHHHHHHSTT
T ss_pred CceeeeHHHHHHHHH----------------HHHHHHHHHHHhhh
Confidence 678999998888776 48889888765544
No 71
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.33 E-value=50 Score=24.94 Aligned_cols=30 Identities=20% Similarity=0.019 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhhhh
Q 029357 159 TGVLYRIILKKKLSEIQWAAFILLCCGCTT 188 (194)
Q Consensus 159 TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~l 188 (194)
-..||++.||..+.+.+|.+-.+++.|+..
T Consensus 83 Fv~Fsvfyl~epl~~~~l~a~~~i~gav~f 112 (116)
T COG3169 83 FVPFSVFYLKEPLRWNYLWAFLLILGAVYF 112 (116)
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999888764
No 72
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=54.46 E-value=19 Score=27.31 Aligned_cols=32 Identities=13% Similarity=-0.019 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhhhh
Q 029357 157 ISTGVLYRIILKKKLSEIQWAAFILLCCGCTT 188 (194)
Q Consensus 157 l~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~l 188 (194)
.+-+.|++++||.++++.+..|..+++.++..
T Consensus 74 ~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 74 VVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred heeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 34578999999999999999999999887654
No 73
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=53.10 E-value=46 Score=31.34 Aligned_cols=64 Identities=16% Similarity=0.228 Sum_probs=38.0
Q ss_pred chhHHH-HHHHHHHHHHHHhC------C----hHHHHHHhhhHHHHHHHH---HH-HHHhCcccHHHHHHHHHHHHhhhh
Q 029357 124 IPAVLY-LVKNLLQYYIFAYV------D----APGYQILKNLNIISTGVL---YR-IILKKKLSEIQWAAFILLCCGCTT 188 (194)
Q Consensus 124 vPA~lY-~iqN~L~f~al~~l------d----a~tfqvl~q~KIl~TAlf---s~-l~L~rkLs~~QW~aL~lL~~Gv~l 188 (194)
-|..|| .+-|.+.|+.+-++ . -..|-++|.+-=++.=.+ .. +++ .++..||+|++++++|+++
T Consensus 194 HPTqLYEsi~~lllf~iLl~l~rk~~~~~G~lf~lYli~Ygi~RF~iEflR~d~~~~~~--gl~~~Q~lSl~~il~gl~~ 271 (460)
T PRK13108 194 QPTFLYELIWNVLVFVALIYIDRRFIIGHGRLFGFYVAFYCAGRFCVELLRDDPATLIA--GIRINSFTSTFVFIGAVVY 271 (460)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhccCchhhhc--CccHHHHHHHHHHHHHHHH
Confidence 688899 45677777766443 1 134555554221111111 01 112 2899999999999999876
Q ss_pred c
Q 029357 189 A 189 (194)
Q Consensus 189 v 189 (194)
.
T Consensus 272 ~ 272 (460)
T PRK13108 272 I 272 (460)
T ss_pred H
Confidence 5
No 74
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=46.19 E-value=7.5 Score=34.02 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=60.6
Q ss_pred chhhcccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHH----HHHHHHhhhhc
Q 029357 117 DEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAA----FILLCCGCTTA 189 (194)
Q Consensus 117 ~~~l~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~a----L~lL~~Gv~lv 189 (194)
|..++-.+|.++..+.|..++++.+..--+|=--++|+-++...+--.++||.|=+++||.. +++.+.|.++.
T Consensus 207 K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~l 283 (288)
T COG4975 207 KYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILL 283 (288)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhh
Confidence 34556789999999999999999999887777778999999999999999999999999864 44666665543
No 75
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=45.20 E-value=99 Score=27.72 Aligned_cols=141 Identities=16% Similarity=0.102 Sum_probs=89.0
Q ss_pred chhhhHHHHHHHHHHHHHHhHHHHHHHHhh-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhh-hCCCCCcccccccc
Q 029357 40 ELANWKRKSVVTLALTVLTSSQAILIVWSK-RAGKYEYSVTTANFLVETLKCALSLAALARIWNH-EGVTDDNRLSTTLD 117 (194)
Q Consensus 40 ~~~~~~~k~~~l~~Lvl~~~~~~il~k~Sr-~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~-~~~~~~~~~~~~~~ 117 (194)
..++|.+-.++....-+.+-....+-.+-- +.|-.||--. ..|..-.+ -+-+-+ -+ ...+ .++.+..||
T Consensus 37 ~kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWy-lTlvQf~~---Ysg~gl----ie~~~~~-~k~r~iP~r 107 (367)
T KOG1582|consen 37 DKPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWY-LTLVQFLV---YSGFGL----IELQLIQ-TKRRVIPWR 107 (367)
T ss_pred cCchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchH-HHHHHHHH---HHhhhh----eEEEeec-ccceecchh
Confidence 356677666666666666777777777642 3332333211 11111111 011111 01 1111 122222333
Q ss_pred hhhcccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357 118 EVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (194)
Q Consensus 118 ~~l~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~ 192 (194)
-+.+-|++-.-..-|.--++.|++=++--++..+|++-.-+-..++=|+|.......|-.++.+|++..-+.
T Consensus 108 ---tY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLA 179 (367)
T KOG1582|consen 108 ---TYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLA 179 (367)
T ss_pred ---HhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhc
Confidence 355666666666667777888999999999999999999999999999999999999999999999987653
No 76
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=44.70 E-value=22 Score=27.22 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=55.1
Q ss_pred cccchhHHHHHHHHHHHHHHHhCChH-HHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357 121 VYPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (194)
Q Consensus 121 ~~~vPA~lY~iqN~L~f~al~~lda~-tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv 189 (194)
.|.+|=++--...-+.|.-+++-|-+ .--+.+.+.+.+||++...+=.+..-++--.+..+.++|+.+.
T Consensus 54 ~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 54 EYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 47899999999999999999999855 5667888999999999988755555566667777778887653
No 77
>PF01098 FTSW_RODA_SPOVE: Cell cycle protein; InterPro: IPR001182 A number of prokaryotic integral membrane proteins involved in cell cycle processes have been found to be structurally related [, ]. These proteins include, the Escherichia coli and related bacteria cell division protein ftsW and the rod shape-determining protein rodA (or mrdB), the Bacillus subtilis stage V sporulation protein E (spoVE), the B. subtilis hypothetical proteins ywcF and ylaO and the Cyanophora paradoxa cyanelle ftsW homolog.; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=41.77 E-value=43 Score=29.76 Aligned_cols=53 Identities=19% Similarity=0.058 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchhHHHHHHHHHH
Q 029357 83 FLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQ 136 (194)
Q Consensus 83 ~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA~lY~iqN~L~ 136 (194)
=-+|+.|+.+-+.+... ..++.....++............+|.++...|+.+-
T Consensus 103 QPsE~~Ki~~il~lA~~-l~~~~~~~~~~~~~~~~~~~~~~i~~~li~lqpDlg 155 (358)
T PF01098_consen 103 QPSEFAKILLILFLAGI-LSKRKRWKRKNWKGLLILLLIIFIPVFLILLQPDLG 155 (358)
T ss_pred chHHHHHHHHHHHHHHH-HHhcccccccchhhhHHHHHHHHHHHHheeeecCcc
Confidence 35799998766655432 222111111111111122335677777777776553
No 78
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=41.63 E-value=47 Score=30.01 Aligned_cols=73 Identities=16% Similarity=0.264 Sum_probs=66.1
Q ss_pred chhhcccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357 117 DEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (194)
Q Consensus 117 ~~~l~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv 189 (194)
+....++.|+++-..--.-.|.-+...+.-|-.+.+-.|-+.|-++..++++-++|...|.++.+...|+..-
T Consensus 241 rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 241 RVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 4445678888888888888999999999999999999999999999999999999999999999999998765
No 79
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=38.86 E-value=1.4e+02 Score=26.74 Aligned_cols=68 Identities=18% Similarity=0.349 Sum_probs=51.0
Q ss_pred ccchh-HHHHHHHHHH-HHHHHhC-------ChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357 122 YPIPA-VLYLVKNLLQ-YYIFAYV-------DAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (194)
Q Consensus 122 ~~vPA-~lY~iqN~L~-f~al~~l-------da~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv 189 (194)
..+|. ..|.+.|.|. |...+.. ++-|-.+.-.++=.+.=++|.+.++..++..+|++-.+.++|..+.
T Consensus 236 ~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~f 312 (330)
T KOG1583|consen 236 FKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLF 312 (330)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHH
Confidence 34887 5899999886 4444432 2233444555677778899999999999999999999999998763
No 80
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.65 E-value=12 Score=33.31 Aligned_cols=67 Identities=24% Similarity=0.319 Sum_probs=49.1
Q ss_pred cchhhcccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Q 029357 116 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCG 185 (194)
Q Consensus 116 ~~~~l~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~G 185 (194)
.++.+++++-=++-..-||+ .|+|.+.+-||+=+.+-.++|-++++++||+|=|..--.+..+.+.|
T Consensus 102 ~r~vlplsvVfi~mI~fnnl---cL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~G 168 (347)
T KOG1442|consen 102 ARQVLPLSVVFILMISFNNL---CLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILG 168 (347)
T ss_pred HHhhcchhheeeeehhccce---ehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheeh
Confidence 34555555444444445554 68999999999999999999999999999999877655555444444
No 81
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=37.59 E-value=1.3 Score=38.91 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=64.2
Q ss_pred cccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357 121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 191 (194)
Q Consensus 121 ~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql 191 (194)
.+.+-|+.+.=.|.+.--|.++.+-..-|.+-.--|+..-+++|++||-|....|..+.+.+..|+.++-.
T Consensus 80 hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~ 150 (336)
T KOG2766|consen 80 HYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVF 150 (336)
T ss_pred HhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEE
Confidence 37778888888998888899999999999999999999999999999999999999999999999988644
No 82
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=34.15 E-value=1.5e+02 Score=24.08 Aligned_cols=26 Identities=31% Similarity=0.721 Sum_probs=19.3
Q ss_pred HHHHHHHhCcccHHHHHHHHHH-HHhh
Q 029357 161 VLYRIILKKKLSEIQWAAFILL-CCGC 186 (194)
Q Consensus 161 lfs~l~L~rkLs~~QW~aL~lL-~~Gv 186 (194)
+....+.+||++..||+++++. +.|.
T Consensus 37 v~~~~~~~r~v~~~~~is~~lv~vfG~ 63 (176)
T PF04279_consen 37 VAYSWIRRRKVPKMQWISLVLVLVFGG 63 (176)
T ss_pred HHHHHHHhCcCchhHHHHHHHHHHHHH
Confidence 3446677899999999998865 4443
No 83
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=31.07 E-value=3.3e+02 Score=23.05 Aligned_cols=57 Identities=19% Similarity=0.142 Sum_probs=50.1
Q ss_pred ccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHH
Q 029357 122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAA 178 (194)
Q Consensus 122 ~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~a 178 (194)
.-++-++.++...+.=..++|.|.-+=-.....-|+.|++++.++++.++|...-++
T Consensus 184 ~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg 240 (244)
T PF04142_consen 184 VWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLG 240 (244)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhh
Confidence 346778999999999999999999988888889999999999999999999765544
No 84
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=29.29 E-value=2.2e+02 Score=25.47 Aligned_cols=74 Identities=7% Similarity=0.065 Sum_probs=59.4
Q ss_pred cccchhhcccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhh
Q 029357 114 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCT 187 (194)
Q Consensus 114 ~~~~~~l~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~ 187 (194)
..+++.+.+..-.+.=.+.-+|.=.+++.=.|.--.+..-..+++.-++-++++|+--+..-|.+.+..+...+
T Consensus 248 ~cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v 321 (346)
T KOG4510|consen 248 HCGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTV 321 (346)
T ss_pred ccccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHH
Confidence 44566666777777777888888888888888877788888899999999999999999999998877655443
No 85
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=25.24 E-value=1.9e+02 Score=21.57 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhhhh
Q 029357 157 ISTGVLYRIILKKKLSEIQWAAFILLCCGCTT 188 (194)
Q Consensus 157 l~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~l 188 (194)
++.+++.=.+|.+++...-|+-+.++++|+++
T Consensus 56 il~G~~lG~WLD~~~~t~~~~tl~~lllGv~~ 87 (100)
T TIGR02230 56 TLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVI 87 (100)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 55566777788899887779999999999875
No 86
>COG2059 ChrA Chromate transport protein ChrA [Inorganic ion transport and metabolism]
Probab=24.87 E-value=3e+02 Score=22.85 Aligned_cols=64 Identities=20% Similarity=0.299 Sum_probs=46.4
Q ss_pred hhcccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHH---HHhCcccHHHHHHHHHHH
Q 029357 119 VIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRI---ILKKKLSEIQWAAFILLC 183 (194)
Q Consensus 119 ~l~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l---~L~rkLs~~QW~aL~lL~ 183 (194)
.+....|+++=.+-=...|.-+... |-+.+++..+|+.++++.... +.++..+.+.|.++....
T Consensus 84 ~lafvLPs~i~~~~l~~~~~~~~~~-~~v~~~~~glk~~ii~lv~~~~~~l~~~~~~~~~~~~~~~~~ 150 (195)
T COG2059 84 GLAFVLPSILIMLGLALLLKRFGDL-PLVKGILKGLKPAIIALVLQAVWRLGKKALKGRGWVGLAVLT 150 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 4567889888777666666666655 779999999999999988744 344555567787777554
No 87
>PF04241 DUF423: Protein of unknown function (DUF423); InterPro: IPR006696 This is a potential integral membrane protein with no known function.
Probab=24.41 E-value=2.4e+02 Score=20.10 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=27.0
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357 145 APGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (194)
Q Consensus 145 a~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv 189 (194)
+..||+..-+-++..++.... ..++..+.+-.++++|+++.
T Consensus 25 A~~y~~~Halall~~~~~~~~----~~~~~~~~a~~l~~~G~~lF 65 (89)
T PF04241_consen 25 AVQYQFIHALALLALGLLAQR----RSSRLLRLAGWLFLLGTLLF 65 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----hhchHHHHHHHHHHHHHHHH
Confidence 557777776666666644433 36777777777888887763
No 88
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=24.32 E-value=3.2e+02 Score=20.71 Aligned_cols=17 Identities=12% Similarity=-0.017 Sum_probs=8.6
Q ss_pred cchHHHHHHHHHHHHHH
Q 029357 75 EYSVTTANFLVETLKCA 91 (194)
Q Consensus 75 ~y~~st~v~l~E~lKl~ 91 (194)
....+.+.++.=++-++
T Consensus 72 ~~~~~~~llilG~L~fI 88 (115)
T PF05915_consen 72 DRDRGWALLILGILCFI 88 (115)
T ss_pred CCcccchHHHHHHHHHh
Confidence 34455555555555443
No 89
>COG0772 FtsW Bacterial cell division membrane protein [Cell division and chromosome partitioning]
Probab=20.99 E-value=3.2e+02 Score=24.97 Aligned_cols=82 Identities=20% Similarity=0.174 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCCcccc-cccchhhcccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHH
Q 029357 84 LVETLKCALSLAALARIWNHEGVTDDNRLS-TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVL 162 (194)
Q Consensus 84 l~E~lKl~isl~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlf 162 (194)
=+|+.|..+-+.+.....++.. ..++.. .-.+-.....+|+.+-+.|+-+- +-++..++.
T Consensus 119 PSEf~Ki~~il~lA~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~Li~~QpDlG-----------------ta~v~~~~~ 179 (381)
T COG0772 119 PSEFAKIALILYLAAYLSRKGD--EIKSFLRLFLKLILLVALPALLILLQPDLG-----------------TALLLFAIL 179 (381)
T ss_pred chHHHHHHHHHHHHHHHHhccc--hhhhhhhHHHHHHHHHHHHHHHHHcCCCch-----------------HHHHHHHHH
Confidence 3799998765555433222211 111000 01122345677777777776542 234455555
Q ss_pred HHHHHhCcccHHHHHHHHHHHH
Q 029357 163 YRIILKKKLSEIQWAAFILLCC 184 (194)
Q Consensus 163 s~l~L~rkLs~~QW~aL~lL~~ 184 (194)
..+++=-..+++.+..++++..
T Consensus 180 ~~~~f~ag~~~~~i~~~~~~~~ 201 (381)
T COG0772 180 LFMLFLAGLRWRWILALLVLAL 201 (381)
T ss_pred HHHHHHcCCcHHHHHHHHHHHH
Confidence 5555566677777775555533
No 90
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=20.96 E-value=1.6e+02 Score=24.19 Aligned_cols=28 Identities=29% Similarity=0.571 Sum_probs=20.0
Q ss_pred HHHHHHHhCcccHHHHHHHHHH-HHhhhh
Q 029357 161 VLYRIILKKKLSEIQWAAFILL-CCGCTT 188 (194)
Q Consensus 161 lfs~l~L~rkLs~~QW~aL~lL-~~Gv~l 188 (194)
+....+..||++..||+++++. ++|.++
T Consensus 37 ~~~~~~~~~~v~~m~~is~~lv~vFGglT 65 (178)
T TIGR00997 37 IGLSYVKYKKVEKMQWISFVLIVVFGGLT 65 (178)
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHHHHH
Confidence 3345677899999999998865 455443
Done!