Query 029357
Match_columns 194
No_of_seqs 144 out of 625
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 19:02:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029357.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029357hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 97.8 0.00011 3.8E-09 54.2 8.7 67 126-192 37-104 (110)
2 2i68_A Protein EMRE; transmemb 97.7 6.9E-05 2.4E-09 57.8 6.1 69 124-192 35-104 (137)
3 2hac_A T-cell surface glycopro 55.5 20 0.0007 20.6 3.9 29 125-169 2-30 (33)
4 1bba_A Bovine pancreatic polyp 11.2 81 0.0028 18.4 0.8 13 9-21 5-17 (36)
5 2hn8_A Protein PB1-F2; Pro-apo 10.6 34 0.0012 20.1 -1.0 14 168-181 4-17 (38)
6 1qbf_A Peptide YY, PYY; PP-fol 7.4 2.1E+02 0.007 16.8 1.5 14 9-22 5-18 (37)
7 2bf9_A Pancreatic hormone; tur 7.1 96 0.0033 18.1 -0.0 12 9-20 5-16 (36)
8 1f8p_A Neuropeptide Y (PNPY); 6.8 1.9E+02 0.0064 16.9 1.2 12 9-20 5-16 (37)
9 1dtc_A Acetyl-delta-toxin; NMR 6.4 2.7E+02 0.0092 14.8 1.6 13 81-93 6-18 (26)
10 2kdc_A Diacylglycerol kinase; 5.5 6.8E+02 0.023 18.0 4.0 23 169-191 48-70 (121)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.80 E-value=0.00011 Score=54.21 Aligned_cols=67 Identities=19% Similarity=0.315 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHHHhCChH-HHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357 126 AVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (194)
Q Consensus 126 A~lY~iqN~L~f~al~~lda~-tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~ 192 (194)
.++|.+.-.+...+++++|.+ .|-+...+-.+.|++++++++|.+++..||+++.+.++|+...+..
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 356777778888899999988 5566589999999999999999999999999999999999998764
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.67 E-value=6.9e-05 Score=57.79 Aligned_cols=69 Identities=19% Similarity=0.285 Sum_probs=51.2
Q ss_pred chhHHHHHHHHHHHHHHHhCChH-HHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357 124 IPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (194)
Q Consensus 124 vPA~lY~iqN~L~f~al~~lda~-tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~ 192 (194)
+=.++|.+...+...+++.+|++ .|-+...+-.+.+++++++++|.+++..||+++.+.++|+.+++..
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 33467888889999999999998 7777689999999999999999999999999999999999988653
No 3
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=55.50 E-value=20 Score=20.62 Aligned_cols=29 Identities=24% Similarity=0.505 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhC
Q 029357 125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 169 (194)
Q Consensus 125 PA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~r 169 (194)
|-+||.+...|..++ |+.||++.+.=+.|
T Consensus 2 p~lCYiLDgiL~iYg----------------ii~T~Ly~R~K~~~ 30 (33)
T 2hac_A 2 SKLCYLLDGILFIYG----------------VILTALFLRVKFSR 30 (33)
T ss_dssp CTHHHHHHHHHHHHH----------------HHHHHHHHHHHSTT
T ss_pred CceEeehHHHHHHHH----------------HHHHHHHHHHHhhc
Confidence 668899988888776 48899988776554
No 4
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=11.18 E-value=81 Score=18.42 Aligned_cols=13 Identities=8% Similarity=0.337 Sum_probs=7.5
Q ss_pred CcCCCCCCCCccc
Q 029357 9 EDNDGGGSSSGDL 21 (194)
Q Consensus 9 ~~~~~~~~~~~~~ 21 (194)
||.+.++|+++|.
T Consensus 5 P~~PG~dA~pEel 17 (36)
T 1bba_A 5 PEYPGDNATPEQM 17 (36)
T ss_dssp CCCCSSCSSTTHH
T ss_pred CCCCCCCCCHHHH
Confidence 4555555666654
No 5
>2hn8_A Protein PB1-F2; Pro-apoptotic mitochondrial targeting protein, viral protein; NMR {Synthetic}
Probab=10.57 E-value=34 Score=20.13 Aligned_cols=14 Identities=21% Similarity=0.228 Sum_probs=10.2
Q ss_pred hCcccHHHHHHHHH
Q 029357 168 KKKLSEIQWAAFIL 181 (194)
Q Consensus 168 ~rkLs~~QW~aL~l 181 (194)
|+..++.||.+|=-
T Consensus 4 Kqtv~wkqWlslkn 17 (38)
T 2hn8_A 4 KQIVYWKQWLSLRN 17 (38)
T ss_dssp HHHHHHHHHHTTHH
T ss_pred ccceeHHHHhhccC
Confidence 45568899998743
No 6
>1qbf_A Peptide YY, PYY; PP-fold, pancreatic hormone, , inhibitor/hormone complex; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ru5_A 1ruu_A 2rlk_A 2oop_A 2dez_A 2df0_A
Probab=7.35 E-value=2.1e+02 Score=16.76 Aligned_cols=14 Identities=21% Similarity=0.404 Sum_probs=8.3
Q ss_pred CcCCCCCCCCcccc
Q 029357 9 EDNDGGGSSSGDLE 22 (194)
Q Consensus 9 ~~~~~~~~~~~~~~ 22 (194)
|+.+.++|+++|..
T Consensus 5 P~~Pg~da~pEela 18 (37)
T 1qbf_A 5 PEAPGEDASPEELS 18 (37)
T ss_dssp CCCCCCSSSSSTTT
T ss_pred CCCCCCCCCHHHHH
Confidence 45566666666653
No 7
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=7.05 E-value=96 Score=18.10 Aligned_cols=12 Identities=17% Similarity=0.241 Sum_probs=5.6
Q ss_pred CcCCCCCCCCcc
Q 029357 9 EDNDGGGSSSGD 20 (194)
Q Consensus 9 ~~~~~~~~~~~~ 20 (194)
||.+.++|+++|
T Consensus 5 P~~PG~dA~~Ee 16 (36)
T 2bf9_A 5 PTYPGDDAPVED 16 (36)
T ss_dssp CCCCCTTSCHHH
T ss_pred CCCCCCCCCHHH
Confidence 344444455544
No 8
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=6.80 E-value=1.9e+02 Score=16.92 Aligned_cols=12 Identities=33% Similarity=0.548 Sum_probs=5.6
Q ss_pred CcCCCCCCCCcc
Q 029357 9 EDNDGGGSSSGD 20 (194)
Q Consensus 9 ~~~~~~~~~~~~ 20 (194)
|+.+.++|+++|
T Consensus 5 P~~Pg~~a~pEe 16 (37)
T 1f8p_A 5 PDNPGEDAPAED 16 (37)
T ss_dssp CCCCCSSCTTTT
T ss_pred CCCCCCCCCHHH
Confidence 344444455554
No 9
>1dtc_A Acetyl-delta-toxin; NMR {Staphylococcus aureus} SCOP: j.7.1.1 PDB: 2dtb_A 2kam_A*
Probab=6.40 E-value=2.7e+02 Score=14.84 Aligned_cols=13 Identities=8% Similarity=0.138 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHH
Q 029357 81 ANFLVETLKCALS 93 (194)
Q Consensus 81 ~v~l~E~lKl~is 93 (194)
+--++|++|+++-
T Consensus 6 isTIgdfvKlI~~ 18 (26)
T 1dtc_A 6 ISTIGDLVKWIID 18 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3456788888764
No 10
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=5.52 E-value=6.8e+02 Score=17.95 Aligned_cols=23 Identities=9% Similarity=0.030 Sum_probs=18.1
Q ss_pred CcccHHHHHHHHHHHHhhhhccc
Q 029357 169 KKLSEIQWAAFILLCCGCTTAQL 191 (194)
Q Consensus 169 rkLs~~QW~aL~lL~~Gv~lvql 191 (194)
=++|..+|+-+++.+..|..+++
T Consensus 48 l~~s~~e~~~li~~i~lVl~~El 70 (121)
T 2kdc_A 48 LDVDAITRVLLISSVMLVMIVEI 70 (121)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHHHHHHH
Confidence 35788999999888887777664
Done!