Query 029357
Match_columns 194
No_of_seqs 144 out of 625
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 19:02:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029357.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029357hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iu4a_ d.3.1.8 (A:) Microbial 12.9 51 0.0037 25.3 2.5 29 3-31 214-242 (331)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 6.7 4.5E+02 0.033 19.3 6.7 31 154-184 33-63 (248)
3 d3deua1 a.4.5.28 (A:2-141) Tra 4.6 4.2E+02 0.031 16.5 4.4 33 151-183 9-41 (140)
4 d1vf5c3 f.23.23.1 (C:250-286) 4.1 2.5E+02 0.019 14.9 2.0 16 173-190 5-20 (37)
5 d1fftb2 f.17.2.1 (B:27-117) Cy 4.0 2.1E+02 0.015 17.6 1.9 29 117-145 62-90 (91)
6 d1p4wa_ a.4.6.2 (A:) Transcrip 3.7 2E+02 0.015 17.5 1.5 23 169-191 21-43 (87)
7 d1y6ia1 a.118.1.22 (A:1-82) Mg 3.6 1.7E+02 0.013 18.3 1.2 19 145-163 56-74 (82)
8 d1z3xa1 a.118.1.22 (A:1-87) GU 3.1 2E+02 0.014 18.3 1.0 21 143-163 59-79 (87)
9 d1pz1a_ c.1.7.1 (A:) Putative 3.0 1.6E+02 0.011 22.0 0.4 9 1-9 1-9 (333)
10 d1go4a_ d.135.1.1 (A:) The spi 2.9 4.7E+02 0.034 18.1 3.2 22 77-98 6-27 (196)
No 1
>d1iu4a_ d.3.1.8 (A:) Microbial transglutaminase {Streptoverticillium mobaraense [TaxId: 35621]}
Probab=12.91 E-value=51 Score=25.27 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=16.9
Q ss_pred cccccCCcCCCCCCCCcccccccCccccc
Q 029357 3 YRKIKDEDNDGGGSSSGDLESLRGKPISV 31 (194)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (194)
-|||+|||-.+.--+..-++-...|.+|+
T Consensus 214 krkygdpdAfrp~~gTGlvDmSkDR~ipR 242 (331)
T d1iu4a_ 214 KRKYGDPDAFRPAPGTGLVDMSRDRNIPR 242 (331)
T ss_dssp HHHHCCTTTTCCCTTTCEECCTTCCCCCC
T ss_pred ccccCCccccCCCCCccceeccccccCCC
Confidence 48999999866622333444444554443
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=6.71 E-value=4.5e+02 Score=19.27 Aligned_cols=31 Identities=10% Similarity=-0.006 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Q 029357 154 LNIISTGVLYRIILKKKLSEIQWAAFILLCC 184 (194)
Q Consensus 154 ~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~ 184 (194)
+-++.|++.-++++.||.-..+|+.=.++..
T Consensus 33 ~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l 63 (248)
T d2r6gf1 33 TTLILSSAGLYIFANRKAYAWRYVYPGMAGM 63 (248)
T ss_dssp HHHHHHHHHHHHHSSSCCTTHHHHHHHHHHH
T ss_pred HHHHHHHheEEEEEccCccceehhhhHHHHH
Confidence 3457778888999999999999986554433
No 3
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=4.62 E-value=4.2e+02 Score=16.53 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=20.4
Q ss_pred HhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q 029357 151 LKNLNIISTGVLYRIILKKKLSEIQWAAFILLC 183 (194)
Q Consensus 151 l~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~ 183 (194)
+..+.-.....+-..+=...++..||..|..+.
T Consensus 9 l~r~~r~~~~~~~~~l~~~glt~~~~~~L~~l~ 41 (140)
T d3deua1 9 LARLVRIWRALIDHRLKPLELTQTHWVTLHNIH 41 (140)
T ss_dssp HHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 344444444444444434468999999998775
No 4
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.09 E-value=2.5e+02 Score=14.89 Aligned_cols=16 Identities=31% Similarity=0.725 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhhhhcc
Q 029357 173 EIQWAAFILLCCGCTTAQ 190 (194)
Q Consensus 173 ~~QW~aL~lL~~Gv~lvq 190 (194)
+.+| ++..++++++.|
T Consensus 5 Rv~g--l~~F~~~v~laQ 20 (37)
T d1vf5c3 5 RVKW--MIAFICLVMLAQ 20 (37)
T ss_dssp HHHH--HHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHH
Confidence 3444 444445555554
No 5
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=3.95 E-value=2.1e+02 Score=17.65 Aligned_cols=29 Identities=14% Similarity=0.376 Sum_probs=16.4
Q ss_pred chhhcccchhHHHHHHHHHHHHHHHhCCh
Q 029357 117 DEVIVYPIPAVLYLVKNLLQYYIFAYVDA 145 (194)
Q Consensus 117 ~~~l~~~vPA~lY~iqN~L~f~al~~lda 145 (194)
-|.....||+++=++=-...+-.+..+||
T Consensus 62 lEi~WtiIP~iil~~iav~s~~~~~~lDp 90 (91)
T d1fftb2 62 VEAVVWTVPILIIIFLAVLTWKTTHALEP 90 (91)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHSCTTCC
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 36666778887655444444444444444
No 6
>d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}
Probab=3.70 E-value=2e+02 Score=17.48 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=19.6
Q ss_pred CcccHHHHHHHHHHHHhhhhccc
Q 029357 169 KKLSEIQWAAFILLCCGCTTAQL 191 (194)
Q Consensus 169 rkLs~~QW~aL~lL~~Gv~lvql 191 (194)
.+||.+|+--+.++..|....++
T Consensus 21 ~~LT~rE~~vl~ll~~G~s~~eI 43 (87)
T d1p4wa_ 21 KRLSPKESEVLRLFAEGFLVTEI 43 (87)
T ss_dssp SSCCHHHHHHHHHHHHTCCHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCHHHH
Confidence 47999999999999999876654
No 7
>d1y6ia1 a.118.1.22 (A:1-82) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=3.64 E-value=1.7e+02 Score=18.34 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=14.9
Q ss_pred hHHHHHHhhhHHHHHHHHH
Q 029357 145 APGYQILKNLNIISTGVLY 163 (194)
Q Consensus 145 a~tfqvl~q~KIl~TAlfs 163 (194)
.-.||+++|.+-..|.-|.
T Consensus 56 GkaYq~L~~~~~~~~~eFL 74 (82)
T d1y6ia1 56 GNVYQTLRNLEQETITTQL 74 (82)
T ss_dssp HHHHHHHHHTCCHHHHHHH
T ss_pred chHHHHHHhcCcHHHHHHH
Confidence 4589999999888877664
No 8
>d1z3xa1 a.118.1.22 (A:1-87) GUN4-like protein Ycf53, N-terminal domain {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.09 E-value=2e+02 Score=18.26 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=15.7
Q ss_pred CChHHHHHHhhhHHHHHHHHH
Q 029357 143 VDAPGYQILKNLNIISTGVLY 163 (194)
Q Consensus 143 lda~tfqvl~q~KIl~TAlfs 163 (194)
++.-.||+++|.+-..|.-|.
T Consensus 59 V~GkaYq~L~~~~~~~~~eFL 79 (87)
T d1z3xa1 59 IRGQAYRLLFHSPEASVQAFL 79 (87)
T ss_dssp HHHHHHHHHHTCCCHHHHHHH
T ss_pred ehhHHHHHHHhcCcHHHHHHH
Confidence 345589999999888777654
No 9
>d1pz1a_ c.1.7.1 (A:) Putative oxidoreductase YhdN {Bacillus subtilis [TaxId: 1423]}
Probab=2.97 E-value=1.6e+02 Score=21.96 Aligned_cols=9 Identities=56% Similarity=0.881 Sum_probs=7.3
Q ss_pred CccccccCC
Q 029357 1 MEYRKIKDE 9 (194)
Q Consensus 1 ~~~~~~~~~ 9 (194)
|+||+.+.-
T Consensus 1 M~yr~lG~t 9 (333)
T d1pz1a_ 1 MEYTSIADT 9 (333)
T ss_dssp CCEEECTTS
T ss_pred CCCeECCCC
Confidence 899999863
No 10
>d1go4a_ d.135.1.1 (A:) The spindle assembly checkpoint protein mad2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.95 E-value=4.7e+02 Score=18.13 Aligned_cols=22 Identities=9% Similarity=0.079 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 029357 77 SVTTANFLVETLKCALSLAALA 98 (194)
Q Consensus 77 ~~st~v~l~E~lKl~isl~l~~ 98 (194)
...++.++.|++...+..+++.
T Consensus 6 ~k~S~~~v~e~l~~ai~~ILY~ 27 (196)
T d1go4a_ 6 LRGSAEIVAEFFSFGINSILYQ 27 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999983
Done!