BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029358
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain
Length = 323
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 79/191 (41%), Gaps = 57/191 (29%)
Query: 40 KVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILC--------------------------N 73
+V TW + +IF+K Y+ VP+ HW L ++C N
Sbjct: 108 RVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQN 167
Query: 74 FGGSFESKTRT---------------------------PCMLLLDSLEMSNPWRFEPDIR 106
+ ++ RT PC+L+LDSL+ ++ ++R
Sbjct: 168 DNKTIDNDLRTTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLR 227
Query: 107 KFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLE 166
+++ ++ + + + + + L PKVP+Q N +CG ++L ++ F + NF L
Sbjct: 228 EYLEVEWEVKLKTHRQFSKTNMVDLCPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFEL- 286
Query: 167 DYPYFMEKNWF 177
P +EK WF
Sbjct: 287 --PIHLEK-WF 294
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKG|B Chain B, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKH|A Chain A, Senp1-sumo2 Complex
Length = 225
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 22/147 (14%)
Query: 34 KPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLIL------CNFGGSFESKTRTPCM 87
K + V W K+ +FS +LVPI HW L ++ + S C
Sbjct: 84 KTAGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACR 143
Query: 88 LLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNF 147
+LL L+ + +D + E +L S+ ++PQQ NG +CG F
Sbjct: 144 ILLQYLKQES------------IDKKRKEFDTNGWQLFSK----KSQIPQQMNGSDCGMF 187
Query: 148 VLYFINLFVEGAPENFNLEDYPYFMEK 174
+ + + P NF + PYF ++
Sbjct: 188 ACKYADCITKDRPINFTQQHMPYFRKR 214
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt
pdb|2XPH|B Chain B, Crystal Structure Of Human Senp1 With The Bound Cobalt
Length = 238
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 21/147 (14%)
Query: 34 KPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLIL------CNFGGSFESKTRTPCM 87
K + V W K+ +FS +LVPI HW L ++ + S C
Sbjct: 96 KTAGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACR 155
Query: 88 LLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNF 147
+LL L+ + +D + E +L S+ ++PQQ NG +CG F
Sbjct: 156 ILLQYLKQES------------IDKKRKEFDTNGWQLFSKKS---QEIPQQMNGSDCGMF 200
Query: 148 VLYFINLFVEGAPENFNLEDYPYFMEK 174
+ + + P NF + PYF ++
Sbjct: 201 ACKYADCITKDRPINFTQQHMPYFRKR 227
>pdb|2IYC|A Chain A, Senp1 Native Structure
pdb|2IYC|B Chain B, Senp1 Native Structure
pdb|2IYD|A Chain A, Senp1 Covalent Complex With Sumo-2
Length = 226
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 21/147 (14%)
Query: 34 KPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLIL------CNFGGSFESKTRTPCM 87
K + V W K+ +FS +LVPI HW L ++ + S C
Sbjct: 84 KTAGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACR 143
Query: 88 LLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNF 147
+LL L+ + +D + E +L S+ ++PQQ NG +CG F
Sbjct: 144 ILLQYLKQES------------IDKKRKEFDTNGWQLFSKKS---QEIPQQMNGSDCGMF 188
Query: 148 VLYFINLFVEGAPENFNLEDYPYFMEK 174
+ + + P NF + PYF ++
Sbjct: 189 ACKYADCITKDRPINFTQQHMPYFRKR 215
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
pdb|2XRE|B Chain B, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
Length = 230
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 21/147 (14%)
Query: 34 KPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLIL------CNFGGSFESKTRTPCM 87
K + V W K+ +FS +LVPI HW L ++ + S C
Sbjct: 88 KTAGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACR 147
Query: 88 LLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNF 147
+LL L+ + +D + E +L S+ ++PQQ NG +CG F
Sbjct: 148 ILLQYLKQES------------IDKKRKEFDTNGWQLFSKKS---QEIPQQMNGSDCGMF 192
Query: 148 VLYFINLFVEGAPENFNLEDYPYFMEK 174
+ + + P NF + PYF ++
Sbjct: 193 ACKYADCITKDRPINFTQQHMPYFRKR 219
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1
pdb|1TH0|A Chain A, Structure Of Human Senp2
pdb|1TH0|B Chain B, Structure Of Human Senp2
Length = 226
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 13/162 (8%)
Query: 16 DKKAGFTYLD--SLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCN 73
+KK G+ L S +F K V W K ++F ++ +LVPI HW+L+++
Sbjct: 64 NKKQGYPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVI-- 121
Query: 74 FGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVP 133
R C+ LDS+ R + +++ D K + + L + P
Sbjct: 122 -------DLRKKCLKYLDSMGQKGH-RICEILLQYLQDESKTKRNSDLNLLEWTHHSMKP 173
Query: 134 -KVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEK 174
++PQQ NG +CG F + + P F P F +K
Sbjct: 174 HEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKK 215
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2G4D|C Chain C, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
Length = 205
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 21/147 (14%)
Query: 34 KPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLIL------CNFGGSFESKTRTPCM 87
K + V W K+ +FS +LVPI HW L ++ + S C
Sbjct: 63 KTAGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACR 122
Query: 88 LLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNF 147
+LL L+ + +D + E +L S+ ++PQQ NG + G F
Sbjct: 123 ILLQYLKQES------------IDKKRKEFDTNGWQLFSKKS---QEIPQQMNGSDSGMF 167
Query: 148 VLYFINLFVEGAPENFNLEDYPYFMEK 174
+ + + P NF + PYF ++
Sbjct: 168 ACKYADCITKDRPINFTQQHMPYFRKR 194
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap
pdb|2IY1|A Chain A, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|C Chain C, Senp1 (Mutant) Full Length Sumo1
Length = 226
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 21/147 (14%)
Query: 34 KPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLIL------CNFGGSFESKTRTPCM 87
K + V W K+ +FS +LVPI HW L ++ + S C
Sbjct: 84 KTAGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACR 143
Query: 88 LLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNF 147
+LL L+ + +D + E +L S+ ++PQQ NG + G F
Sbjct: 144 ILLQYLKQES------------IDKKRKEFDTNGWQLFSKKS---QEIPQQMNGSDAGMF 188
Query: 148 VLYFINLFVEGAPENFNLEDYPYFMEK 174
+ + + P NF + PYF ++
Sbjct: 189 ACKYADCITKDRPINFTQQHMPYFRKR 215
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2
pdb|2IO1|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|C Chain C, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|E Chain E, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO2|A Chain A, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
pdb|2IO3|A Chain A, Crystal Structure Of Human Senp2 In Complex With Rangap1-
Sumo-2
Length = 232
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 13/162 (8%)
Query: 16 DKKAGFTYLD--SLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCN 73
+KK G+ L S +F K V W K ++F ++ +LVPI HW+L+++
Sbjct: 70 NKKQGYPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVI-- 127
Query: 74 FGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVP 133
R C+ LDS+ R + +++ D K + + L + P
Sbjct: 128 -------DLRKKCLKYLDSMGQKGH-RICEILLQYLQDESKTKRNSDLNLLEWTHHSMKP 179
Query: 134 -KVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEK 174
++PQQ NG + G F + + P F P F +K
Sbjct: 180 HEIPQQLNGSDSGMFTCKYADYISRDKPITFTQHQMPLFRKK 221
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In
Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 221
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 57/134 (42%), Gaps = 24/134 (17%)
Query: 41 VLTWIKRKHIFSKKY--VLVPI-VCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMS- 96
V W+KRK K + PI + HW L G + K +T + +DSL
Sbjct: 87 VRRWMKRKKTQIDKLDKIFTPINLNQSHWAL-------GIIDLKKKT--IGYVDSLSNGP 137
Query: 97 NPWRFE--PDIRKFVMDIYKAEDRPETKELISR-IPLLVPKVPQQRNGEECGNFVLYFIN 153
N F D++K+VM+ E+K I L+ PQQ NG +CG +V
Sbjct: 138 NAMSFAILTDLQKYVME--------ESKHTIGEDFDLIHLDCPQQPNGYDCGIYVCMNTL 189
Query: 154 LFVEGAPENFNLED 167
AP +F+ +D
Sbjct: 190 YGSADAPLDFDYKD 203
>pdb|3RAU|A Chain A, Crystal Structure Of The Hd-Ptp Bro1 Domain
pdb|3RAU|B Chain B, Crystal Structure Of The Hd-Ptp Bro1 Domain
Length = 363
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 76 GSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLL---V 132
G FE+ R P M+ LD L+ + + F+P ++KFV+ Y E+ E + ++ LL
Sbjct: 1 GEFEAVPRMP-MIWLD-LKEAGDFHFQPAVKKFVLKNY-GENPEAYNEELKKLELLRQNA 57
Query: 133 PKVPQQRNGEECGNFVLYFINL 154
+VP R+ E C Y L
Sbjct: 58 VRVP--RDFEGCSVLRKYLGQL 77
>pdb|1KTB|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
pdb|1KTC|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
Length = 405
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 51 FSKKYVLVPIVCWRHWN---LLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRK 107
F+ + VL P HWN +LI+ NFG S+E + + M+ P D+R
Sbjct: 217 FTNQDVLQPFAGPGHWNDPDMLIIGNFGLSYEQSRSQMALWTI----MAAPLLMSTDLRT 272
Query: 108 F 108
Sbjct: 273 I 273
>pdb|1SXJ|E Chain E, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 354
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 26 SLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTP 85
SLW D YR S A L+ + F K P R L+L G+ + +T
Sbjct: 2 SLWVDKYRPKSLNA--LSHNEELTNFLKSLSDQP----RDLPHLLLYGPNGTGK---KTR 52
Query: 86 CMLLLDSLEMSNPWRFEPDIRKFV 109
CM LL+S+ +R + D+R+FV
Sbjct: 53 CMALLESIFGPGVYRLKIDVRQFV 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.463
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,303,379
Number of Sequences: 62578
Number of extensions: 263361
Number of successful extensions: 636
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 616
Number of HSP's gapped (non-prelim): 19
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)