Query 029358
Match_columns 194
No_of_seqs 147 out of 1046
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 19:04:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029358.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029358hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eay_A Sentrin-specific protea 100.0 1.3E-46 4.5E-51 318.3 13.0 177 12-192 65-309 (323)
2 1th0_A SMT3-, sentrin-specific 100.0 1.7E-38 5.7E-43 258.1 10.7 147 15-174 66-215 (226)
3 2xph_A Sentrin-specific protea 100.0 3.3E-38 1.1E-42 258.2 12.0 151 11-174 74-227 (238)
4 1euv_A ULP1 protease; SUMO hyd 100.0 2.6E-36 9E-41 244.4 7.6 150 5-172 53-208 (221)
5 2bkr_A Sentrin-specific protea 100.0 2.7E-34 9.1E-39 231.1 11.8 158 8-192 38-205 (212)
6 2oix_A Xanthomonas outer prote 100.0 6E-31 2E-35 207.9 6.3 147 19-192 28-177 (186)
7 4ekf_A Adenain; alpha and beta 93.4 1.2 4E-05 34.5 10.7 81 63-160 52-138 (204)
8 3k8u_A Putative ABC transporte 19.5 76 0.0026 22.5 2.9 22 136-157 9-30 (156)
9 1g6u_A Domain swapped dimer; d 17.3 79 0.0027 17.8 1.9 21 173-193 13-33 (48)
10 4ffe_X CPXV018 protein; viral 17.2 73 0.0025 22.4 2.2 24 170-193 123-147 (151)
No 1
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.3e-46 Score=318.28 Aligned_cols=177 Identities=23% Similarity=0.475 Sum_probs=148.5
Q ss_pred hcCcCCCCcEEEeccchhhhccCCC---------------CchhHHHhhhccCCCccceEEEeccCCCcceeEEEecCCC
Q 029358 12 SFSEDKKAGFTYLDSLWFDLYRKPS---------------SKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGG 76 (194)
Q Consensus 12 ~l~~~~~~~~~~~nsfF~~~l~~~~---------------~~~~v~rw~k~~~if~~d~i~iPin~~~HW~L~vi~~p~~ 76 (194)
+..++.+.++|+||||||++|.... +|++|+|||+++|||++|+||||||.+.||+|+|||+|+.
T Consensus 65 ~~~~~~~~r~h~FnSFFy~kL~~~~~~~~~~~~~~s~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~~~HW~LaVI~~P~~ 144 (323)
T 3eay_A 65 KASDELVERSHIFSSFFYKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWL 144 (323)
T ss_dssp TSCHHHHHTEEECCTHHHHHHSCC--------CCSCHHHHHHTTSGGGGTTCCGGGCSEEEEEEEETTEEEEEEEECTTC
T ss_pred hccccccCcEEEEchHHHHHHHhcccccccccccchhHHHHHHHHHHHHhhcccccCCEEEEecCCCCceEEEEEecCCc
Confidence 3344556899999999999998642 4889999999999999999999999999999999999964
Q ss_pred Cc-----------------C------------------------------------cCCCCCeEEEeeCCCCCCCcchHH
Q 029358 77 SF-----------------E------------------------------------SKTRTPCMLLLDSLEMSNPWRFEP 103 (194)
Q Consensus 77 ~~-----------------~------------------------------------~~~~~~~i~~~DSl~~~~~~~~~~ 103 (194)
.. | ..++.+||++||||++....++.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~ 224 (323)
T 3eay_A 145 EEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQ 224 (323)
T ss_dssp SSCBCC-------------------------------------------------CCCCBCSEEEEECSSCCSSHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHH
Confidence 10 0 013567999999999976566778
Q ss_pred HHHHHHHHHHHHhCCCCCcccCCCccccCCCCCCCCCCCCcHHHHHHHHHHHhcCCCCCcCCCCCcchhhhCCCCHHHHH
Q 029358 104 DIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLD 183 (194)
Q Consensus 104 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~~d~~~~r~~~wf~~~~i~ 183 (194)
.|++||..||+.+++....+..+.|+...+.+|+|.|++|||||||+||++++.+++.+|++ |.. ..+||++++|.
T Consensus 225 ~Lr~YL~~E~~~k~~~~~~f~~~~~~~~~~~~P~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~---~~~-~~~wf~~~~i~ 300 (323)
T 3eay_A 225 NLREYLEVEWEVKLKTHRQFSKTNMVDLCPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFEL---PIH-LEKWFPRHVIK 300 (323)
T ss_dssp HHHHHHHHHHHHHHSSCCCCCTTTSCEECCBCCCCCSTTCHHHHHHHHHHHHHHSCCCCCCS---SCB-CTTSSCHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcCCCHhHceeccCCCCCcCCCCcHHHHHHHHHHHHHhCCcccccc---ccc-cccCCCHHHHH
Confidence 99999999999876544445556777677889999999999999999999999999999986 332 36899999999
Q ss_pred HHHHHhhhc
Q 029358 184 CFCERLNSS 192 (194)
Q Consensus 184 ~~R~~i~~~ 192 (194)
.+|++|++|
T Consensus 301 ~kR~ei~~L 309 (323)
T 3eay_A 301 TKREDIREL 309 (323)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999976
No 2
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=100.00 E-value=1.7e-38 Score=258.10 Aligned_cols=147 Identities=21% Similarity=0.417 Sum_probs=126.3
Q ss_pred cCCCCcEEEeccchhhhccCCCCchhHHHhhhccCCCccceEEEeccCCCcceeEEEecCCCCcCcCCCCCeEEEeeCCC
Q 029358 15 EDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLE 94 (194)
Q Consensus 15 ~~~~~~~~~~nsfF~~~l~~~~~~~~v~rw~k~~~if~~d~i~iPin~~~HW~L~vi~~p~~~~~~~~~~~~i~~~DSl~ 94 (194)
++..+++|+||||||++|.+ .+|++|++|++++++|++++||||||.+.||+|+||+.+ .++|.+||||+
T Consensus 66 ~~~~~~~~~f~s~f~~~l~~-~~~~~v~~w~~~~~l~~~~~i~iPin~~~HW~l~vi~~~---------~~~i~~~DSl~ 135 (226)
T 1th0_A 66 KQGYPALHVFSTFFYPKLKS-GGYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVIDLR---------KKCLKYLDSMG 135 (226)
T ss_dssp HHTCCCEEECCTTHHHHHHH-HTGGGTGGGGTTCCGGGSSEEEEEEEETTEEEEEEEETT---------TTEEEEECTTC
T ss_pred hccCCcEEEEeHHHHHHhhh-cccHHHHHHhhcCCcccCCEEEEeEEeCcEEEEEEEEcC---------CCceEEEcCCC
Confidence 34568999999999999987 589999999999999999999999999999999999974 47999999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHhCCCCCcccCCCccc---cCCCCCCCCCCCCcHHHHHHHHHHHhcCCCCCcCCCCCcch
Q 029358 95 MSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPL---LVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYF 171 (194)
Q Consensus 95 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~P~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~~d~~~~ 171 (194)
+.+. .+...|++||..++..+.+. ....+.|+. ....+|||.||+|||||||+||++++.+.|.+|+++|||.+
T Consensus 136 ~~~~-~~~~~l~~~l~~e~~~k~~~--~~~~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~~~~~~~~~~~f~q~dm~~~ 212 (226)
T 1th0_A 136 QKGH-RICEILLQYLQDESKTKRNS--DLNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLF 212 (226)
T ss_dssp CCCH-HHHHHHHHHHHHHHHHHTSC--CCCGGGCEEEECCTTTSCCCCSSSCHHHHHHHHHHHHTTTCCCCCCGGGHHHH
T ss_pred CCch-HHHHHHHHHHHHHHHHhcCC--CCCcccceeccccCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCccChhhHHHH
Confidence 8875 45568999999888765332 233356764 35799999999999999999999999999999999999999
Q ss_pred hhh
Q 029358 172 MEK 174 (194)
Q Consensus 172 r~~ 174 (194)
|++
T Consensus 213 R~~ 215 (226)
T 1th0_A 213 RKK 215 (226)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 3
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=100.00 E-value=3.3e-38 Score=258.23 Aligned_cols=151 Identities=22% Similarity=0.350 Sum_probs=127.5
Q ss_pred hhcCcCCCCcEEEeccchhhhccCCCCchhHHHhhhccCCCccceEEEeccCCCcceeEEEecCCCCcCcCCCCCeEEEe
Q 029358 11 RSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLL 90 (194)
Q Consensus 11 ~~l~~~~~~~~~~~nsfF~~~l~~~~~~~~v~rw~k~~~if~~d~i~iPin~~~HW~L~vi~~p~~~~~~~~~~~~i~~~ 90 (194)
.+...+...++|+||||||++|.. .+|++|++|++++++|++|+||||||.+.||+|+||+.+ .++|.+|
T Consensus 74 ~~~~~~~~~~~~~f~sff~~~l~~-~~~~~v~~w~~~~~l~~~~~i~iPin~~~HW~L~vi~~~---------~~~i~~~ 143 (238)
T 2xph_A 74 ERSKEKGLPSVHAFNTFFFTKLKT-AGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFR---------KKNITYY 143 (238)
T ss_dssp HHTTSTTSCCEEECCTTTTHHHHT-TCHHHHTTTTTTCCGGGSSEEEEEEEETTEEEEEEEETT---------TTEEEEE
T ss_pred HhhhhcCCCceeeeecHHHHHhhh-cccHHHHHHhccCCcccCCEEEEcccCCCceEEEEEEcc---------cceEEEe
Confidence 333344567899999999999987 589999999999999999999999999999999999985 4799999
Q ss_pred eCCCCCCCcchHHHHHHHHHHHHHHhCCCCCcccCCCccc---cCCCCCCCCCCCCcHHHHHHHHHHHhcCCCCCcCCCC
Q 029358 91 DSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPL---LVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLED 167 (194)
Q Consensus 91 DSl~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~P~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~~d 167 (194)
|||++.+.. ....+++||..++..+.+. .+..+.|+. ....+|||.||+|||||||+||++++.+.|.+|+++|
T Consensus 144 DSl~~~~~~-~~~~l~~~L~~e~~~k~~~--~~~~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~~~f~q~d 220 (238)
T 2xph_A 144 DSMGGINNE-ACRILLQYLKQESIDKKRK--EFDTNGWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPINFTQQH 220 (238)
T ss_dssp CTTCCCCHH-HHHHHHHHHHHHHHHHHCS--CCCCTTCEEEECCSSSSCCCSBGGGHHHHHHHHHHHHHTTCCCCCCGGG
T ss_pred ecccCCCHH-HHHHHHHHHHHHHHHhcCC--CcCcccceecccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCcChhh
Confidence 999988754 4457889999888754321 233456764 3678999999999999999999999999999999999
Q ss_pred Ccchhhh
Q 029358 168 YPYFMEK 174 (194)
Q Consensus 168 ~~~~r~~ 174 (194)
||.+|++
T Consensus 221 m~~~R~~ 227 (238)
T 2xph_A 221 MPYFRKR 227 (238)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998864
No 4
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=100.00 E-value=2.6e-36 Score=244.44 Aligned_cols=150 Identities=22% Similarity=0.291 Sum_probs=116.7
Q ss_pred HHHHHHhhcCcCCCCcEEEeccchhhhccCCCCchhHHHhhh--ccCCCccceEEEeccCC-CcceeEEEecCCCCcCcC
Q 029358 5 ICSNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIK--RKHIFSKKYVLVPIVCW-RHWNLLILCNFGGSFESK 81 (194)
Q Consensus 5 ~~~~~~~~l~~~~~~~~~~~nsfF~~~l~~~~~~~~v~rw~k--~~~if~~d~i~iPin~~-~HW~L~vi~~p~~~~~~~ 81 (194)
|+..+...|... .+++|+||||||++|.+ .+|++|+||++ +++++++|+||||||.+ .||+|+||+.+
T Consensus 53 vI~fy~~~l~~~-~~~~~~f~s~f~~~l~~-~~~~~v~rw~~~~~~~~~~~~~i~iPin~~~~HW~l~vi~~~------- 123 (221)
T 1euv_A 53 IIEFFMKYIEKS-TPNTVAFNSFFYTNLSE-RGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLK------- 123 (221)
T ss_dssp HHHHHHHHHHHH-STTEEECCTHHHHHHHH-HTGGGTTTTTGGGTSCGGGCSEEEEEEEETTTEEEEEEEETT-------
T ss_pred HHHHHHHHHHhc-CCCeEEEEcHHHHHhhh-hccHHHHHHHHhccCCcccCCEEEEEEEcCCCeEEEEEEEcC-------
Confidence 455555555333 46899999999999987 58999999998 67999999999999984 99999999985
Q ss_pred CCCCeEEEeeCCCCCCCc---chHHHHHHHHHHHHHHhCCCCCcccCCCccccCCCCCCCCCCCCcHHHHHHHHHHHhcC
Q 029358 82 TRTPCMLLLDSLEMSNPW---RFEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEG 158 (194)
Q Consensus 82 ~~~~~i~~~DSl~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~Q~N~~DCGvfvl~~~e~~~~~ 158 (194)
.++|.+||||++.... .+.+.+++||..+++.+. ...|+.....+|||.||+|||||||+||++++.+
T Consensus 124 --~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~e~~~~~-------~~~~~~~~~~~PqQ~N~~DCGvfv~~~~~~~~~~ 194 (221)
T 1euv_A 124 --KKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTI-------GEDFDLIHLDCPQQPNGYDCGIYVCMNTLYGSAD 194 (221)
T ss_dssp --TTEEEEECSSCCSCCHHHHHHHHHHHHHHHHHTTSSS-------CTTCEEEEECCCCCSSSSTHHHHHHHHHHHHHTT
T ss_pred --CCEEEEEecCCCCCcchHHHHHHHHHHHHHHHHHHhc-------CCCceEeecCCCCCCCCcCHHHHHHHHHHHHhCC
Confidence 3699999999975432 345678888877654221 1245566679999999999999999999999998
Q ss_pred CCCCcCCCCCcchh
Q 029358 159 APENFNLEDYPYFM 172 (194)
Q Consensus 159 ~~~~f~~~d~~~~r 172 (194)
.|..|+++||+.+|
T Consensus 195 ~~l~f~~~d~~~~R 208 (221)
T 1euv_A 195 APLDFDYKDAIRMR 208 (221)
T ss_dssp CCCCCCHHHHHHHH
T ss_pred CCCCcCHHHHHHHH
Confidence 77665555444444
No 5
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=100.00 E-value=2.7e-34 Score=231.14 Aligned_cols=158 Identities=14% Similarity=0.205 Sum_probs=120.2
Q ss_pred HHHhhcCcCCCCcEEEec---cchhhhccCCCCchhHHHhhhccCCCccceEEEeccC-------CCcceeEEEecCCCC
Q 029358 8 NLWRSFSEDKKAGFTYLD---SLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVC-------WRHWNLLILCNFGGS 77 (194)
Q Consensus 8 ~~~~~l~~~~~~~~~~~n---sfF~~~l~~~~~~~~v~rw~k~~~if~~d~i~iPin~-------~~HW~L~vi~~p~~~ 77 (194)
.|.+...++..+++|+|| ||||..+ + +|++|++|+++++++++++||||||. +.||+|+||+.+.
T Consensus 38 ~L~~~~~~~~~~~~~~~~p~~s~f~~~~-~--~~~~v~~~~~~~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~-- 112 (212)
T 2bkr_A 38 YFANSQFHDSSDHVSFISPEVTQFIKCT-S--NPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDK-- 112 (212)
T ss_dssp HHHHTTTGGGTTTEEEECHHHHHHHHHC-C--CHHHHHHHHGGGTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGG--
T ss_pred HHHHhhccCCCCcEEEEChHHHHHHHhC-C--CHHHHHHHhcccccccCCEEEEEEecCCCCCCCCCCeEEEEEEecC--
Confidence 344444444568899999 9999655 3 47899999999999999999999995 7999999999863
Q ss_pred cCcCCCCCeEEEeeCCCCCCCcchHHHHHHHHHHHHHHhCCCCCcccCCCccccCCCCCCCCCCCCcHHHHHHHHHHHhc
Q 029358 78 FESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVE 157 (194)
Q Consensus 78 ~~~~~~~~~i~~~DSl~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~Q~N~~DCGvfvl~~~e~~~~ 157 (194)
++|.+||||++.+...+ ..+.+.|...+..... .+++..+.+|||.||+|||||||+||++++.
T Consensus 113 -------~~i~~~DSl~~~n~~~~-~~l~~~l~~~l~~~~~--------~~~~~~~~~PqQ~N~~DCGvfvl~~~~~l~~ 176 (212)
T 2bkr_A 113 -------NSFFHYDSHSRSNSVHA-KQVAEKLEAFLGRKGD--------KLAFVEEKAPAQQNSYDCGMYVICNTEALCQ 176 (212)
T ss_dssp -------TEEEEECSSTTTTHHHH-HHHHHHHHHHHSCTTC--------CCCEEECCCCCCSSSSTHHHHHHHHHHHHHH
T ss_pred -------CeEEEEeCCCCCCHHHH-HHHHHHHHHHhCCccc--------cceEeECCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 69999999998775432 2444555543322111 2345567899999999999999999999998
Q ss_pred CCCCCcCCCCCcchhhhCCCCHHHHHHHHHHhhhc
Q 029358 158 GAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNSS 192 (194)
Q Consensus 158 ~~~~~f~~~d~~~~r~~~wf~~~~i~~~R~~i~~~ 192 (194)
+.... +... ...||++++|.++|++|+++
T Consensus 177 ~~~~~---~~~~---~~~~~~~~~i~~~R~~i~~l 205 (212)
T 2bkr_A 177 NFFRQ---QTES---LLQLLTPAYITKKRGEWKDL 205 (212)
T ss_dssp HHHSC---CCCC---HHHHCCHHHHHHHHHHHHHH
T ss_pred Hhhhc---Cccc---ccccCCHHHHHHHHHHHHHH
Confidence 85221 1111 35799999999999999875
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=99.96 E-value=6e-31 Score=207.87 Aligned_cols=147 Identities=14% Similarity=0.132 Sum_probs=98.1
Q ss_pred CcEEEeccchhhhccCC--CCchhHHHhhhccCCCccceEEEeccC-CCcceeEEEecCCCCcCcCCCCCeEEEeeCCCC
Q 029358 19 AGFTYLDSLWFDLYRKP--SSKAKVLTWIKRKHIFSKKYVLVPIVC-WRHWNLLILCNFGGSFESKTRTPCMLLLDSLEM 95 (194)
Q Consensus 19 ~~~~~~nsfF~~~l~~~--~~~~~v~rw~k~~~if~~d~i~iPin~-~~HW~L~vi~~p~~~~~~~~~~~~i~~~DSl~~ 95 (194)
++++|+|+++...+... +++.++.+|++..++ +++||||||. +.||+|+||+.+++ +-++|.+||||++
T Consensus 28 ~~v~f~~p~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~i~iPin~~~~HWsLlvi~~~~~------~~~~~~~~DSl~~ 99 (186)
T 2oix_A 28 HLLHFADSQVVTMLSSADPDQQARAQRLLAGDDI--PPIVFLPINQPNAHWSLLVVDRRNK------DAVAAYHYDSMAQ 99 (186)
T ss_dssp GGEEECCHHHHHHTTCSSHHHHHHHHHHHHSTTS--CSEEEEEEEETTTEEEEEEEECSST------TSCEEEEECCCSS
T ss_pred ceEEEECHHHHHHHHhCCHHHHHHHHHHcccccc--cCEEEEEEeCCCCccEEEEEECCCC------eeeeeEEEcCCCC
Confidence 56999997554444332 246688888887665 9999999998 79999999998753 1134599999999
Q ss_pred CCCcchHHHHHHHHHHHHHHhCCCCCcccCCCccccCCCCCCCCCCCCcHHHHHHHHHHHhcCCCCCcCCCCCcchhhhC
Q 029358 96 SNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKN 175 (194)
Q Consensus 96 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~~d~~~~r~~~ 175 (194)
.+.. ...+.+.|...+ +.+ ..++...++|||.||+|||||||+||++++.+.... . + -...
T Consensus 100 ~~~~--~~~l~~~l~~~l---~~~-------~~~~~~~~~PqQ~Ng~DCGvfv~~~~~~l~~~~~~~--~---~--~~~~ 160 (186)
T 2oix_A 100 KDPQ--QRYLADMAAYHL---GLD-------YQQTHEMPIAIQSDGYSAGDHVLTGIEVLAHRVLDG--T---F--DYAG 160 (186)
T ss_dssp CCHH--HHHHHHHHHHHT---TCC-------GGGCEEECBCCCC--CCHHHHHHHHHHHHHHHHHHT--C---T--TSTT
T ss_pred CCHH--HHHHHHHHHHHh---CCC-------ccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhc--C---c--cCCC
Confidence 6542 112333333211 111 112445689999999999999999999998653110 0 0 1135
Q ss_pred CCCHHHHHHHHHHhhhc
Q 029358 176 WFTAEDLDCFCERLNSS 192 (194)
Q Consensus 176 wf~~~~i~~~R~~i~~~ 192 (194)
||++++|+++|++|++|
T Consensus 161 ~~~~~~i~~~R~~i~~l 177 (186)
T 2oix_A 161 GRDLTDIEPDRGLIRDR 177 (186)
T ss_dssp TTCBTTCCCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 88888888888887764
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=93.41 E-value=1.2 Score=34.46 Aligned_cols=81 Identities=19% Similarity=0.260 Sum_probs=49.2
Q ss_pred CCcceeEEEecCCCCcCcCCCCCeEEEeeCCCCCCCcchHHHHHHHHHHHH----HHhCCCCCcccCC-Cccc-cCCCCC
Q 029358 63 WRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIY----KAEDRPETKELIS-RIPL-LVPKVP 136 (194)
Q Consensus 63 ~~HW~L~vi~~p~~~~~~~~~~~~i~~~DSl~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~-~~~~-~~~~~P 136 (194)
+.||.-..-+. ...+++.+|++|=++. ++. ++-.-+| +...-. ..++ .++. .....-
T Consensus 52 GvHWiA~Aw~P---------~s~~~YmFDPfG~sd~-~L~----qiY~F~Y~~llkRSAL~---sspdRCv~LvkstqsV 114 (204)
T 4ekf_A 52 GVHWMAFAWNP---------RSKTCYLFEPFGFSDQ-RLK----QVYQFEYESLLRRSAIA---SSPDRCITLEKSTQSV 114 (204)
T ss_dssp CCCEEEEEEET---------TTTEEEEECTBTTCSH-HHH----HHHHHHHHHHHHHHCC-----------EEEECCSBC
T ss_pred ceeEEEeEecC---------CcceEEEeCCCCCCHH-HHH----HHhhhhHHHHHHHHhhc---CCCCceeEEEeccccc
Confidence 48998888753 3478999999998775 233 2222222 211110 1112 2333 334455
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCCC
Q 029358 137 QQRNGEECGNFVLYFINLFVEGAP 160 (194)
Q Consensus 137 ~Q~N~~DCGvfvl~~~e~~~~~~~ 160 (194)
|=.++--||+|.+.|..+|..-+.
T Consensus 115 Qcp~SaACGLFC~lFL~aF~~~p~ 138 (204)
T 4ekf_A 115 QGPNSAAAGLFCCMFLHAFANWPQ 138 (204)
T ss_dssp SCTTCCCHHHHHHHHHHHHHHCTT
T ss_pred cCcCchhHHHHHHHHHHHHHhCCC
Confidence 666899999999999999997763
No 8
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=19.50 E-value=76 Score=22.48 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=17.7
Q ss_pred CCCCCCCCcHHHHHHHHHHHhc
Q 029358 136 PQQRNGEECGNFVLYFINLFVE 157 (194)
Q Consensus 136 P~Q~N~~DCGvfvl~~~e~~~~ 157 (194)
-.|.+..|||+-.|..+-.+..
T Consensus 9 ~~Q~~~~dcglacLa~i~~~~g 30 (156)
T 3k8u_A 9 VPQIDTRDCGPAVLASVAKHYG 30 (156)
T ss_dssp CCCSSTTCHHHHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHHHhC
Confidence 4588889999999988776653
No 9
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=17.33 E-value=79 Score=17.80 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=17.1
Q ss_pred hhCCCCHHHHHHHHHHhhhcc
Q 029358 173 EKNWFTAEDLDCFCERLNSSE 193 (194)
Q Consensus 173 ~~~wf~~~~i~~~R~~i~~~~ 193 (194)
.+.-|+|++..+.-.++..||
T Consensus 13 kkegfspeelaaleselqale 33 (48)
T 1g6u_A 13 KKEGFSPEELAALESELQALE 33 (48)
T ss_dssp HHTTCSHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHH
Confidence 367899999988888887776
No 10
>4ffe_X CPXV018 protein; viral immune evasion proteins, structural genomics, NKG2D DE ligand, niaid, national institute of allergy and infectious diseases; 2.25A {Cowpox virus}
Probab=17.18 E-value=73 Score=22.39 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=17.5
Q ss_pred chhhhCCCCHHH-HHHHHHHhhhcc
Q 029358 170 YFMEKNWFTAED-LDCFCERLNSSE 193 (194)
Q Consensus 170 ~~r~~~wf~~~~-i~~~R~~i~~~~ 193 (194)
-||.+.||..++ |--+|.-+|+.|
T Consensus 123 ~frl~kwfd~edci~~lrslvr~me 147 (151)
T 4ffe_X 123 EFRLKKWFDGEDCIMHLRSLVRKME 147 (151)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcCcchHHHHHHHHHHHhh
Confidence 478899999765 566776666655
Done!