Query 029359
Match_columns 194
No_of_seqs 211 out of 1217
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 11:39:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029359.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029359hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4754 Predicted phosphoglyce 99.9 2.6E-24 5.7E-29 172.6 12.0 166 2-178 79-248 (248)
2 PRK13463 phosphatase PhoE; Pro 99.9 2.8E-24 6.1E-29 174.1 10.2 133 2-161 56-189 (203)
3 PRK14116 gpmA phosphoglyceromu 99.9 2.8E-24 6.1E-29 177.2 10.1 138 2-162 57-220 (228)
4 PRK14119 gpmA phosphoglyceromu 99.9 5.6E-24 1.2E-28 175.3 10.3 137 2-161 57-219 (228)
5 PRK15004 alpha-ribazole phosph 99.9 5.5E-24 1.2E-28 171.6 10.0 132 2-161 54-186 (199)
6 PRK14117 gpmA phosphoglyceromu 99.9 6.7E-24 1.4E-28 175.2 10.7 137 2-161 57-219 (230)
7 PRK14118 gpmA phosphoglyceromu 99.9 2.2E-23 4.8E-28 171.8 10.0 137 2-161 56-218 (227)
8 TIGR03162 ribazole_cobC alpha- 99.9 3.1E-23 6.8E-28 163.5 9.7 126 2-156 51-177 (177)
9 PRK14120 gpmA phosphoglyceromu 99.9 5.2E-23 1.1E-27 171.9 10.7 137 2-161 60-220 (249)
10 PRK03482 phosphoglycerate muta 99.9 1.6E-22 3.5E-27 164.8 11.4 132 2-161 55-187 (215)
11 TIGR03848 MSMEG_4193 probable 99.9 1.2E-22 2.5E-27 164.3 10.3 130 2-161 54-189 (204)
12 TIGR01258 pgm_1 phosphoglycera 99.9 9.9E-23 2.2E-27 169.8 9.5 137 2-161 56-218 (245)
13 PRK13462 acid phosphatase; Pro 99.9 3E-22 6.5E-27 162.5 12.0 123 2-161 61-184 (203)
14 PRK01112 phosphoglyceromutase; 99.9 1.8E-22 3.9E-27 166.6 10.8 116 40-162 101-219 (228)
15 PTZ00123 phosphoglycerate muta 99.9 4.7E-22 1E-26 164.8 10.4 137 2-161 44-206 (236)
16 PRK01295 phosphoglyceromutase; 99.9 7.8E-22 1.7E-26 160.3 10.8 136 2-162 58-196 (206)
17 PRK14115 gpmA phosphoglyceromu 99.9 9.8E-22 2.1E-26 164.0 11.0 148 2-172 56-230 (247)
18 PRK07238 bifunctional RNase H/ 99.9 1.2E-21 2.6E-26 171.9 10.4 131 2-161 226-357 (372)
19 COG0406 phoE Broad specificity 99.9 2.4E-21 5.1E-26 156.7 11.0 133 2-162 58-191 (208)
20 PTZ00322 6-phosphofructo-2-kin 99.8 5.1E-19 1.1E-23 165.7 11.6 147 2-161 474-627 (664)
21 PF00300 His_Phos_1: Histidine 99.7 3.3E-18 7.1E-23 131.0 2.8 102 2-128 55-158 (158)
22 smart00855 PGAM Phosphoglycera 99.7 6.4E-17 1.4E-21 124.9 6.3 97 2-128 56-155 (155)
23 PTZ00122 phosphoglycerate muta 99.6 1.5E-14 3.3E-19 123.8 9.2 113 2-161 161-277 (299)
24 KOG0235 Phosphoglycerate mutas 99.5 3.7E-13 7.9E-18 109.7 11.9 135 2-159 61-199 (214)
25 cd07067 HP_PGM_like Histidine 99.3 9.5E-12 2.1E-16 95.3 8.0 60 99-161 84-144 (153)
26 COG0588 GpmA Phosphoglycerate 99.3 7.4E-12 1.6E-16 101.3 7.5 145 3-170 58-229 (230)
27 KOG0234 Fructose-6-phosphate 2 98.9 3.9E-09 8.6E-14 93.6 9.3 110 2-140 293-402 (438)
28 cd07040 HP Histidine phosphata 98.8 1.5E-08 3.4E-13 76.8 7.7 60 99-161 82-144 (153)
29 KOG3734 Predicted phosphoglyce 98.5 5.7E-07 1.2E-11 75.7 9.4 109 2-134 99-215 (272)
30 KOG4609 Predicted phosphoglyce 98.5 7.3E-07 1.6E-11 72.6 8.3 123 3-171 144-272 (284)
31 TIGR00249 sixA phosphohistidin 97.8 0.00026 5.5E-09 54.9 9.5 54 101-161 88-141 (152)
32 PRK10848 phosphohistidine phos 97.0 0.0051 1.1E-07 48.0 8.5 53 100-159 87-139 (159)
33 PRK15416 lipopolysaccharide co 96.7 0.011 2.3E-07 48.1 8.5 24 110-133 148-171 (201)
34 PRK06193 hypothetical protein; 94.2 0.085 1.8E-06 43.1 4.7 40 90-130 133-172 (206)
35 PF12048 DUF3530: Protein of u 71.0 14 0.00031 31.8 6.3 42 95-136 174-215 (310)
36 PF14606 Lipase_GDSL_3: GDSL-l 70.0 4.5 9.7E-05 32.3 2.8 30 93-122 72-102 (178)
37 PRK06193 hypothetical protein; 68.8 3.2 7E-05 33.8 1.8 16 2-17 103-118 (206)
38 PRK00865 glutamate racemase; P 68.6 33 0.00072 28.6 8.0 66 62-130 20-88 (261)
39 COG2062 SixA Phosphohistidine 61.7 4.3 9.4E-05 31.9 1.2 43 113-161 101-143 (163)
40 PF06919 Phage_T4_Gp30_7: Phag 58.3 7.5 0.00016 28.4 1.8 31 40-70 63-94 (121)
41 PRK14484 phosphotransferase ma 55.3 19 0.0004 27.0 3.7 39 115-165 3-42 (124)
42 COG1134 TagH ABC-type polysacc 49.8 27 0.00058 29.4 4.1 28 95-123 180-207 (249)
43 PF03610 EIIA-man: PTS system 48.7 16 0.00035 26.3 2.4 19 115-133 1-19 (116)
44 TIGR00067 glut_race glutamate 48.3 1.3E+02 0.0027 25.1 8.0 59 63-124 14-73 (251)
45 PLN02517 phosphatidylcholine-s 48.3 26 0.00057 33.3 4.2 34 90-123 188-222 (642)
46 cd00006 PTS_IIA_man PTS_IIA, P 45.6 24 0.00052 25.8 2.9 19 115-133 2-20 (122)
47 TIGR00824 EIIA-man PTS system, 45.0 26 0.00056 25.6 3.0 19 115-133 3-21 (116)
48 COG1136 SalX ABC-type antimicr 43.0 41 0.00088 27.9 4.2 28 101-128 181-208 (226)
49 PF09370 TIM-br_sig_trns: TIM- 41.8 18 0.00039 30.7 1.9 39 90-129 190-228 (268)
50 PF02450 LCAT: Lecithin:choles 41.3 34 0.00073 30.4 3.7 31 93-123 98-128 (389)
51 COG3412 Uncharacterized protei 40.9 31 0.00066 26.1 2.8 42 115-167 4-45 (129)
52 cd04256 AAK_P5CS_ProBA AAK_P5C 40.3 33 0.00071 29.2 3.3 31 96-127 31-61 (284)
53 PRK04946 hypothetical protein; 39.8 1.1E+02 0.0023 24.5 6.0 45 90-135 101-148 (181)
54 COG2062 SixA Phosphohistidine 39.2 1.1E+02 0.0024 24.0 5.9 16 2-17 55-70 (163)
55 COG1121 ZnuC ABC-type Mn/Zn tr 38.5 42 0.00091 28.3 3.6 20 104-124 181-200 (254)
56 TIGR02364 dha_pts dihydroxyace 38.0 60 0.0013 24.2 4.1 17 115-131 2-19 (125)
57 COG1116 TauB ABC-type nitrate/ 37.7 39 0.00084 28.5 3.3 38 92-129 156-197 (248)
58 PF01764 Lipase_3: Lipase (cla 36.5 1.6E+02 0.0035 21.1 6.3 57 96-161 45-104 (140)
59 COG0693 ThiJ Putative intracel 36.3 66 0.0014 24.9 4.3 45 89-134 73-121 (188)
60 COG4525 TauB ABC-type taurine 35.5 45 0.00097 27.7 3.2 39 92-130 158-200 (259)
61 KOG2029 Uncharacterized conser 34.8 1E+02 0.0023 29.4 5.8 121 45-178 457-590 (697)
62 TIGR01166 cbiO cobalt transpor 34.7 61 0.0013 25.1 3.9 24 98-122 163-186 (190)
63 smart00195 DSPc Dual specifici 34.4 94 0.002 22.6 4.7 38 91-129 57-94 (138)
64 cd03255 ABC_MJ0796_Lo1CDE_FtsE 33.7 61 0.0013 25.6 3.8 27 99-125 177-203 (218)
65 cd03229 ABC_Class3 This class 33.1 68 0.0015 24.7 3.9 26 99-124 137-162 (178)
66 cd03293 ABC_NrtD_SsuB_transpor 32.9 63 0.0014 25.7 3.8 25 100-124 169-193 (220)
67 COG2893 ManX Phosphotransferas 32.8 46 0.001 25.5 2.8 19 115-133 3-21 (143)
68 PRK09191 two-component respons 32.3 1.6E+02 0.0035 23.5 6.2 43 91-133 115-157 (261)
69 cd03237 ABC_RNaseL_inhibitor_d 32.2 66 0.0014 26.5 3.8 26 100-125 153-178 (246)
70 PF07819 PGAP1: PGAP1-like pro 32.1 74 0.0016 25.9 4.1 33 90-122 55-93 (225)
71 KOG2369 Lecithin:cholesterol a 32.1 53 0.0012 30.2 3.4 36 90-125 157-193 (473)
72 KOG2728 Uncharacterized conser 31.9 44 0.00095 28.4 2.7 39 90-128 7-45 (302)
73 COG4586 ABC-type uncharacteriz 30.8 60 0.0013 28.1 3.4 28 97-124 191-218 (325)
74 cd03259 ABC_Carb_Solutes_like 30.7 72 0.0016 25.2 3.7 27 98-124 166-192 (213)
75 cd03267 ABC_NatA_like Similar 30.6 79 0.0017 25.6 4.0 26 99-124 190-215 (236)
76 cd03296 ABC_CysA_sulfate_impor 30.6 71 0.0015 25.8 3.8 26 99-124 173-198 (239)
77 cd03261 ABC_Org_Solvent_Resist 30.5 71 0.0015 25.7 3.7 24 101-124 175-198 (235)
78 PF05990 DUF900: Alpha/beta hy 30.1 1.2E+02 0.0026 24.8 5.0 43 91-133 69-112 (233)
79 COG1122 CbiO ABC-type cobalt t 29.6 71 0.0015 26.4 3.6 28 100-127 176-203 (235)
80 cd03222 ABC_RNaseL_inhibitor T 29.4 1E+02 0.0022 24.2 4.3 27 99-125 108-134 (177)
81 COG1416 Uncharacterized conser 29.2 1.2E+02 0.0026 22.4 4.3 34 98-131 13-50 (112)
82 PF13479 AAA_24: AAA domain 28.8 82 0.0018 25.2 3.8 37 91-127 105-141 (213)
83 TIGR02315 ABC_phnC phosphonate 28.6 79 0.0017 25.5 3.7 25 100-124 183-207 (243)
84 cd03258 ABC_MetN_methionine_tr 28.6 79 0.0017 25.3 3.7 23 101-123 179-201 (233)
85 cd03256 ABC_PhnC_transporter A 28.5 83 0.0018 25.3 3.8 25 101-125 183-207 (241)
86 PRK11629 lolD lipoprotein tran 27.9 89 0.0019 25.1 3.9 25 100-124 183-207 (233)
87 COG0796 MurI Glutamate racemas 27.8 3.8E+02 0.0083 22.8 7.8 63 60-125 17-80 (269)
88 cd03235 ABC_Metallic_Cations A 27.8 99 0.0022 24.3 4.1 25 99-124 169-193 (213)
89 TIGR02211 LolD_lipo_ex lipopro 27.8 89 0.0019 24.7 3.8 24 101-124 180-203 (221)
90 PRK12314 gamma-glutamyl kinase 27.8 64 0.0014 27.1 3.1 27 96-123 31-57 (266)
91 TIGR02769 nickel_nikE nickel i 27.5 85 0.0018 25.9 3.8 28 99-126 187-214 (265)
92 PF01713 Smr: Smr domain; Int 27.5 1.2E+02 0.0027 20.2 4.0 44 90-133 4-53 (83)
93 cd03230 ABC_DR_subfamily_A Thi 27.4 1E+02 0.0022 23.5 4.0 25 99-124 132-156 (173)
94 cd03225 ABC_cobalt_CbiO_domain 27.3 97 0.0021 24.3 3.9 23 101-124 173-195 (211)
95 PRK11248 tauB taurine transpor 27.2 87 0.0019 25.8 3.8 26 99-124 165-190 (255)
96 PRK10584 putative ABC transpor 27.1 92 0.002 24.8 3.8 27 99-125 183-209 (228)
97 PRK11831 putative ABC transpor 27.1 88 0.0019 25.9 3.8 24 100-123 181-204 (269)
98 PRK10575 iron-hydroxamate tran 26.8 93 0.002 25.7 3.9 25 100-124 185-209 (265)
99 TIGR01184 ntrCD nitrate transp 26.8 94 0.002 25.0 3.8 24 101-124 153-176 (230)
100 cd03216 ABC_Carb_Monos_I This 26.7 1.1E+02 0.0023 23.3 4.0 25 99-124 119-143 (163)
101 cd03257 ABC_NikE_OppD_transpor 26.7 90 0.002 24.8 3.7 26 99-124 182-207 (228)
102 cd07397 MPP_DevT Myxococcus xa 26.5 73 0.0016 26.6 3.1 35 91-127 126-160 (238)
103 PRK13646 cbiO cobalt transport 26.4 94 0.002 26.1 3.9 26 100-125 183-208 (286)
104 cd03301 ABC_MalK_N The N-termi 26.3 1E+02 0.0022 24.2 3.9 22 103-124 171-192 (213)
105 cd03295 ABC_OpuCA_Osmoprotecti 26.2 93 0.002 25.2 3.7 27 98-124 171-197 (242)
106 PRK10771 thiQ thiamine transpo 26.1 98 0.0021 24.8 3.8 26 100-125 167-192 (232)
107 cd03297 ABC_ModC_molybdenum_tr 26.1 96 0.0021 24.5 3.7 25 101-125 170-194 (214)
108 TIGR03729 acc_ester putative p 26.0 1.2E+02 0.0026 24.6 4.3 37 91-127 141-178 (239)
109 TIGR02323 CP_lyasePhnK phospho 25.8 97 0.0021 25.2 3.8 27 99-125 185-211 (253)
110 cd03292 ABC_FtsE_transporter F 25.6 1.1E+02 0.0023 24.1 3.9 25 99-124 173-197 (214)
111 TIGR01277 thiQ thiamine ABC tr 25.5 1E+02 0.0023 24.3 3.8 23 102-124 168-190 (213)
112 cd03300 ABC_PotA_N PotA is an 25.3 1.1E+02 0.0023 24.6 3.9 25 101-125 169-193 (232)
113 PRK13539 cytochrome c biogenes 25.3 1.1E+02 0.0024 24.1 4.0 24 100-124 165-188 (207)
114 COG0634 Hpt Hypoxanthine-guani 25.2 1.2E+02 0.0026 24.3 3.9 33 93-125 13-48 (178)
115 cd03265 ABC_DrrA DrrA is the A 25.2 1.2E+02 0.0025 24.1 4.1 25 101-125 170-194 (220)
116 TIGR00960 3a0501s02 Type II (G 25.2 1.1E+02 0.0024 24.1 4.0 23 101-124 177-199 (216)
117 smart00463 SMR Small MutS-rela 25.0 2.1E+02 0.0045 18.9 4.8 31 90-120 7-38 (80)
118 PF01965 DJ-1_PfpI: DJ-1/PfpI 24.9 98 0.0021 23.0 3.4 38 89-127 44-85 (147)
119 PRK14250 phosphate ABC transpo 24.7 1.1E+02 0.0023 24.9 3.8 25 100-124 169-193 (241)
120 TIGR01552 phd_fam prevent-host 24.7 1.7E+02 0.0036 17.6 3.9 30 93-124 3-32 (52)
121 TIGR02982 heterocyst_DevA ABC 24.7 1.1E+02 0.0024 24.2 3.9 26 99-124 178-203 (220)
122 cd03238 ABC_UvrA The excision 24.5 1.3E+02 0.0029 23.5 4.2 25 100-125 127-151 (176)
123 cd03226 ABC_cobalt_CbiO_domain 24.5 1.2E+02 0.0026 23.7 4.0 25 99-124 163-187 (205)
124 cd00519 Lipase_3 Lipase (class 24.4 2.2E+02 0.0048 22.6 5.6 42 92-133 105-149 (229)
125 PRK13547 hmuV hemin importer A 24.3 1.1E+02 0.0023 25.7 3.8 26 99-124 191-216 (272)
126 PF09174 Maf1: Maf1 regulator; 24.2 1.2E+02 0.0025 24.1 3.8 73 63-158 75-147 (179)
127 PRK04155 chaperone protein Hch 24.2 1E+02 0.0022 26.3 3.7 26 99-125 167-192 (287)
128 PRK09984 phosphonate/organopho 24.2 1.1E+02 0.0023 25.1 3.8 26 100-125 190-215 (262)
129 COG1125 OpuBA ABC-type proline 24.1 88 0.0019 26.9 3.2 27 98-124 171-197 (309)
130 TIGR01187 potA spermidine/putr 24.1 1.1E+02 0.0024 26.3 3.9 27 99-125 137-163 (325)
131 PRK11432 fbpC ferric transport 24.0 1.1E+02 0.0023 26.8 3.9 29 98-126 172-200 (351)
132 cd03214 ABC_Iron-Siderophores_ 23.9 1.2E+02 0.0026 23.3 3.8 28 98-125 133-160 (180)
133 cd03298 ABC_ThiQ_thiamine_tran 23.8 1.2E+02 0.0025 23.9 3.8 25 101-125 167-191 (211)
134 PRK11614 livF leucine/isoleuci 23.8 1.2E+02 0.0026 24.3 4.0 25 98-123 173-197 (237)
135 TIGR01069 mutS2 MutS2 family p 23.8 2.6E+02 0.0056 27.4 6.8 45 90-135 699-746 (771)
136 TIGR03608 L_ocin_972_ABC putat 23.7 1.3E+02 0.0029 23.4 4.1 26 99-125 171-196 (206)
137 TIGR03864 PQQ_ABC_ATP ABC tran 23.6 1.2E+02 0.0025 24.5 3.8 24 102-125 172-195 (236)
138 PRK13637 cbiO cobalt transport 23.6 1.1E+02 0.0025 25.6 3.9 27 99-125 181-207 (287)
139 TIGR02673 FtsE cell division A 23.5 1.2E+02 0.0027 23.7 3.9 23 101-124 176-198 (214)
140 PRK13650 cbiO cobalt transport 23.3 1.2E+02 0.0025 25.4 3.9 26 100-125 178-203 (279)
141 PRK15093 antimicrobial peptide 23.3 1.1E+02 0.0024 26.3 3.8 29 98-126 194-222 (330)
142 TIGR02770 nickel_nikD nickel i 23.2 1.2E+02 0.0026 24.3 3.8 23 102-124 165-187 (230)
143 cd03219 ABC_Mj1267_LivG_branch 23.1 1.3E+02 0.0028 24.1 4.0 23 102-125 183-205 (236)
144 TIGR00968 3a0106s01 sulfate AB 23.0 1.2E+02 0.0026 24.4 3.8 24 101-124 169-192 (237)
145 PRK10418 nikD nickel transport 23.0 1.2E+02 0.0026 24.8 3.8 25 101-125 179-203 (254)
146 PRK10253 iron-enterobactin tra 22.9 1.3E+02 0.0027 24.9 4.0 26 99-124 180-205 (265)
147 PRK10247 putative ABC transpor 22.8 1.2E+02 0.0027 24.2 3.8 27 99-125 174-200 (225)
148 TIGR03265 PhnT2 putative 2-ami 22.7 1.2E+02 0.0026 26.5 4.0 29 98-126 170-198 (353)
149 PTZ00489 glutamate 5-kinase; P 22.7 1.3E+02 0.0028 25.4 4.0 29 96-126 29-57 (264)
150 TIGR03410 urea_trans_UrtE urea 22.6 1.3E+02 0.0029 23.9 4.0 24 101-124 170-193 (230)
151 PRK09452 potA putrescine/sperm 22.4 1.2E+02 0.0027 26.7 4.0 29 97-125 179-207 (375)
152 cd03262 ABC_HisP_GlnQ_permease 22.4 1.4E+02 0.0029 23.5 3.9 26 98-124 171-196 (213)
153 PF00782 DSPc: Dual specificit 22.4 72 0.0016 23.0 2.2 38 91-129 52-89 (133)
154 PRK11247 ssuB aliphatic sulfon 22.2 1.2E+02 0.0027 25.0 3.8 24 102-125 173-196 (257)
155 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 22.2 1.4E+02 0.003 24.0 4.0 24 100-124 180-203 (224)
156 PF07897 DUF1675: Protein of u 22.2 32 0.0007 29.5 0.2 29 99-127 236-264 (284)
157 TIGR02324 CP_lyasePhnL phospho 22.2 1.4E+02 0.003 23.7 4.0 26 99-125 186-211 (224)
158 PRK11701 phnK phosphonate C-P 21.9 1.3E+02 0.0028 24.6 3.8 28 99-126 188-215 (258)
159 cd03213 ABCG_EPDR ABCG transpo 21.9 1.4E+02 0.0031 23.2 4.0 24 99-123 148-171 (194)
160 cd03232 ABC_PDR_domain2 The pl 21.8 1.5E+02 0.0032 23.1 4.0 23 100-123 146-168 (192)
161 cd03268 ABC_BcrA_bacitracin_re 21.7 1.4E+02 0.003 23.4 3.9 24 101-125 165-188 (208)
162 cd00267 ABC_ATPase ABC (ATP-bi 21.7 1.6E+02 0.0034 22.0 4.0 27 98-125 116-142 (157)
163 TIGR01186 proV glycine betaine 21.7 1.3E+02 0.0028 26.6 4.0 27 99-125 166-192 (363)
164 PRK14258 phosphate ABC transpo 21.7 1.4E+02 0.0029 24.6 3.9 24 102-125 190-213 (261)
165 TIGR01618 phage_P_loop phage n 21.7 1.4E+02 0.0031 24.4 4.0 30 94-124 115-144 (220)
166 PRK10419 nikE nickel transport 21.6 1.3E+02 0.0027 25.0 3.7 27 99-125 188-214 (268)
167 cd03224 ABC_TM1139_LivF_branch 21.6 1.5E+02 0.0033 23.3 4.1 23 101-124 171-193 (222)
168 PRK15112 antimicrobial peptide 21.6 1.2E+02 0.0027 24.9 3.7 26 100-125 187-212 (267)
169 PRK13648 cbiO cobalt transport 21.6 1.4E+02 0.0029 24.7 3.9 23 102-124 182-204 (269)
170 cd03294 ABC_Pro_Gly_Bertaine T 21.5 1.3E+02 0.0029 24.8 3.8 24 101-124 199-222 (269)
171 cd03148 GATase1_EcHsp31_like T 21.4 1.4E+02 0.003 24.6 3.9 25 100-125 117-141 (232)
172 PRK15088 PTS system mannose-sp 21.3 94 0.002 27.0 3.0 19 115-133 4-22 (322)
173 COG0444 DppD ABC-type dipeptid 21.2 1.3E+02 0.0027 26.3 3.7 34 97-130 188-221 (316)
174 TIGR03005 ectoine_ehuA ectoine 21.2 1.4E+02 0.003 24.3 3.8 26 100-125 184-209 (252)
175 PRK09580 sufC cysteine desulfu 21.2 1.4E+02 0.0031 24.0 4.0 25 100-125 183-207 (248)
176 PRK13540 cytochrome c biogenes 21.2 1.6E+02 0.0035 23.0 4.1 24 100-124 165-188 (200)
177 PRK11124 artP arginine transpo 21.0 1.5E+02 0.0033 23.8 4.1 27 98-125 177-203 (242)
178 PRK13548 hmuV hemin importer A 21.0 1.4E+02 0.003 24.5 3.8 25 101-125 179-203 (258)
179 TIGR01092 P5CS delta l-pyrroli 20.8 1.1E+02 0.0024 29.6 3.6 28 97-125 30-57 (715)
180 PRK11300 livG leucine/isoleuci 20.8 1.5E+02 0.0032 24.0 4.0 26 100-125 191-216 (255)
181 PRK10070 glycine betaine trans 20.8 1.3E+02 0.0028 27.0 3.8 24 101-124 203-226 (400)
182 TIGR03771 anch_rpt_ABC anchore 20.7 1.5E+02 0.0033 23.7 3.9 24 100-124 151-174 (223)
183 cd03218 ABC_YhbG The ABC trans 20.7 1.5E+02 0.0033 23.6 4.0 23 100-123 171-193 (232)
184 cd03246 ABCC_Protease_Secretio 20.6 1.6E+02 0.0036 22.4 4.0 21 103-124 137-157 (173)
185 cd03269 ABC_putative_ATPase Th 20.6 1.5E+02 0.0033 23.2 3.9 25 100-125 166-190 (210)
186 PF13175 AAA_15: AAA ATPase do 20.6 1.5E+02 0.0032 25.6 4.1 30 96-125 385-414 (415)
187 PF02604 PhdYeFM_antitox: Anti 20.5 1.5E+02 0.0032 19.2 3.3 30 93-123 5-34 (75)
188 PRK13645 cbiO cobalt transport 20.5 1.4E+02 0.003 25.0 3.8 24 101-124 189-212 (289)
189 PRK13538 cytochrome c biogenes 20.5 1.6E+02 0.0035 23.1 4.0 22 101-123 168-189 (204)
190 PRK13543 cytochrome c biogenes 20.4 1.6E+02 0.0035 23.3 4.0 24 100-124 175-198 (214)
191 TIGR01189 ccmA heme ABC export 20.4 1.6E+02 0.0036 22.8 4.0 25 98-123 163-187 (198)
192 cd03215 ABC_Carb_Monos_II This 20.3 1.6E+02 0.0036 22.6 4.0 23 100-123 142-164 (182)
193 PRK11000 maltose/maltodextrin 20.3 1.4E+02 0.003 26.3 3.9 26 99-124 170-195 (369)
194 PRK10851 sulfate/thiosulfate t 20.2 1.4E+02 0.0031 26.1 3.9 28 98-125 172-199 (353)
195 TIGR02689 ars_reduc_gluta arse 20.2 92 0.002 22.8 2.3 18 114-131 1-18 (126)
196 PRK11144 modC molybdate transp 20.2 1.4E+02 0.0029 26.1 3.8 26 99-124 165-190 (352)
197 PRK13634 cbiO cobalt transport 20.2 1.5E+02 0.0031 25.0 3.9 26 100-125 183-208 (290)
198 PRK15079 oligopeptide ABC tran 20.2 1.4E+02 0.003 25.9 3.7 27 101-127 200-226 (331)
199 PRK13633 cobalt transporter AT 20.2 1.4E+02 0.0031 24.8 3.8 25 101-125 183-207 (280)
200 PRK00409 recombination and DNA 20.0 3.5E+02 0.0075 26.6 6.8 45 90-135 710-757 (782)
No 1
>KOG4754 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=99.91 E-value=2.6e-24 Score=172.60 Aligned_cols=166 Identities=48% Similarity=0.743 Sum_probs=136.1
Q ss_pred cchhHHHHHHHhhCCCCCCCCCCCCCCCcccccccCCCCCeeeccchhhhcCCCCCCCCCCHHHHHhhCCCCCccccccc
Q 029359 2 GGCRTLQTAVGVFGGDGESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDFKLIESE 81 (194)
Q Consensus 2 ~L~RA~qTA~ii~~~~~~~~~~~~~~~p~~~~~~~~~~~pi~~~~~LrE~~g~~~~~eG~~~~el~~~~P~~~~~~~~~~ 81 (194)
||+||+|||.+.|+.. .+.++.+..|+|++ +|++ ..|||.+|.++||.|+.++++++.||.+||+....+
T Consensus 79 PMrRtLqT~v~~f~~~--~~e~g~~~~p~~vs------p~~i--~~~rE~lG~hpCD~r~~v~~~~~lfp~~DFs~~~~d 148 (248)
T KOG4754|consen 79 PMRRTLQTMVIAFGGY--LAEDGEDPAPVKVS------PPFI--AVCRETLGDHPCDRRSSVTDLMKLFPAYDFSLCETD 148 (248)
T ss_pred hHHHHHHHHHHHhcce--eccCCCcCCceeec------chHH--HHHHHHhCCCcccccchhHHHHhhcccccceeeccC
Confidence 7999999999999986 34555444455441 2222 226998899999999999999999999999988777
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCCEEEEEechHHHHHHHHHHhcCCCCCCCCCCCCCccCceEEEEEEecC
Q 029359 82 DDKLWKADAREPFEEVTARGMEFMKWLWTRQEKEIAVVSHGIFLQQTLNALLNDCQTSPNQELCPRFTNCEIRSVVIVDQ 161 (194)
Q Consensus 82 ~~~~~~~~~gEs~~~v~~R~~~fL~~l~~~~~~~IlVVSHGg~Ir~ll~~l~~~~~~~~~~~~~~~~~Ncsit~i~~~~~ 161 (194)
.+..|.+...|+.+....|.+.|++|+.+++++.|+||||+++|+.++..+...++.++... ...+.||+.+.+.+-|.
T Consensus 149 v~~~~~pdy~ed~e~~a~r~re~~~~l~~r~ek~iavvths~fl~~llk~i~k~cd~dv~~~-~~~~~Nce~r~~~i~Dr 227 (248)
T KOG4754|consen 149 VDPLKKPDYREDDEESAARSREFLEWLAKRPEKEIAVVTHSGFLRSLLKKIQKDCDPDVKPE-ILSFSNCEHRSFVIVDR 227 (248)
T ss_pred cchhccCcchhhHHHHHHhHHHHHHHHHhCccceEEEEEehHHHHHHHHHhccccCcccchh-hhccCCCcCCceeEeee
Confidence 77888888899999999999999999999999999999999999999999988777766321 23468999998877665
Q ss_pred cccCC----CCCCCCCCCCCC
Q 029359 162 SIRGS----CYPGTISGELRL 178 (194)
Q Consensus 162 ~~~~~----~~~~~~~~~~~~ 178 (194)
+-.+. +|||.++.+.|+
T Consensus 228 ~~~~~d~~~n~p~~~~~~~~~ 248 (248)
T KOG4754|consen 228 GMLGTDSVTNVPGKIADGGDL 248 (248)
T ss_pred eeeccccceecCCcccCcCCC
Confidence 55554 899999998874
No 2
>PRK13463 phosphatase PhoE; Provisional
Probab=99.91 E-value=2.8e-24 Score=174.09 Aligned_cols=133 Identities=23% Similarity=0.223 Sum_probs=109.1
Q ss_pred cchhHHHHHHHhhCCCCCCCCCCCCCCCcccccccCCCCCeeeccchhhhcCCCCCCCCCCHHHHHhhCCCCCccccccc
Q 029359 2 GGCRTLQTAVGVFGGDGESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDFKLIESE 81 (194)
Q Consensus 2 ~L~RA~qTA~ii~~~~~~~~~~~~~~~p~~~~~~~~~~~pi~~~~~LrE~~g~~~~~eG~~~~el~~~~P~~~~~~~~~~ 81 (194)
||.||+|||+++....+ .|++++++|+|+. +|.|+|++..+++++||+. +..++.+
T Consensus 56 pl~Ra~qTA~~i~~~~~---------------------~~~~~~~~l~E~~--~G~~eG~~~~e~~~~~p~~-~~~~~~~ 111 (203)
T PRK13463 56 PSERTLHTAELIKGERD---------------------IPIIADEHFYEIN--MGIWEGQTIDDIERQYPDD-IQLFWNE 111 (203)
T ss_pred CcHHHHHHHHHHHhcCC---------------------CCceECcCceeCC--CCccCCCcHHHHhhhCHHH-HHHHHhC
Confidence 79999999999976542 5788999999983 5679999999999999974 5555544
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHc-CCCCEEEEEechHHHHHHHHHHhcCCCCCCCCCCCCCccCceEEEEEEec
Q 029359 82 DDKLWKADAREPFEEVTARGMEFMKWLWT-RQEKEIAVVSHGIFLQQTLNALLNDCQTSPNQELCPRFTNCEIRSVVIVD 160 (194)
Q Consensus 82 ~~~~~~~~~gEs~~~v~~R~~~fL~~l~~-~~~~~IlVVSHGg~Ir~ll~~l~~~~~~~~~~~~~~~~~Ncsit~i~~~~ 160 (194)
+ ..+.+++|||+.++.+|+..+++++.. +++++|+|||||++|+++++.+++.+...+|. ...+.||+++++++.+
T Consensus 112 ~-~~~~~~~gEs~~~~~~R~~~~l~~i~~~~~~~~vlvVsHg~~ir~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~~ 188 (203)
T PRK13463 112 P-HLFQSTSGENFEAVHKRVIEGMQLLLEKHKGESILIVSHAAAAKLLVGHFAGIEIENVWD--DPFMHSASLSIIEFED 188 (203)
T ss_pred h-hccCCCCCeEHHHHHHHHHHHHHHHHHhCCCCEEEEEeChHHHHHHHHHHhCCCHHHHhh--ccCccCceEEEEEEeC
Confidence 3 356678999999999999999999875 46789999999999999999999876655431 1247899999999965
Q ss_pred C
Q 029359 161 Q 161 (194)
Q Consensus 161 ~ 161 (194)
+
T Consensus 189 ~ 189 (203)
T PRK13463 189 G 189 (203)
T ss_pred C
Confidence 4
No 3
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=99.91 E-value=2.8e-24 Score=177.22 Aligned_cols=138 Identities=11% Similarity=-0.030 Sum_probs=107.5
Q ss_pred cchhHHHHHHHhhCCCCCCCCCCCCCCCcccccccCCCCCeeeccchhhhcCCCCCCCCCCHHHHHhhCCCCCccccccc
Q 029359 2 GGCRTLQTAVGVFGGDGESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDFKLIESE 81 (194)
Q Consensus 2 ~L~RA~qTA~ii~~~~~~~~~~~~~~~p~~~~~~~~~~~pi~~~~~LrE~~g~~~~~eG~~~~el~~~~P~~~~~~~~~~ 81 (194)
||+||+|||++|++..+ . ..+|+.++++|||+. +|.|+|++.+++.++||+..+..|..+
T Consensus 57 pL~Ra~qTA~~i~~~~~--------~----------~~~~~~~~~~LrE~~--fG~wEG~~~~ei~~~~p~~~~~~w~~~ 116 (228)
T PRK14116 57 VLTRAIKTLHYALEESD--------Q----------LWIPETKTWRLNERH--YGALQGLNKKETAEKYGDEQVHIWRRS 116 (228)
T ss_pred ChHHHHHHHHHHHHhcC--------c----------CCCCcccCccccccc--chhhcCCCHHHHHHHhhhhHHHHHhhc
Confidence 79999999999976541 0 015677899999984 567999999999999986423222211
Q ss_pred C-----------------------CCCCCCCCCCCHHHHHHHHHHHHHHHHc---CCCCEEEEEechHHHHHHHHHHhcC
Q 029359 82 D-----------------------DKLWKADAREPFEEVTARGMEFMKWLWT---RQEKEIAVVSHGIFLQQTLNALLND 135 (194)
Q Consensus 82 ~-----------------------~~~~~~~~gEs~~~v~~R~~~fL~~l~~---~~~~~IlVVSHGg~Ir~ll~~l~~~ 135 (194)
. ...+.+|+|||+.++.+|+..+++++.. +++++|||||||++|+++++.+++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgGEs~~~~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~vir~ll~~~~~~ 196 (228)
T PRK14116 117 YDVLPPLLDADDEGSAAKDRRYANLDPRIIPGGENLKVTLERVIPFWEDHIAPDLLDGKNVIIAAHGNSLRALTKYIENI 196 (228)
T ss_pred ccccCcccccccccccccchhhhccCccCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcChHHHHHHHHHHhCC
Confidence 0 0123468999999999999999998763 3578999999999999999999987
Q ss_pred CCCCCCCCCCCCccCceEEEEEEecCc
Q 029359 136 CQTSPNQELCPRFTNCEIRSVVIVDQS 162 (194)
Q Consensus 136 ~~~~~~~~~~~~~~Ncsit~i~~~~~~ 162 (194)
+...+ +...++||+++.+++++.+
T Consensus 197 ~~~~~---~~~~~~~~~~~~~~~~~~~ 220 (228)
T PRK14116 197 SDEDI---MNLEMATGEPVVYDFDEKL 220 (228)
T ss_pred CHHHH---HhccCCCCCeEEEEECCCC
Confidence 76654 3567999999999998765
No 4
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=99.90 E-value=5.6e-24 Score=175.33 Aligned_cols=137 Identities=12% Similarity=0.028 Sum_probs=106.0
Q ss_pred cchhHHHHHHHhhCCCCCCCCCCCCCCCcccccccCCCCCeeeccchhhhcCCCCCCCCCCHHHHHhhCCCCCccccccc
Q 029359 2 GGCRTLQTAVGVFGGDGESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDFKLIESE 81 (194)
Q Consensus 2 ~L~RA~qTA~ii~~~~~~~~~~~~~~~p~~~~~~~~~~~pi~~~~~LrE~~g~~~~~eG~~~~el~~~~P~~~~~~~~~~ 81 (194)
||+||+|||+++++... ...+|++++++|||+. +|.|+|++.++++++||+..+..|...
T Consensus 57 pL~Ra~~TA~~i~~~~~------------------~~~~~~~~~~~LrE~~--fG~weG~~~~ei~~~~~~~~~~~w~~~ 116 (228)
T PRK14119 57 LLTRALDTTHYILTESK------------------QQWIPVYKSWRLNERH--YGGLQGLNKDDARKEFGEEQVHIWRRS 116 (228)
T ss_pred ccHHHHHHHHHHHHhcc------------------cCCCCeeECCCccccc--cccccCCcHHHHHHHccHHHHHHHHcc
Confidence 79999999999976431 0125788899999983 566999999999999986323333221
Q ss_pred CCC-----------------------CCCCCCCCCHHHHHHHHHHHHHHHHc-C--CCCEEEEEechHHHHHHHHHHhcC
Q 029359 82 DDK-----------------------LWKADAREPFEEVTARGMEFMKWLWT-R--QEKEIAVVSHGIFLQQTLNALLND 135 (194)
Q Consensus 82 ~~~-----------------------~~~~~~gEs~~~v~~R~~~fL~~l~~-~--~~~~IlVVSHGg~Ir~ll~~l~~~ 135 (194)
.+. ...+|+|||+.++.+|+..+++++.. + ++++|||||||++|+++++.+.+.
T Consensus 117 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHg~vir~l~~~~~~~ 196 (228)
T PRK14119 117 YDVKPPAETEEQREAYLADRRYNHLDKRMMPYSESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIRALIKYLEDV 196 (228)
T ss_pred cccCCCcccccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHhhccCCCeEEEEeChHHHHHHHHHHhCC
Confidence 100 12247999999999999999999863 3 568999999999999999999887
Q ss_pred CCCCCCCCCCCCccCceEEEEEEecC
Q 029359 136 CQTSPNQELCPRFTNCEIRSVVIVDQ 161 (194)
Q Consensus 136 ~~~~~~~~~~~~~~Ncsit~i~~~~~ 161 (194)
+...+ +...++||+++.++++++
T Consensus 197 ~~~~~---~~~~~~~~~~~~~~~~~~ 219 (228)
T PRK14119 197 SDEDI---INYEIKTGAPLVYELTDD 219 (228)
T ss_pred CHHHH---hhcCCCCCceEEEEECCC
Confidence 65544 255799999999999766
No 5
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=99.90 E-value=5.5e-24 Score=171.61 Aligned_cols=132 Identities=15% Similarity=0.038 Sum_probs=107.6
Q ss_pred cchhHHHHHHHhhCCCCCCCCCCCCCCCcccccccCCCCCeeeccchhhhcCCCCCCCCCCHHHHHhhCCCCCccccccc
Q 029359 2 GGCRTLQTAVGVFGGDGESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDFKLIESE 81 (194)
Q Consensus 2 ~L~RA~qTA~ii~~~~~~~~~~~~~~~p~~~~~~~~~~~pi~~~~~LrE~~g~~~~~eG~~~~el~~~~P~~~~~~~~~~ 81 (194)
||+||+|||++++...+ +++.++++|+|+. +|.|+|++..++.+++|+. |..|..+
T Consensus 54 pl~Ra~qTA~~i~~~~~---------------------~~~~~~~~L~E~~--~G~~eg~~~~~~~~~~~~~-~~~~~~~ 109 (199)
T PRK15004 54 ELERAQHTARLVLSDRQ---------------------LPVHIIPELNEMF--FGDWEMRHHRDLMQEDAEN-YAAWCND 109 (199)
T ss_pred chHHHHHHHHHHHhcCC---------------------CCceeChhheeCC--CcccCCCCHHHHHHHCHHH-HHHHHhC
Confidence 79999999999987652 5778899999983 5669999999999998863 5545433
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHc-CCCCEEEEEechHHHHHHHHHHhcCCCCCCCCCCCCCccCceEEEEEEec
Q 029359 82 DDKLWKADAREPFEEVTARGMEFMKWLWT-RQEKEIAVVSHGIFLQQTLNALLNDCQTSPNQELCPRFTNCEIRSVVIVD 160 (194)
Q Consensus 82 ~~~~~~~~~gEs~~~v~~R~~~fL~~l~~-~~~~~IlVVSHGg~Ir~ll~~l~~~~~~~~~~~~~~~~~Ncsit~i~~~~ 160 (194)
+. ...+++|||+.++.+|+..+++++.+ +++++|+|||||++|+++++.+++.+...+ +...+.||+++.+++++
T Consensus 110 ~~-~~~~~~gEs~~~~~~Rv~~~l~~l~~~~~~~~iliVsHg~~i~~l~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~ 185 (199)
T PRK15004 110 WQ-HAIPTNGEGFQAFSQRVERFIARLSAFQHYQNLLIVSHQGVLSLLIARLLGMPAEAM---WHFRVEQGCWSAIDINQ 185 (199)
T ss_pred hh-hcCCCCCcCHHHHHHHHHHHHHHHHHhCCCCeEEEEcChHHHHHHHHHHhCCCHHHH---hccccCCceEEEEEecC
Confidence 22 23456899999999999999999985 457899999999999999999988765544 35678999999999965
Q ss_pred C
Q 029359 161 Q 161 (194)
Q Consensus 161 ~ 161 (194)
+
T Consensus 186 ~ 186 (199)
T PRK15004 186 G 186 (199)
T ss_pred C
Confidence 4
No 6
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=99.90 E-value=6.7e-24 Score=175.23 Aligned_cols=137 Identities=11% Similarity=-0.019 Sum_probs=104.1
Q ss_pred cchhHHHHHHHhhCCCCCCCCCCCCCCCcccccccCCCCCeeeccchhhhcCCCCCCCCCCHHHHHhhCCCCCccccccc
Q 029359 2 GGCRTLQTAVGVFGGDGESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDFKLIESE 81 (194)
Q Consensus 2 ~L~RA~qTA~ii~~~~~~~~~~~~~~~p~~~~~~~~~~~pi~~~~~LrE~~g~~~~~eG~~~~el~~~~P~~~~~~~~~~ 81 (194)
||+||+|||++++.... ...++++++++|||+. +|.|+|++.+++.++||+..+..|..+
T Consensus 57 pl~Ra~~TA~~i~~~~~------------------~~~~~~~~~~~LrE~~--fG~wEG~~~~ei~~~~p~~~~~~w~~~ 116 (230)
T PRK14117 57 VLKRAIKTTNLALEASD------------------QLWVPVEKSWRLNERH--YGGLTGKNKAEAAEQFGDEQVHIWRRS 116 (230)
T ss_pred CcHHHHHHHHHHHHhcc------------------cCCCCceeCCcccccc--chhhcCCCHHHHHHHccHHHHHHHhcc
Confidence 79999999999874321 0125778899999984 567999999999999996322222211
Q ss_pred C-----------------------CCCCCCCCCCCHHHHHHHHHHHHHHHH-c-C-CCCEEEEEechHHHHHHHHHHhcC
Q 029359 82 D-----------------------DKLWKADAREPFEEVTARGMEFMKWLW-T-R-QEKEIAVVSHGIFLQQTLNALLND 135 (194)
Q Consensus 82 ~-----------------------~~~~~~~~gEs~~~v~~R~~~fL~~l~-~-~-~~~~IlVVSHGg~Ir~ll~~l~~~ 135 (194)
. .....+|+|||+.++.+|+..|++++. . . .+++|+|||||++|+++++.+++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHg~~ir~ll~~~lg~ 196 (230)
T PRK14117 117 YDVLPPAMAKDDEYSAHTDRRYASLDDSVIPDAENLKVTLERALPFWEDKIAPALKDGKNVFVGAHGNSIRALVKHIKGL 196 (230)
T ss_pred cccCCCcccccccccccccccccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHHHHHHHHHHhCc
Confidence 0 011245799999999999999999975 2 2 458999999999999999999887
Q ss_pred CCCCCCCCCCCCccCceEEEEEEecC
Q 029359 136 CQTSPNQELCPRFTNCEIRSVVIVDQ 161 (194)
Q Consensus 136 ~~~~~~~~~~~~~~Ncsit~i~~~~~ 161 (194)
+...+ +...++||+++++++++.
T Consensus 197 ~~~~~---~~~~~~n~s~~~i~~~~~ 219 (230)
T PRK14117 197 SDDEI---MDVEIPNFPPLVFEFDEK 219 (230)
T ss_pred CHHHH---hhcCCCCceEEEEEECCC
Confidence 65544 245799999999999544
No 7
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=99.89 E-value=2.2e-23 Score=171.78 Aligned_cols=137 Identities=12% Similarity=-0.008 Sum_probs=104.7
Q ss_pred cchhHHHHHHHhhCCCCCCCCCCCCCCCcccccccCCCCCeeeccchhhhcCCCCCCCCCCHHHHHhhCCCCCccccccc
Q 029359 2 GGCRTLQTAVGVFGGDGESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDFKLIESE 81 (194)
Q Consensus 2 ~L~RA~qTA~ii~~~~~~~~~~~~~~~p~~~~~~~~~~~pi~~~~~LrE~~g~~~~~eG~~~~el~~~~P~~~~~~~~~~ 81 (194)
||+||+|||++|....+ . ..+|++++++|+|+. +|.|+|++.+++.++||+..+..|...
T Consensus 56 pl~Ra~~TA~~i~~~~~--------~----------~~~~~~~~~~LrE~~--fG~wEG~~~~ei~~~~p~~~~~~w~~~ 115 (227)
T PRK14118 56 VLTRAIKTCNIVLEESN--------Q----------LWIPQVKNWRLNERH--YGALQGLDKKATAEQYGDEQVHIWRRS 115 (227)
T ss_pred ChHHHHHHHHHHHHhcC--------C----------CCCCeecCCcccccc--CccccCCcHHHHHHHhhHHHHHHHHhc
Confidence 79999999999976431 0 014678899999983 567999999999999986322222211
Q ss_pred CC-----------------------CCCCCCCCCCHHHHHHHHHHHHHHHHc---CCCCEEEEEechHHHHHHHHHHhcC
Q 029359 82 DD-----------------------KLWKADAREPFEEVTARGMEFMKWLWT---RQEKEIAVVSHGIFLQQTLNALLND 135 (194)
Q Consensus 82 ~~-----------------------~~~~~~~gEs~~~v~~R~~~fL~~l~~---~~~~~IlVVSHGg~Ir~ll~~l~~~ 135 (194)
++ ....+|+|||+.++.+|+..+++++.. +++++|||||||++|+++++.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHggvir~ll~~~l~~ 195 (227)
T PRK14118 116 YDTLPPDLDPQDPNSAHNDRRYAHLPADVVPDAENLKVTLERVLPFWEDQIAPALLSGKRVLVAAHGNSLRALAKHIEGI 195 (227)
T ss_pred cccCCCccccccccccccchhhccCcCCCCCCCCCHHHHHHHHHHHHHHHHhhhhcCCCeEEEEeCHHHHHHHHHHHhCC
Confidence 00 012357999999999999999998764 3568999999999999999999887
Q ss_pred CCCCCCCCCCCCccCceEEEEEEecC
Q 029359 136 CQTSPNQELCPRFTNCEIRSVVIVDQ 161 (194)
Q Consensus 136 ~~~~~~~~~~~~~~Ncsit~i~~~~~ 161 (194)
+...+ +...++||+++.++++++
T Consensus 196 ~~~~~---~~~~i~~~s~~~~~~~~~ 218 (227)
T PRK14118 196 SDADI---MDLEIPTGQPLVYKLDDN 218 (227)
T ss_pred CHHHH---hcccCCCCceEEEEECCC
Confidence 65544 246789999999999655
No 8
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=99.89 E-value=3.1e-23 Score=163.49 Aligned_cols=126 Identities=20% Similarity=0.141 Sum_probs=103.5
Q ss_pred cchhHHHHHHHhhCCCCCCCCCCCCCCCcccccccCCCCCeeeccchhhhcCCCCCCCCCCHHHHHhhCCCCCccccccc
Q 029359 2 GGCRTLQTAVGVFGGDGESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDFKLIESE 81 (194)
Q Consensus 2 ~L~RA~qTA~ii~~~~~~~~~~~~~~~p~~~~~~~~~~~pi~~~~~LrE~~g~~~~~eG~~~~el~~~~P~~~~~~~~~~ 81 (194)
||+||+|||+++....+ .++.++++|+|+. +|.|+|++.+++.+.||. +..|..+
T Consensus 51 pl~Ra~qTA~~i~~~~~---------------------~~~~~~~~L~E~~--~G~~~g~~~~~~~~~~~~--~~~~~~~ 105 (177)
T TIGR03162 51 PLSRCRELAEILAERRG---------------------LPIIKDPRLREMD--FGDWEGRSWDEIPEAYPE--LDAWAAD 105 (177)
T ss_pred chHHHHHHHHHHHhhcC---------------------CCceECCcccccc--CCccCCCCHHHHHHhCHH--HHHHHhC
Confidence 79999999999987652 5678899999973 567999999999999983 4445443
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEechHHHHHHHHHHhcCCCCCCCCCCCCCccCceEEEE
Q 029359 82 DDKLWKADAREPFEEVTARGMEFMKWLWTR-QEKEIAVVSHGIFLQQTLNALLNDCQTSPNQELCPRFTNCEIRSV 156 (194)
Q Consensus 82 ~~~~~~~~~gEs~~~v~~R~~~fL~~l~~~-~~~~IlVVSHGg~Ir~ll~~l~~~~~~~~~~~~~~~~~Ncsit~i 156 (194)
+ ..+.+++|||+.++.+|+..+++++.+. ++++|+|||||++|+++++.+.+.+...+ +...++||+++.+
T Consensus 106 ~-~~~~~~~gEs~~~~~~R~~~~~~~l~~~~~~~~vlvVsHg~~i~~l~~~~~~~~~~~~---~~~~~~n~~i~~l 177 (177)
T TIGR03162 106 W-QHARPPGGESFADFYQRVSEFLEELLKAHEGDNVLIVTHGGVIRALLAHLLGLPLEQW---WSFDVEYGSITLI 177 (177)
T ss_pred c-ccCCCcCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHhCCCHHHH---hccccCCeeEEeC
Confidence 3 3456679999999999999999999864 67899999999999999999988765544 3567999999874
No 9
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=99.89 E-value=5.2e-23 Score=171.86 Aligned_cols=137 Identities=14% Similarity=0.053 Sum_probs=104.8
Q ss_pred cchhHHHHHHHhhCCCCCCCCCCCCCCCcccccccCCCCCeeeccchhhhcCCCCCCCCCCHHHHHhhCCCCCccccccc
Q 029359 2 GGCRTLQTAVGVFGGDGESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDFKLIESE 81 (194)
Q Consensus 2 ~L~RA~qTA~ii~~~~~~~~~~~~~~~p~~~~~~~~~~~pi~~~~~LrE~~g~~~~~eG~~~~el~~~~P~~~~~~~~~~ 81 (194)
+|+||+|||+++++... ...++++++++|+|+. +|.|+|++..++.++||+..+..|..+
T Consensus 60 pl~Ra~qTA~~i~~~~~------------------~~~~~i~~~~~L~E~~--fG~~eG~~~~ei~~~~~~~~~~~w~~~ 119 (249)
T PRK14120 60 LLRRAIRTANLALDAAD------------------RLWIPVRRSWRLNERH--YGALQGKDKAETKAEYGEEQFMLWRRS 119 (249)
T ss_pred ChHHHHHHHHHHHHhcc------------------cCCCCeEECCCccccc--ccccCCCCHHHHHHHccHHHHHHHHhc
Confidence 79999999999975431 0125788899999983 456999999999999986323333321
Q ss_pred CC----------CC-------C----CCCCCCCHHHHHHHHHHHHHHHH-c--CCCCEEEEEechHHHHHHHHHHhcCCC
Q 029359 82 DD----------KL-------W----KADAREPFEEVTARGMEFMKWLW-T--RQEKEIAVVSHGIFLQQTLNALLNDCQ 137 (194)
Q Consensus 82 ~~----------~~-------~----~~~~gEs~~~v~~R~~~fL~~l~-~--~~~~~IlVVSHGg~Ir~ll~~l~~~~~ 137 (194)
.. .+ + .+|+|||+.++.+|+..+++++. + +++++|||||||++|+++++.+++.+.
T Consensus 120 ~~~~~p~~~~~~~~~~~~d~~~~~~~~~p~GES~~~~~~Rv~~~l~~~~~~~~~~~~~iliVsHggvir~l~~~~~~~~~ 199 (249)
T PRK14120 120 YDTPPPPIEDGSEYSQDNDPRYADLGVGPRTECLKDVVARFLPYWEDDIVPDLKAGKTVLIAAHGNSLRALVKHLDGISD 199 (249)
T ss_pred cccCCCccccccccccccCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCEEEEEeCHHHHHHHHHHHhCCCH
Confidence 10 01 1 13799999999999999999853 2 467899999999999999999988766
Q ss_pred CCCCCCCCCCccCceEEEEEEecC
Q 029359 138 TSPNQELCPRFTNCEIRSVVIVDQ 161 (194)
Q Consensus 138 ~~~~~~~~~~~~Ncsit~i~~~~~ 161 (194)
..+ +...++||+++.|++.++
T Consensus 200 ~~~---~~~~i~~~~~~~~~~~~~ 220 (249)
T PRK14120 200 EDI---AGLNIPTGIPLVYELDED 220 (249)
T ss_pred HHh---heeccCCCceEEEEECCC
Confidence 654 356899999999999664
No 10
>PRK03482 phosphoglycerate mutase; Provisional
Probab=99.88 E-value=1.6e-22 Score=164.78 Aligned_cols=132 Identities=20% Similarity=0.094 Sum_probs=103.6
Q ss_pred cchhHHHHHHHhhCCCCCCCCCCCCCCCcccccccCCCCCeeeccchhhhcCCCCCCCCCCHHHHHhhCCCCCccccccc
Q 029359 2 GGCRTLQTAVGVFGGDGESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDFKLIESE 81 (194)
Q Consensus 2 ~L~RA~qTA~ii~~~~~~~~~~~~~~~p~~~~~~~~~~~pi~~~~~LrE~~g~~~~~eG~~~~el~~~~P~~~~~~~~~~ 81 (194)
||+||+|||+++....+ +|++++++|+|+. +|.|+|++.+++...++.+ ...+...
T Consensus 55 pl~Ra~qTA~~i~~~~~---------------------~~~~~~~~L~E~~--~G~~eg~~~~~~~~~~~~~-~~~~~~~ 110 (215)
T PRK03482 55 DLGRTRRTAEIIAQACG---------------------CDIIFDPRLRELN--MGVLEKRHIDSLTEEEEGW-RRQLVNG 110 (215)
T ss_pred CcHHHHHHHHHHHHhcC---------------------CCeeEChhccccC--CccccCCcHHHHHhhHHHH-HHhhhcC
Confidence 79999999999986652 5788899999983 5679999999987665432 1111111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHc-CCCCEEEEEechHHHHHHHHHHhcCCCCCCCCCCCCCccCceEEEEEEec
Q 029359 82 DDKLWKADAREPFEEVTARGMEFMKWLWT-RQEKEIAVVSHGIFLQQTLNALLNDCQTSPNQELCPRFTNCEIRSVVIVD 160 (194)
Q Consensus 82 ~~~~~~~~~gEs~~~v~~R~~~fL~~l~~-~~~~~IlVVSHGg~Ir~ll~~l~~~~~~~~~~~~~~~~~Ncsit~i~~~~ 160 (194)
...+.+|+|||+.++.+|+..+++++.. +++++|||||||++|+++++.+++.+...+ +.+.+.||+++.+++.+
T Consensus 111 -~~~~~~p~gEs~~~~~~Rv~~~l~~~~~~~~~~~vliVsHg~~i~~l~~~l~~~~~~~~---~~~~~~n~sis~~~~~~ 186 (215)
T PRK03482 111 -TVDGRIPEGESMQELSDRMHAALESCLELPQGSRPLLVSHGIALGCLVSTILGLPAWAE---RRLRLRNCSISRVDYQE 186 (215)
T ss_pred -CCccCCCCCccHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHHHHHhCCChhhh---hccCCCCcEEEEEEEeC
Confidence 2245567999999999999999999875 456789999999999999999998765543 24679999999999965
Q ss_pred C
Q 029359 161 Q 161 (194)
Q Consensus 161 ~ 161 (194)
+
T Consensus 187 ~ 187 (215)
T PRK03482 187 S 187 (215)
T ss_pred C
Confidence 4
No 11
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=99.88 E-value=1.2e-22 Score=164.34 Aligned_cols=130 Identities=17% Similarity=0.063 Sum_probs=102.9
Q ss_pred cchhHHHHHHHhhCCCCCCCCCCCCCCCcccccccCCCCCeeeccchhhhcCCCCCCCCCCHHHHHhhCCCCCccccccc
Q 029359 2 GGCRTLQTAVGVFGGDGESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDFKLIESE 81 (194)
Q Consensus 2 ~L~RA~qTA~ii~~~~~~~~~~~~~~~p~~~~~~~~~~~pi~~~~~LrE~~g~~~~~eG~~~~el~~~~P~~~~~~~~~~ 81 (194)
||+||+|||+++....+ +|+.++++|+|+. +|.|+|++.+++.+. + .|..|..+
T Consensus 54 pl~Ra~qTA~~i~~~~~---------------------~~~~~~~~L~E~~--~G~~eG~~~~e~~~~-~--~~~~~~~~ 107 (204)
T TIGR03848 54 PLERCRETAEPIAEARG---------------------LPPRVDERLGECD--YGDWTGRELKELAKE-P--LWPVVQAH 107 (204)
T ss_pred cHHHHHHHHHHHHHhcC---------------------CCceECcccccCC--CCeeCCcCHHHHhCc-H--HHHHHhcC
Confidence 79999999999987652 5788999999983 567999999999754 1 13333322
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHcC------CCCEEEEEechHHHHHHHHHHhcCCCCCCCCCCCCCccCceEEE
Q 029359 82 DDKLWKADAREPFEEVTARGMEFMKWLWTR------QEKEIAVVSHGIFLQQTLNALLNDCQTSPNQELCPRFTNCEIRS 155 (194)
Q Consensus 82 ~~~~~~~~~gEs~~~v~~R~~~fL~~l~~~------~~~~IlVVSHGg~Ir~ll~~l~~~~~~~~~~~~~~~~~Ncsit~ 155 (194)
+ ..+.+|+|||+.++.+|+..+++.+.+. ++++|+|||||++|+++++.+++.+...+ +...++||+++.
T Consensus 108 ~-~~~~~p~gEs~~~~~~R~~~~l~~~~~~~~~~~~~~~~vliVsHg~~ir~ll~~~lg~~~~~~---~~~~~~n~sit~ 183 (204)
T TIGR03848 108 P-SAAVFPGGESLAQVQARAVAAVREHDARLAAEHGPDAVWVACSHGDVIKSVLADALGMHLDLF---QRIVVDPCSVSV 183 (204)
T ss_pred c-ccCCCCCCCCHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEeCChHHHHHHHHHhCCCHHHh---heeeeCCCeEEE
Confidence 2 2344679999999999999999988642 56799999999999999999988765544 245799999999
Q ss_pred EEEecC
Q 029359 156 VVIVDQ 161 (194)
Q Consensus 156 i~~~~~ 161 (194)
+++.++
T Consensus 184 l~~~~~ 189 (204)
T TIGR03848 184 VRYTPL 189 (204)
T ss_pred EEEeCC
Confidence 999764
No 12
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=99.88 E-value=9.9e-23 Score=169.81 Aligned_cols=137 Identities=12% Similarity=0.005 Sum_probs=104.3
Q ss_pred cchhHHHHHHHhhCCCCCCCCCCCCCCCcccccccCCCCCeeeccchhhhcCCCCCCCCCCHHHHHhhCCCCCccccccc
Q 029359 2 GGCRTLQTAVGVFGGDGESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDFKLIESE 81 (194)
Q Consensus 2 ~L~RA~qTA~ii~~~~~~~~~~~~~~~p~~~~~~~~~~~pi~~~~~LrE~~g~~~~~eG~~~~el~~~~P~~~~~~~~~~ 81 (194)
||+||+|||++|+...+ . ...|+.++++|+|+. +|.|+|++.+++.+.||...+..|...
T Consensus 56 pl~Ra~qTA~ii~~~~~--------~----------~~~~i~~~~~L~E~~--~G~~eG~~~~ei~~~~p~~~~~~w~~~ 115 (245)
T TIGR01258 56 LLKRAIHTLNIALDELD--------Q----------LWIPVKKSWRLNERH--YGALQGLNKAETAAKYGEEQVNIWRRS 115 (245)
T ss_pred ChHHHHHHHHHHHHhcC--------C----------CCCCeeeCccccccc--CCCCcCCCHHHHHHHhhHHHHHHHHhh
Confidence 79999999999987652 0 014677889999983 567999999999999985312222111
Q ss_pred C-----------------CCCC------CCCCCCCHHHHHHHHHHHHHHHHc---CCCCEEEEEechHHHHHHHHHHhcC
Q 029359 82 D-----------------DKLW------KADAREPFEEVTARGMEFMKWLWT---RQEKEIAVVSHGIFLQQTLNALLND 135 (194)
Q Consensus 82 ~-----------------~~~~------~~~~gEs~~~v~~R~~~fL~~l~~---~~~~~IlVVSHGg~Ir~ll~~l~~~ 135 (194)
. +..| ..|+|||+.++.+|+..+|+++.. .++++|+|||||++|+++++.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~d~~y~~~~~~~~p~GES~~~~~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~vir~l~~~l~~l 195 (245)
T TIGR01258 116 FDVPPPPIDESDPRSPHNDPRYAHLDPKVLPLTESLKDTIARVLPYWNDEIAPDLLSGKRVLIVAHGNSLRALVKHLEGI 195 (245)
T ss_pred ccCCCCcCCcccccccccChhhhcCCcccCCCCCCHHHHHHHHHHHHHHHHhhhhcCCCEEEEEcChHHHHHHHHHHHCc
Confidence 0 1111 257899999999999999999863 3568999999999999999999887
Q ss_pred CCCCCCCCCCCCccCceEEEEEEecC
Q 029359 136 CQTSPNQELCPRFTNCEIRSVVIVDQ 161 (194)
Q Consensus 136 ~~~~~~~~~~~~~~Ncsit~i~~~~~ 161 (194)
+.... +...+.||+++.+++++.
T Consensus 196 ~~~~~---~~~~~~~~~~~~~~~~~~ 218 (245)
T TIGR01258 196 SDEEI---LELNIPTGIPLVYELDEN 218 (245)
T ss_pred CHHHH---hheecCCCceEEEEECCC
Confidence 65544 256789999999999554
No 13
>PRK13462 acid phosphatase; Provisional
Probab=99.88 E-value=3e-22 Score=162.50 Aligned_cols=123 Identities=14% Similarity=0.035 Sum_probs=99.5
Q ss_pred cchhHHHHHHHhhCCCCCCCCCCCCCCCcccccccCCCCCeeeccchhhhcCCCCCCCCCCHHHHHhhCCCCCccccccc
Q 029359 2 GGCRTLQTAVGVFGGDGESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDFKLIESE 81 (194)
Q Consensus 2 ~L~RA~qTA~ii~~~~~~~~~~~~~~~p~~~~~~~~~~~pi~~~~~LrE~~g~~~~~eG~~~~el~~~~P~~~~~~~~~~ 81 (194)
||+||+|||+++ .. ..++++++|||+. +|.|+|++..|+.+.||++ ..|.
T Consensus 61 pl~Ra~qTA~~i--~~----------------------~~~~~~~~LrE~~--~G~~eG~~~~ei~~~~~~~--~~~~-- 110 (203)
T PRK13462 61 PRRRALDTAKLA--GL----------------------TVDEVSGLLAEWD--YGSYEGLTTPQIRESEPDW--LVWT-- 110 (203)
T ss_pred chHHHHHHHHHh--cC----------------------cccccCccccccC--CccccCCcHHHHHHhCchH--Hhhc--
Confidence 799999999987 22 1225688999983 5679999999999999863 2221
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHc-CCCCEEEEEechHHHHHHHHHHhcCCCCCCCCCCCCCccCceEEEEEEec
Q 029359 82 DDKLWKADAREPFEEVTARGMEFMKWLWT-RQEKEIAVVSHGIFLQQTLNALLNDCQTSPNQELCPRFTNCEIRSVVIVD 160 (194)
Q Consensus 82 ~~~~~~~~~gEs~~~v~~R~~~fL~~l~~-~~~~~IlVVSHGg~Ir~ll~~l~~~~~~~~~~~~~~~~~Ncsit~i~~~~ 160 (194)
...|+|||+.++.+|+..+++.+.. +++++|+|||||++|+++++.+++.+...+ +.+.++||+++.+++.+
T Consensus 111 ----~~~p~gES~~~~~~Rv~~~l~~i~~~~~~~~vliVsHg~vir~ll~~~l~~~~~~~---~~~~~~~~s~s~~~~~~ 183 (203)
T PRK13462 111 ----HGCPGGESVAQVNERADRAVALALEHMESRDVVFVSHGHFSRAVITRWVELPLAEG---SRFAMPTASIAICGFEH 183 (203)
T ss_pred ----CCCCCCccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHhCCCHHHh---hhcccCCceEEEEEeeC
Confidence 1236899999999999999999875 467899999999999999999988765544 35679999999999966
Q ss_pred C
Q 029359 161 Q 161 (194)
Q Consensus 161 ~ 161 (194)
+
T Consensus 184 ~ 184 (203)
T PRK13462 184 G 184 (203)
T ss_pred C
Confidence 5
No 14
>PRK01112 phosphoglyceromutase; Provisional
Probab=99.88 E-value=1.8e-22 Score=166.57 Aligned_cols=116 Identities=15% Similarity=0.085 Sum_probs=93.5
Q ss_pred CCeeeccchhhhcCCCCCCCCCCHHHHHhhCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHH-c--CCCCEE
Q 029359 40 PPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDFKLIESEDDKLWKADAREPFEEVTARGMEFMKWLW-T--RQEKEI 116 (194)
Q Consensus 40 ~pi~~~~~LrE~~g~~~~~eG~~~~el~~~~P~~~~~~~~~~~~~~~~~~~gEs~~~v~~R~~~fL~~l~-~--~~~~~I 116 (194)
+|++++++|+|+. +|.|+|++.+++.++||+. +..++.++ ..+.+|+|||+.++.+|+..+++.+. . .++++|
T Consensus 101 ~~~~~~~~L~E~~--~G~~eG~~~~ei~~~~~~~-~~~~w~~~-~~~~~p~GES~~d~~~Rv~~~l~~~~~~~~~~~~~i 176 (228)
T PRK01112 101 IPLFQSSALNERM--YGELQGKNKAETAEKFGEE-QVKLWRRS-YKTAPPQGESLEDTGQRTLPYFQNRILPHLQQGKNV 176 (228)
T ss_pred CCeeecCcccccc--ccccCCCCHHHHHHHCcHH-HHHHHhCc-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 6788999999984 5679999999999999864 32222322 24567899999999999999999764 3 256899
Q ss_pred EEEechHHHHHHHHHHhcCCCCCCCCCCCCCccCceEEEEEEecCc
Q 029359 117 AVVSHGIFLQQTLNALLNDCQTSPNQELCPRFTNCEIRSVVIVDQS 162 (194)
Q Consensus 117 lVVSHGg~Ir~ll~~l~~~~~~~~~~~~~~~~~Ncsit~i~~~~~~ 162 (194)
+|||||++|+++++.+++.+...+ +.+.+.||++++++++.+.
T Consensus 177 lVVsHg~vir~l~~~ll~~~~~~~---~~~~~~~~~~~~~~~~~~~ 219 (228)
T PRK01112 177 FVSAHGNSLRSLIMDLEKLSEEEV---LSLELPTGKPIVYEWTGQK 219 (228)
T ss_pred EEEeCHHHHHHHHHHHhCCCHHHH---hhcccCCcceEEEEECCCC
Confidence 999999999999999998776654 3567999999999996654
No 15
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=99.87 E-value=4.7e-22 Score=164.81 Aligned_cols=137 Identities=16% Similarity=0.016 Sum_probs=104.6
Q ss_pred cchhHHHHHHHhhCCCCCCCCCCCCCCCcccccccCCCCCeeeccchhhhcCCCCCCCCCCHHHHHhhCCCCCccccccc
Q 029359 2 GGCRTLQTAVGVFGGDGESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDFKLIESE 81 (194)
Q Consensus 2 ~L~RA~qTA~ii~~~~~~~~~~~~~~~p~~~~~~~~~~~pi~~~~~LrE~~g~~~~~eG~~~~el~~~~P~~~~~~~~~~ 81 (194)
||+||+|||+++....+ ...+|++++++|+|+. +|.|+|++.+++.++||+..+..|...
T Consensus 44 pl~Ra~qTA~~i~~~~~------------------~~~~~~~~~~~L~E~~--~G~~EG~~~~ei~~~~~~~~~~~~~~~ 103 (236)
T PTZ00123 44 VLKRAIKTAWIVLEELG------------------QLHVPVIKSWRLNERH--YGALQGLNKSETAEKHGEEQVKIWRRS 103 (236)
T ss_pred ChHHHHHHHHHHHHhcC------------------CCCCCceeCchhhhcc--cccccCCCHHHHHHHccHHHHHHHhcc
Confidence 79999999999987652 0125778899999973 567999999999999986312212110
Q ss_pred CC-----------------------CCCCCCCCCCHHHHHHHHHHHHHHHH-c--CCCCEEEEEechHHHHHHHHHHhcC
Q 029359 82 DD-----------------------KLWKADAREPFEEVTARGMEFMKWLW-T--RQEKEIAVVSHGIFLQQTLNALLND 135 (194)
Q Consensus 82 ~~-----------------------~~~~~~~gEs~~~v~~R~~~fL~~l~-~--~~~~~IlVVSHGg~Ir~ll~~l~~~ 135 (194)
.. ....+++|||+.++.+|+..+++++. . ..+++|||||||++|+++++.+++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gES~~~~~~Rv~~~l~~li~~~~~~~~~vliVsHG~vir~ll~~l~~~ 183 (236)
T PTZ00123 104 YDIPPPPLEKSDERYPGNDPVYKDIPKDALPNTECLKDTVERVLPYWEDHIAPDILAGKKVLVAAHGNSLRALVKYLDKM 183 (236)
T ss_pred cCCCCCCcccccccccccchhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCHHHHHHHHHHHhCC
Confidence 00 01234689999999999999999864 2 3568999999999999999999887
Q ss_pred CCCCCCCCCCCCccCceEEEEEEecC
Q 029359 136 CQTSPNQELCPRFTNCEIRSVVIVDQ 161 (194)
Q Consensus 136 ~~~~~~~~~~~~~~Ncsit~i~~~~~ 161 (194)
+...+ +...++||++++|+++++
T Consensus 184 ~~~~~---~~~~~~n~~~~~~~~~~~ 206 (236)
T PTZ00123 184 SEEDI---LELNIPTGVPLVYELDEN 206 (236)
T ss_pred CHHHH---hhccCCCCceEEEEECCC
Confidence 65544 245799999999999666
No 16
>PRK01295 phosphoglyceromutase; Provisional
Probab=99.87 E-value=7.8e-22 Score=160.35 Aligned_cols=136 Identities=12% Similarity=0.012 Sum_probs=106.9
Q ss_pred cchhHHHHHHHhhCCCCCCCCCCCCCCCcccccccCCCCCeeeccchhhhcCCCCCCCCCCHHHHHhhCCCCCccccccc
Q 029359 2 GGCRTLQTAVGVFGGDGESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDFKLIESE 81 (194)
Q Consensus 2 ~L~RA~qTA~ii~~~~~~~~~~~~~~~p~~~~~~~~~~~pi~~~~~LrE~~g~~~~~eG~~~~el~~~~P~~~~~~~~~~ 81 (194)
||+||+|||++|....+ ...+++.++++|+|+. +|.|+|++.++++++||......| .+
T Consensus 58 pl~Ra~qTA~~i~~~~~------------------~~~~~~~~~~~L~E~~--~G~~eg~~~~e~~~~~~~~~~~~~-~~ 116 (206)
T PRK01295 58 ALSRAQHTCQLILEELG------------------QPGLETIRDQALNERD--YGDLSGLNKDDARAKWGEEQVHIW-RR 116 (206)
T ss_pred CcHHHHHHHHHHHHHcC------------------CCCCCeEECCcccccc--cccccCCcHHHHHHHchHHHHHHh-hc
Confidence 79999999999987652 0125788999999983 567999999999999986323323 22
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHH-HHHHHc--CCCCEEEEEechHHHHHHHHHHhcCCCCCCCCCCCCCccCceEEEEEE
Q 029359 82 DDKLWKADAREPFEEVTARGMEF-MKWLWT--RQEKEIAVVSHGIFLQQTLNALLNDCQTSPNQELCPRFTNCEIRSVVI 158 (194)
Q Consensus 82 ~~~~~~~~~gEs~~~v~~R~~~f-L~~l~~--~~~~~IlVVSHGg~Ir~ll~~l~~~~~~~~~~~~~~~~~Ncsit~i~~ 158 (194)
+..+.+|+|||+.++.+|+..+ ++.+.. ..+++|+|||||++|+++++.+++.+...+ +...++|++..++.+
T Consensus 117 -~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVtHg~~ir~l~~~~l~~~~~~~---~~~~~~~~~~~~~~~ 192 (206)
T PRK01295 117 -SYDVPPPGGESLKDTGARVLPYYLQEILPRVLRGERVLVAAHGNSLRALVMVLDGLTPEQI---LKLELATGVPIVYRL 192 (206)
T ss_pred -ccCCCCcCCCCHHHHHHHHHHHHHHHHHHhccCCCeEEEEcChHHHHHHHHHHhCCCHHHH---hhcCCCCCCcEEEEe
Confidence 2345678999999999999997 456654 356899999999999999999998876654 356789999999999
Q ss_pred ecCc
Q 029359 159 VDQS 162 (194)
Q Consensus 159 ~~~~ 162 (194)
.+..
T Consensus 193 ~~~~ 196 (206)
T PRK01295 193 NADS 196 (206)
T ss_pred cCCC
Confidence 6554
No 17
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=99.87 E-value=9.8e-22 Score=164.00 Aligned_cols=148 Identities=14% Similarity=0.030 Sum_probs=109.2
Q ss_pred cchhHHHHHHHhhCCCCCCCCCCCCCCCcccccccCCCCCeeeccchhhhcCCCCCCCCCCHHHHHhhCCCCCccccccc
Q 029359 2 GGCRTLQTAVGVFGGDGESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDFKLIESE 81 (194)
Q Consensus 2 ~L~RA~qTA~ii~~~~~~~~~~~~~~~p~~~~~~~~~~~pi~~~~~LrE~~g~~~~~eG~~~~el~~~~P~~~~~~~~~~ 81 (194)
||+||+|||++|....+ ...++++++++|+|+. +|.|+|++.+++.++||...+..|...
T Consensus 56 pl~Ra~qTA~~i~~~~~------------------~~~~~~~~~~~L~E~~--fG~~eG~~~~ei~~~~~~~~~~~~~~~ 115 (247)
T PRK14115 56 VLKRAIRTLWIVLDELD------------------QMWLPVEKSWRLNERH--YGALQGLNKAETAAKYGDEQVKIWRRS 115 (247)
T ss_pred CCHHHHHHHHHHHHHcC------------------CCCCCceECccccccc--cccccCCCHHHHHHHhhHHHHHHHhcc
Confidence 79999999999986652 0114778899999983 566999999999999885322222211
Q ss_pred C-----------------CC------CCCCCCCCCHHHHHHHHHHHHHHHHc---CCCCEEEEEechHHHHHHHHHHhcC
Q 029359 82 D-----------------DK------LWKADAREPFEEVTARGMEFMKWLWT---RQEKEIAVVSHGIFLQQTLNALLND 135 (194)
Q Consensus 82 ~-----------------~~------~~~~~~gEs~~~v~~R~~~fL~~l~~---~~~~~IlVVSHGg~Ir~ll~~l~~~ 135 (194)
. +. ....|+|||+.++.+|+..+|+++.. .++++|+|||||++|+++++.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~l~~~i~~~~~~~~~vlvVtHggvir~l~~~ll~~ 195 (247)
T PRK14115 116 YDVPPPALEKDDERYPGHDPRYAKLPEEELPLTESLKDTIARVLPYWNETIAPQLKSGKRVLIAAHGNSLRALVKYLDNI 195 (247)
T ss_pred cccCCCcccccccccccccchhhcccCCCCCCCCcHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeChHHHHHHHHHHhCC
Confidence 0 00 11357999999999999999998753 3568999999999999999999887
Q ss_pred CCCCCCCCCCCCccCceEEEEEEecCccc-CCCCCCCC
Q 029359 136 CQTSPNQELCPRFTNCEIRSVVIVDQSIR-GSCYPGTI 172 (194)
Q Consensus 136 ~~~~~~~~~~~~~~Ncsit~i~~~~~~~~-~~~~~~~~ 172 (194)
+...+ +...++||+++.+++.+.... --.|.|.+
T Consensus 196 ~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 230 (247)
T PRK14115 196 SDEEI---LELNIPTGVPLVYELDENLKPIKHYYLGDA 230 (247)
T ss_pred CHHHh---heeecCCCceEEEEECCCCcEeeeEecCCh
Confidence 65554 356799999999999665311 11555544
No 18
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.86 E-value=1.2e-21 Score=171.93 Aligned_cols=131 Identities=14% Similarity=0.018 Sum_probs=109.1
Q ss_pred cchhHHHHHHHhhCCCCCCCCCCCCCCCcccccccCCCCCeeeccchhhhcCCCCCCCCCCHHHHHhhCCCCCccccccc
Q 029359 2 GGCRTLQTAVGVFGGDGESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDFKLIESE 81 (194)
Q Consensus 2 ~L~RA~qTA~ii~~~~~~~~~~~~~~~p~~~~~~~~~~~pi~~~~~LrE~~g~~~~~eG~~~~el~~~~P~~~~~~~~~~ 81 (194)
||+||+|||++++...+ .+++++++|+|+. +|+|+|++.+++.++||.. +..|+.+
T Consensus 226 pl~Ra~qTA~~i~~~~~---------------------~~~~~~~~L~E~~--~G~~eg~~~~ei~~~~p~~-~~~w~~~ 281 (372)
T PRK07238 226 PLQRARDTAAAAAKALG---------------------LDVTVDDDLIETD--FGAWEGLTFAEAAERDPEL-HRAWLAD 281 (372)
T ss_pred ChHHHHHHHHHHHHhcC---------------------CCcEECccceeCC--CCccCCCCHHHHHHHCHHH-HHHHHhC
Confidence 79999999999987662 5788899999983 5679999999999999974 5555543
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHc-CCCCEEEEEechHHHHHHHHHHhcCCCCCCCCCCCCCccCceEEEEEEec
Q 029359 82 DDKLWKADAREPFEEVTARGMEFMKWLWT-RQEKEIAVVSHGIFLQQTLNALLNDCQTSPNQELCPRFTNCEIRSVVIVD 160 (194)
Q Consensus 82 ~~~~~~~~~gEs~~~v~~R~~~fL~~l~~-~~~~~IlVVSHGg~Ir~ll~~l~~~~~~~~~~~~~~~~~Ncsit~i~~~~ 160 (194)
+ .+.+++|||+.++.+|+..++++|.. +++++|+|||||++|+++++.+++.+...+ +...++||+++.+++..
T Consensus 282 ~--~~~~p~gEs~~~~~~Rv~~~l~~l~~~~~~~~vlvVtHg~~ir~ll~~~l~~~~~~~---~~~~~~~~~~s~l~~~~ 356 (372)
T PRK07238 282 T--SVAPPGGESFDAVARRVRRARDRLIAEYPGATVLVVSHVTPIKTLLRLALDAGPGVL---YRLHLDLASLSIAEFYP 356 (372)
T ss_pred C--CCCCcCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEEChHHHHHHHHHHhCCCHHHh---hhcccCCceEEEEEEEC
Confidence 3 46678999999999999999999875 456899999999999999999988765543 34678999999999965
Q ss_pred C
Q 029359 161 Q 161 (194)
Q Consensus 161 ~ 161 (194)
+
T Consensus 357 ~ 357 (372)
T PRK07238 357 D 357 (372)
T ss_pred C
Confidence 4
No 19
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=99.86 E-value=2.4e-21 Score=156.69 Aligned_cols=133 Identities=20% Similarity=0.102 Sum_probs=108.3
Q ss_pred cchhHHHHHHHhhCCCCCCCCCCCCCCCcccccccCCCCCeeeccchhhhcCCCCCCCCCCHHHHHhhCCCCCccccccc
Q 029359 2 GGCRTLQTAVGVFGGDGESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDFKLIESE 81 (194)
Q Consensus 2 ~L~RA~qTA~ii~~~~~~~~~~~~~~~p~~~~~~~~~~~pi~~~~~LrE~~g~~~~~eG~~~~el~~~~P~~~~~~~~~~ 81 (194)
+|+||+|||++++...+ .++.++++|+|+. +|.|+|++..++.++||.. +..+..+
T Consensus 58 ~l~Ra~~TA~~~a~~~~---------------------~~~~~~~~l~E~~--~G~~eg~~~~e~~~~~p~~-~~~~~~~ 113 (208)
T COG0406 58 PLKRAQQTAEPLAEELG---------------------LPLEVDDRLREID--FGDWEGLTIDELAEEPPEE-LAAWLAD 113 (208)
T ss_pred chHHHHHHHHHHHHhcC---------------------CCceecCCeeEee--cccccCCcHHHHHHhCHHH-HHHHhcC
Confidence 78999999999998873 4578899999983 5679999999999999974 4334333
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEechHHHHHHHHHHhcCCCCCCCCCCCCCccCceEEEEEEec
Q 029359 82 DDKLWKADAREPFEEVTARGMEFMKWLWTR-QEKEIAVVSHGIFLQQTLNALLNDCQTSPNQELCPRFTNCEIRSVVIVD 160 (194)
Q Consensus 82 ~~~~~~~~~gEs~~~v~~R~~~fL~~l~~~-~~~~IlVVSHGg~Ir~ll~~l~~~~~~~~~~~~~~~~~Ncsit~i~~~~ 160 (194)
+ ..+..++|||+.++.+|+..+++++... .+++|+|||||++|+++++.+++.+.... +...++||+++.+++++
T Consensus 114 ~-~~~~~~~gEs~~~~~~R~~~~~~~~~~~~~~~~vlvVsHg~~ir~l~~~~~~~~~~~~---~~~~~~~~si~~l~~~~ 189 (208)
T COG0406 114 P-YLAPPPGGESLADVSKRVVAALAELLRSPPGNNVLVVSHGGVIRALLAYLLGLDLEEL---WRLRLDNASVTVLEFDD 189 (208)
T ss_pred c-cccCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEChHHHHHHHHHhcCCChhhH---HhcCCCCceEEEEEeeC
Confidence 2 3444557999999999999999999864 34489999999999999999988654422 35789999999999988
Q ss_pred Cc
Q 029359 161 QS 162 (194)
Q Consensus 161 ~~ 162 (194)
+.
T Consensus 190 ~~ 191 (208)
T COG0406 190 GR 191 (208)
T ss_pred CC
Confidence 75
No 20
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.79 E-value=5.1e-19 Score=165.72 Aligned_cols=147 Identities=13% Similarity=0.042 Sum_probs=106.2
Q ss_pred cchhHHHHHHHhhCCCC-CCCCCCCCCCCcccccccCCCCCeeeccchhhhcCCCCCCCCCCHHHHHhhCCCCCcccccc
Q 029359 2 GGCRTLQTAVGVFGGDG-ESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDFKLIES 80 (194)
Q Consensus 2 ~L~RA~qTA~ii~~~~~-~~~~~~~~~~p~~~~~~~~~~~pi~~~~~LrE~~g~~~~~eG~~~~el~~~~P~~~~~~~~~ 80 (194)
+|+||+|||+++..... ....+.. +-+. . .....|++++++|+|+. +|.|||++.+|++++||+. |..|..
T Consensus 474 pl~Ra~~TA~~i~~~~~~~~~~~~~-a~~~-~---~~~~~~~~~~~~L~Ei~--fG~wEG~t~~ei~~~~p~~-~~~~~~ 545 (664)
T PTZ00322 474 CAKRCTETVHYFAEESILQQSTASA-ASSQ-S---PSLNCRVLYFPTLDDIN--HGDCEGQLLSDVRRTMPNT-LQSMKA 545 (664)
T ss_pred CcHHHHHHHHHHHhccccccccccc-cccc-c---ccccccccchhhhCcCC--CcccCCCCHHHHHHhCcHH-HHHHHh
Confidence 79999999999865310 0000000 0000 0 01135788899999984 5679999999999999985 666665
Q ss_pred cCCCCCCCCCCCCHHHHH-HHHHHHHHHHHcCCCCEEEEEechHHHHHHHHHHhcC-----CCCCCCCCCCCCccCceEE
Q 029359 81 EDDKLWKADAREPFEEVT-ARGMEFMKWLWTRQEKEIAVVSHGIFLQQTLNALLND-----CQTSPNQELCPRFTNCEIR 154 (194)
Q Consensus 81 ~~~~~~~~~~gEs~~~v~-~R~~~fL~~l~~~~~~~IlVVSHGg~Ir~ll~~l~~~-----~~~~~~~~~~~~~~Ncsit 154 (194)
++ ..+.+|+|||+.++. .|+..++++|.. ..++|+|||||++|+++++++++. +.... +...+.+++++
T Consensus 546 d~-~~~~~P~GES~~d~~~~R~~~~i~~l~~-~~~~ilvVsHg~vir~ll~~~~~~~~~~~~~~~~---~~~~i~~~~~~ 620 (664)
T PTZ00322 546 DP-YYTAWPNGECIHQVFNARLEPHIHDIQA-STTPVLVVSHLHLLQGLYSYFVTDGDNIVAPQNA---YKIDIPFEHVI 620 (664)
T ss_pred CC-CcCCCCCCcCHHHHHHHHHHHHHHHHHc-cCCCEEEEeCcHHHHHHHHHHhcCCccccCcccC---ceeeccCCcEE
Confidence 44 345678999999976 799999999864 347899999999999999999874 33333 35578999999
Q ss_pred EEEEecC
Q 029359 155 SVVIVDQ 161 (194)
Q Consensus 155 ~i~~~~~ 161 (194)
.+++.+.
T Consensus 621 ~i~~~~~ 627 (664)
T PTZ00322 621 KIRMVGF 627 (664)
T ss_pred EEEEecc
Confidence 9998753
No 21
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=99.71 E-value=3.3e-18 Score=130.95 Aligned_cols=102 Identities=26% Similarity=0.288 Sum_probs=83.0
Q ss_pred cchhHHHHHHHhhCCCCCCCCCCCCCCCcccccccCCCCCeeeccchhhhcCCCCCCCCCCHHHHHhhCCCCCccccccc
Q 029359 2 GGCRTLQTAVGVFGGDGESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDFKLIESE 81 (194)
Q Consensus 2 ~L~RA~qTA~ii~~~~~~~~~~~~~~~p~~~~~~~~~~~pi~~~~~LrE~~g~~~~~eG~~~~el~~~~P~~~~~~~~~~ 81 (194)
||.||+|||.+++...+ .++++++.|+|+. ++.|+|++..++.+.||.. +..|..+
T Consensus 55 p~~R~~qTA~~~~~~~~---------------------~~~~~~~~l~E~~--~g~~~g~~~~~~~~~~~~~-~~~~~~~ 110 (158)
T PF00300_consen 55 PLRRCIQTAEIIAEGLG---------------------IEIIVDPRLREID--FGDWEGRPFDEIEEKFPDE-FEAWWSD 110 (158)
T ss_dssp SSHHHHHHHHHHHHHHT---------------------SEEEEEGGGSCCG--CGGGTTSBHHHHHHHHHHH-HHHHHHH
T ss_pred Ccchhhhhhchhhcccc---------------------ccccccccccccc--chhhcccchhhHHhhhhcc-cchhhcc
Confidence 79999999999887652 5789999999984 3557899999999999842 3333332
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHH--cCCCCEEEEEechHHHHHH
Q 029359 82 DDKLWKADAREPFEEVTARGMEFMKWLW--TRQEKEIAVVSHGIFLQQT 128 (194)
Q Consensus 82 ~~~~~~~~~gEs~~~v~~R~~~fL~~l~--~~~~~~IlVVSHGg~Ir~l 128 (194)
+..+.++++||+.++..|+..++++|. ..++++|+|||||++|++|
T Consensus 111 -~~~~~~~~~Es~~~~~~R~~~~~~~l~~~~~~~~~vliVsHg~~i~~~ 158 (158)
T PF00300_consen 111 -PYFYRPPGGESWEDFQQRVKQFLDELIAYKRPGENVLIVSHGGFIRAL 158 (158)
T ss_dssp -TSSCGSTTSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEE-HHHHHHH
T ss_pred -ccccccccCCCHHHHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHhC
Confidence 245666799999999999999999999 5788999999999999985
No 22
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=99.68 E-value=6.4e-17 Score=124.94 Aligned_cols=97 Identities=16% Similarity=-0.028 Sum_probs=77.4
Q ss_pred cchhHHHHHHHhhCCCCCCCCCCCCCCCcccccccCCCCCeeeccchhhhcCCCCCCCCCCHHHHHhhCCCCCccccccc
Q 029359 2 GGCRTLQTAVGVFGGDGESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDFKLIESE 81 (194)
Q Consensus 2 ~L~RA~qTA~ii~~~~~~~~~~~~~~~p~~~~~~~~~~~pi~~~~~LrE~~g~~~~~eG~~~~el~~~~P~~~~~~~~~~ 81 (194)
||+||+|||++++...+ .+ ++.+.|+|+. +|.|+|++.+++.+.||.. +..+
T Consensus 56 pl~Ra~qTa~~i~~~~~---------------------~~-~~~~~L~E~~--~G~~~g~~~~~~~~~~~~~-~~~~--- 107 (155)
T smart00855 56 PLLRARETAEALAIALG---------------------LG-EVDPRLRERD--YGAWEGLTKEEERAKAWTR-PADW--- 107 (155)
T ss_pred chHHHHHHHHHHHHhcC---------------------CC-CCChhhhhcc--cceecCCcHHHHHHHHHHH-Hhcc---
Confidence 78999999999987652 23 3689999983 4568999999999888763 2211
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHcC---CCCEEEEEechHHHHHH
Q 029359 82 DDKLWKADAREPFEEVTARGMEFMKWLWTR---QEKEIAVVSHGIFLQQT 128 (194)
Q Consensus 82 ~~~~~~~~~gEs~~~v~~R~~~fL~~l~~~---~~~~IlVVSHGg~Ir~l 128 (194)
..+.+++|||+.++..|+..|++.+... ..++|+|||||++|+++
T Consensus 108 --~~~~~~~gEs~~~~~~Rv~~~~~~i~~~~~~~~~~vlvVtHg~~ir~~ 155 (155)
T smart00855 108 --LGAAPPGGESLADVVERLVRALEELIATHDKSGQNVLIVSHGGVIRAL 155 (155)
T ss_pred --CCCCCcCCCCHHHHHHHHHHHHHHHHHhcccCCCeEEEEECCcccccC
Confidence 2445679999999999999999999753 56899999999999864
No 23
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=99.55 E-value=1.5e-14 Score=123.83 Aligned_cols=113 Identities=21% Similarity=0.157 Sum_probs=81.7
Q ss_pred cchhHHHHHHHhhCCCCCCCCCCCCCCCcccccccCCCCCeeeccchhhhcCCCCCCCCCCHHHHHhhCCCCCccccccc
Q 029359 2 GGCRTLQTAVGVFGGDGESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDFKLIESE 81 (194)
Q Consensus 2 ~L~RA~qTA~ii~~~~~~~~~~~~~~~p~~~~~~~~~~~pi~~~~~LrE~~g~~~~~eG~~~~el~~~~P~~~~~~~~~~ 81 (194)
||+||+|||++|.+... .+|++++++|||. . .+.+ -|. +
T Consensus 161 PL~RA~qTAeiIa~~~~--------------------~~~v~~d~~LrEG--~-~~~~----------~~~--~------ 199 (299)
T PTZ00122 161 DMTRAKETAEIISEAFP--------------------GVRLIEDPNLAEG--V-PCAP----------DPP--S------ 199 (299)
T ss_pred CcHHHHHHHHHHHHhCC--------------------CCCceeCcccccC--C-cccc----------Ccc--c------
Confidence 79999999999986541 2578889999993 1 1110 011 0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHcC----CCCEEEEEechHHHHHHHHHHhcCCCCCCCCCCCCCccCceEEEEE
Q 029359 82 DDKLWKADAREPFEEVTARGMEFMKWLWTR----QEKEIAVVSHGIFLQQTLNALLNDCQTSPNQELCPRFTNCEIRSVV 157 (194)
Q Consensus 82 ~~~~~~~~~gEs~~~v~~R~~~fL~~l~~~----~~~~IlVVSHGg~Ir~ll~~l~~~~~~~~~~~~~~~~~Ncsit~i~ 157 (194)
..+.++++|+ .++.+|+..+++.+..+ .++.|||||||++|+++++.+++.+...+ +...++||+++.++
T Consensus 200 --~~~~~~gee~-~~~~~Rv~~al~~i~~r~~~~~~~~vLVVsHGgvIR~ll~~lLglp~~~~---~~~~~~N~sit~l~ 273 (299)
T PTZ00122 200 --RGFKPTIEEI-LEDMKRIEAAFEKYFHRPVEDEDSVEIIVCHGNVIRYLVCRALQLPPEAW---LRLSLYNCGITWIV 273 (299)
T ss_pred --cccCCCcchH-HHHHHHHHHHHHHHHHhcccCCCCeEEEEeCChHHHHHHHHHhCcCHHHH---hhccCCCceEEEEE
Confidence 1233445555 66799999999998742 23678999999999999999988765443 34578999999999
Q ss_pred EecC
Q 029359 158 IVDQ 161 (194)
Q Consensus 158 ~~~~ 161 (194)
+.++
T Consensus 274 ~~~~ 277 (299)
T PTZ00122 274 ISSE 277 (299)
T ss_pred EeCC
Confidence 9654
No 24
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=3.7e-13 Score=109.69 Aligned_cols=135 Identities=13% Similarity=-0.008 Sum_probs=99.1
Q ss_pred cchhHHHHHHHhhCCCCCCCCCCCCCCCcccccccCCCCCeeeccchhhhcCCCCCCCCCCHHHHHhhCCCCCc-ccccc
Q 029359 2 GGCRTLQTAVGVFGGDGESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDF-KLIES 80 (194)
Q Consensus 2 ~L~RA~qTA~ii~~~~~~~~~~~~~~~p~~~~~~~~~~~pi~~~~~LrE~~g~~~~~eG~~~~el~~~~P~~~~-~~~~~ 80 (194)
+|+||.|||++|+...+ ...+|++...+|+|.. +|.++|+...|+.++|+...+ ..++.
T Consensus 61 ~l~RakqT~~~il~~~~------------------~~~~pv~~~~~L~ER~--yG~l~Gl~~~e~~~~~g~~~~~~~~r~ 120 (214)
T KOG0235|consen 61 DLKRAKQTAELILEELK------------------QKKVPVLYTWRLNERH--YGDLQGLNKRETAKRYGEEQVYEDPRL 120 (214)
T ss_pred HHHHHHHHHHHHHHhhc------------------cCCcceEechhhchhh--hccccCccHHHHHHHcchhccccchhh
Confidence 58999999999998872 1237999999999993 456999999999999996432 22221
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHHHc---CCCCEEEEEechHHHHHHHHHHhcCCCCCCCCCCCCCccCceEEEEE
Q 029359 81 EDDKLWKADAREPFEEVTARGMEFMKWLWT---RQEKEIAVVSHGIFLQQTLNALLNDCQTSPNQELCPRFTNCEIRSVV 157 (194)
Q Consensus 81 ~~~~~~~~~~gEs~~~v~~R~~~fL~~l~~---~~~~~IlVVSHGg~Ir~ll~~l~~~~~~~~~~~~~~~~~Ncsit~i~ 157 (194)
.....-..|.|||+.++.+|+..|+++.+. ..+++|+||+||..+|+++..+.+....... ...+.++-...++
T Consensus 121 ~~~~~~~~p~~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGnsLR~i~~~l~g~s~~~i~---~~~~~t~vp~v~~ 197 (214)
T KOG0235|consen 121 SDLDEIPLPDGESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNSLRAIVKHLEGISDEAIK---ELNLPTGVPIVYE 197 (214)
T ss_pred ccCCcCCCCCCccHHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHHHHHHHHHHhcCCHhhhh---heecccCCceEEE
Confidence 111122356899999999999999998764 3568999999999999999999877655431 2234444444555
Q ss_pred Ee
Q 029359 158 IV 159 (194)
Q Consensus 158 ~~ 159 (194)
++
T Consensus 198 ld 199 (214)
T KOG0235|consen 198 LD 199 (214)
T ss_pred cc
Confidence 43
No 25
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=99.30 E-value=9.5e-12 Score=95.34 Aligned_cols=60 Identities=25% Similarity=0.263 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHcC-CCCEEEEEechHHHHHHHHHHhcCCCCCCCCCCCCCccCceEEEEEEecC
Q 029359 99 ARGMEFMKWLWTR-QEKEIAVVSHGIFLQQTLNALLNDCQTSPNQELCPRFTNCEIRSVVIVDQ 161 (194)
Q Consensus 99 ~R~~~fL~~l~~~-~~~~IlVVSHGg~Ir~ll~~l~~~~~~~~~~~~~~~~~Ncsit~i~~~~~ 161 (194)
+|+..+++.+... ++++|+|||||++|+++++.+.+.+...+ +...++||+++.+++.+.
T Consensus 84 ~R~~~~~~~l~~~~~~~~iliV~H~~~i~~~~~~l~~~~~~~~---~~~~~~~~s~~~~~~~~~ 144 (153)
T cd07067 84 ARVLPALEELIAPHDGKNVLIVSHGGVLRALLAYLLGLSDEDI---LRLNLPNGSISVLELDEN 144 (153)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeChHHHHHHHHHHhCCCHHHH---HhcCCCCceEEEEEEeCC
Confidence 8999999998864 67899999999999999999987654432 245789999999999765
No 26
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=99.29 E-value=7.4e-12 Score=101.25 Aligned_cols=145 Identities=13% Similarity=0.065 Sum_probs=107.2
Q ss_pred chhHHHHHHHhhCCCCCCCCCCCCCCCcccccccCCCCCeeeccchhhhcCCCCCCCCCCHHHHHhhCCCCCcccccccC
Q 029359 3 GCRTLQTAVGVFGGDGESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDFKLIESED 82 (194)
Q Consensus 3 L~RA~qTA~ii~~~~~~~~~~~~~~~p~~~~~~~~~~~pi~~~~~LrE~~g~~~~~eG~~~~el~~~~P~~~~~~~~~~~ 82 (194)
|+||++|+.+++...+ + ..+|++..=+|.|.. +|.++|++..+..++|.+..+..|+.+-
T Consensus 58 L~RAi~T~~i~L~e~d--------~----------~~ipv~kswrLNERh--YG~LqGlnK~~t~~kyGeeqv~~wRRsy 117 (230)
T COG0588 58 LKRAIKTLNIVLEESD--------Q----------LWIPVIKSWRLNERH--YGALQGLNKAETAAKYGEEQVLIWRRSY 117 (230)
T ss_pred HHHHHHHHHHHhhhhc--------c----------cCcchhhHHHhhhhh--hhhhhcCChHHHHHHHhHHHHHHHHHhc
Confidence 7999999999998863 1 136777777999983 4569999999999999853333333210
Q ss_pred C-----------------CCCC------CCCCCCHHHHHHHHHHHHHHHHc---CCCCEEEEEechHHHHHHHHHHhcCC
Q 029359 83 D-----------------KLWK------ADAREPFEEVTARGMEFMKWLWT---RQEKEIAVVSHGIFLQQTLNALLNDC 136 (194)
Q Consensus 83 ~-----------------~~~~------~~~gEs~~~v~~R~~~fL~~l~~---~~~~~IlVVSHGg~Ir~ll~~l~~~~ 136 (194)
+ ..|. .|..||..++.+|+..+++..+. ..+++|+||+||-.||+|+.+|.+.+
T Consensus 118 di~PP~~~~~~~~~~~~d~ry~~~~~~~~p~~EsLkdt~~Rv~Pyw~~~I~p~l~~Gk~VlI~AHGNSlRaLiK~L~~iS 197 (230)
T COG0588 118 DIPPPKLEKDDERSPHRDRRYAHLDIGGLPLTESLKDTVERVLPYWEDDIAPNLKSGKNVLIVAHGNSLRALIKYLEGIS 197 (230)
T ss_pred CCCCCCcccccccccccccccccccccCCCccchHHHHHHHhhHHHHHHhhHHHhCCCeEEEEecchhHHHHHHHHhCCC
Confidence 0 0111 12459999999999999888764 46899999999999999999999987
Q ss_pred CCCCCCCCCCCccCceEEEEEEecCc-ccCCCCCC
Q 029359 137 QTSPNQELCPRFTNCEIRSVVIVDQS-IRGSCYPG 170 (194)
Q Consensus 137 ~~~~~~~~~~~~~Ncsit~i~~~~~~-~~~~~~~~ 170 (194)
.+++. ...+.|.-=-+|++++.. ++...|+|
T Consensus 198 d~dI~---~l~IPtg~Plvyeld~~l~~~~~~yL~ 229 (230)
T COG0588 198 DEDIL---DLNIPTGIPLVYELDKNLKVISAYYLG 229 (230)
T ss_pred HHHhh---hcccCCCCcEEEEECCCCcCccccccC
Confidence 77663 356777777888886655 44445554
No 27
>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]
Probab=98.94 E-value=3.9e-09 Score=93.56 Aligned_cols=110 Identities=19% Similarity=0.225 Sum_probs=80.9
Q ss_pred cchhHHHHHHHhhCCCCCCCCCCCCCCCcccccccCCCCCeeeccchhhhcCCCCCCCCCCHHHHHhhCCCCCccccccc
Q 029359 2 GGCRTLQTAVGVFGGDGESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDFKLIESE 81 (194)
Q Consensus 2 ~L~RA~qTA~ii~~~~~~~~~~~~~~~p~~~~~~~~~~~pi~~~~~LrE~~g~~~~~eG~~~~el~~~~P~~~~~~~~~~ 81 (194)
++.||+|||.. +.-. ..+.....|+|+. .+.| +|++.+|+++.||+. |..-..+
T Consensus 293 ~~~rti~ta~~-l~~~----------------------~~~~~~~~Ldei~-ag~~-~g~t~eeI~~~~p~e-~~~r~~d 346 (438)
T KOG0234|consen 293 QRKRTIQTAEG-LKLD----------------------YSVEQWKALDEID-AGVC-EGLTYEEIETNYPEE-FALRDKD 346 (438)
T ss_pred hHHHHhhhHhh-cCcc----------------------hhhhhHhhcCccc-cccc-ccccHHHHHHhCchh-hhhccCC
Confidence 47899999993 3221 1123456789973 2335 799999999999974 5432223
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCCEEEEEechHHHHHHHHHHhcCCCCCC
Q 029359 82 DDKLWKADAREPFEEVTARGMEFMKWLWTRQEKEIAVVSHGIFLQQTLNALLNDCQTSP 140 (194)
Q Consensus 82 ~~~~~~~~~gEs~~~v~~R~~~fL~~l~~~~~~~IlVVSHGg~Ir~ll~~l~~~~~~~~ 140 (194)
+ ..+..++|||+.|+..|...++-+|-.. .+|+|+||-.+||++++++++.+....
T Consensus 347 k-y~yry~~gESy~D~v~RlePvImElEr~--~~Vlvi~Hqavircll~Yf~~~~~~e~ 402 (438)
T KOG0234|consen 347 K-YRYRYPGGESYSDLVQRLEPVIMELERQ--ENVLVITHQAVIRCLLAYFLNCSPVEL 402 (438)
T ss_pred c-ceeecCCCCCHHHHHHhhhhHhHhhhhc--ccEEEEecHHHHHHHHHHHhcCCHhhc
Confidence 2 3555679999999999999998887643 339999999999999999998765544
No 28
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=98.82 E-value=1.5e-08 Score=76.79 Aligned_cols=60 Identities=27% Similarity=0.278 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcC---CCCEEEEEechHHHHHHHHHHhcCCCCCCCCCCCCCccCceEEEEEEecC
Q 029359 99 ARGMEFMKWLWTR---QEKEIAVVSHGIFLQQTLNALLNDCQTSPNQELCPRFTNCEIRSVVIVDQ 161 (194)
Q Consensus 99 ~R~~~fL~~l~~~---~~~~IlVVSHGg~Ir~ll~~l~~~~~~~~~~~~~~~~~Ncsit~i~~~~~ 161 (194)
.|+..+++.+... +.++|+|||||++|+.+++.+++.+.... +...+.+|++..+++...
T Consensus 82 ~r~~~~~~~~~~~~~~~~~~iliv~H~~~i~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~ 144 (153)
T cd07040 82 ARVLNALLELLARHLLDGKNVLIVSHGGTIRALLAALLGLSDEEI---LSLNLPNGSILVLELDEC 144 (153)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHhCcCHHHh---ccccCCCCceEEEEEcCC
Confidence 8899999888764 57899999999999999999987643332 235789999999999654
No 29
>KOG3734 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=98.53 E-value=5.7e-07 Score=75.74 Aligned_cols=109 Identities=17% Similarity=0.050 Sum_probs=76.4
Q ss_pred cchhHHHHHHHhhCCCCCCCCCCCCCCCcccccccCCCCCeeeccchhhhcCCCCCCCC-----CCHHHHHhhCCCCC--
Q 029359 2 GGCRTLQTAVGVFGGDGESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKR-----RSISEYHSLFPAID-- 74 (194)
Q Consensus 2 ~L~RA~qTA~ii~~~~~~~~~~~~~~~p~~~~~~~~~~~pi~~~~~LrE~~g~~~~~eG-----~~~~el~~~~P~~~-- 74 (194)
|-.||+|||..|....+ -+.+..+.++|+|-|-. .-+..| .+..|++...+.+|
T Consensus 99 Ps~r~VqTa~~i~~~~g-----------------~e~~~~i~vePgL~e~~--~~~~~~~~p~~is~~el~~~~~~VD~~ 159 (272)
T KOG3734|consen 99 PSLRCVQTAAKIKKGLG-----------------IEKKLKIRVEPGLFEPE--KWPKDGKFPFFISPDELKFPGFPVDLN 159 (272)
T ss_pred CchhHHHHHHHHHHhhc-----------------hhcCeeEEecchhcchh--hhcccCCCCCcCCHHHHhccCCCcccc
Confidence 45699999999988873 12346788899998862 112222 24555655544332
Q ss_pred cccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHc-CCCCEEEEEechHHHHHHHHHHhc
Q 029359 75 FKLIESEDDKLWKADAREPFEEVTARGMEFMKWLWT-RQEKEIAVVSHGIFLQQTLNALLN 134 (194)
Q Consensus 75 ~~~~~~~~~~~~~~~~gEs~~~v~~R~~~fL~~l~~-~~~~~IlVVSHGg~Ir~ll~~l~~ 134 (194)
|...+ ...+..+||.+++..|...+++.|.. .++++||||+||..+.+..+.+.+
T Consensus 160 y~P~~-----~~~~~~~es~e~~~~R~~~~~k~i~~k~~~~~lLIV~H~~sv~~~~~~l~~ 215 (272)
T KOG3734|consen 160 YDPVY-----KETPRWGESLEDCNDRIQKVFKAIADKYPNENLLIVAHGSSVDTCSAQLQG 215 (272)
T ss_pred cchhh-----hhcccccccHHHHHHHHHHHHHHHHHhcCCCceEEEeccchHHHHHHHhcC
Confidence 22211 11244799999999999999999985 677889999999999998887755
No 30
>KOG4609 consensus Predicted phosphoglycerate mutase [General function prediction only]
Probab=98.48 E-value=7.3e-07 Score=72.62 Aligned_cols=123 Identities=17% Similarity=0.118 Sum_probs=78.7
Q ss_pred chhHHHHHHHhhCCCCCCCCCCCCCCCcccccccCCCCCeeeccchhhhcCCCCCCCCCCHHHHHhhCCCCCcccccccC
Q 029359 3 GCRTLQTAVGVFGGDGESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDFKLIESED 82 (194)
Q Consensus 3 L~RA~qTA~ii~~~~~~~~~~~~~~~p~~~~~~~~~~~pi~~~~~LrE~~g~~~~~eG~~~~el~~~~P~~~~~~~~~~~ 82 (194)
|.||.+||.||+..+. + ....+-++.|+| |. ...+. |. ...|....
T Consensus 144 M~RA~ETadIIlk~l~----d---------------~lk~~s~~ll~E--Ga--P~ppd---------Pp--~k~wrp~~ 189 (284)
T KOG4609|consen 144 MVRATETADIILKHLP----D---------------DLKRVSCPLLRE--GA--PYPPD---------PP--VKHWRPLD 189 (284)
T ss_pred hhhhHHHHHHHHHhCC----C---------------ccceeccccccc--CC--CCCCC---------CC--cccCCccC
Confidence 7899999999998872 0 244566778888 32 22221 22 11222211
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHc--C----CCCEEEEEechHHHHHHHHHHhcCCCCCCCCCCCCCccCceEEEE
Q 029359 83 DKLWKADAREPFEEVTARGMEFMKWLWT--R----QEKEIAVVSHGIFLQQTLNALLNDCQTSPNQELCPRFTNCEIRSV 156 (194)
Q Consensus 83 ~~~~~~~~gEs~~~v~~R~~~fL~~l~~--~----~~~~IlVVSHGg~Ir~ll~~l~~~~~~~~~~~~~~~~~Ncsit~i 156 (194)
..++.. -.|+...++...- . .+..-+||||+-+||.++|..+..++..+ .+..+.|||+|-+
T Consensus 190 ~qy~rd---------gaRIEaafRryfhRA~p~QeedSy~liV~HaNVIRY~icRALq~PpegW---lR~nlnh~SiTWl 257 (284)
T KOG4609|consen 190 PQYYRD---------GARIEAAFRRYFHRASPSQEEDSYELIVCHANVIRYFICRALQFPPEGW---LRMNLNHCSITWL 257 (284)
T ss_pred hHhhhc---------chHHHHHHHHHHhhcCcccccccEEEEEeecchhhhhhhhhhcCCcchh---heecccCcceEEE
Confidence 112221 2677665555542 2 24578999999999999998777766543 4788999999999
Q ss_pred EEecCcccCCCCCCC
Q 029359 157 VIVDQSIRGSCYPGT 171 (194)
Q Consensus 157 ~~~~~~~~~~~~~~~ 171 (194)
.+...+-..-.+.|-
T Consensus 258 ti~PsG~vsvr~lGd 272 (284)
T KOG4609|consen 258 TISPSGHVSVRSLGD 272 (284)
T ss_pred EEccCCcEEEEeccc
Confidence 997666555555554
No 31
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=97.78 E-value=0.00026 Score=54.86 Aligned_cols=54 Identities=17% Similarity=0.118 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCCCEEEEEechHHHHHHHHHHhcCCCCCCCCCCCCCccCceEEEEEEecC
Q 029359 101 GMEFMKWLWTRQEKEIAVVSHGIFLQQTLNALLNDCQTSPNQELCPRFTNCEIRSVVIVDQ 161 (194)
Q Consensus 101 ~~~fL~~l~~~~~~~IlVVSHGg~Ir~ll~~l~~~~~~~~~~~~~~~~~Ncsit~i~~~~~ 161 (194)
+..+++.+.....++|+||+|+.+|..++..+.+... ...+..|++..++++..
T Consensus 88 ~~~~l~~~~~~~~~~vliVgH~P~i~~l~~~l~~~~~-------~~~~~~~~~~~l~~~~~ 141 (152)
T TIGR00249 88 VSDYLEALTNEGVASVLLVSHLPLVGYLVAELCPGEN-------PIMFTTGAIASLLWDES 141 (152)
T ss_pred HHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhCCCC-------CCcCcceeEEEEEEecC
Confidence 3444444443345799999999999999999876421 13688999999999643
No 32
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=97.02 E-value=0.0051 Score=47.96 Aligned_cols=53 Identities=19% Similarity=0.168 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCCCEEEEEechHHHHHHHHHHhcCCCCCCCCCCCCCccCceEEEEEEe
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGIFLQQTLNALLNDCQTSPNQELCPRFTNCEIRSVVIV 159 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg~Ir~ll~~l~~~~~~~~~~~~~~~~~Ncsit~i~~~ 159 (194)
.+..+++.+...+.++|+||+|.-+|..+...|.+... ...+.+|++..++++
T Consensus 87 ~~~~~l~~~~~~~~~~vllVgH~P~l~~l~~~L~~~~~-------~~~~~t~~i~~l~~~ 139 (159)
T PRK10848 87 LVSAYLQALANEGVASVLVISHLPLVGYLVAELCPGET-------PPMFTTSAIACVTLD 139 (159)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCcCcHHHHHHHHhCCCC-------CCCcCCceEEEEEec
Confidence 34444555544445799999999999999988875421 124789999999996
No 33
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=96.73 E-value=0.011 Score=48.13 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=19.9
Q ss_pred cCCCCEEEEEechHHHHHHHHHHh
Q 029359 110 TRQEKEIAVVSHGIFLQQTLNALL 133 (194)
Q Consensus 110 ~~~~~~IlVVSHGg~Ir~ll~~l~ 133 (194)
+.++++|+||+|+-.|..+...+.
T Consensus 148 ~~~~~tVLIVGHnp~i~~La~~~~ 171 (201)
T PRK15416 148 KSPDKNIVIFTHNHCLTYIAKDKR 171 (201)
T ss_pred hCCCCEEEEEeCchhHHHHHHHhc
Confidence 345689999999999999887654
No 34
>PRK06193 hypothetical protein; Provisional
Probab=94.18 E-value=0.085 Score=43.06 Aligned_cols=40 Identities=13% Similarity=-0.026 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCEEEEEechHHHHHHHH
Q 029359 90 AREPFEEVTARGMEFMKWLWTRQEKEIAVVSHGIFLQQTLN 130 (194)
Q Consensus 90 ~gEs~~~v~~R~~~fL~~l~~~~~~~IlVVSHGg~Ir~ll~ 130 (194)
.+|+.+...+|+..+|+.+. .+.++|+||+|+..|+.++.
T Consensus 133 ~~~~~~~y~~~l~~~I~~l~-~~~~~vLlVgHnp~i~~l~g 172 (206)
T PRK06193 133 PAERNALLKAGLRPLLTTPP-DPGTNTVLVGHDDNLEAATG 172 (206)
T ss_pred ChhhHHHHHHHHHHHHhhCC-CCCCeEEEEeCchHHHHHhC
Confidence 45788888899999999886 45689999999999999875
No 35
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=70.99 E-value=14 Score=31.81 Aligned_cols=42 Identities=19% Similarity=0.140 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEechHHHHHHHHHHhcCC
Q 029359 95 EEVTARGMEFMKWLWTRQEKEIAVVSHGIFLQQTLNALLNDC 136 (194)
Q Consensus 95 ~~v~~R~~~fL~~l~~~~~~~IlVVSHGg~Ir~ll~~l~~~~ 136 (194)
+.+.+|+...+..+.+++.++|+||+||.--..++.++....
T Consensus 174 ~~~~ari~Aa~~~~~~~~~~~ivlIg~G~gA~~~~~~la~~~ 215 (310)
T PF12048_consen 174 ERLFARIEAAIAFAQQQGGKNIVLIGHGTGAGWAARYLAEKP 215 (310)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHhcCC
Confidence 467778888888777888889999999999888888776554
No 36
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=69.97 E-value=4.5 Score=32.30 Aligned_cols=30 Identities=27% Similarity=0.190 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHHHHc-CCCCEEEEEech
Q 029359 93 PFEEVTARGMEFMKWLWT-RQEKEIAVVSHG 122 (194)
Q Consensus 93 s~~~v~~R~~~fL~~l~~-~~~~~IlVVSHG 122 (194)
+.+++.+|+..|++.|.+ +|+.-|++|+|-
T Consensus 72 ~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~ 102 (178)
T PF14606_consen 72 SPEEFRERLDGFVKTIREAHPDTPILLVSPI 102 (178)
T ss_dssp CTTTHHHHHHHHHHHHHTT-SSS-EEEEE--
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCEEEEecC
Confidence 456899999999999996 789999999964
No 37
>PRK06193 hypothetical protein; Provisional
Probab=68.81 E-value=3.2 Score=33.82 Aligned_cols=16 Identities=38% Similarity=0.507 Sum_probs=13.9
Q ss_pred cchhHHHHHHHhhCCC
Q 029359 2 GGCRTLQTAVGVFGGD 17 (194)
Q Consensus 2 ~L~RA~qTA~ii~~~~ 17 (194)
|+.||+|||+++++..
T Consensus 103 pl~Ra~qTA~il~~~~ 118 (206)
T PRK06193 103 PYCRAWETAQLAFGRH 118 (206)
T ss_pred CcHHHHHHHHHHhccc
Confidence 7899999999998653
No 38
>PRK00865 glutamate racemase; Provisional
Probab=68.64 E-value=33 Score=28.64 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=48.3
Q ss_pred CHHHHHhhCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCCEEEEEechHH---HHHHHH
Q 029359 62 SISEYHSLFPAIDFKLIESEDDKLWKADAREPFEEVTARGMEFMKWLWTRQEKEIAVVSHGIF---LQQTLN 130 (194)
Q Consensus 62 ~~~el~~~~P~~~~~~~~~~~~~~~~~~~gEs~~~v~~R~~~fL~~l~~~~~~~IlVVSHGg~---Ir~ll~ 130 (194)
-..++++.+|+.+|- ++. |....|-|.-|.+++.+|+.+.++++.+..-+-|+|-|.... +..+..
T Consensus 20 vl~~i~~~lp~~~~i-Y~~--D~~~~PYG~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~~~~l~~lr~ 88 (261)
T PRK00865 20 VLREIRRLLPDEHII-YVG--DTARFPYGEKSEEEIRERTLEIVEFLLEYGVKMLVIACNTASAVALPDLRE 88 (261)
T ss_pred HHHHHHHHCCCCCEE-EEe--cCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHHHHHHHHHH
Confidence 368899999987654 332 334445577899999999999999998766688888887753 455443
No 39
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=61.72 E-value=4.3 Score=31.92 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=33.5
Q ss_pred CCEEEEEechHHHHHHHHHHhcCCCCCCCCCCCCCccCceEEEEEEecC
Q 029359 113 EKEIAVVSHGIFLQQTLNALLNDCQTSPNQELCPRFTNCEIRSVVIVDQ 161 (194)
Q Consensus 113 ~~~IlVVSHGg~Ir~ll~~l~~~~~~~~~~~~~~~~~Ncsit~i~~~~~ 161 (194)
-.+|+||+|-=.+-.+...+.+. .. ....|.-.++..++++..
T Consensus 101 v~~vllVgH~P~l~~l~~~L~~~--~~----~~~~fptsgia~l~~~~~ 143 (163)
T COG2062 101 VGSVLLVGHNPLLEELALLLAGG--AR----LPVKFPTSGIAVLEFDGK 143 (163)
T ss_pred CceEEEECCCccHHHHHHHHccc--cc----cccCCCcccEEEEEeccc
Confidence 47899999999999998887654 11 134688899999999754
No 40
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=58.27 E-value=7.5 Score=28.37 Aligned_cols=31 Identities=29% Similarity=0.296 Sum_probs=25.8
Q ss_pred CCeeeccchhhh-cCCCCCCCCCCHHHHHhhC
Q 029359 40 PPIIAVELCRER-LGVHPCDKRRSISEYHSLF 70 (194)
Q Consensus 40 ~pi~~~~~LrE~-~g~~~~~eG~~~~el~~~~ 70 (194)
..|-.+++.||+ +|.|+||.|....-|-+.|
T Consensus 63 ~kI~~~Dd~r~RDLgTHPcwnG~nRk~Lvk~~ 94 (121)
T PF06919_consen 63 FKIGLDDDHRERDLGTHPCWNGVNRKLLVKTY 94 (121)
T ss_pred EEEEecCchhhcccCCCcCccCcchhhHHHHH
Confidence 345678899999 8999999999888887765
No 41
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=55.30 E-value=19 Score=27.02 Aligned_cols=39 Identities=15% Similarity=0.114 Sum_probs=24.1
Q ss_pred EEEEEech-HHHHHHHHHHhcCCCCCCCCCCCCCccCceEEEEEEecCcccC
Q 029359 115 EIAVVSHG-IFLQQTLNALLNDCQTSPNQELCPRFTNCEIRSVVIVDQSIRG 165 (194)
Q Consensus 115 ~IlVVSHG-g~Ir~ll~~l~~~~~~~~~~~~~~~~~Ncsit~i~~~~~~~~~ 165 (194)
-|+||||| .+-..++..+... . +++.+..+.+.++...|
T Consensus 3 GIVlVSHs~~lA~gl~~~~~~i-----------~-~~~~i~~~gg~~d~~~g 42 (124)
T PRK14484 3 GIVIVSHSKKIAEGVKDLIKQM-----------A-PDVPIIYAGGTEDGRIG 42 (124)
T ss_pred eEEEEeCcHHHHHHHHHHHHHh-----------h-CCCCEEEecCCCCCCcc
Confidence 48999999 6666665544321 2 56666666665554444
No 42
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=49.78 E-value=27 Score=29.39 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEechH
Q 029359 95 EEVTARGMEFMKWLWTRQEKEIAVVSHGI 123 (194)
Q Consensus 95 ~~v~~R~~~fL~~l~~~~~~~IlVVSHGg 123 (194)
..+++++..-++++.+. +++|++|||..
T Consensus 180 ~~F~~K~~~rl~e~~~~-~~tiv~VSHd~ 207 (249)
T COG1134 180 AAFQEKCLERLNELVEK-NKTIVLVSHDL 207 (249)
T ss_pred HHHHHHHHHHHHHHHHc-CCEEEEEECCH
Confidence 46788888888887654 38999999985
No 43
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=48.75 E-value=16 Score=26.33 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=15.7
Q ss_pred EEEEEechHHHHHHHHHHh
Q 029359 115 EIAVVSHGIFLQQTLNALL 133 (194)
Q Consensus 115 ~IlVVSHGg~Ir~ll~~l~ 133 (194)
.|+|+|||.+-..+...+.
T Consensus 1 giii~sHG~~A~g~~~~~~ 19 (116)
T PF03610_consen 1 GIIIASHGSLAEGLLESAE 19 (116)
T ss_dssp EEEEEEETTHHHHHHHHHH
T ss_pred CEEEEECcHHHHHHHHHHH
Confidence 4899999999888887653
No 44
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=48.35 E-value=1.3e+02 Score=25.09 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=44.1
Q ss_pred HHHHHhhCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHH-cCCCCEEEEEechHH
Q 029359 63 ISEYHSLFPAIDFKLIESEDDKLWKADAREPFEEVTARGMEFMKWLW-TRQEKEIAVVSHGIF 124 (194)
Q Consensus 63 ~~el~~~~P~~~~~~~~~~~~~~~~~~~gEs~~~v~~R~~~fL~~l~-~~~~~~IlVVSHGg~ 124 (194)
..+|++..|+.+|- ++. |..+.|-|.-|.+++..++.+.++++. +..-+-|+|-|.-+.
T Consensus 14 ~~~l~~~~p~~~~i-y~~--D~~~~PYG~ks~~~i~~~~~~~~~~L~~~~g~d~ivIaCNTA~ 73 (251)
T TIGR00067 14 LKEIRKQLPKEHYI-YVG--DTKRFPYGEKSPEFILEYVLELLTFLKERHNIKLLVVACNTAS 73 (251)
T ss_pred HHHHHHHCCCCCEE-EEe--cCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEeCchHH
Confidence 67888999986654 332 334555577899999999999999998 666678888776543
No 45
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=48.25 E-value=26 Score=33.29 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEechH
Q 029359 90 AREPFEEVTARGMEFMKWLWTR-QEKEIAVVSHGI 123 (194)
Q Consensus 90 ~gEs~~~v~~R~~~fL~~l~~~-~~~~IlVVSHGg 123 (194)
.-|...+...|.+..++.+.+. .+++|+||+|+.
T Consensus 188 ~le~rd~YF~rLK~lIE~ay~~nggkKVVLV~HSM 222 (642)
T PLN02517 188 NTEVRDQTLSRLKSNIELMVATNGGKKVVVVPHSM 222 (642)
T ss_pred chhhhhHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 4677888999999999988754 468999999975
No 46
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=45.55 E-value=24 Score=25.78 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=15.5
Q ss_pred EEEEEechHHHHHHHHHHh
Q 029359 115 EIAVVSHGIFLQQTLNALL 133 (194)
Q Consensus 115 ~IlVVSHGg~Ir~ll~~l~ 133 (194)
.|+|||||.+-..+...+.
T Consensus 2 ~ili~sHG~~A~gi~~~~~ 20 (122)
T cd00006 2 GIIIATHGGFASGLLNSAE 20 (122)
T ss_pred eEEEEcCHHHHHHHHHHHH
Confidence 5899999988888877653
No 47
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=44.99 E-value=26 Score=25.58 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=16.3
Q ss_pred EEEEEechHHHHHHHHHHh
Q 029359 115 EIAVVSHGIFLQQTLNALL 133 (194)
Q Consensus 115 ~IlVVSHGg~Ir~ll~~l~ 133 (194)
.|+|+|||.+-..++..+.
T Consensus 3 ~ili~sHG~~A~gl~~s~~ 21 (116)
T TIGR00824 3 AIIISGHGQAAIALLKSAE 21 (116)
T ss_pred EEEEEecHHHHHHHHHHHH
Confidence 5999999999999887654
No 48
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=43.02 E-value=41 Score=27.88 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCCCCEEEEEechHHHHHH
Q 029359 101 GMEFMKWLWTRQEKEIAVVSHGIFLQQT 128 (194)
Q Consensus 101 ~~~fL~~l~~~~~~~IlVVSHGg~Ir~l 128 (194)
+...|..+.+..+++|++|||.-.+...
T Consensus 181 V~~ll~~~~~~~g~tii~VTHd~~lA~~ 208 (226)
T COG1136 181 VLELLRELNKERGKTIIMVTHDPELAKY 208 (226)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCHHHHHh
Confidence 4444555544456799999999988764
No 49
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=41.83 E-value=18 Score=30.75 Aligned_cols=39 Identities=21% Similarity=0.188 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCEEEEEechHHHHHHH
Q 029359 90 AREPFEEVTARGMEFMKWLWTRQEKEIAVVSHGIFLQQTL 129 (194)
Q Consensus 90 ~gEs~~~v~~R~~~fL~~l~~~~~~~IlVVSHGg~Ir~ll 129 (194)
.+.|.++..+|+++.++...+ -...|++.||||.|..--
T Consensus 190 ~~~sl~~a~~~~~~i~~aa~~-v~~dii~l~hGGPI~~p~ 228 (268)
T PF09370_consen 190 TALSLEEAAERIQEIFDAARA-VNPDIIVLCHGGPIATPE 228 (268)
T ss_dssp -S--HHHHHHHHHHHHHHHHC-C-TT-EEEEECTTB-SHH
T ss_pred ccCCHHHHHHHHHHHHHHHHH-hCCCeEEEEeCCCCCCHH
Confidence 468999999999998887765 245689999999987643
No 50
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=41.26 E-value=34 Score=30.36 Aligned_cols=31 Identities=10% Similarity=0.303 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCEEEEEechH
Q 029359 93 PFEEVTARGMEFMKWLWTRQEKEIAVVSHGI 123 (194)
Q Consensus 93 s~~~v~~R~~~fL~~l~~~~~~~IlVVSHGg 123 (194)
...+...+.+..++.+.+..+++|+||+|+.
T Consensus 98 ~~~~~~~~lk~~ie~~~~~~~~kv~li~HSm 128 (389)
T PF02450_consen 98 ERDEYFTKLKQLIEEAYKKNGKKVVLIAHSM 128 (389)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCcEEEEEeCC
Confidence 5567788888888888765589999999964
No 51
>COG3412 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.88 E-value=31 Score=26.06 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=26.7
Q ss_pred EEEEEechHHHHHHHHHHhcCCCCCCCCCCCCCccCceEEEEEEecCcccCCC
Q 029359 115 EIAVVSHGIFLQQTLNALLNDCQTSPNQELCPRFTNCEIRSVVIVDQSIRGSC 167 (194)
Q Consensus 115 ~IlVVSHGg~Ir~ll~~l~~~~~~~~~~~~~~~~~Ncsit~i~~~~~~~~~~~ 167 (194)
.|+||||+--|..-+..+... ..++++++..-=.+++.+|.+
T Consensus 4 giVIVSHS~~lAeGv~~li~e-----------m~~dv~i~~~gGtddg~iGTs 45 (129)
T COG3412 4 GIVIVSHSKELAEGVAELIRE-----------MAGDVPITYAGGTDDGQIGTS 45 (129)
T ss_pred eEEEEeCCHHHHHHHHHHHHH-----------HhCCCceEEecCCCCCCcCcC
Confidence 589999998887777665432 223666666555555555553
No 52
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=40.28 E-value=33 Score=29.23 Aligned_cols=31 Identities=23% Similarity=0.158 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEEechHHHHH
Q 029359 96 EVTARGMEFMKWLWTRQEKEIAVVSHGIFLQQ 127 (194)
Q Consensus 96 ~v~~R~~~fL~~l~~~~~~~IlVVSHGg~Ir~ 127 (194)
+...++...+..|.. .+..|++||||++--.
T Consensus 31 ~~l~~l~~~i~~l~~-~g~~vilVssGAv~~G 61 (284)
T cd04256 31 GRLASIVEQVSELQS-QGREVILVTSGAVAFG 61 (284)
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEeeCcHHhC
Confidence 444555555555543 3688999999987644
No 53
>PRK04946 hypothetical protein; Provisional
Probab=39.84 E-value=1.1e+02 Score=24.47 Aligned_cols=45 Identities=16% Similarity=0.006 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCEEEEEech---HHHHHHHHHHhcC
Q 029359 90 AREPFEEVTARGMEFMKWLWTRQEKEIAVVSHG---IFLQQTLNALLND 135 (194)
Q Consensus 90 ~gEs~~~v~~R~~~fL~~l~~~~~~~IlVVSHG---g~Ir~ll~~l~~~ 135 (194)
.|-+.++....+..||...... +.+.+.|-|| ++|+..+..++..
T Consensus 101 hG~~~eeA~~~L~~fl~~a~~~-g~r~v~IIHGkG~gvLk~~V~~wL~q 148 (181)
T PRK04946 101 HGLTQLQAKQELGALIAACRKE-HVFCACVMHGHGKHILKQQTPLWLAQ 148 (181)
T ss_pred CCCCHHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCHhHHHHHHHHHHcC
Confidence 6899999999999999987764 3445566798 9999999887754
No 54
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=39.20 E-value=1.1e+02 Score=23.98 Aligned_cols=16 Identities=31% Similarity=-0.037 Sum_probs=12.4
Q ss_pred cchhHHHHHHHhhCCC
Q 029359 2 GGCRTLQTAVGVFGGD 17 (194)
Q Consensus 2 ~L~RA~qTA~ii~~~~ 17 (194)
|..||.|||+++....
T Consensus 55 pa~Ra~QTae~v~~~~ 70 (163)
T COG2062 55 PAVRARQTAEIVAEHL 70 (163)
T ss_pred hhHHHHHHHHHHHHhh
Confidence 5678888888887665
No 55
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=38.54 E-value=42 Score=28.32 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=13.8
Q ss_pred HHHHHHcCCCCEEEEEechHH
Q 029359 104 FMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 104 fL~~l~~~~~~~IlVVSHGg~ 124 (194)
.|+++.+. +.+|++|||.--
T Consensus 181 lL~~l~~e-g~tIl~vtHDL~ 200 (254)
T COG1121 181 LLKELRQE-GKTVLMVTHDLG 200 (254)
T ss_pred HHHHHHHC-CCEEEEEeCCcH
Confidence 34444444 889999999843
No 56
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=38.02 E-value=60 Score=24.17 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=12.0
Q ss_pred EEEEEechH-HHHHHHHH
Q 029359 115 EIAVVSHGI-FLQQTLNA 131 (194)
Q Consensus 115 ~IlVVSHGg-~Ir~ll~~ 131 (194)
.|+|||||. +-+.+...
T Consensus 2 gIvivSHs~~lA~Gi~~~ 19 (125)
T TIGR02364 2 GIVLVSHSKKIAEGIKEL 19 (125)
T ss_pred cEEEEeCCHHHHHHHHHH
Confidence 489999996 55555543
No 57
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=37.66 E-value=39 Score=28.46 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=24.7
Q ss_pred CCHHHHHHH----HHHHHHHHHcCCCCEEEEEechHHHHHHH
Q 029359 92 EPFEEVTAR----GMEFMKWLWTRQEKEIAVVSHGIFLQQTL 129 (194)
Q Consensus 92 Es~~~v~~R----~~~fL~~l~~~~~~~IlVVSHGg~Ir~ll 129 (194)
|.|.++..= .+..|..|.+...++|++|||..-=-.++
T Consensus 156 EPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~L 197 (248)
T COG1116 156 EPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYL 197 (248)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhh
Confidence 556654433 34455556666779999999997654444
No 58
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=36.46 E-value=1.6e+02 Score=21.10 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHc-CCCCEEEEEec--hHHHHHHHHHHhcCCCCCCCCCCCCCccCceEEEEEEecC
Q 029359 96 EVTARGMEFMKWLWT-RQEKEIAVVSH--GIFLQQTLNALLNDCQTSPNQELCPRFTNCEIRSVVIVDQ 161 (194)
Q Consensus 96 ~v~~R~~~fL~~l~~-~~~~~IlVVSH--Gg~Ir~ll~~l~~~~~~~~~~~~~~~~~Ncsit~i~~~~~ 161 (194)
.+..++...++.+.+ ++..+|+|+.| ||.+-.++...+.... ......++.+.|...
T Consensus 45 ~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~l~~~~---------~~~~~~~~~~~fg~P 104 (140)
T PF01764_consen 45 SLYDQILDALKELVEKYPDYSIVITGHSLGGALASLAAADLASHG---------PSSSSNVKCYTFGAP 104 (140)
T ss_dssp HHHHHHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHHHHCT---------TTSTTTEEEEEES-S
T ss_pred HHHHHHHHHHHHHHhcccCccchhhccchHHHHHHHHHHhhhhcc---------cccccceeeeecCCc
Confidence 444555565666553 56789999999 5788777776553311 111455677776433
No 59
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=36.27 E-value=66 Score=24.90 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=30.0
Q ss_pred CCC-CCHHHHH--HHHHHHHHHHHcCCCCEEEEEechHHHHHHHH-HHhc
Q 029359 89 DAR-EPFEEVT--ARGMEFMKWLWTRQEKEIAVVSHGIFLQQTLN-ALLN 134 (194)
Q Consensus 89 ~~g-Es~~~v~--~R~~~fL~~l~~~~~~~IlVVSHGg~Ir~ll~-~l~~ 134 (194)
||| -.-..+. .++.++++++.+. ++.|.-||||..+-+-.. .+.+
T Consensus 73 pGG~~~~~~~~~~~~~~~~v~~~~~~-~k~vaaIC~g~~~L~~ag~ll~g 121 (188)
T COG0693 73 PGGDHGPEYLRPDPDLLAFVRDFYAN-GKPVAAICHGPAVLAAAGLLLKG 121 (188)
T ss_pred CCCccchhhccCcHHHHHHHHHHHHc-CCEEEEEChhHHHHhccccccCC
Confidence 455 4444433 5677777776654 899999999998866555 4443
No 60
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=35.50 E-value=45 Score=27.68 Aligned_cols=39 Identities=26% Similarity=0.439 Sum_probs=27.6
Q ss_pred CCHHHH----HHHHHHHHHHHHcCCCCEEEEEechHHHHHHHH
Q 029359 92 EPFEEV----TARGMEFMKWLWTRQEKEIAVVSHGIFLQQTLN 130 (194)
Q Consensus 92 Es~~~v----~~R~~~fL~~l~~~~~~~IlVVSHGg~Ir~ll~ 130 (194)
|.+..+ ++|++..|-++.+..++.+++|||+.==..+++
T Consensus 158 EPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlfla 200 (259)
T COG4525 158 EPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLA 200 (259)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhh
Confidence 556553 456667777777778899999999976554443
No 61
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.75 E-value=1e+02 Score=29.41 Aligned_cols=121 Identities=13% Similarity=0.056 Sum_probs=64.7
Q ss_pred ccchhhhcCCCCCCCCCCHHHHHhhCCCC-----CcccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHcC---CCCEE
Q 029359 45 VELCRERLGVHPCDKRRSISEYHSLFPAI-----DFKLIESEDDKLWKADAREPFEEVTARGMEFMKWLWTR---QEKEI 116 (194)
Q Consensus 45 ~~~LrE~~g~~~~~eG~~~~el~~~~P~~-----~~~~~~~~~~~~~~~~~gEs~~~v~~R~~~fL~~l~~~---~~~~I 116 (194)
++..-| + ..|| +.+.|...||.. +|.....++..+| |--+....+..|...+++.|.+. .+.-|
T Consensus 457 den~~e-y--S~CW---PkdWLp~D~p~~Rii~l~Y~Tsit~w~~~~--p~e~~r~sl~~Rs~~lleql~~~~VG~~RPi 528 (697)
T KOG2029|consen 457 DENKAE-Y--SVCW---PKDWLPDDYPKSRIIGLEYTTSITDWRARC--PAEAHRRSLAARSNELLEQLQAAGVGDDRPI 528 (697)
T ss_pred Cccchh-h--cccC---CcccccccCccceEEEeecccchhhhcccC--cccchhhHHHHHHHHHHHHHHHhccCCCCce
Confidence 455444 4 3588 445577778852 2222111221222 34567889999999999999863 35679
Q ss_pred EEEechH---HHHHHHHHHhcCCCCCCCCCCCCCccCceEEEEEE--ecCcccCCCCCCCCCCCCCC
Q 029359 117 AVVSHGI---FLQQTLNALLNDCQTSPNQELCPRFTNCEIRSVVI--VDQSIRGSCYPGTISGELRL 178 (194)
Q Consensus 117 lVVSHGg---~Ir~ll~~l~~~~~~~~~~~~~~~~~Ncsit~i~~--~~~~~~~~~~~~~~~~~~~~ 178 (194)
+.|+|+. +++.++-....-..+.+ ....+||--.+|-. ..++..+ .|.......|-|
T Consensus 529 vwI~HSmGGLl~K~lLlda~~S~kP~m----s~l~kNtrGiiFls~PHrGS~lA-~~k~~~~~llsP 590 (697)
T KOG2029|consen 529 VWIGHSMGGLLAKKLLLDAYCSSKPDM----SNLNKNTRGIIFLSVPHRGSRLA-GWKNESSSLLSP 590 (697)
T ss_pred EEEecccchHHHHHHHHHHhhcCCchh----hhhhccCCceEEEecCCCCCccc-cccccchhhcCc
Confidence 9999953 44444432211111111 23467876533333 2232222 566666655543
No 62
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=34.73 E-value=61 Score=25.13 Aligned_cols=24 Identities=8% Similarity=0.291 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEech
Q 029359 98 TARGMEFMKWLWTRQEKEIAVVSHG 122 (194)
Q Consensus 98 ~~R~~~fL~~l~~~~~~~IlVVSHG 122 (194)
.+++.++|+++.+ .+..|++|||-
T Consensus 163 ~~~~~~~l~~~~~-~~~tili~sH~ 186 (190)
T TIGR01166 163 REQMLAILRRLRA-EGMTVVISTHD 186 (190)
T ss_pred HHHHHHHHHHHHH-cCCEEEEEeec
Confidence 3445555555543 36799999995
No 63
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=34.38 E-value=94 Score=22.60 Aligned_cols=38 Identities=8% Similarity=0.038 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCEEEEEechHHHHHHH
Q 029359 91 REPFEEVTARGMEFMKWLWTRQEKEIAVVSHGIFLQQTL 129 (194)
Q Consensus 91 gEs~~~v~~R~~~fL~~l~~~~~~~IlVVSHGg~Ir~ll 129 (194)
.+...+....+.+|++.... .++.|+|-|++|.-|+-.
T Consensus 57 ~~~~~~~~~~~~~~i~~~~~-~~~~VlVHC~~G~~RS~~ 94 (138)
T smart00195 57 ETKISPYFPEAVEFIEDAEK-KGGKVLVHCQAGVSRSAT 94 (138)
T ss_pred CCChHHHHHHHHHHHHHHhc-CCCeEEEECCCCCchHHH
Confidence 55677778888888888764 467899999998766543
No 64
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=33.72 E-value=61 Score=25.64 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
+++.+.|.++.+..+..|++|||---.
T Consensus 177 ~~l~~~l~~~~~~~~~tii~~sH~~~~ 203 (218)
T cd03255 177 KEVMELLRELNKEAGTTIVVVTHDPEL 203 (218)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 344455555543346789999998643
No 65
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.12 E-value=68 Score=24.70 Aligned_cols=26 Identities=15% Similarity=0.163 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
.++.+.|.++.+..+..|++|||-.-
T Consensus 137 ~~l~~~l~~~~~~~~~tiii~sH~~~ 162 (178)
T cd03229 137 REVRALLKSLQAQLGITVVLVTHDLD 162 (178)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 44555555555433579999999854
No 66
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.86 E-value=63 Score=25.69 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=16.1
Q ss_pred HHHHHHHHHHcCCCCEEEEEechHH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
.+.++|.++.+..+..|++|||---
T Consensus 169 ~~~~~l~~~~~~~~~tiii~sH~~~ 193 (220)
T cd03293 169 QLQEELLDIWRETGKTVLLVTHDID 193 (220)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCHH
Confidence 3444555544334679999999865
No 67
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=32.78 E-value=46 Score=25.49 Aligned_cols=19 Identities=37% Similarity=0.572 Sum_probs=16.4
Q ss_pred EEEEEechHHHHHHHHHHh
Q 029359 115 EIAVVSHGIFLQQTLNALL 133 (194)
Q Consensus 115 ~IlVVSHGg~Ir~ll~~l~ 133 (194)
.|+|+|||.+-..++..+.
T Consensus 3 ~iii~tHG~~A~~l~~s~e 21 (143)
T COG2893 3 GIIIATHGRFAEGLLNSLE 21 (143)
T ss_pred eEEEEeCHHHHHHHHHHHH
Confidence 5899999999999987654
No 68
>PRK09191 two-component response regulator; Provisional
Probab=32.29 E-value=1.6e+02 Score=23.48 Aligned_cols=43 Identities=9% Similarity=0.010 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCEEEEEechHHHHHHHHHHh
Q 029359 91 REPFEEVTARGMEFMKWLWTRQEKEIAVVSHGIFLQQTLNALL 133 (194)
Q Consensus 91 gEs~~~v~~R~~~fL~~l~~~~~~~IlVVSHGg~Ir~ll~~l~ 133 (194)
|.|...+..|..++++.+...-..+|+||......+..+...+
T Consensus 115 ~~s~~tV~~~l~ra~~~l~~~~~~~~liidd~~~~~~~l~~~L 157 (261)
T PRK09191 115 GVDPAEAEALLDDARAEIARQVATRVLIIEDEPIIAMDLEQLV 157 (261)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCeEEEEcCcHHHHHHHHHHH
Confidence 5677888999999999888766778999999888877776554
No 69
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=32.16 E-value=66 Score=26.50 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=17.3
Q ss_pred HHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
++...|.++.+..+..|++|||---.
T Consensus 153 ~l~~~l~~~~~~~~~tiiivsHd~~~ 178 (246)
T cd03237 153 MASKVIRRFAENNEKTAFVVEHDIIM 178 (246)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 34455555554446899999999653
No 70
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=32.15 E-value=74 Score=25.91 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHc------CCCCEEEEEech
Q 029359 90 AREPFEEVTARGMEFMKWLWT------RQEKEIAVVSHG 122 (194)
Q Consensus 90 ~gEs~~~v~~R~~~fL~~l~~------~~~~~IlVVSHG 122 (194)
.|....+-.+-+...++.|.+ .+.++|++|+|+
T Consensus 55 ~g~~l~~q~~~~~~~i~~i~~~~~~~~~~~~~vilVgHS 93 (225)
T PF07819_consen 55 HGRTLQRQAEFLAEAIKYILELYKSNRPPPRSVILVGHS 93 (225)
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhhccCCCCceEEEEEc
Confidence 466666555555555555542 356899999995
No 71
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=32.12 E-value=53 Score=30.19 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCCEEEEEechHHH
Q 029359 90 AREPFEEVTARGMEFMKWLWT-RQEKEIAVVSHGIFL 125 (194)
Q Consensus 90 ~gEs~~~v~~R~~~fL~~l~~-~~~~~IlVVSHGg~I 125 (194)
.-|-.++...+.+..++...+ +.+++|+||+|+.=-
T Consensus 157 ~~e~rd~yl~kLK~~iE~~~~~~G~kkVvlisHSMG~ 193 (473)
T KOG2369|consen 157 NSEERDQYLSKLKKKIETMYKLNGGKKVVLISHSMGG 193 (473)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCcc
Confidence 356667777778888877765 445999999998533
No 72
>KOG2728 consensus Uncharacterized conserved protein with similarity to phosphopantothenoylcysteine synthetase/decarboxylase [General function prediction only]
Probab=31.89 E-value=44 Score=28.39 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCEEEEEechHHHHHH
Q 029359 90 AREPFEEVTARGMEFMKWLWTRQEKEIAVVSHGIFLQQT 128 (194)
Q Consensus 90 ~gEs~~~v~~R~~~fL~~l~~~~~~~IlVVSHGg~Ir~l 128 (194)
-.|+.++...=+..|++.-.+..+.+|++||-||+.--|
T Consensus 7 ~p~~~~d~~s~~~eFi~~q~s~~~rrIVlVTSGGTtVPL 45 (302)
T KOG2728|consen 7 VPESLDDPGSLIEEFIKLQASLQGRRIVLVTSGGTTVPL 45 (302)
T ss_pred CcccccchhHHHHHHHHHHhhccCceEEEEecCCeEeec
Confidence 356666666667777766555566789999999986443
No 73
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=30.82 E-value=60 Score=28.15 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEEechHH
Q 029359 97 VTARGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 97 v~~R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
.+.|++.|+++..+..+.+|+..||-.-
T Consensus 191 aq~~ir~Flke~n~~~~aTVllTTH~~~ 218 (325)
T COG4586 191 AQANIREFLKEYNEERQATVLLTTHIFD 218 (325)
T ss_pred HHHHHHHHHHHHHHhhCceEEEEecchh
Confidence 5678889999998877889999999654
No 74
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.68 E-value=72 Score=25.17 Aligned_cols=27 Identities=19% Similarity=-0.058 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEechHH
Q 029359 98 TARGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 98 ~~R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
..++.+.|.++.+..+..|++|||---
T Consensus 166 ~~~l~~~l~~~~~~~~~tii~~sH~~~ 192 (213)
T cd03259 166 REELREELKELQRELGITTIYVTHDQE 192 (213)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 344445555554434678999999864
No 75
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=30.65 E-value=79 Score=25.58 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
+.+.+.|..+.+..+..|++|||-.-
T Consensus 190 ~~l~~~l~~~~~~~~~tiiivsH~~~ 215 (236)
T cd03267 190 ENIRNFLKEYNRERGTTVLLTSHYMK 215 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCHH
Confidence 33444555544434679999999965
No 76
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.60 E-value=71 Score=25.80 Aligned_cols=26 Identities=12% Similarity=0.095 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
+++.+.|.++.+..+.+|++|||.--
T Consensus 173 ~~l~~~l~~~~~~~~~tvii~sH~~~ 198 (239)
T cd03296 173 KELRRWLRRLHDELHVTTVFVTHDQE 198 (239)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 33444555554433679999999864
No 77
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.47 E-value=71 Score=25.69 Aligned_cols=24 Identities=13% Similarity=0.055 Sum_probs=15.3
Q ss_pred HHHHHHHHHcCCCCEEEEEechHH
Q 029359 101 GMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 101 ~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
+.+.|+++.+..+..|++|||-.-
T Consensus 175 l~~~l~~~~~~~~~tvi~vsH~~~ 198 (235)
T cd03261 175 IDDLIRSLKKELGLTSIMVTHDLD 198 (235)
T ss_pred HHHHHHHHHHhcCcEEEEEecCHH
Confidence 344454444333679999999864
No 78
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=30.12 E-value=1.2e+02 Score=24.83 Aligned_cols=43 Identities=23% Similarity=0.159 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHHHHHcC-CCCEEEEEechHHHHHHHHHHh
Q 029359 91 REPFEEVTARGMEFMKWLWTR-QEKEIAVVSHGIFLQQTLNALL 133 (194)
Q Consensus 91 gEs~~~v~~R~~~fL~~l~~~-~~~~IlVVSHGg~Ir~ll~~l~ 133 (194)
.++.........+||+.|... +.++|-|++|+.=-+.++..|.
T Consensus 69 ~~~a~~s~~~l~~~L~~L~~~~~~~~I~ilaHSMG~rv~~~aL~ 112 (233)
T PF05990_consen 69 RESARFSGPALARFLRDLARAPGIKRIHILAHSMGNRVLLEALR 112 (233)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCceEEEEEeCchHHHHHHHHH
Confidence 455666666677888888875 6799999999987777766554
No 79
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=29.60 E-value=71 Score=26.44 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCCCEEEEEechHHHHH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGIFLQQ 127 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg~Ir~ 127 (194)
.+.+++.++....+++|++|||..-.-.
T Consensus 176 ~l~~~l~~L~~~~~~tii~~tHd~~~~~ 203 (235)
T COG1122 176 ELLELLKKLKEEGGKTIIIVTHDLELVL 203 (235)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCcHHHHH
Confidence 3445556665555679999999876544
No 80
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=29.35 E-value=1e+02 Score=24.22 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
+.+..++..+.+.....|++|||---.
T Consensus 108 ~~l~~~l~~~~~~~~~tiiivsH~~~~ 134 (177)
T cd03222 108 LNAARAIRRLSEEGKKTALVVEHDLAV 134 (177)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence 344455555544334789999998643
No 81
>COG1416 Uncharacterized conserved protein [Function unknown]
Probab=29.22 E-value=1.2e+02 Score=22.42 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHc----CCCCEEEEEechHHHHHHHHH
Q 029359 98 TARGMEFMKWLWT----RQEKEIAVVSHGIFLQQTLNA 131 (194)
Q Consensus 98 ~~R~~~fL~~l~~----~~~~~IlVVSHGg~Ir~ll~~ 131 (194)
.+|+...|..+.. .+...|.||.||..|+.+...
T Consensus 13 ~~k~~~~l~Nl~Nll~~~p~~~IeVV~~g~ai~~l~~~ 50 (112)
T COG1416 13 ESKVNMVLGNLTNLLEDDPSVEIEVVAHGPAIAFLSEK 50 (112)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEeCchhHHhhhh
Confidence 4566666666543 356789999999999998753
No 82
>PF13479 AAA_24: AAA domain
Probab=28.77 E-value=82 Score=25.22 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCEEEEEechHHHHH
Q 029359 91 REPFEEVTARGMEFMKWLWTRQEKEIAVVSHGIFLQQ 127 (194)
Q Consensus 91 gEs~~~v~~R~~~fL~~l~~~~~~~IlVVSHGg~Ir~ 127 (194)
+--+..+..+..++++.+....+.+|++++|...-..
T Consensus 105 ~~~yg~~~~~~~~~i~~l~~~~~~~VI~tah~~~~~~ 141 (213)
T PF13479_consen 105 GKGYGELQQEFMRFIDKLLNALGKNVIFTAHAKEEED 141 (213)
T ss_pred cchHHHHHHHHHHHHHHHHHHCCCcEEEEEEEEEEEc
Confidence 4457788889999999877656899999999876555
No 83
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=28.57 E-value=79 Score=25.46 Aligned_cols=25 Identities=12% Similarity=0.229 Sum_probs=15.6
Q ss_pred HHHHHHHHHHcCCCCEEEEEechHH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
.+.+.|..+.+..+..|++|||.--
T Consensus 183 ~l~~~l~~~~~~~~~tiii~tH~~~ 207 (243)
T TIGR02315 183 QVMDYLKRINKEDGITVIINLHQVD 207 (243)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3444555544333578999999754
No 84
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.57 E-value=79 Score=25.31 Aligned_cols=23 Identities=9% Similarity=0.199 Sum_probs=14.9
Q ss_pred HHHHHHHHHcCCCCEEEEEechH
Q 029359 101 GMEFMKWLWTRQEKEIAVVSHGI 123 (194)
Q Consensus 101 ~~~fL~~l~~~~~~~IlVVSHGg 123 (194)
+.+.|.++.+..+..|++|||--
T Consensus 179 l~~~l~~~~~~~~~tvii~sH~~ 201 (233)
T cd03258 179 ILALLRDINRELGLTIVLITHEM 201 (233)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCH
Confidence 34445444443467999999975
No 85
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.51 E-value=83 Score=25.26 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=15.6
Q ss_pred HHHHHHHHHcCCCCEEEEEechHHH
Q 029359 101 GMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 101 ~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
+.+.|.++.+..+..|++|||---.
T Consensus 183 l~~~l~~~~~~~~~tii~~tH~~~~ 207 (241)
T cd03256 183 VMDLLKRINREEGITVIVSLHQVDL 207 (241)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 3444444443346789999998543
No 86
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=27.94 E-value=89 Score=25.10 Aligned_cols=25 Identities=20% Similarity=0.168 Sum_probs=15.9
Q ss_pred HHHHHHHHHHcCCCCEEEEEechHH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
.+.+.|+++.+..+..|++|||---
T Consensus 183 ~l~~~l~~~~~~~g~tvii~sH~~~ 207 (233)
T PRK11629 183 SIFQLLGELNRLQGTAFLVVTHDLQ 207 (233)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 3444455554334679999999864
No 87
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=27.84 E-value=3.8e+02 Score=22.82 Aligned_cols=63 Identities=19% Similarity=0.247 Sum_probs=41.5
Q ss_pred CCC-HHHHHhhCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 60 RRS-ISEYHSLFPAIDFKLIESEDDKLWKADAREPFEEVTARGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 60 G~~-~~el~~~~P~~~~~~~~~~~~~~~~~~~gEs~~~v~~R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
|+| ..|++++-|+.+|--+. |.-.-|-|.-|.+++.+|+...++++.++.-+-++|-|--++-
T Consensus 17 GLsVlrei~~~LP~e~~iY~~---D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~ik~lVIACNTASa 80 (269)
T COG0796 17 GLSVLREIRRQLPDEDIIYVG---DTARFPYGEKSEEEIRERTLEIVDFLLERGIKALVIACNTASA 80 (269)
T ss_pred cHHHHHHHHHHCCCCcEEEEe---cCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEecchHHH
Confidence 444 67899999986553222 2122233556899999999999999998665555555554443
No 88
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=27.84 E-value=99 Score=24.35 Aligned_cols=25 Identities=24% Similarity=0.245 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
.++.+.|.++.+ .+..|++|||-.-
T Consensus 169 ~~l~~~l~~~~~-~~~tvi~~sH~~~ 193 (213)
T cd03235 169 EDIYELLRELRR-EGMTILVVTHDLG 193 (213)
T ss_pred HHHHHHHHHHHh-cCCEEEEEeCCHH
Confidence 334445555543 4678999999854
No 89
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=27.77 E-value=89 Score=24.75 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=15.1
Q ss_pred HHHHHHHHHcCCCCEEEEEechHH
Q 029359 101 GMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 101 ~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
+.+.|..+.+..+..|++|||-.-
T Consensus 180 l~~~l~~~~~~~~~tii~~tH~~~ 203 (221)
T TIGR02211 180 IFDLMLELNRELNTSFLVVTHDLE 203 (221)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHH
Confidence 344444444333578999999853
No 90
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=27.76 E-value=64 Score=27.06 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEEechH
Q 029359 96 EVTARGMEFMKWLWTRQEKEIAVVSHGI 123 (194)
Q Consensus 96 ~v~~R~~~fL~~l~~~~~~~IlVVSHGg 123 (194)
+..+++.+.+..+.. .+..|+|||||+
T Consensus 31 ~~i~~~~~~I~~~~~-~g~~vvlV~Sga 57 (266)
T PRK12314 31 ERIEQLVFVISDLMN-KGKEVILVSSGA 57 (266)
T ss_pred HHHHHHHHHHHHHHH-CCCeEEEEeeCc
Confidence 344444444444443 356799999983
No 91
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=27.50 E-value=85 Score=25.89 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHHHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIFLQ 126 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~Ir 126 (194)
..+.+.|+++.+..+.+|++|||-.-.-
T Consensus 187 ~~l~~~l~~~~~~~g~tiiivsH~~~~~ 214 (265)
T TIGR02769 187 AVILELLRKLQQAFGTAYLFITHDLRLV 214 (265)
T ss_pred HHHHHHHHHHHHhcCcEEEEEeCCHHHH
Confidence 3445555555543367999999986543
No 92
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=27.47 E-value=1.2e+02 Score=20.16 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCEEEEEe-ch-----HHHHHHHHHHh
Q 029359 90 AREPFEEVTARGMEFMKWLWTRQEKEIAVVS-HG-----IFLQQTLNALL 133 (194)
Q Consensus 90 ~gEs~~~v~~R~~~fL~~l~~~~~~~IlVVS-HG-----g~Ir~ll~~l~ 133 (194)
.|-+.++....+..+|+.......+.+.||+ .| ++|+..+..++
T Consensus 4 HG~~~~eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~Lk~~V~~~L 53 (83)
T PF01713_consen 4 HGLTVEEALRALEEFLDEARQRGIRELRIITGKGNHSKGGVLKRAVRRWL 53 (83)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCcHHHHHHHHH
Confidence 4667889999999999998866556666654 33 67888777666
No 93
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.44 E-value=1e+02 Score=23.51 Aligned_cols=25 Identities=24% Similarity=0.134 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
+++.+.|+.+.+. +..|+++||-.-
T Consensus 132 ~~l~~~l~~~~~~-g~tiii~th~~~ 156 (173)
T cd03230 132 REFWELLRELKKE-GKTILLSSHILE 156 (173)
T ss_pred HHHHHHHHHHHHC-CCEEEEECCCHH
Confidence 3444555555443 578999999854
No 94
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=27.28 E-value=97 Score=24.33 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=14.6
Q ss_pred HHHHHHHHHcCCCCEEEEEechHH
Q 029359 101 GMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 101 ~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
+.+.|.++.+. +..|++|||---
T Consensus 173 ~~~~l~~~~~~-~~tvi~~sH~~~ 195 (211)
T cd03225 173 LLELLKKLKAE-GKTIIIVTHDLD 195 (211)
T ss_pred HHHHHHHHHHc-CCEEEEEeCCHH
Confidence 34444444433 678999999854
No 95
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=27.24 E-value=87 Score=25.77 Aligned_cols=26 Identities=19% Similarity=0.428 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
..+...|..+.+..+..|++|||-.-
T Consensus 165 ~~l~~~L~~~~~~~g~tviivsH~~~ 190 (255)
T PRK11248 165 EQMQTLLLKLWQETGKQVLLITHDIE 190 (255)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 34445555554334678999999864
No 96
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=27.15 E-value=92 Score=24.85 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
+.+.+.|.++.+..+..|++|||---.
T Consensus 183 ~~l~~~l~~~~~~~~~tii~~sH~~~~ 209 (228)
T PRK10584 183 DKIADLLFSLNREHGTTLILVTHDLQL 209 (228)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 344455555544336799999999653
No 97
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=27.06 E-value=88 Score=25.91 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=15.4
Q ss_pred HHHHHHHHHHcCCCCEEEEEechH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGI 123 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg 123 (194)
.+.+.|.++.+..+..|++|||--
T Consensus 181 ~l~~~l~~~~~~~g~tiiivsH~~ 204 (269)
T PRK11831 181 VLVKLISELNSALGVTCVVVSHDV 204 (269)
T ss_pred HHHHHHHHHHHhcCcEEEEEecCH
Confidence 344455555443367999999984
No 98
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=26.81 E-value=93 Score=25.66 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCCCEEEEEechHH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
++.+.|.++.+..+..|++|||-.-
T Consensus 185 ~~~~~l~~l~~~~~~tiii~sH~~~ 209 (265)
T PRK10575 185 DVLALVHRLSQERGLTVIAVLHDIN 209 (265)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3445555555444678999999854
No 99
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=26.77 E-value=94 Score=25.02 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCCCCEEEEEechHH
Q 029359 101 GMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 101 ~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
+.+.|.++.+..+..|++|||---
T Consensus 153 l~~~l~~~~~~~~~tii~~sH~~~ 176 (230)
T TIGR01184 153 LQEELMQIWEEHRVTVLMVTHDVD 176 (230)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHH
Confidence 344444444334678999999864
No 100
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=26.74 E-value=1.1e+02 Score=23.27 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
+.+...|+++.+ .+..|+++||-.-
T Consensus 119 ~~l~~~l~~~~~-~~~tiii~sh~~~ 143 (163)
T cd03216 119 ERLFKVIRRLRA-QGVAVIFISHRLD 143 (163)
T ss_pred HHHHHHHHHHHH-CCCEEEEEeCCHH
Confidence 344555555543 3679999999965
No 101
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=26.66 E-value=90 Score=24.76 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
+.+.+.|.++.+..+..|++|||-.-
T Consensus 182 ~~l~~~l~~~~~~~~~tii~~sH~~~ 207 (228)
T cd03257 182 AQILDLLKKLQEELGLTLLFITHDLG 207 (228)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 33444455544433679999999864
No 102
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=26.54 E-value=73 Score=26.56 Aligned_cols=35 Identities=14% Similarity=0.035 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCEEEEEechHHHHH
Q 029359 91 REPFEEVTARGMEFMKWLWTRQEKEIAVVSHGIFLQQ 127 (194)
Q Consensus 91 gEs~~~v~~R~~~fL~~l~~~~~~~IlVVSHGg~Ir~ 127 (194)
-.|+++..+|+...+. ...++++.++|||+++.-.
T Consensus 126 i~s~~eA~~~ive~~~--~~~~~~~~VliaH~~~~G~ 160 (238)
T cd07397 126 VISLEESAQRIIAAAK--KAPPDLPLILLAHNGPSGL 160 (238)
T ss_pred CCCHHHHHHHHHHHhh--hcCCCCCeEEEeCcCCcCC
Confidence 4566666666665553 2245677899999997544
No 103
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=26.38 E-value=94 Score=26.06 Aligned_cols=26 Identities=35% Similarity=0.387 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
++...|..+....+.+|++|||..-.
T Consensus 183 ~l~~~l~~l~~~~g~tvl~vtH~~~~ 208 (286)
T PRK13646 183 QVMRLLKSLQTDENKTIILVSHDMNE 208 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 34445555544446899999999654
No 104
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=26.26 E-value=1e+02 Score=24.21 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=14.2
Q ss_pred HHHHHHHcCCCCEEEEEechHH
Q 029359 103 EFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 103 ~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
..|.++.+..+..|++|||..-
T Consensus 171 ~~l~~~~~~~~~tvi~~sH~~~ 192 (213)
T cd03301 171 AELKRLQQRLGTTTIYVTHDQV 192 (213)
T ss_pred HHHHHHHHHcCCEEEEEeCCHH
Confidence 3444444333679999999863
No 105
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.21 E-value=93 Score=25.16 Aligned_cols=27 Identities=30% Similarity=0.195 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEechHH
Q 029359 98 TARGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 98 ~~R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
..++.+.|.++.+..+..|++|||---
T Consensus 171 ~~~l~~~L~~~~~~~g~tvii~sH~~~ 197 (242)
T cd03295 171 RDQLQEEFKRLQQELGKTIVFVTHDID 197 (242)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 344445555554433678999999854
No 106
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=26.13 E-value=98 Score=24.84 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
++.+.|.++.+..+.+|++|||-.-.
T Consensus 167 ~~~~~l~~~~~~~~~tiii~sH~~~~ 192 (232)
T PRK10771 167 EMLTLVSQVCQERQLTLLMVSHSLED 192 (232)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 34445555544336799999998764
No 107
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.09 E-value=96 Score=24.49 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=15.6
Q ss_pred HHHHHHHHHcCCCCEEEEEechHHH
Q 029359 101 GMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 101 ~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
+...|.++.+..+..|+++||-.-.
T Consensus 170 l~~~l~~~~~~~~~tiii~sH~~~~ 194 (214)
T cd03297 170 LLPELKQIKKNLNIPVIFVTHDLSE 194 (214)
T ss_pred HHHHHHHHHHHcCcEEEEEecCHHH
Confidence 3344444443335789999998754
No 108
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=25.96 E-value=1.2e+02 Score=24.55 Aligned_cols=37 Identities=19% Similarity=0.068 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHHHHH-cCCCCEEEEEechHHHHH
Q 029359 91 REPFEEVTARGMEFMKWLW-TRQEKEIAVVSHGIFLQQ 127 (194)
Q Consensus 91 gEs~~~v~~R~~~fL~~l~-~~~~~~IlVVSHGg~Ir~ 127 (194)
++...++.++...+|+... +..+++++||||-.....
T Consensus 141 ~~~~~~~~~~~l~~l~~~l~~~~~~~~ivvtH~pP~~~ 178 (239)
T TIGR03729 141 PMSDPERTAIVLKQLKKQLNQLDNKQVIFVTHFVPHRD 178 (239)
T ss_pred CCChHHHHHHHHHHHHHHHHhcCCCCEEEEEcccchHH
Confidence 4455666666666665544 345678999999865543
No 109
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=25.76 E-value=97 Score=25.19 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
+.+.+.|..+.+..+.+|++|||..-.
T Consensus 185 ~~l~~~l~~~~~~~~~tii~vsH~~~~ 211 (253)
T TIGR02323 185 ARLLDLLRGLVRDLGLAVIIVTHDLGV 211 (253)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 344455555544346799999998543
No 110
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=25.60 E-value=1.1e+02 Score=24.11 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
+++.+.|.++.+ .+..|++|||---
T Consensus 173 ~~~~~~l~~~~~-~~~tiiivtH~~~ 197 (214)
T cd03292 173 WEIMNLLKKINK-AGTTVVVATHAKE 197 (214)
T ss_pred HHHHHHHHHHHH-cCCEEEEEeCCHH
Confidence 344455555543 3678999999853
No 111
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=25.46 E-value=1e+02 Score=24.29 Aligned_cols=23 Identities=17% Similarity=0.440 Sum_probs=14.9
Q ss_pred HHHHHHHHcCCCCEEEEEechHH
Q 029359 102 MEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 102 ~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
.+.|+++.+..+..|++|||.--
T Consensus 168 ~~~l~~~~~~~~~tii~vsh~~~ 190 (213)
T TIGR01277 168 LALVKQLCSERQRTLLMVTHHLS 190 (213)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHH
Confidence 34444444334679999999964
No 112
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.33 E-value=1.1e+02 Score=24.61 Aligned_cols=25 Identities=16% Similarity=-0.077 Sum_probs=16.0
Q ss_pred HHHHHHHHHcCCCCEEEEEechHHH
Q 029359 101 GMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 101 ~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
+.+.|+++.+..+.+|+||||---.
T Consensus 169 l~~~l~~~~~~~~~tiii~sh~~~~ 193 (232)
T cd03300 169 MQLELKRLQKELGITFVFVTHDQEE 193 (232)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3344444444336799999998753
No 113
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=25.30 E-value=1.1e+02 Score=24.07 Aligned_cols=24 Identities=13% Similarity=0.004 Sum_probs=15.4
Q ss_pred HHHHHHHHHHcCCCCEEEEEechHH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
.+...|.++.+ .+..|++|||..-
T Consensus 165 ~l~~~l~~~~~-~~~tiii~sH~~~ 188 (207)
T PRK13539 165 LFAELIRAHLA-QGGIVIAATHIPL 188 (207)
T ss_pred HHHHHHHHHHH-CCCEEEEEeCCch
Confidence 34455555443 3678999999853
No 114
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=25.25 E-value=1.2e+02 Score=24.26 Aligned_cols=33 Identities=27% Similarity=0.234 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHHHHc-CCCCEEEEEe--chHHH
Q 029359 93 PFEEVTARGMEFMKWLWT-RQEKEIAVVS--HGIFL 125 (194)
Q Consensus 93 s~~~v~~R~~~fL~~l~~-~~~~~IlVVS--HGg~I 125 (194)
|.+++.+|+++.-++|.+ +.+++.++|| +|+++
T Consensus 13 see~I~~ri~ela~~I~~~y~g~~~~vv~iLkGs~~ 48 (178)
T COG0634 13 SEEQIKARIKELAAQITEDYGGKDPLVVGVLKGSFP 48 (178)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCceEEEEEcccchh
Confidence 578999999999999986 4456666655 77765
No 115
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.24 E-value=1.2e+02 Score=24.14 Aligned_cols=25 Identities=16% Similarity=0.061 Sum_probs=15.6
Q ss_pred HHHHHHHHHcCCCCEEEEEechHHH
Q 029359 101 GMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 101 ~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
+...|.++.+..+..|++|||..-.
T Consensus 170 l~~~l~~~~~~~~~tvi~~tH~~~~ 194 (220)
T cd03265 170 VWEYIEKLKEEFGMTILLTTHYMEE 194 (220)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 3344444443336789999998653
No 116
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=25.19 E-value=1.1e+02 Score=24.11 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=14.6
Q ss_pred HHHHHHHHHcCCCCEEEEEechHH
Q 029359 101 GMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 101 ~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
+...|.++.+ .+..|++|||---
T Consensus 177 l~~~l~~~~~-~~~tii~vsH~~~ 199 (216)
T TIGR00960 177 IMRLFEEFNR-RGTTVLVATHDIN 199 (216)
T ss_pred HHHHHHHHHH-CCCEEEEEeCCHH
Confidence 3344444433 3678999999853
No 117
>smart00463 SMR Small MutS-related domain.
Probab=25.04 E-value=2.1e+02 Score=18.86 Aligned_cols=31 Identities=10% Similarity=0.115 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCC-CEEEEEe
Q 029359 90 AREPFEEVTARGMEFMKWLWTRQE-KEIAVVS 120 (194)
Q Consensus 90 ~gEs~~~v~~R~~~fL~~l~~~~~-~~IlVVS 120 (194)
.|-+.++....+..+|+....... +.+.||+
T Consensus 7 HG~~~~eA~~~l~~~l~~~~~~~~~~~~~II~ 38 (80)
T smart00463 7 HGLTVEEALTALDKFLNNARLKGLEQKLVIIT 38 (80)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCceEEEEE
Confidence 577889999999999999887654 4555553
No 118
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=24.93 E-value=98 Score=23.01 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=27.6
Q ss_pred CCCCC-HHHHH---HHHHHHHHHHHcCCCCEEEEEechHHHHH
Q 029359 89 DAREP-FEEVT---ARGMEFMKWLWTRQEKEIAVVSHGIFLQQ 127 (194)
Q Consensus 89 ~~gEs-~~~v~---~R~~~fL~~l~~~~~~~IlVVSHGg~Ir~ 127 (194)
|||.. ...+. .++..++++..+. ++-|..+|||..+-+
T Consensus 44 pGG~~~~~~l~~~~~~l~~~~~~~~~~-~k~iaaIC~g~~~L~ 85 (147)
T PF01965_consen 44 PGGHGGADDLRTDSKDLLELLKEFYEA-GKPIAAICHGPAVLA 85 (147)
T ss_dssp E-BTHHHHHHTTCHHHHHHHHHHHHHT-T-EEEEETTCHHHHH
T ss_pred CCCCchhhhHhhHHHHHHHHHHHHHHc-CCeEEecCCCcchhh
Confidence 57766 67776 6888888887765 789999999995544
No 119
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.74 E-value=1.1e+02 Score=24.85 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=15.9
Q ss_pred HHHHHHHHHHcCCCCEEEEEechHH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
.+...|..+.+..+..|++|||---
T Consensus 169 ~l~~~l~~~~~~~g~tii~~sH~~~ 193 (241)
T PRK14250 169 IIEELIVKLKNKMNLTVIWITHNME 193 (241)
T ss_pred HHHHHHHHHHHhCCCEEEEEeccHH
Confidence 3444455544434679999999854
No 120
>TIGR01552 phd_fam prevent-host-death family protein. This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family.
Probab=24.72 E-value=1.7e+02 Score=17.59 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCEEEEEechHH
Q 029359 93 PFEEVTARGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 93 s~~~v~~R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
|..+++++....++.+... + .|+|.-||..
T Consensus 3 ~~te~r~~~~~~l~~v~~~-~-pv~It~~g~~ 32 (52)
T TIGR01552 3 SLSEAKNKLGELLKRVRDG-E-PVTITKRGRP 32 (52)
T ss_pred CHHHHHHHHHHHHHHHHCC-C-CEEEEECCcc
Confidence 4678888999988887642 2 6777777763
No 121
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=24.69 E-value=1.1e+02 Score=24.25 Aligned_cols=26 Identities=27% Similarity=0.204 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
+.+...|+++.+..+.+|++|||..-
T Consensus 178 ~~l~~~l~~~~~~~~~tii~~sh~~~ 203 (220)
T TIGR02982 178 RDVVELMQKLAREQGCTILIVTHDNR 203 (220)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 34445555554434689999999964
No 122
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=24.52 E-value=1.3e+02 Score=23.49 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=16.1
Q ss_pred HHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
++.+.|+.+.+ .+..|++|||-.-.
T Consensus 127 ~l~~~l~~~~~-~g~tvIivSH~~~~ 151 (176)
T cd03238 127 QLLEVIKGLID-LGNTVILIEHNLDV 151 (176)
T ss_pred HHHHHHHHHHh-CCCEEEEEeCCHHH
Confidence 33444444443 46899999999754
No 123
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=24.48 E-value=1.2e+02 Score=23.75 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
+.+...|.++.+ .+..|++|||---
T Consensus 163 ~~l~~~l~~~~~-~~~tii~~sH~~~ 187 (205)
T cd03226 163 ERVGELIRELAA-QGKAVIVITHDYE 187 (205)
T ss_pred HHHHHHHHHHHH-CCCEEEEEeCCHH
Confidence 334445555443 3678999999864
No 124
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=24.45 E-value=2.2e+02 Score=22.61 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHHHHH-cCCCCEEEEEec--hHHHHHHHHHHh
Q 029359 92 EPFEEVTARGMEFMKWLW-TRQEKEIAVVSH--GIFLQQTLNALL 133 (194)
Q Consensus 92 Es~~~v~~R~~~fL~~l~-~~~~~~IlVVSH--Gg~Ir~ll~~l~ 133 (194)
.++..+.+.+...++.+. ++++.+|+|+.| ||.+-+++...+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGaiA~l~a~~l 149 (229)
T cd00519 105 SAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGALASLLALDL 149 (229)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHHHHHHHHHHHH
Confidence 345556666666666655 367889999999 577766666543
No 125
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=24.35 E-value=1.1e+02 Score=25.66 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
+++...|..+.+..+..|++|||---
T Consensus 191 ~~l~~~l~~~~~~~~~tviiisH~~~ 216 (272)
T PRK13547 191 HRLLDTVRRLARDWNLGVLAIVHDPN 216 (272)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 34444455444433678999999854
No 126
>PF09174 Maf1: Maf1 regulator; InterPro: IPR015257 Maf1 is a negative regulator of RNA polymerase III [, ]. It targets the initiation factor TFIIIB []. ; PDB: 3NR5_A.
Probab=24.22 E-value=1.2e+02 Score=24.07 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=39.4
Q ss_pred HHHHHhhCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCCEEEEEechHHHHHHHHHHhcCCCCCCCC
Q 029359 63 ISEYHSLFPAIDFKLIESEDDKLWKADAREPFEEVTARGMEFMKWLWTRQEKEIAVVSHGIFLQQTLNALLNDCQTSPNQ 142 (194)
Q Consensus 63 ~~el~~~~P~~~~~~~~~~~~~~~~~~~gEs~~~v~~R~~~fL~~l~~~~~~~IlVVSHGg~Ir~ll~~l~~~~~~~~~~ 142 (194)
+.-|-..||++||+.+..+ .+. .-++.+.|...+...|..+..... .++...|-..+..
T Consensus 75 IatLNasfPDYDFS~l~p~---~F~--~e~s~~~v~~~i~~~L~~~~~~~~--------~~~~~~lW~~Id~-------- 133 (179)
T PF09174_consen 75 IATLNASFPDYDFSNLRPE---DFS--REPSLQSVINSINSNLSSLGKNYY--------SGFLPWLWKAIDE-------- 133 (179)
T ss_dssp HHHHHHHHTT---TT--GG---GEE--E-S-HHHHHHHHHHHHHHHHGGGH--------HHHHHHHHHHHHH--------
T ss_pred HHHHhccCCCcccccCCHH---HcE--ecCCHHHHHHHHHHHHHhhccccc--------hhhhHHHHHHHHH--------
Confidence 4556678999999976532 221 123899999999998888875322 3444444444332
Q ss_pred CCCCCccCceEEEEEE
Q 029359 143 ELCPRFTNCEIRSVVI 158 (194)
Q Consensus 143 ~~~~~~~Ncsit~i~~ 158 (194)
...++.|+|..+.-
T Consensus 134 --~i~l~~C~iYsy~p 147 (179)
T PF09174_consen 134 --EIDLKDCDIYSYNP 147 (179)
T ss_dssp --HH-GGG-EEEEE--
T ss_pred --hhCccCceEEEEcc
Confidence 13578999998875
No 127
>PRK04155 chaperone protein HchA; Provisional
Probab=24.17 E-value=1e+02 Score=26.33 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
+.+.+++++..+ .++-|+.||||..+
T Consensus 167 ~~l~~ll~~~~~-~~K~VaAICHGPa~ 192 (287)
T PRK04155 167 EDVAAALQWALD-NDRFIITLCHGPAA 192 (287)
T ss_pred HHHHHHHHHHHH-cCCEEEEEChHHHH
Confidence 346667777664 47899999999953
No 128
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=24.17 E-value=1.1e+02 Score=25.13 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
.+.++|+++.+..+..|++|||.--.
T Consensus 190 ~l~~~l~~~~~~~g~tvii~tH~~~~ 215 (262)
T PRK09984 190 IVMDTLRDINQNDGITVVVTLHQVDY 215 (262)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 34445555543336799999999864
No 129
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=24.08 E-value=88 Score=26.94 Aligned_cols=27 Identities=30% Similarity=0.172 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEechHH
Q 029359 98 TARGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 98 ~~R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
++..+..+..|.+.-+++|++|||..-
T Consensus 171 R~~lQ~e~~~lq~~l~kTivfVTHDid 197 (309)
T COG1125 171 RKQLQEEIKELQKELGKTIVFVTHDID 197 (309)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecCHH
Confidence 344556666666666799999999854
No 130
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=24.05 E-value=1.1e+02 Score=26.28 Aligned_cols=27 Identities=11% Similarity=-0.084 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
..+...|.++.+..+.+|++|||.--.
T Consensus 137 ~~l~~~l~~l~~~~g~tiiivTHd~~e 163 (325)
T TIGR01187 137 DQMQLELKTIQEQLGITFVFVTHDQEE 163 (325)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 334445555544346789999998653
No 131
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=23.96 E-value=1.1e+02 Score=26.83 Aligned_cols=29 Identities=14% Similarity=-0.076 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEechHHHH
Q 029359 98 TARGMEFMKWLWTRQEKEIAVVSHGIFLQ 126 (194)
Q Consensus 98 ~~R~~~fL~~l~~~~~~~IlVVSHGg~Ir 126 (194)
++++...|..+.+..+.+|++|||.----
T Consensus 172 r~~l~~~l~~l~~~~g~tii~vTHd~~e~ 200 (351)
T PRK11432 172 RRSMREKIRELQQQFNITSLYVTHDQSEA 200 (351)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence 33444555555544467899999988653
No 132
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=23.86 E-value=1.2e+02 Score=23.31 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 98 TARGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 98 ~~R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
.+.+.+.|..+.+..+..|++|||-.-.
T Consensus 133 ~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 133 QIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 4455556666554335789999998654
No 133
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.84 E-value=1.2e+02 Score=23.92 Aligned_cols=25 Identities=12% Similarity=0.070 Sum_probs=15.4
Q ss_pred HHHHHHHHHcCCCCEEEEEechHHH
Q 029359 101 GMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 101 ~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
+.+.|..+.+..+..|++|||-.-.
T Consensus 167 l~~~l~~~~~~~~~tii~~sH~~~~ 191 (211)
T cd03298 167 MLDLVLDLHAETKMTVLMVTHQPED 191 (211)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHH
Confidence 3344444443336789999997653
No 134
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=23.82 E-value=1.2e+02 Score=24.32 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEechH
Q 029359 98 TARGMEFMKWLWTRQEKEIAVVSHGI 123 (194)
Q Consensus 98 ~~R~~~fL~~l~~~~~~~IlVVSHGg 123 (194)
.+++.+.|.++.+ .+..|+++||-.
T Consensus 173 ~~~l~~~l~~~~~-~~~tiii~sH~~ 197 (237)
T PRK11614 173 IQQIFDTIEQLRE-QGMTIFLVEQNA 197 (237)
T ss_pred HHHHHHHHHHHHH-CCCEEEEEeCcH
Confidence 3444555555543 367999999974
No 135
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=23.77 E-value=2.6e+02 Score=27.43 Aligned_cols=45 Identities=20% Similarity=0.196 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCEEEEEech---HHHHHHHHHHhcC
Q 029359 90 AREPFEEVTARGMEFMKWLWTRQEKEIAVVSHG---IFLQQTLNALLND 135 (194)
Q Consensus 90 ~gEs~~~v~~R~~~fL~~l~~~~~~~IlVVSHG---g~Ir~ll~~l~~~ 135 (194)
.|.+.++...++.+||+......-..|.| =|| |++|..+..++..
T Consensus 699 ~G~~~~eA~~~l~~~ld~a~~~g~~~v~I-IHGkGtG~Lr~~v~~~L~~ 746 (771)
T TIGR01069 699 RGQRSEEALDRLEKFLNDALLAGYEVVLI-IHGKGSGKLRKGVQELLKN 746 (771)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEEE-EcCCChhHHHHHHHHHhcC
Confidence 69999999999999999987654455544 466 8999988877764
No 136
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=23.67 E-value=1.3e+02 Score=23.38 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
+.+.+.|+.+.+ .+..|++|||-.-+
T Consensus 171 ~~l~~~l~~~~~-~~~tii~~sh~~~~ 196 (206)
T TIGR03608 171 DEVLDLLLELND-EGKTIIIVTHDPEV 196 (206)
T ss_pred HHHHHHHHHHHh-cCCEEEEEeCCHHH
Confidence 334445555443 36799999999653
No 137
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=23.61 E-value=1.2e+02 Score=24.46 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=15.0
Q ss_pred HHHHHHHHcCCCCEEEEEechHHH
Q 029359 102 MEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 102 ~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
.+.|..+.+..+..|++|||---.
T Consensus 172 ~~~l~~~~~~~~~tiii~sH~~~~ 195 (236)
T TIGR03864 172 VAHVRALCRDQGLSVLWATHLVDE 195 (236)
T ss_pred HHHHHHHHHhCCCEEEEEecChhh
Confidence 344444443346789999997643
No 138
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.55 E-value=1.1e+02 Score=25.59 Aligned_cols=27 Identities=22% Similarity=0.131 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
.++...|..+.+..+.+|++|||-.-.
T Consensus 181 ~~l~~~l~~l~~~~g~tvi~vtHd~~~ 207 (287)
T PRK13637 181 DEILNKIKELHKEYNMTIILVSHSMED 207 (287)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 344455555544346799999999643
No 139
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=23.53 E-value=1.2e+02 Score=23.74 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=14.6
Q ss_pred HHHHHHHHHcCCCCEEEEEechHH
Q 029359 101 GMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 101 ~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
+.+.|+++.+ .+..|++|||-.-
T Consensus 176 l~~~l~~~~~-~~~tii~~tH~~~ 198 (214)
T TIGR02673 176 ILDLLKRLNK-RGTTVIVATHDLS 198 (214)
T ss_pred HHHHHHHHHH-cCCEEEEEeCCHH
Confidence 3444444433 3679999999854
No 140
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.35 E-value=1.2e+02 Score=25.38 Aligned_cols=26 Identities=8% Similarity=0.080 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
.+...|.++....+.+|++|||-.-.
T Consensus 178 ~l~~~l~~l~~~~g~tilivtH~~~~ 203 (279)
T PRK13650 178 ELIKTIKGIRDDYQMTVISITHDLDE 203 (279)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 34445555544346899999999643
No 141
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=23.27 E-value=1.1e+02 Score=26.31 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEechHHHH
Q 029359 98 TARGMEFMKWLWTRQEKEIAVVSHGIFLQ 126 (194)
Q Consensus 98 ~~R~~~fL~~l~~~~~~~IlVVSHGg~Ir 126 (194)
+..+.+.|+++.+..+..|++|||..-.-
T Consensus 194 ~~~i~~lL~~l~~~~g~tii~itHdl~~v 222 (330)
T PRK15093 194 QAQIFRLLTRLNQNNNTTILLISHDLQML 222 (330)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 33445556665544467999999995443
No 142
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=23.22 E-value=1.2e+02 Score=24.34 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=14.7
Q ss_pred HHHHHHHHcCCCCEEEEEechHH
Q 029359 102 MEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 102 ~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
.+.|.++.+..+..|++|||-.-
T Consensus 165 ~~~l~~~~~~~~~tiii~sH~~~ 187 (230)
T TIGR02770 165 LKLLRELRQLFGTGILLITHDLG 187 (230)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHH
Confidence 34444444333578999999854
No 143
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=23.08 E-value=1.3e+02 Score=24.09 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=14.7
Q ss_pred HHHHHHHHcCCCCEEEEEechHHH
Q 029359 102 MEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 102 ~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
.+.|.++.+ .+..|++|||---.
T Consensus 183 ~~~l~~~~~-~~~tii~vsH~~~~ 205 (236)
T cd03219 183 AELIRELRE-RGITVLLVEHDMDV 205 (236)
T ss_pred HHHHHHHHH-CCCEEEEEecCHHH
Confidence 344444443 46789999997543
No 144
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=23.04 E-value=1.2e+02 Score=24.44 Aligned_cols=24 Identities=13% Similarity=0.075 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCCCCEEEEEechHH
Q 029359 101 GMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 101 ~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
+.+.|.++.+..+.+|+++||---
T Consensus 169 ~~~~l~~~~~~~~~tvli~sH~~~ 192 (237)
T TIGR00968 169 LRSWLRKLHDEVHVTTVFVTHDQE 192 (237)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHH
Confidence 334444444333679999999764
No 145
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=22.98 E-value=1.2e+02 Score=24.81 Aligned_cols=25 Identities=8% Similarity=0.247 Sum_probs=15.5
Q ss_pred HHHHHHHHHcCCCCEEEEEechHHH
Q 029359 101 GMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 101 ~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
+...|+.+.+..+..|++|||.--.
T Consensus 179 l~~~L~~~~~~~g~til~~sH~~~~ 203 (254)
T PRK10418 179 ILDLLESIVQKRALGMLLVTHDMGV 203 (254)
T ss_pred HHHHHHHHHHhcCcEEEEEecCHHH
Confidence 3444544443346789999997543
No 146
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=22.89 E-value=1.3e+02 Score=24.86 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
.++.+.|..+.+..+..|++|||---
T Consensus 180 ~~l~~~L~~l~~~~~~tiii~tH~~~ 205 (265)
T PRK10253 180 IDLLELLSELNREKGYTLAAVLHDLN 205 (265)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 34455555554434678999999975
No 147
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=22.78 E-value=1.2e+02 Score=24.17 Aligned_cols=27 Identities=15% Similarity=0.004 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
..+...|.++.+..+..|++|||---.
T Consensus 174 ~~l~~~l~~~~~~~~~tvii~sh~~~~ 200 (225)
T PRK10247 174 HNVNEIIHRYVREQNIAVLWVTHDKDE 200 (225)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECChHH
Confidence 334445555544346789999999644
No 148
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=22.71 E-value=1.2e+02 Score=26.52 Aligned_cols=29 Identities=14% Similarity=-0.034 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEechHHHH
Q 029359 98 TARGMEFMKWLWTRQEKEIAVVSHGIFLQ 126 (194)
Q Consensus 98 ~~R~~~fL~~l~~~~~~~IlVVSHGg~Ir 126 (194)
++++...|+.+.+..+.+|++|||.----
T Consensus 170 r~~l~~~L~~l~~~~~~tvi~vTHd~~ea 198 (353)
T TIGR03265 170 REHLRTEIRQLQRRLGVTTIMVTHDQEEA 198 (353)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence 34455556555544467899999998743
No 149
>PTZ00489 glutamate 5-kinase; Provisional
Probab=22.67 E-value=1.3e+02 Score=25.36 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEEechHHHH
Q 029359 96 EVTARGMEFMKWLWTRQEKEIAVVSHGIFLQ 126 (194)
Q Consensus 96 ~v~~R~~~fL~~l~~~~~~~IlVVSHGg~Ir 126 (194)
.......+.+.+|.+ ...|+|||||++-+
T Consensus 29 ~~~~~l~~~i~~l~~--~~~vilVssGava~ 57 (264)
T PTZ00489 29 HRIEALCRFIADLQT--KYEVILVTSGAVAA 57 (264)
T ss_pred HHHHHHHHHHHHHhc--CCeEEEEecChHhc
Confidence 445556666666664 36799999998663
No 150
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=22.62 E-value=1.3e+02 Score=23.91 Aligned_cols=24 Identities=13% Similarity=0.003 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCCCCEEEEEechHH
Q 029359 101 GMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 101 ~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
+.+.|.++.+..+.+|++|||---
T Consensus 170 l~~~l~~~~~~~~~tii~~sH~~~ 193 (230)
T TIGR03410 170 IGRVIRRLRAEGGMAILLVEQYLD 193 (230)
T ss_pred HHHHHHHHHHcCCcEEEEEeCCHH
Confidence 334444444333679999999964
No 151
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=22.43 E-value=1.2e+02 Score=26.74 Aligned_cols=29 Identities=14% Similarity=0.007 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 97 VTARGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 97 v~~R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
.+.++...|+.+.+..+.+|++|||.--.
T Consensus 179 ~r~~l~~~L~~l~~~~g~tiI~vTHd~~e 207 (375)
T PRK09452 179 LRKQMQNELKALQRKLGITFVFVTHDQEE 207 (375)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 34455556666655446789999998765
No 152
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=22.42 E-value=1.4e+02 Score=23.47 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEechHH
Q 029359 98 TARGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 98 ~~R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
.+++.+.|.++.+ .+..|++|||--.
T Consensus 171 ~~~l~~~l~~~~~-~~~tvi~~sh~~~ 196 (213)
T cd03262 171 VGEVLDVMKDLAE-EGMTMVVVTHEMG 196 (213)
T ss_pred HHHHHHHHHHHHH-cCCEEEEEeCCHH
Confidence 4455566666654 3578999999864
No 153
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=22.37 E-value=72 Score=22.96 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCEEEEEechHHHHHHH
Q 029359 91 REPFEEVTARGMEFMKWLWTRQEKEIAVVSHGIFLQQTL 129 (194)
Q Consensus 91 gEs~~~v~~R~~~fL~~l~~~~~~~IlVVSHGg~Ir~ll 129 (194)
.+...+...++..|++.... .+++|+|-|++|.-|+-.
T Consensus 52 ~~~~~~~~~~~~~~i~~~~~-~~~~VlVHC~~G~~RS~~ 89 (133)
T PF00782_consen 52 EEPILEHLDQAVEFIENAIS-EGGKVLVHCKAGLSRSGA 89 (133)
T ss_dssp TSHGGGGHHHHHHHHHHHHH-TTSEEEEEESSSSSHHHH
T ss_pred CcchHHHHHHHHHhhhhhhc-ccceeEEEeCCCcccchH
Confidence 44455666778888887653 468999999998766544
No 154
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=22.19 E-value=1.2e+02 Score=25.03 Aligned_cols=24 Identities=17% Similarity=0.459 Sum_probs=15.2
Q ss_pred HHHHHHHHcCCCCEEEEEechHHH
Q 029359 102 MEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 102 ~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
.+.|..+.+..+..|++|||-.-.
T Consensus 173 ~~~L~~~~~~~~~tviivsHd~~~ 196 (257)
T PRK11247 173 QDLIESLWQQHGFTVLLVTHDVSE 196 (257)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHH
Confidence 344444433346799999999653
No 155
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=22.17 E-value=1.4e+02 Score=23.97 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCCCEEEEEechHH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
++...|..+.+. +..|++|||---
T Consensus 180 ~~~~~l~~~~~~-~~tiii~sH~~~ 203 (224)
T cd03220 180 KCQRRLRELLKQ-GKTVILVSHDPS 203 (224)
T ss_pred HHHHHHHHHHhC-CCEEEEEeCCHH
Confidence 344555555443 578999999854
No 156
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=22.17 E-value=32 Score=29.50 Aligned_cols=29 Identities=31% Similarity=0.343 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHHHHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIFLQQ 127 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~Ir~ 127 (194)
+|+..||.......+=+|++||||.++.-
T Consensus 236 ~~i~g~ly~y~~~~~v~i~c~chg~~~~~ 264 (284)
T PF07897_consen 236 KRIEGFLYKYGKGEEVRIVCVCHGSFLSP 264 (284)
T ss_pred ceeeEEEEEecCCCeEEEEEEecCCCCCH
Confidence 44555554432223347999999998864
No 157
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=22.16 E-value=1.4e+02 Score=23.71 Aligned_cols=26 Identities=8% Similarity=-0.048 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
+.+..+|.++.. .+..|++|||-...
T Consensus 186 ~~l~~~l~~~~~-~g~tii~vsH~~~~ 211 (224)
T TIGR02324 186 QVVVELIAEAKA-RGAALIGIFHDEEV 211 (224)
T ss_pred HHHHHHHHHHHh-cCCEEEEEeCCHHH
Confidence 334455555543 35789999999543
No 158
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=21.94 E-value=1.3e+02 Score=24.64 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHHHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIFLQ 126 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~Ir 126 (194)
+.+.+.|+.+.+..+..|++|||---.-
T Consensus 188 ~~l~~~l~~~~~~~~~tii~isH~~~~~ 215 (258)
T PRK11701 188 ARLLDLLRGLVRELGLAVVIVTHDLAVA 215 (258)
T ss_pred HHHHHHHHHHHHhcCcEEEEEeCCHHHH
Confidence 3344455554443367899999986553
No 159
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=21.92 E-value=1.4e+02 Score=23.23 Aligned_cols=24 Identities=17% Similarity=0.172 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGI 123 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg 123 (194)
+.+.+.|+++.+. +..|++|||.-
T Consensus 148 ~~l~~~l~~~~~~-~~tiii~sh~~ 171 (194)
T cd03213 148 LQVMSLLRRLADT-GRTIICSIHQP 171 (194)
T ss_pred HHHHHHHHHHHhC-CCEEEEEecCc
Confidence 3444455555433 67999999985
No 160
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.82 E-value=1.5e+02 Score=23.13 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=14.9
Q ss_pred HHHHHHHHHHcCCCCEEEEEechH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGI 123 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg 123 (194)
.+.+.|+.+.+ .+..|++|||--
T Consensus 146 ~l~~~l~~~~~-~~~tiiivtH~~ 168 (192)
T cd03232 146 NIVRFLKKLAD-SGQAILCTIHQP 168 (192)
T ss_pred HHHHHHHHHHH-cCCEEEEEEcCC
Confidence 34444555443 367999999984
No 161
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=21.74 E-value=1.4e+02 Score=23.37 Aligned_cols=24 Identities=21% Similarity=0.054 Sum_probs=15.7
Q ss_pred HHHHHHHHHcCCCCEEEEEechHHH
Q 029359 101 GMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 101 ~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
+...|.++.+ .+..|++|||.--.
T Consensus 165 l~~~l~~~~~-~~~tii~~tH~~~~ 188 (208)
T cd03268 165 LRELILSLRD-QGITVLISSHLLSE 188 (208)
T ss_pred HHHHHHHHHH-CCCEEEEEcCCHHH
Confidence 3444555444 36799999998654
No 162
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.72 E-value=1.6e+02 Score=21.96 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 98 TARGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 98 ~~R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
..++...+..+... +..|+++||-.-.
T Consensus 116 ~~~l~~~l~~~~~~-~~tii~~sh~~~~ 142 (157)
T cd00267 116 RERLLELLRELAEE-GRTVIIVTHDPEL 142 (157)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEeCCHHH
Confidence 33444555554443 5799999998544
No 163
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=21.70 E-value=1.3e+02 Score=26.56 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
+.+...|.++.+..+.+|++|||-.-.
T Consensus 166 ~~l~~~l~~l~~~~~~Tii~vTHd~~e 192 (363)
T TIGR01186 166 DSMQDELKKLQATLQKTIVFITHDLDE 192 (363)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 344455555544446899999999864
No 164
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.70 E-value=1.4e+02 Score=24.60 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=15.0
Q ss_pred HHHHHHHHcCCCCEEEEEechHHH
Q 029359 102 MEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 102 ~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
.+.|.++....+..|++|||---.
T Consensus 190 ~~~l~~l~~~~~~tiiivsH~~~~ 213 (261)
T PRK14258 190 ESLIQSLRLRSELTMVIVSHNLHQ 213 (261)
T ss_pred HHHHHHHHHhCCCEEEEEECCHHH
Confidence 334444433346899999998643
No 165
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=21.66 E-value=1.4e+02 Score=24.40 Aligned_cols=30 Identities=10% Similarity=0.193 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEechHH
Q 029359 94 FEEVTARGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 94 ~~~v~~R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
+..+..+...+|..|.. .+.+|++++|-..
T Consensus 115 yg~~~~~fl~~l~~L~~-~g~nII~tAhe~~ 144 (220)
T TIGR01618 115 YQKLDLWFLDLLTVLKE-SNKNIYATAWELT 144 (220)
T ss_pred HHHHHHHHHHHHHHHHh-CCCcEEEEEeecc
Confidence 55667777777777765 5789999999863
No 166
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=21.62 E-value=1.3e+02 Score=24.95 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
.++...|+.+.+..+..|++|||---.
T Consensus 188 ~~~~~~l~~~~~~~~~tiiivsH~~~~ 214 (268)
T PRK10419 188 AGVIRLLKKLQQQFGTACLFITHDLRL 214 (268)
T ss_pred HHHHHHHHHHHHHcCcEEEEEECCHHH
Confidence 345555555554346799999999643
No 167
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=21.62 E-value=1.5e+02 Score=23.33 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=14.8
Q ss_pred HHHHHHHHHcCCCCEEEEEechHH
Q 029359 101 GMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 101 ~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
+.+.|.++.+ .+.+|++|||-.-
T Consensus 171 l~~~l~~~~~-~~~tiii~sH~~~ 193 (222)
T cd03224 171 IFEAIRELRD-EGVTILLVEQNAR 193 (222)
T ss_pred HHHHHHHHHH-CCCEEEEEeCCHH
Confidence 3444444443 3579999999854
No 168
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=21.61 E-value=1.2e+02 Score=24.95 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=15.9
Q ss_pred HHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
.+...|..+.+..+..|++|||..-.
T Consensus 187 ~l~~~l~~~~~~~g~tviivsH~~~~ 212 (267)
T PRK15112 187 QLINLMLELQEKQGISYIYVTQHLGM 212 (267)
T ss_pred HHHHHHHHHHHHcCcEEEEEeCCHHH
Confidence 34444444443335789999998643
No 169
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.61 E-value=1.4e+02 Score=24.72 Aligned_cols=23 Identities=9% Similarity=0.310 Sum_probs=14.5
Q ss_pred HHHHHHHHcCCCCEEEEEechHH
Q 029359 102 MEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 102 ~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
.+.|.++.+..+.+|++|||---
T Consensus 182 ~~~L~~~~~~~~~tiiivtH~~~ 204 (269)
T PRK13648 182 LDLVRKVKSEHNITIISITHDLS 204 (269)
T ss_pred HHHHHHHHHhcCCEEEEEecCch
Confidence 34444443333679999999854
No 170
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.50 E-value=1.3e+02 Score=24.84 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=14.9
Q ss_pred HHHHHHHHHcCCCCEEEEEechHH
Q 029359 101 GMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 101 ~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
+.+.|.++.+..+..|++|||-.-
T Consensus 199 l~~~l~~~~~~~g~tiii~tH~~~ 222 (269)
T cd03294 199 MQDELLRLQAELQKTIVFITHDLD 222 (269)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHH
Confidence 334444444333679999999854
No 171
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=21.40 E-value=1.4e+02 Score=24.55 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
.+.++++++.+ .++-|..||||..+
T Consensus 117 ~l~~ll~~f~~-~gK~VaAICHGp~~ 141 (232)
T cd03148 117 DVAAALQWAIK-NDRFVITLCHGPAA 141 (232)
T ss_pred HHHHHHHHHHH-cCCEEEEECcHHHH
Confidence 35566666554 46899999999954
No 172
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=21.35 E-value=94 Score=27.05 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=16.6
Q ss_pred EEEEEechHHHHHHHHHHh
Q 029359 115 EIAVVSHGIFLQQTLNALL 133 (194)
Q Consensus 115 ~IlVVSHGg~Ir~ll~~l~ 133 (194)
.|+|+|||.+-..++..+.
T Consensus 4 ~IIiasHG~~A~gl~~s~e 22 (322)
T PRK15088 4 AIIIGTHGWAAEQLLKTAE 22 (322)
T ss_pred eEEEEeCHHHHHHHHHHHH
Confidence 5899999999999998654
No 173
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=21.25 E-value=1.3e+02 Score=26.35 Aligned_cols=34 Identities=15% Similarity=0.285 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEEechHHHHHHHH
Q 029359 97 VTARGMEFMKWLWTRQEKEIAVVSHGIFLQQTLN 130 (194)
Q Consensus 97 v~~R~~~fL~~l~~~~~~~IlVVSHGg~Ir~ll~ 130 (194)
+++.+...|++|.+..+..|++|||..-+-+=++
T Consensus 188 ~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~a 221 (316)
T COG0444 188 VQAQILDLLKELQREKGTALILITHDLGVVAEIA 221 (316)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc
Confidence 4666777888888766789999999976655443
No 174
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=21.24 E-value=1.4e+02 Score=24.31 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
.+.+.|+.+.+..+..|++|||---.
T Consensus 184 ~l~~~l~~~~~~~~~tiiivsH~~~~ 209 (252)
T TIGR03005 184 EVLNVIRRLASEHDLTMLLVTHEMGF 209 (252)
T ss_pred HHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 34445555544336799999998643
No 175
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=21.20 E-value=1.4e+02 Score=23.97 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
.+.+.|+++.+ .+.+|++|||-.-+
T Consensus 183 ~l~~~l~~l~~-~~~tiii~sH~~~~ 207 (248)
T PRK09580 183 IVADGVNSLRD-GKRSFIIVTHYQRI 207 (248)
T ss_pred HHHHHHHHHHh-CCCEEEEEeCCHHH
Confidence 34444545543 35799999998543
No 176
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=21.19 E-value=1.6e+02 Score=22.97 Aligned_cols=24 Identities=8% Similarity=0.001 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcCCCCEEEEEechHH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
.+.+.|.++.+ .+..|++|||-..
T Consensus 165 ~l~~~l~~~~~-~~~tiii~sh~~~ 188 (200)
T PRK13540 165 TIITKIQEHRA-KGGAVLLTSHQDL 188 (200)
T ss_pred HHHHHHHHHHH-cCCEEEEEeCCch
Confidence 34444554433 3678999999743
No 177
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=21.03 E-value=1.5e+02 Score=23.79 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 98 TARGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 98 ~~R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
..++...|+++.+ .+.+|++|||.--.
T Consensus 177 ~~~l~~~l~~~~~-~~~tii~~sh~~~~ 203 (242)
T PRK11124 177 TAQIVSIIRELAE-TGITQVIVTHEVEV 203 (242)
T ss_pred HHHHHHHHHHHHH-cCCEEEEEeCCHHH
Confidence 3444555555543 36789999998654
No 178
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=20.95 E-value=1.4e+02 Score=24.54 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=15.8
Q ss_pred HHHHHHHHHcCCCCEEEEEechHHH
Q 029359 101 GMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 101 ~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
+...|.++.+..+..|++|||-.-.
T Consensus 179 l~~~l~~~~~~~~~tiii~sH~~~~ 203 (258)
T PRK13548 179 VLRLARQLAHERGLAVIVVLHDLNL 203 (258)
T ss_pred HHHHHHHHHHhcCCEEEEEECCHHH
Confidence 3445555542336789999998543
No 179
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=20.80 E-value=1.1e+02 Score=29.59 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 97 VTARGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 97 v~~R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
...++...+..+.. .+.+|+|||||+.-
T Consensus 30 ~l~~l~~~i~~l~~-~g~~vilVsSGA~a 57 (715)
T TIGR01092 30 RLGSICEQLSELNS-DGREVILVTSGAVA 57 (715)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEEccchHH
Confidence 34445444555443 36889999998776
No 180
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=20.79 E-value=1.5e+02 Score=24.04 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
.+...|.++.+..+..|+++||---.
T Consensus 191 ~l~~~L~~~~~~~~~tii~~sH~~~~ 216 (255)
T PRK11300 191 ELDELIAELRNEHNVTVLLIEHDMKL 216 (255)
T ss_pred HHHHHHHHHHhhcCCEEEEEeCCHHH
Confidence 34445555544335799999998543
No 181
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=20.77 E-value=1.3e+02 Score=26.95 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=15.3
Q ss_pred HHHHHHHHHcCCCCEEEEEechHH
Q 029359 101 GMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 101 ~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
+...|..+.+..+.+|++|||-.-
T Consensus 203 l~~~L~~l~~~~g~TIIivTHd~~ 226 (400)
T PRK10070 203 MQDELVKLQAKHQRTIVFISHDLD 226 (400)
T ss_pred HHHHHHHHHHHCCCeEEEEECCHH
Confidence 344444444334679999999864
No 182
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=20.73 E-value=1.5e+02 Score=23.66 Aligned_cols=24 Identities=17% Similarity=0.065 Sum_probs=15.2
Q ss_pred HHHHHHHHHHcCCCCEEEEEechHH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
.+.+.|.++.+ .+.+|++|||..-
T Consensus 151 ~l~~~l~~~~~-~~~tvii~sH~~~ 174 (223)
T TIGR03771 151 LLTELFIELAG-AGTAILMTTHDLA 174 (223)
T ss_pred HHHHHHHHHHH-cCCEEEEEeCCHH
Confidence 34444444443 3679999999854
No 183
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=20.70 E-value=1.5e+02 Score=23.56 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=15.1
Q ss_pred HHHHHHHHHHcCCCCEEEEEechH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGI 123 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg 123 (194)
.+.+.|+++.+ .+..|++|||-.
T Consensus 171 ~~~~~l~~~~~-~~~tii~~sH~~ 193 (232)
T cd03218 171 DIQKIIKILKD-RGIGVLITDHNV 193 (232)
T ss_pred HHHHHHHHHHH-CCCEEEEEeCCH
Confidence 34445555543 357899999975
No 184
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=20.61 E-value=1.6e+02 Score=22.36 Aligned_cols=21 Identities=14% Similarity=0.009 Sum_probs=13.5
Q ss_pred HHHHHHHcCCCCEEEEEechHH
Q 029359 103 EFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 103 ~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
+.|..+.+ .+..|++|||..-
T Consensus 137 ~~l~~~~~-~~~tii~~sh~~~ 157 (173)
T cd03246 137 QAIAALKA-AGATRIVIAHRPE 157 (173)
T ss_pred HHHHHHHh-CCCEEEEEeCCHH
Confidence 34444433 3578999999864
No 185
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.60 E-value=1.5e+02 Score=23.19 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=16.0
Q ss_pred HHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
.+.+.|+++.+ .+..|++|||---.
T Consensus 166 ~~~~~l~~~~~-~~~tii~~sH~~~~ 190 (210)
T cd03269 166 LLKDVIRELAR-AGKTVILSTHQMEL 190 (210)
T ss_pred HHHHHHHHHHH-CCCEEEEECCCHHH
Confidence 34445555443 35799999998653
No 186
>PF13175 AAA_15: AAA ATPase domain
Probab=20.55 E-value=1.5e+02 Score=25.56 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 96 EVTARGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 96 ~v~~R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
++++-...+|..+.......|++.||+-.|
T Consensus 385 ~~q~~~~~~L~~~~~~~~~QiiitTHSp~i 414 (415)
T PF13175_consen 385 QAQRKFIDFLKKLSKNNNIQIIITTHSPFI 414 (415)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence 455556667777766556789999998765
No 187
>PF02604 PhdYeFM_antitox: Antitoxin Phd_YefM, type II toxin-antitoxin system; InterPro: IPR006442 This entry is represented by Bacteriophage P1, prevent-host-death protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins is characterised by a region of about 55 amino acids toward the N-terminal end of bacterial proteins which are themselves only 85 amino acids, or thereabouts, in length. The best-characterised member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (IPR006440 from INTERPRO) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family. ; PDB: 3DBO_A 2ODK_B 3G5O_D 2A6Q_B 3D55_C 3OEI_E 3CTO_C 3K33_D 3KH2_F 3HS2_C ....
Probab=20.54 E-value=1.5e+02 Score=19.15 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCEEEEEechH
Q 029359 93 PFEEVTARGMEFMKWLWTRQEKEIAVVSHGI 123 (194)
Q Consensus 93 s~~~v~~R~~~fL~~l~~~~~~~IlVVSHGg 123 (194)
|..++.++...+++.+... +..|+|+-||.
T Consensus 5 s~~e~r~~~~~~l~~v~~~-~~pv~It~~g~ 34 (75)
T PF02604_consen 5 SITEFRNNFSELLDEVEEG-EEPVIITKNGK 34 (75)
T ss_dssp EHHHHHHTHHHHHHHHHHC-T-EEEEEETTE
T ss_pred cHHHHHHHHHHHHHHHHcC-CCeEEEEECCC
Confidence 4678888889988887752 23355555553
No 188
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.47 E-value=1.4e+02 Score=25.01 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=15.1
Q ss_pred HHHHHHHHHcCCCCEEEEEechHH
Q 029359 101 GMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 101 ~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
+.+.|.++.+..+..|++|||-.-
T Consensus 189 l~~~l~~~~~~~~~tiiiisH~~~ 212 (289)
T PRK13645 189 FINLFERLNKEYKKRIIMVTHNMD 212 (289)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHH
Confidence 334444444333678999999854
No 189
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=20.46 E-value=1.6e+02 Score=23.06 Aligned_cols=22 Identities=9% Similarity=-0.068 Sum_probs=13.7
Q ss_pred HHHHHHHHHcCCCCEEEEEechH
Q 029359 101 GMEFMKWLWTRQEKEIAVVSHGI 123 (194)
Q Consensus 101 ~~~fL~~l~~~~~~~IlVVSHGg 123 (194)
+.+.|+++.+ .+.+|++|||-.
T Consensus 168 l~~~l~~~~~-~~~tiii~sh~~ 189 (204)
T PRK13538 168 LEALLAQHAE-QGGMVILTTHQD 189 (204)
T ss_pred HHHHHHHHHH-CCCEEEEEecCh
Confidence 3344444433 357999999963
No 190
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=20.38 E-value=1.6e+02 Score=23.31 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=15.4
Q ss_pred HHHHHHHHHHcCCCCEEEEEechHH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
.+.++|..+.+ .+..|++|||..-
T Consensus 175 ~l~~~l~~~~~-~~~tiii~sH~~~ 198 (214)
T PRK13543 175 LVNRMISAHLR-GGGAALVTTHGAY 198 (214)
T ss_pred HHHHHHHHHHh-CCCEEEEEecChh
Confidence 34445555443 3578999999754
No 191
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=20.35 E-value=1.6e+02 Score=22.84 Aligned_cols=25 Identities=8% Similarity=-0.004 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEechH
Q 029359 98 TARGMEFMKWLWTRQEKEIAVVSHGI 123 (194)
Q Consensus 98 ~~R~~~fL~~l~~~~~~~IlVVSHGg 123 (194)
.+.+.++|.++.+ .+..|++|||--
T Consensus 163 ~~~l~~~l~~~~~-~~~tii~~sH~~ 187 (198)
T TIGR01189 163 VALLAGLLRAHLA-RGGIVLLTTHQD 187 (198)
T ss_pred HHHHHHHHHHHHh-CCCEEEEEEccc
Confidence 3444455555433 357899999964
No 192
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=20.34 E-value=1.6e+02 Score=22.56 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=15.1
Q ss_pred HHHHHHHHHHcCCCCEEEEEechH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGI 123 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg 123 (194)
.+.+.|..+.+ .+..|+++||-.
T Consensus 142 ~l~~~l~~~~~-~~~tiii~sh~~ 164 (182)
T cd03215 142 EIYRLIRELAD-AGKAVLLISSEL 164 (182)
T ss_pred HHHHHHHHHHH-CCCEEEEEeCCH
Confidence 34445555543 367999999985
No 193
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=20.31 E-value=1.4e+02 Score=26.26 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
+++...|+++.+..+.+|++|||.--
T Consensus 170 ~~l~~~L~~l~~~~g~tvI~vTHd~~ 195 (369)
T PRK11000 170 VQMRIEISRLHKRLGRTMIYVTHDQV 195 (369)
T ss_pred HHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence 33444555555434678999999875
No 194
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=20.25 E-value=1.4e+02 Score=26.07 Aligned_cols=28 Identities=11% Similarity=0.014 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 98 TARGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 98 ~~R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
+..+...|.++.+..+.+|++|||.--.
T Consensus 172 r~~l~~~L~~l~~~~g~tii~vTHd~~e 199 (353)
T PRK10851 172 RKELRRWLRQLHEELKFTSVFVTHDQEE 199 (353)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 3444555555554446789999998865
No 195
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=20.22 E-value=92 Score=22.75 Aligned_cols=18 Identities=11% Similarity=0.134 Sum_probs=15.7
Q ss_pred CEEEEEechHHHHHHHHH
Q 029359 114 KEIAVVSHGIFLQQTLNA 131 (194)
Q Consensus 114 ~~IlVVSHGg~Ir~ll~~ 131 (194)
++||+||+|-+.|+-++.
T Consensus 1 ~~vlfvC~~N~cRS~mAE 18 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAE 18 (126)
T ss_pred CeEEEEcCCcHHHHHHHH
Confidence 479999999999998874
No 196
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=20.21 E-value=1.4e+02 Score=26.08 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCCCCEEEEEechHH
Q 029359 99 ARGMEFMKWLWTRQEKEIAVVSHGIF 124 (194)
Q Consensus 99 ~R~~~fL~~l~~~~~~~IlVVSHGg~ 124 (194)
+++...|..+.+..+.+|++|||---
T Consensus 165 ~~l~~~L~~l~~~~g~tii~vTHd~~ 190 (352)
T PRK11144 165 RELLPYLERLAREINIPILYVSHSLD 190 (352)
T ss_pred HHHHHHHHHHHHhcCCeEEEEecCHH
Confidence 34445555554434578999999874
No 197
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.21 E-value=1.5e+02 Score=24.98 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCCCEEEEEechHHH
Q 029359 100 RGMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 100 R~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
.+...|.++.+..+.+|++|||-.-.
T Consensus 183 ~l~~~L~~l~~~~g~tviiitHd~~~ 208 (290)
T PRK13634 183 EMMEMFYKLHKEKGLTTVLVTHSMED 208 (290)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 34444555544446799999999654
No 198
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=20.19 E-value=1.4e+02 Score=25.90 Aligned_cols=27 Identities=7% Similarity=0.191 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCCCCEEEEEechHHHHH
Q 029359 101 GMEFMKWLWTRQEKEIAVVSHGIFLQQ 127 (194)
Q Consensus 101 ~~~fL~~l~~~~~~~IlVVSHGg~Ir~ 127 (194)
+...|+.+.+..+..|++|||-.-.-.
T Consensus 200 i~~lL~~l~~~~~~til~iTHdl~~~~ 226 (331)
T PRK15079 200 VVNLLQQLQREMGLSLIFIAHDLAVVK 226 (331)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 445555555434678999999976544
No 199
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=20.16 E-value=1.4e+02 Score=24.81 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=16.5
Q ss_pred HHHHHHHHHcCCCCEEEEEechHHH
Q 029359 101 GMEFMKWLWTRQEKEIAVVSHGIFL 125 (194)
Q Consensus 101 ~~~fL~~l~~~~~~~IlVVSHGg~I 125 (194)
+...|..+.+..+..|++|||-.-.
T Consensus 183 l~~~l~~l~~~~g~tillvtH~~~~ 207 (280)
T PRK13633 183 VVNTIKELNKKYGITIILITHYMEE 207 (280)
T ss_pred HHHHHHHHHHhcCCEEEEEecChHH
Confidence 3445555543346789999998775
No 200
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=20.02 E-value=3.5e+02 Score=26.62 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCEEEEEech---HHHHHHHHHHhcC
Q 029359 90 AREPFEEVTARGMEFMKWLWTRQEKEIAVVSHG---IFLQQTLNALLND 135 (194)
Q Consensus 90 ~gEs~~~v~~R~~~fL~~l~~~~~~~IlVVSHG---g~Ir~ll~~l~~~ 135 (194)
.|-+.++....+.+||+......-..|. |=|| |++|..+..++..
T Consensus 710 ~G~~~eeA~~~l~~fl~~a~~~g~~~v~-IIHGkGtG~Lr~~v~~~L~~ 757 (782)
T PRK00409 710 RGMRYEEALERLDKYLDDALLAGYGEVL-IIHGKGTGKLRKGVQEFLKK 757 (782)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCEEE-EEcCCChhHHHHHHHHHHcC
Confidence 6999999999999999998765444444 3455 7888888877654
Done!