BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029362
(194 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49209|RL91_ARATH 60S ribosomal protein L9-1 OS=Arabidopsis thaliana GN=RPL9B PE=2
SV=3
Length = 194
Score = 338 bits (868), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 162/194 (83%), Positives = 181/194 (93%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILSSETMDIPD V +K++AKVIEVEGPRGKL RDFKHLNLDF L+ D ETGK+KLKI
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
D+WFG+RKTSA+IRTALSHV NLI+GVT+G+RYKMRFVYAHFPINASIG + K+IEIRNF
Sbjct: 61 DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120
Query: 121 LGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEKKVRKV+MLDGVT++RS+KVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180
Query: 181 GIYVSEKSTILGEE 194
GIYVSEKS I+ EE
Sbjct: 181 GIYVSEKSKIVEEE 194
>sp|P30707|RL9_PEA 60S ribosomal protein L9 OS=Pisum sativum GN=RPL9 PE=2 SV=1
Length = 193
Score = 337 bits (865), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 166/194 (85%), Positives = 181/194 (93%), Gaps = 1/194 (0%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILSSETM+IPDGV +K+NAKVIEVEGPRGKL RDFKHLNLDF L+TDE GK+KLKI
Sbjct: 1 MKTILSSETMNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITDE-NGKKKLKI 59
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
DAWFGSRKTSAAIRTALSHV NLITGVTKG+RYKMRFVYA FPINASI N+NK+IEIRNF
Sbjct: 60 DAWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNF 119
Query: 121 LGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEKKVRKVD+LDGV++IRS+KVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 120 LGEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 179
Query: 181 GIYVSEKSTILGEE 194
GIYVSEK ++ EE
Sbjct: 180 GIYVSEKGAVVVEE 193
>sp|Q9SZX9|RL92_ARATH 60S ribosomal protein L9-2 OS=Arabidopsis thaliana GN=RPL9D PE=2
SV=1
Length = 194
Score = 333 bits (855), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 159/194 (81%), Positives = 178/194 (91%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILSSETMDIPDGV +K+NAKVIEVEGPRGKL+RDFKHLNLDF L+ D+ TGKR+LKI
Sbjct: 1 MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
D+WFGSRKTSA+IRTALSHV NLI GVT+G+ Y+MRFVYAHFPINASI NNK+IEIRNF
Sbjct: 61 DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120
Query: 121 LGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEKKVRKV+MLDGV ++RS+KVKDE++L+GNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLD 180
Query: 181 GIYVSEKSTILGEE 194
GIYVSEK I EE
Sbjct: 181 GIYVSEKGKIAVEE 194
>sp|P49210|RL9_ORYSJ 60S ribosomal protein L9 OS=Oryza sativa subsp. japonica GN=RPL9
PE=2 SV=3
Length = 190
Score = 324 bits (831), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 155/190 (81%), Positives = 175/190 (92%), Gaps = 4/190 (2%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTIL+SETM+IP+GV V++ AKV+ VEGPRGKL+R+FKHLNLDF L+ G RKL++
Sbjct: 1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLE----GGRKLQV 56
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
DAWFG+R+T AAIRTA+SHV NLITGVTKGYRYKMRFVYAHFPINASI N+N AIEIRNF
Sbjct: 57 DAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNF 116
Query: 121 LGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEKKVRKVDML+GVT++RS+KVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 117 LGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 176
Query: 181 GIYVSEKSTI 190
GIYVS+K TI
Sbjct: 177 GIYVSDKGTI 186
>sp|Q90YW0|RL9_ICTPU 60S ribosomal protein L9 OS=Ictalurus punctatus GN=rpl9 PE=2 SV=1
Length = 192
Score = 229 bits (583), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 113/194 (58%), Positives = 140/194 (72%), Gaps = 3/194 (1%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIPD V V + + + V+GPRG L R+F H+NL+ L+ ++ +KL++
Sbjct: 1 MKTILSTQTVDIPDNVDVTLKGRTVSVKGPRGVLRREFNHINLELRLLGKKQ---KKLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I +EIRNF
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNF 117
Query: 121 LGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +R+V M GV S KDELVL+GNDIELVS SAALI Q VKNKDIRKFLD
Sbjct: 118 LGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLD 177
Query: 181 GIYVSEKSTILGEE 194
GIYVSEK T++ E
Sbjct: 178 GIYVSEKGTVVEPE 191
>sp|P51410|RL9_MOUSE 60S ribosomal protein L9 OS=Mus musculus GN=Rpl9 PE=2 SV=2
Length = 192
Score = 227 bits (579), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 110/190 (57%), Positives = 140/190 (73%), Gaps = 3/190 (1%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V++ + + + V+GPRG L RDF H+N++ L+ + K++L++
Sbjct: 1 MKTILSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I N +EIRNF
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +R+V M GV S KDEL+L+GNDIELVS SAALI Q VKNKDIRKFLD
Sbjct: 118 LGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLD 177
Query: 181 GIYVSEKSTI 190
GIYVSEK T+
Sbjct: 178 GIYVSEKGTV 187
>sp|Q5IFJ7|RL9_MACFA 60S ribosomal protein L9 OS=Macaca fascicularis GN=RPL9 PE=2 SV=1
Length = 192
Score = 226 bits (577), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 111/190 (58%), Positives = 139/190 (73%), Gaps = 3/190 (1%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V + + + + V+GPRG L RDF H+N++ L+ + K++L++
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
D W+G+RK A IRT SHV N+I GVT G+RYKMR VYAHFPIN I N +EIRNF
Sbjct: 58 DKWWGNRKELATIRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +R+V M GV S KDEL+L+GNDIELVS SAALI Q VKNKDIRKFLD
Sbjct: 118 LGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLD 177
Query: 181 GIYVSEKSTI 190
GIYVSEK T+
Sbjct: 178 GIYVSEKGTV 187
>sp|P32969|RL9_HUMAN 60S ribosomal protein L9 OS=Homo sapiens GN=RPL9 PE=1 SV=1
Length = 192
Score = 226 bits (576), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 110/190 (57%), Positives = 139/190 (73%), Gaps = 3/190 (1%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V + + + + V+GPRG L RDF H+N++ L+ + K++L++
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I N +EIRNF
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +R+V M GV S KDEL+L+GNDIELVS SAALI Q VKNKDIRKFLD
Sbjct: 118 LGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLD 177
Query: 181 GIYVSEKSTI 190
GIYVSEK T+
Sbjct: 178 GIYVSEKGTV 187
>sp|Q3SYR7|RL9_BOVIN 60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1
Length = 192
Score = 226 bits (576), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 110/190 (57%), Positives = 139/190 (73%), Gaps = 3/190 (1%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V + + + + V+GPRG L RDF H+N++ L+ + K++L++
Sbjct: 1 MKTILSNQTVDIPENVDINLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I N +EIRNF
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +R+V M GV S KDEL+L+GNDIELVS SAALI Q VKNKDIRKFLD
Sbjct: 118 LGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLD 177
Query: 181 GIYVSEKSTI 190
GIYVSEK T+
Sbjct: 178 GIYVSEKGTV 187
>sp|P17077|RL9_RAT 60S ribosomal protein L9 OS=Rattus norvegicus GN=Rpl9 PE=1 SV=1
Length = 192
Score = 226 bits (576), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 110/190 (57%), Positives = 139/190 (73%), Gaps = 3/190 (1%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V + + + + V+GPRG L RDF H+N++ L+ + K++L++
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I N +EIRNF
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +R+V M GV S KDEL+L+GNDIELVS SAALI Q VKNKDIRKFLD
Sbjct: 118 LGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLD 177
Query: 181 GIYVSEKSTI 190
GIYVSEK T+
Sbjct: 178 GIYVSEKGTV 187
>sp|Q5R9Q7|RL9_PONAB 60S ribosomal protein L9 OS=Pongo abelii GN=RPL9 PE=2 SV=1
Length = 192
Score = 225 bits (573), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 110/190 (57%), Positives = 138/190 (72%), Gaps = 3/190 (1%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V + + + + V+GPRG L RDF H+N++ L+ + K++L++
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I N +EIRNF
Sbjct: 58 DEWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +R+V M GV S KDEL+L GNDIELVS SAALI Q VKNKDIRKFLD
Sbjct: 118 LGEKYIRRVRMRPGVACSVSQAQKDELILGGNDIELVSNSAALIQQATTVKNKDIRKFLD 177
Query: 181 GIYVSEKSTI 190
GIYVSEK T+
Sbjct: 178 GIYVSEKGTV 187
>sp|P50882|RL9_DROME 60S ribosomal protein L9 OS=Drosophila melanogaster GN=RpL9 PE=1
SV=2
Length = 190
Score = 224 bits (570), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 110/194 (56%), Positives = 140/194 (72%), Gaps = 5/194 (2%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
M+TI S++ + IP +K + A+V+ + G RG L R FKHL LD + M D KR LK+
Sbjct: 1 MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMY-MPD----KRTLKV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
+ WFG++K AA+RT SH+ N+I GVT G++YKMR VYAHFPIN NN IEIRNF
Sbjct: 56 EKWFGTKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNF 115
Query: 121 LGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +R+V+M GVTV+ S KDEL+++GNDIE VS SAALI Q VKNKDIRKFLD
Sbjct: 116 LGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKDIRKFLD 175
Query: 181 GIYVSEKSTILGEE 194
G+YVSEK+T++ E
Sbjct: 176 GLYVSEKTTVVKLE 189
>sp|Q963B7|RL9_SPOFR 60S ribosomal protein L9 OS=Spodoptera frugiperda GN=RpL9 PE=2 SV=1
Length = 190
Score = 222 bits (566), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 106/190 (55%), Positives = 140/190 (73%), Gaps = 5/190 (2%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK I++++ + IP+G+ V + ++++ V+GPRG L R+FKHL +D ++ R LK+
Sbjct: 1 MKQIVANQKVKIPEGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RVLKV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
+ WFGS+K AA+RT SHV N+I GVTKG++YKMR VYAHFPIN N IEIRNF
Sbjct: 56 EKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRSVYAHFPINCVTTEGNSVIEIRNF 115
Query: 121 LGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +R+V M GVTV+ S K KDEL+++GN +E VS SAALI Q VKNKDIRKFLD
Sbjct: 116 LGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLD 175
Query: 181 GIYVSEKSTI 190
G+YVSEK+T+
Sbjct: 176 GLYVSEKTTV 185
>sp|Q54XI5|RL9_DICDI 60S ribosomal protein L9 OS=Dictyostelium discoideum GN=rpl9 PE=1
SV=2
Length = 188
Score = 211 bits (536), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 98/190 (51%), Positives = 138/190 (72%), Gaps = 5/190 (2%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK I SS + IP+ V V + + ++V GPRG LS+ F H ++D +L+ GK++L +
Sbjct: 1 MKVINSSRKVQIPENVTVDVKGRSVKVTGPRGTLSKSFDHASVDINLV-----GKKELTV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
D WFG+RK A I+T S + N+ITGVTKGY YKMRFVYAHFPIN ++ + + +EIRNF
Sbjct: 56 DLWFGNRKQIACIKTITSIIENMITGVTKGYEYKMRFVYAHFPINVAVTDGGRVVEIRNF 115
Query: 121 LGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
GEK VR++++LDG+T R++K KDE+VL GN +EL+S+S A I + +K KD+RKFLD
Sbjct: 116 FGEKIVRRIELLDGITCYRNEKAKDEIVLTGNSLELLSQSCATIQLRSAIKYKDVRKFLD 175
Query: 181 GIYVSEKSTI 190
GIYVSE++ +
Sbjct: 176 GIYVSERNVL 185
>sp|Q95Y90|RL9_CAEEL 60S ribosomal protein L9 OS=Caenorhabditis elegans GN=rpl-9 PE=1
SV=1
Length = 189
Score = 209 bits (533), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 100/191 (52%), Positives = 136/191 (71%), Gaps = 5/191 (2%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK I S++T+ P+GV + +++ V GPRG + +DF+HL+++ E GK L++
Sbjct: 1 MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEM-----ERIGKSTLRV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
WFG RK AAIRT SH+ N+I GVT G+RYKMR VYAHFPIN ++ + N+ +EIRNF
Sbjct: 56 RKWFGVRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNF 115
Query: 121 LGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK VR+V + +GV S KDE+V++GND++ VS++AA I Q VK KDIRKFLD
Sbjct: 116 LGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLD 175
Query: 181 GIYVSEKSTIL 191
GIYVSEK+TI+
Sbjct: 176 GIYVSEKTTIV 186
>sp|P51401|RL9B_YEAST 60S ribosomal protein L9-B OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL9B PE=1 SV=1
Length = 191
Score = 192 bits (489), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/193 (51%), Positives = 137/193 (70%), Gaps = 7/193 (3%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK I + + ++IP+GV V I +++++V GPRG L+++ KH+++ F + + +K+
Sbjct: 1 MKYIQTEQQIEIPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTF-----TKVNNQLIKV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKA--IEIR 118
G RK AA+RT S V N+ITGVTKGY+YKMR+VYAHFPIN +I + A IE+R
Sbjct: 56 AVHNGDRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVR 115
Query: 119 NFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKF 178
NFLG+KK+R V + DGVT+ S VKDE+VL GN +E VS++AA + Q C V+NKDIRKF
Sbjct: 116 NFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKF 175
Query: 179 LDGIYVSEKSTIL 191
LDGIYVS K I+
Sbjct: 176 LDGIYVSHKGFIV 188
>sp|O74905|RL9B_SCHPO 60S ribosomal protein L9-B OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl9b PE=3 SV=1
Length = 189
Score = 192 bits (488), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/189 (50%), Positives = 130/189 (68%), Gaps = 6/189 (3%)
Query: 2 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKID 61
+ I ET+ IP+GV V I A+++ V+GPRG L ++ + ++++ + +K
Sbjct: 3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQGN------TIKFI 56
Query: 62 AWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFL 121
W GSRK +A IRTA S + N+I GVT+G+RYKMR VYAHFPIN ++ N +EIRNFL
Sbjct: 57 VWHGSRKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFL 116
Query: 122 GEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDG 181
GE+ R + L GVTV S VKDE++++GN +E VS+SAA I Q C+V+NKDIRKFLDG
Sbjct: 117 GERITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDG 176
Query: 182 IYVSEKSTI 190
IYVSE+ I
Sbjct: 177 IYVSERGNI 185
>sp|P05738|RL9A_YEAST 60S ribosomal protein L9-A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL9A PE=1 SV=2
Length = 191
Score = 191 bits (486), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/192 (51%), Positives = 136/192 (70%), Gaps = 7/192 (3%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK I + + +++P+GV V I +++++V GPRG L+++ KH+++ F + + +K+
Sbjct: 1 MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTF-----TKVNNQLIKV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKA--IEIR 118
G RK AA+RT S V N+ITGVTKGY+YKMR+VYAHFPIN +I + A IE+R
Sbjct: 56 AVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVR 115
Query: 119 NFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKF 178
NFLG+KK+R V + DGVT+ S VKDE+VL GN +E VS++AA + Q C V+NKDIRKF
Sbjct: 116 NFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKF 175
Query: 179 LDGIYVSEKSTI 190
LDGIYVS K I
Sbjct: 176 LDGIYVSHKGFI 187
>sp|Q10232|RL9A_SCHPO 60S ribosomal protein L9-A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl9a PE=3 SV=1
Length = 190
Score = 190 bits (483), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 95/189 (50%), Positives = 127/189 (67%), Gaps = 6/189 (3%)
Query: 2 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKID 61
+ I ET+ IP GV V I A+ + V GPRG L ++ +H++++ + +K
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQGN------TIKFI 56
Query: 62 AWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFL 121
W GSRK +A IR+ S + N+I GVT+G+RYKMR VYAHFPIN ++ N +EIRNFL
Sbjct: 57 VWHGSRKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFL 116
Query: 122 GEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDG 181
GE+ R + L GVTV S VKDE++L+GN +E VS+SAA I Q C+V+NKDIRKFLDG
Sbjct: 117 GERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDG 176
Query: 182 IYVSEKSTI 190
IYVSE+ I
Sbjct: 177 IYVSERGNI 185
>sp|Q22AX5|RL9_TETTS 60S ribosomal protein L9 OS=Tetrahymena thermophila (strain SB210)
GN=RPL9 PE=1 SV=1
Length = 188
Score = 169 bits (428), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 125/193 (64%), Gaps = 5/193 (2%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
M+ +L+ + IPD V + +V+EV+GP G + R F++ ++D T + +K+
Sbjct: 1 MRHLLTEVNVPIPDKVTITAKQRVVEVKGPLGTIKRAFRYASVDIQKPTADN-----VKL 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
W SRK A +++ S + N+I GVT+GY++KM+ +AHFPI ++ + +IEI++F
Sbjct: 56 QIWQASRKERAVLQSIASQIKNMIRGVTEGYKFKMKLAFAHFPIQEAVAKDGSSIEIKHF 115
Query: 121 LGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK++R++ L GV + R D+ K+ L L G D+ VS++ ALI+Q C VK KDIR+FLD
Sbjct: 116 LGEKRIRRIQALPGVKISRKDEEKNTLTLQGIDLNNVSQTCALIHQSCLVKEKDIRQFLD 175
Query: 181 GIYVSEKSTILGE 193
GIYVS+K + E
Sbjct: 176 GIYVSDKRLAMNE 188
>sp|A2BMD5|RL6_HYPBU 50S ribosomal protein L6P OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=rpl6p PE=3 SV=1
Length = 186
Score = 154 bits (388), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 125/190 (65%), Gaps = 10/190 (5%)
Query: 2 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHL-NLDFHLMTDEETGKRKLKI 60
K + +E + +P+GV+V I+ + V+GP+G+L+RDF H N+ L DEE +K+ +
Sbjct: 3 KAVYVAEEVRVPEGVEVSIDGLKVTVKGPKGELTRDFSHARNIVIRLDEDEEG--KKVVV 60
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
+A+F +R+ A + T +H+ N+ITGVTKG+RYK++ VY+HFP+ + + IE NF
Sbjct: 61 EAYFANRRVKALVGTIAAHIENMITGVTKGFRYKLKIVYSHFPVTVKVQGDKVVIE--NF 118
Query: 121 LGEKKVRKVDMLDGVTVIRSDKV-KDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFL 179
LGEK R ++ GVTV KV KD+++++G DIE V ++AA I Q VK+KD R F+
Sbjct: 119 LGEKAPRIAKIMPGVTV----KVQKDDVIVEGIDIEAVGQTAANIEQATKVKDKDRRVFI 174
Query: 180 DGIYVSEKST 189
DGIY+ EK
Sbjct: 175 DGIYIYEKGV 184
>sp|O02376|RL9_HAECO 60S ribosomal protein L9 (Fragment) OS=Haemonchus contortus PE=2
SV=1
Length = 141
Score = 150 bits (379), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 69/131 (52%), Positives = 92/131 (70%), Gaps = 5/131 (3%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK + S++T+D PDGV + +V+ V GPRG L RDF+HL+++ E GK +L++
Sbjct: 1 MKLVESNDTVDFPDGVTFTVKNRVVHVTGPRGTLKRDFRHLHMEM-----ERVGKNQLRV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
WFG RK AAIRT SH+ N+I GVTKG+RYKMR VYAHFPIN ++ + + +EIRNF
Sbjct: 56 RKWFGVRKEIAAIRTVCSHIQNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIRNF 115
Query: 121 LGEKKVRKVDM 131
LGEK VR V +
Sbjct: 116 LGEKIVRPVPL 126
>sp|B8D5V4|RL6_DESK1 50S ribosomal protein L6P OS=Desulfurococcus kamchatkensis (strain
1221n / DSM 18924) GN=rpl6p PE=3 SV=1
Length = 184
Score = 131 bits (330), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 7 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGS 66
+E ++IP+ V V+++ + V+GP+G ++RDF H F + D R + ++ +
Sbjct: 8 AEKVEIPENVAVEVDGLRVTVKGPKGIITRDFSHARGVFIRLED-----RVVIVETFVAD 62
Query: 67 RKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKV 126
RK A + T +H+ N+ITGV +GYRYK++ +++HFPI S+ NK + IRNF+GEK
Sbjct: 63 RKQKALVGTIAAHIRNMITGVVRGYRYKLKIIFSHFPITVSVDEKNKVVRIRNFMGEKSD 122
Query: 127 RKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
R + V V S ++++++G DIE V +AA I + V ++D R F+DGIY+ E
Sbjct: 123 RIAKIYGNVKVKVSG---EDIIIEGVDIEEVGLTAASIERATRVTDRDRRVFMDGIYIYE 179
Query: 187 KSTIL 191
K L
Sbjct: 180 KGEAL 184
>sp|A8AC04|RL6_IGNH4 50S ribosomal protein L6P OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=rpl6p PE=3 SV=1
Length = 186
Score = 131 bits (329), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 107/167 (64%), Gaps = 8/167 (4%)
Query: 25 IEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLI 84
++V GP+G+L RDF H + EE GK+++ ++ +F +RK A + T +H+ N+I
Sbjct: 26 VKVRGPKGELERDFSHAK-GIRIRVVEEEGKKQVLVETFFANRKRKALVNTVAAHIKNMI 84
Query: 85 TGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK 144
TGVTKG+RYKM+ V++HFPI+ + + +EI NF+GEK R +L GVTV KV+
Sbjct: 85 TGVTKGWRYKMKIVFSHFPISVKVVGDR--VEIHNFIGEKAPRVAKVLPGVTV----KVQ 138
Query: 145 D-ELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 190
+++++G DIE V+++AA I Q + D R F+DGIY+ + +
Sbjct: 139 GRDVIIEGTDIEKVAQTAANIEQATKITEFDRRVFMDGIYIYAREVM 185
>sp|A3DNC3|RL6_STAMF 50S ribosomal protein L6P OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=rpl6p PE=3 SV=1
Length = 185
Score = 127 bits (318), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 115/187 (61%), Gaps = 11/187 (5%)
Query: 8 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E +DIP+ V V+IN ++V GP+G + RDF H+ +++ +E K + ++ +F R
Sbjct: 9 EEIDIPENVTVEINGLKVKVNGPKGSIERDFSHVR---NIILRKENSK--IIVETFFADR 63
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVR 127
+ A + T SH+ N+I GV KGYRYK++ +Y+HFPI + + N+ + I+NFLGEK R
Sbjct: 64 RKKALVGTIASHIENMIKGVLKGYRYKLKIIYSHFPITVEVDDRNRIVRIKNFLGEKSDR 123
Query: 128 KVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 187
++ G V + K +D ++++G DIE V ++AA I VK+KD R F DGIY+ +
Sbjct: 124 IAKII-GEDVKVTVKGED-IIVEGIDIEHVGQTAANIELATKVKDKDRRVFADGIYIYD- 180
Query: 188 STILGEE 194
GEE
Sbjct: 181 ---WGEE 184
>sp|Q975J6|RL6_SULTO 50S ribosomal protein L6P OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rpl6p PE=3 SV=1
Length = 186
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 113/195 (57%), Gaps = 12/195 (6%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK + E ++IP G+ V I I+V+GP+G++ +DF H++ + ++ K+ +
Sbjct: 1 MKAVHLYEEIEIPQGINVNIEGMKIKVKGPKGEIEKDFSHIS-GIEIRKED----NKIVV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
+ F R+ A + ++H+ N+ TGVTKGYRY ++ +Y HFP+ + N ++I+N
Sbjct: 56 ETTFADRRKKAQFYSIIAHIENMFTGVTKGYRYYLKIIYTHFPVTVKVSGNE--VQIQNL 113
Query: 121 LGEKKVRKVDMLDGVTVIRSDKVKDE-LVLDGNDIELVSRSAALINQKCHVKNKDIRKFL 179
+GEK +R+ ++ GV V VK E ++++G DIE V ++AA I + D R F
Sbjct: 114 IGEKNIRRAKIMTGVKV----NVKGEDIIVEGQDIEKVGQTAANIELASKITGYDRRVFA 169
Query: 180 DGIYVSEKSTILGEE 194
DGIY+ +K I E+
Sbjct: 170 DGIYIYKKEVIGSEQ 184
>sp|Q5JJG4|RL6_PYRKO 50S ribosomal protein L6P OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rpl6p PE=3 SV=1
Length = 184
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 111/182 (60%), Gaps = 13/182 (7%)
Query: 8 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV+V + ++V+GP+G+L R+ K+ + + T++ K+ I F +
Sbjct: 9 EEIEIPEGVEVTVEGNTVKVKGPKGELQRELKYPGV--QIFTED----GKVVIYKEFPRK 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVR 127
K A +RT +H+ N+I GVT+G++Y+++ VY+HFP+ + + IE NFLGEK R
Sbjct: 63 KDVAIVRTFKAHINNMIKGVTEGFKYRLKVVYSHFPMTVKVQGDEVVIE--NFLGEKNPR 120
Query: 128 KVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
+ +L GVTV KVK E+ ++G D E V ++AA I Q + D R F DGIY+ E
Sbjct: 121 RAKILPGVTV----KVKGSEIEVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVE 176
Query: 187 KS 188
K+
Sbjct: 177 KA 178
>sp|Q9V1V1|RL6_PYRAB 50S ribosomal protein L6P OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rpl6p PE=3 SV=1
Length = 184
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 108/182 (59%), Gaps = 13/182 (7%)
Query: 8 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV+V + ++V+GP+G++ R+ + + E GK + D F R
Sbjct: 9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFV----EGGKVVIYKD--FPRR 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVR 127
K A +RT +H+ N+I GVT+G+ YK++ VY+HFPI + + IE NFLGEK R
Sbjct: 63 KDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPR 120
Query: 128 KVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
+ +L GVTV KVK E++++G D E V ++AA I Q + D R F DGIY+ E
Sbjct: 121 RAKILPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVE 176
Query: 187 KS 188
K+
Sbjct: 177 KA 178
>sp|B6YSN0|RL6_THEON 50S ribosomal protein L6P OS=Thermococcus onnurineus (strain NA1)
GN=rpl6p PE=3 SV=1
Length = 184
Score = 120 bits (302), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 108/181 (59%), Gaps = 11/181 (6%)
Query: 8 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV+V I V++V GP+G+L R+ K+ + + T++ K+ I F +
Sbjct: 9 EEVEIPEGVEVTIERNVVKVRGPKGELERELKYPGV--QIFTED----GKVVIYKEFPRK 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVR 127
K A RT +H+ N+I GVT+G+ YK++ VY+HFP+ + + IE NFLGEK R
Sbjct: 63 KDIAIARTFKAHIANMIKGVTEGFTYKLKVVYSHFPMTVKVQGDEVVIE--NFLGEKNPR 120
Query: 128 KVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 187
+ +L GVTV + E++++G D E V ++AA I Q + D R F DGIY+ EK
Sbjct: 121 RAKILPGVTV---KVMGSEVIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
Query: 188 S 188
+
Sbjct: 178 A 178
>sp|Q9YF91|RL6_AERPE 50S ribosomal protein L6P OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpl6p PE=3
SV=1
Length = 182
Score = 120 bits (301), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 111/184 (60%), Gaps = 12/184 (6%)
Query: 8 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E +++P+GV V I+ ++V GP+G++ RDF H + D + ++++F
Sbjct: 9 ERVEVPEGVTVSIDGMRVKVSGPKGEVERDFSHARGVLIRLEDNS-----VVVESFFAKA 63
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVR 127
+ A + H+ N+I GV G+RYK++ +Y+HFPIN + +K I I NFLGEK +R
Sbjct: 64 RQRALVGAIAGHIRNMIKGVQGGFRYKLKIMYSHFPINVKV-EGDKFI-ISNFLGEKGLR 121
Query: 128 KVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
++ GV V +VK +++++G D+E V+++AA I VK+KD RKF+DGIY+ E
Sbjct: 122 IARIMPGVKV----QVKGSDVIVEGIDVEKVAQTAANIELATKVKDKDRRKFMDGIYIYE 177
Query: 187 KSTI 190
+ I
Sbjct: 178 REVI 181
>sp|Q8U015|RL6_PYRFU 50S ribosomal protein L6P OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rpl6p PE=1 SV=1
Length = 184
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 107/182 (58%), Gaps = 13/182 (7%)
Query: 8 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV+V + ++V+GP+G+L R+F + E G + D F R
Sbjct: 9 EEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFT----EDGNVVIYKD--FPRR 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVR 127
K A RT +H+ N+I GVT+G+ YK++ VY+HFPI+ + + IE NFLGEK R
Sbjct: 63 KDVAIARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPISVKVQGDEVIIE--NFLGEKAPR 120
Query: 128 KVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
K +L GVTV KV+ E++++G D E V ++AA I Q + D R F DGIY+ E
Sbjct: 121 KAKILPGVTV----KVRGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRIFQDGIYIVE 176
Query: 187 KS 188
K+
Sbjct: 177 KA 178
>sp|A6VH01|RL6_METM7 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=rpl6p PE=3 SV=1
Length = 182
Score = 117 bits (292), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 102/184 (55%), Gaps = 11/184 (5%)
Query: 5 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
L E ++IP+ V V++N + V+ +L RD + ++ T K+ I+ F
Sbjct: 6 LIREEIEIPENVNVEVNGSTVAVKSGAKELKRDLLYPGIEIS------TEDGKVVIECTF 59
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEK 124
+ +A + T SH+ N+ITGVT G+ YK+ YAHFP+ S N + I NFLGEK
Sbjct: 60 PRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGNT--VTIDNFLGEK 117
Query: 125 KVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 184
R ++DGVTV S +E+++ G + E V ++AA I Q VK +D R F DGIY+
Sbjct: 118 YTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYI 174
Query: 185 SEKS 188
EK+
Sbjct: 175 VEKA 178
>sp|A4FWA5|RL6_METM5 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=rpl6p PE=3 SV=1
Length = 182
Score = 116 bits (291), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 102/184 (55%), Gaps = 11/184 (5%)
Query: 5 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
L E ++IP+ V V+IN + V+ +L RD + ++ T K+ I+ F
Sbjct: 6 LIREEIEIPENVNVEINGNTVAVKSGAKELRRDLMYPGIEIS------TEDGKVVIECTF 59
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEK 124
+ +A + T SH+ N+ITGVT G+ YK+ YAHFP+ S N + I NFLGEK
Sbjct: 60 PRKVQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGNT--VTIDNFLGEK 117
Query: 125 KVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 184
R ++DGVTV S +E+++ G + E V ++AA I Q VK +D R F DGIY+
Sbjct: 118 YTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYI 174
Query: 185 SEKS 188
EK+
Sbjct: 175 VEKA 178
>sp|Q2FSG5|RL6_METHJ 50S ribosomal protein L6P OS=Methanospirillum hungatei (strain JF-1
/ DSM 864) GN=rpl6p PE=3 SV=1
Length = 176
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 99/180 (55%), Gaps = 13/180 (7%)
Query: 10 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKT 69
+ IP GV V ++ V+ V+GP+G L RD + ++ + G ++ +
Sbjct: 7 VSIPSGVSVTMDGTVLHVKGPKGNLQRDMWYPGIEITI------GSEDVRFTTESQKKAV 60
Query: 70 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKV 129
++ + T SH N+ TGVTKGY Y M+ VY+HFPI + + +EI NFLGEK R
Sbjct: 61 TSMVGTLASHCSNMCTGVTKGYLYSMKVVYSHFPIQIKV--VGETLEIVNFLGEKYPRSA 118
Query: 130 DMLDGVTVIRSDKV-KDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 188
+L G TV KV DE+ + G D E+V +AA I + ++++D R F DGIY+ +S
Sbjct: 119 RILPGTTV----KVGSDEVTVTGIDKEVVGSTAANIERATRIRDRDPRVFQDGIYIVSRS 174
>sp|A0B9V4|RL6_METTP 50S ribosomal protein L6P OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=rpl6p PE=3 SV=1
Length = 176
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 108/178 (60%), Gaps = 11/178 (6%)
Query: 10 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKT 69
+DIPDGV V+I+ + + V+GP+G+LSR+ + +++ + E++ K+ I + ++
Sbjct: 9 LDIPDGVDVQISGRSVRVKGPKGELSRELWYPDIE---IKREDS---KILIRSVARKKQH 62
Query: 70 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKV 129
A + T +H+ N+I GVT G+ Y+MR VY+HFPI + + AI NFLGE+K R
Sbjct: 63 LAMVGTIAAHIKNMIRGVTDGFEYRMRVVYSHFPIQVKVADGKVAIS--NFLGERKPRFA 120
Query: 130 DMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 187
++ V V + KDE+++ G D E V ++ A I Q V+ D+R F DGIY+ EK
Sbjct: 121 TIVGDVNV---EVGKDEILIRGMDKEAVGQTMANIEQATRVRGFDVRIFQDGIYLVEK 175
>sp|Q9UX91|RL6_SULSO 50S ribosomal protein L6P OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rpl6p PE=3 SV=1
Length = 181
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 113/196 (57%), Gaps = 22/196 (11%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFK-----HLNLDFHLMTDEETGK 55
M+ ++ E ++IP V V + +I+++GP+G++ +DF ++LD +
Sbjct: 1 MQIVILREEIEIPKNVVVDLKGSIIKIKGPKGEVVKDFSFAKGIQISLDGN--------- 51
Query: 56 RKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAI 115
K+ ++ F +R+ A + +SH+ N+ITGVTKGYRY ++ +Y HFP + + N +
Sbjct: 52 -KIVLETTFANRRKKAVFYSIVSHIKNMITGVTKGYRYYLKIIYTHFPTSVKVVGNE--V 108
Query: 116 EIRNFLGEKKVRKVDMLDGVTVIRSDKVKDE-LVLDGNDIELVSRSAALINQKCHVKNKD 174
+I N +GEK R+ +L+GV V VK E +V++G ++E V+++AA I + D
Sbjct: 109 QITNLIGEKNTRRAQILEGVKV----TVKGEDIVVEGPNLEAVAQTAANIESASKISGFD 164
Query: 175 IRKFLDGIYVSEKSTI 190
R F DGI++ +K I
Sbjct: 165 RRIFSDGIFIYKKEVI 180
>sp|Q0W1X2|RL6_UNCMA 50S ribosomal protein L6P OS=Uncultured methanogenic archaeon RC-I
GN=rpl6p PE=3 SV=1
Length = 177
Score = 114 bits (286), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 105/180 (58%), Gaps = 12/180 (6%)
Query: 10 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKT 69
+++P GV V ++ + +G +G++SR+F+ + T K+ ++ ++T
Sbjct: 9 IEVPQGVTVTVSGATLTTKGQKGQISREFRFPGISVR------TDGGKVIVETGKDDKQT 62
Query: 70 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKV 129
A + T SH+ N++TGV++GY Y M+ VYAHFPI + +K + I NFLGE+K R
Sbjct: 63 KATVGTYASHIKNMMTGVSEGYEYHMKIVYAHFPIQVKVEGKDK-VTIGNFLGERKARTA 121
Query: 130 DMLDGVTV-IRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 188
+++ V ++ DKV VL G + E + ++AA I Q C ++ +D R F DGIY++ K+
Sbjct: 122 NIVGETKVTVQGDKV----VLTGINKEDLGQTAANIEQACRIRKRDPRVFQDGIYITSKA 177
>sp|O59433|RL6_PYRHO 50S ribosomal protein L6P OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl6p PE=3 SV=2
Length = 184
Score = 114 bits (284), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 106/182 (58%), Gaps = 13/182 (7%)
Query: 8 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV+V + ++V+GP+G++ + + + E GK + D F R
Sbjct: 9 EEIEIPEGVEVSVQDYNVKVKGPKGEVEKKLFWPGVKIFV----EDGKVVIYKD--FPRR 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVR 127
K A +RT +H+ N+I GVT+G+ YK++ VY+HFPI + + IE NFLGEK R
Sbjct: 63 KDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPR 120
Query: 128 KVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
+ +L GVTV KVK E++++G D E ++AA I Q + D R F DGIY+ E
Sbjct: 121 RAKILPGVTV----KVKGQEIIVEGIDKEATGQTAANIEQATRITKWDRRVFQDGIYIVE 176
Query: 187 KS 188
K+
Sbjct: 177 KA 178
>sp|Q6LXD7|RL6_METMP 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain S2 /
LL) GN=rpl6p PE=3 SV=1
Length = 182
Score = 114 bits (284), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 102/184 (55%), Gaps = 11/184 (5%)
Query: 5 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
L E ++IP+ V V+IN + V+ +L R+ + ++ T K+ I+ F
Sbjct: 6 LIREEIEIPENVNVEINGSTVVVKSGAKELKRELMYPGIEIS------TEDGKVVIECAF 59
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEK 124
+ +A + T SH+ N+ITGVT G+ YK+ YAHFP+ S N + I NFLGEK
Sbjct: 60 PRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGNT--VMIDNFLGEK 117
Query: 125 KVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 184
R ++DGVTV S +++V+ G + E V ++AA I Q VK +D R F DGIY+
Sbjct: 118 YTRTAKIMDGVTVKVSG---EDVVVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYI 174
Query: 185 SEKS 188
EK+
Sbjct: 175 VEKA 178
>sp|A9A9P8|RL6_METM6 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=rpl6p PE=3 SV=1
Length = 182
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 100/184 (54%), Gaps = 11/184 (5%)
Query: 5 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
L E ++IP V V+IN + V+ +L RD + ++ T K+ I+ F
Sbjct: 6 LIREEIEIPANVNVEINGNTVAVKSGAKELKRDLLYPGIEIS------TEDGKVVIECTF 59
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEK 124
+ +A + T SH+ N+I GVT G+ YK+ YAHFP+ S N + I NFLGEK
Sbjct: 60 PRKAQTAIVGTYRSHIQNMIKGVTDGFEYKLVIRYAHFPMKVSAKGNT--VMIDNFLGEK 117
Query: 125 KVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 184
R ++DGVTV S +E+++ G + E V ++AA I Q VK +D R F DGIY+
Sbjct: 118 YTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYI 174
Query: 185 SEKS 188
EK+
Sbjct: 175 VEKA 178
>sp|O26127|RL6_METTH 50S ribosomal protein L6P OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=rpl6p PE=3 SV=1
Length = 177
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 103/184 (55%), Gaps = 14/184 (7%)
Query: 5 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
L E + IPDGV V I+ V V+GP+ +LSR F H + + D K+ ++ F
Sbjct: 6 LIREEIPIPDGVDVTIDGGVT-VKGPKWELSRKFNHSEISMAVEDD------KVVLEVKF 58
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEK 124
+K A I T +H+ N+ITGVT+G+RY+M+ VYAHFP++ + + IE NFLGE+
Sbjct: 59 PKKKDKAMIGTVRAHISNMITGVTEGFRYRMKIVYAHFPMSVKVAGDKVVIE--NFLGER 116
Query: 125 KVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 183
R + V +VK DE+ + G + E V ++ A I Q +K +D R F DGIY
Sbjct: 117 HPRTARFVGDTKV----QVKGDEVEITGINKEHVGQTMANIEQATKIKGRDPRVFQDGIY 172
Query: 184 VSEK 187
+ K
Sbjct: 173 LVSK 176
>sp|P54042|RL6_METJA 50S ribosomal protein L6P OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rpl6p PE=3 SV=1
Length = 182
Score = 110 bits (274), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 103/182 (56%), Gaps = 11/182 (6%)
Query: 7 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGS 66
E + IP+ V+V+IN + V+ +L R F+H + DE + I +
Sbjct: 8 EERVKIPENVQVEINNNEVVVKSGGKELRRRFEHPKIVIKKEGDE------IVIFCEYPR 61
Query: 67 RKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKV 126
RK A + T +H+ N+I GVT+G+ YK++ YAHFP+ S+ N IE NFLGEK
Sbjct: 62 RKDKAMVGTIRAHINNMIKGVTEGFTYKLKIRYAHFPMKVSVKGNEVIIE--NFLGEKHP 119
Query: 127 RKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
R+ +++GVTV S +++++ G D E V ++AA I Q +K +D R F DGIY+ E
Sbjct: 120 RRARIMEGVTVKISG---EDVIVTGIDKEKVGQTAANIEQATRIKGRDPRVFQDGIYIVE 176
Query: 187 KS 188
K+
Sbjct: 177 KA 178
>sp|C5A269|RL6_THEGJ 50S ribosomal protein L6P OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=rpl6p PE=3 SV=1
Length = 184
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 107/182 (58%), Gaps = 13/182 (7%)
Query: 8 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV+V + V++V+GP+G+L R+ K+ + T K+ + F +
Sbjct: 9 EEVEIPEGVEVTVENNVVKVKGPKGELERELKYPGVKIF------TEDGKVVVYKEFPRK 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVR 127
K A RT +H+ N+I GVT+G+ YK++ VY+HFP+ + + IE NFLGEK R
Sbjct: 63 KDIAIARTFKAHINNMIKGVTEGFTYKLKVVYSHFPVTVKVQGDEVIIE--NFLGEKNPR 120
Query: 128 KVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
+ +L GVTV KV+ E+ ++G D E V ++AA I Q + D R F DGIY+ E
Sbjct: 121 RAKILPGVTV----KVRGQEITVEGIDKEKVGQTAANIEQATRITKWDRRVFQDGIYIVE 176
Query: 187 KS 188
K+
Sbjct: 177 KA 178
>sp|A5UL72|RL6_METS3 50S ribosomal protein L6P OS=Methanobrevibacter smithii (strain PS
/ ATCC 35061 / DSM 861) GN=rpl6p PE=3 SV=1
Length = 178
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 101/180 (56%), Gaps = 11/180 (6%)
Query: 8 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV+V IN + V+GP G+ SR F + N+D +T+ E + ++ F +
Sbjct: 9 EEIEIPEGVEVIINNNEVTVKGPNGEDSRKFTYPNVD---ITEVE---NNVVLETSFPRK 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVR 127
K A I T +H+ N+ITGVT G+ Y M+ V+AHFP+ + N + I NFLGE+ R
Sbjct: 63 KDKAMIGTTKAHISNMITGVTDGFEYHMKIVFAHFPMTVKV--NKDVVVIDNFLGERHPR 120
Query: 128 KVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 187
++ V+ DE+ + G + E V ++ A + Q +K +D R F DGIY+ K
Sbjct: 121 TAKVVGSAKVVVKG---DEVTITGINKEHVGQTMANLEQATKIKGRDPRVFQDGIYLISK 177
>sp|O05637|RL6_SULAC 50S ribosomal protein L6P OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=rpl6p PE=3 SV=1
Length = 189
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 108/191 (56%), Gaps = 12/191 (6%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
+K E + IPD VKV + V++V+GP+G++ +DF + + +E K+ +
Sbjct: 4 LKAAYIREEIQIPDKVKVSLENNVLKVKGPKGEVIKDFSYAK-GIRIQLNEG----KIIL 58
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
+ F R+ A + + ++H+ N+ITG GYRY ++ + HFPI+ + + +++ N
Sbjct: 59 ETTFADRRKKALLYSIIAHIKNMITGTINGYRYYLKVISTHFPISVKVSGDE--VQVSNL 116
Query: 121 LGEKKVRKVDMLDGVTVIRSDKVKDE-LVLDGNDIELVSRSAALINQKCHVKNKDIRKFL 179
+GEK +R+ +L GV V VK E +V++G+DI V+++AA I + D R F
Sbjct: 117 IGEKNIRRAKILPGVKV----TVKGEDIVVEGSDIYNVAQTAANIESSTKIVGYDRRIFS 172
Query: 180 DGIYVSEKSTI 190
DGIY+ +K I
Sbjct: 173 DGIYIYKKEVI 183
>sp|Q8PV34|RL6_METMA 50S ribosomal protein L6P OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rpl6p PE=3 SV=1
Length = 176
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 100/182 (54%), Gaps = 11/182 (6%)
Query: 7 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGS 66
+ T++IP+GV V ++ V +GP+G + R F + + + E + +DA
Sbjct: 6 ARTIEIPEGVSVSLSQDVFTAKGPKGTVERTFWYPGIKIEVREGE------VVVDAESSR 59
Query: 67 RKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKV 126
++ A + T SH+ NLI GV++G+ KM VYAHFP+ + K + I NFLGEKK
Sbjct: 60 KEQKAMVGTFASHLKNLIIGVSEGFECKMNIVYAHFPMQVKV--EGKTLVIGNFLGEKKP 117
Query: 127 RKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
R +L V S +E+V+ G + E V ++AA I QK +K D R F DGIY+ +
Sbjct: 118 RIAKILGETKVKVSG---NEIVVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQ 174
Query: 187 KS 188
K+
Sbjct: 175 KA 176
>sp|Q18GG5|RL6_HALWD 50S ribosomal protein L6P OS=Haloquadratum walsbyi (strain DSM
16790) GN=rpl6p PE=3 SV=1
Length = 182
Score = 106 bits (265), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 102/187 (54%), Gaps = 15/187 (8%)
Query: 5 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
++ ++IP+ V +++ + VEGP G ++R + ++ + DE+ + I+
Sbjct: 1 MTRTAIEIPENVSAEVSNLALTVEGPNGSVTRTLWYPSVTVSV--DEDADADAVVIETDE 58
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEK 124
KTSA + T SHV N+I GVT G+ Y+M YAHFP+ S+ + IE NFLGEK
Sbjct: 59 TDAKTSATVGTFESHVSNMIHGVTDGWSYEMEVYYAHFPMQVSVEGDEVIIE--NFLGEK 116
Query: 125 KVRKVDMLDGVTVIRSD---KVKDELV-LDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
R+ T IR D ++ E+V L G E V ++AA I Q V +KD R F D
Sbjct: 117 ASRR-------TPIRGDTNVQIDGEMVTLTGPSKEDVGQTAADIEQLTRVTDKDTRIFQD 169
Query: 181 GIYVSEK 187
G+Y+++K
Sbjct: 170 GVYITQK 176
>sp|A6UQ60|RL6_METVS 50S ribosomal protein L6P OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=rpl6p PE=3 SV=1
Length = 182
Score = 104 bits (259), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 102/185 (55%), Gaps = 13/185 (7%)
Query: 5 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
L E ++IP V V++N + V+ L R+ ++ + + K+ +++ F
Sbjct: 6 LIREEIEIPGNVSVEVNGSEVVVKSGAKVLKRELAFPGIEIKMENE------KVVVESTF 59
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEK 124
+ +A + T SH+ N+I GV++G+ YK+ YAHFP+ + N I+ NFLGEK
Sbjct: 60 PKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGNTVIID--NFLGEK 117
Query: 125 KVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 183
R +++GVTV KV +E+++ G + E V ++AA I Q VK +D R F DGIY
Sbjct: 118 YPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIY 173
Query: 184 VSEKS 188
+ EK+
Sbjct: 174 IVEKA 178
>sp|P14030|RL6_METVA 50S ribosomal protein L6P OS=Methanococcus vannielii GN=rpl6p PE=3
SV=1
Length = 182
Score = 104 bits (259), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 102/185 (55%), Gaps = 13/185 (7%)
Query: 5 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
L E ++IP V V++N + V+ L R+ ++ + + K+ +++ F
Sbjct: 6 LIREEIEIPGNVSVEVNGSEVVVKSGAKVLKRELAFPGIEIKMENE------KVVVESTF 59
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEK 124
+ +A + T SH+ N+I GV++G+ YK+ YAHFP+ + N I+ NFLGEK
Sbjct: 60 PKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGNTVIID--NFLGEK 117
Query: 125 KVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 183
R +++GVTV KV +E+++ G + E V ++AA I Q VK +D R F DGIY
Sbjct: 118 YPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIY 173
Query: 184 VSEKS 188
+ EK+
Sbjct: 174 IVEKA 178
>sp|Q9HPB8|RL6_HALSA 50S ribosomal protein L6P OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=rpl6p PE=1 SV=3
Length = 178
Score = 104 bits (259), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 96/179 (53%), Gaps = 11/179 (6%)
Query: 10 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKT 69
++IPD V +++ + VEGP G ++R + ++D + D + + + KT
Sbjct: 6 IEIPDDVTAEVDHLDLTVEGPEGSVTRRLWYPDVDVSVEDD------AVVVASEVDDAKT 59
Query: 70 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKV 129
+ + T SHV N+ GV++G+ YK+ Y+HFP+ + + + I+NFLGEK R+
Sbjct: 60 DSTVGTFESHVANMFHGVSEGWEYKLEVHYSHFPMQVDV--EGEEVVIQNFLGEKAARRT 117
Query: 130 DMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 188
+ V+ D+ E+ L G IE V ++AA I Q V +KD R F DG+Y+ EK
Sbjct: 118 QIRGDTDVVVDDE---EVTLSGPSIEDVGQTAADIEQLTRVTDKDTRVFQDGVYIVEKP 173
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,621,807
Number of Sequences: 539616
Number of extensions: 2638468
Number of successful extensions: 8924
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 372
Number of HSP's that attempted gapping in prelim test: 8107
Number of HSP's gapped (non-prelim): 714
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)