Query 029362
Match_columns 194
No_of_seqs 150 out of 1052
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 11:42:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029362.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029362hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00179 60S ribosomal protein 100.0 1.8E-66 4E-71 428.4 22.6 184 4-193 3-188 (189)
2 PRK05518 rpl6p 50S ribosomal p 100.0 2.7E-66 5.8E-71 424.5 22.6 178 1-189 1-178 (180)
3 PTZ00027 60S ribosomal protein 100.0 5.1E-66 1.1E-70 426.1 23.6 189 1-193 1-189 (190)
4 TIGR03653 arch_L6P archaeal ri 100.0 1.2E-64 2.6E-69 411.5 22.4 170 7-187 1-170 (170)
5 COG0097 RplF Ribosomal protein 100.0 1.3E-57 2.9E-62 370.5 20.7 174 2-190 1-175 (178)
6 CHL00140 rpl6 ribosomal protei 100.0 2.9E-55 6.4E-60 359.0 21.8 169 3-188 2-173 (178)
7 TIGR03654 L6_bact ribosomal pr 100.0 3.9E-53 8.4E-58 345.6 22.4 168 3-187 1-171 (175)
8 PRK05498 rplF 50S ribosomal pr 100.0 6.7E-53 1.4E-57 345.0 22.4 170 2-188 1-173 (178)
9 KOG3254 Mitochondrial/chloropl 100.0 4.5E-44 9.7E-49 289.6 13.2 164 5-187 34-200 (211)
10 KOG3255 60S ribosomal protein 100.0 1.1E-29 2.4E-34 207.2 2.8 179 1-190 1-179 (179)
11 PF00347 Ribosomal_L6: Ribosom 99.8 6.5E-19 1.4E-23 124.6 7.4 74 12-90 1-77 (77)
12 PF00347 Ribosomal_L6: Ribosom 98.1 1.4E-06 3.1E-11 61.2 1.8 68 100-176 3-72 (77)
13 cd06479 ACD_HspB7_like Alpha c 60.7 25 0.00053 25.0 4.9 27 13-39 21-55 (81)
14 TIGR03653 arch_L6P archaeal ri 59.5 10 0.00022 30.9 3.1 21 9-29 114-134 (170)
15 COG0097 RplF Ribosomal protein 57.8 12 0.00026 31.0 3.2 32 8-39 113-145 (178)
16 cd02393 PNPase_KH Polynucleoti 54.7 32 0.00069 22.9 4.5 30 133-164 31-60 (61)
17 PF12970 DUF3858: Domain of Un 52.1 56 0.0012 25.2 5.9 34 7-40 40-73 (116)
18 PRK05518 rpl6p 50S ribosomal p 52.1 17 0.00036 30.0 3.2 25 9-33 120-144 (180)
19 PTZ00179 60S ribosomal protein 44.6 24 0.00052 29.2 3.1 14 156-169 67-80 (189)
20 CHL00140 rpl6 ribosomal protei 42.9 1.8E+02 0.004 23.6 9.1 57 105-169 16-77 (178)
21 PF00338 Ribosomal_S10: Riboso 38.6 68 0.0015 23.0 4.4 31 146-176 2-32 (97)
22 cd00298 ACD_sHsps_p23-like Thi 37.5 29 0.00064 22.3 2.1 20 13-32 19-38 (80)
23 cd06469 p23_DYX1C1_like p23_li 37.2 63 0.0014 21.7 3.9 28 13-40 19-46 (78)
24 cd06477 ACD_HspB3_Like Alpha c 36.6 23 0.00049 25.4 1.5 19 13-31 20-38 (83)
25 cd06480 ACD_HspB8_like Alpha-c 36.0 23 0.0005 25.9 1.5 19 13-31 28-46 (91)
26 cd06498 ACD_alphaB-crystallin_ 34.9 25 0.00054 25.0 1.5 18 13-30 20-37 (84)
27 cd06478 ACD_HspB4-5-6 Alpha-cr 34.9 29 0.00064 24.5 1.9 18 13-30 20-37 (83)
28 cd06476 ACD_HspB2_like Alpha c 34.1 26 0.00057 24.9 1.5 19 13-31 20-38 (83)
29 cd07429 Cby_like Chibby, a nuc 31.8 24 0.00051 26.9 1.0 14 176-189 52-65 (108)
30 COG1072 CoaA Panthothenate kin 31.6 35 0.00077 30.2 2.2 36 121-159 167-202 (283)
31 cd06497 ACD_alphaA-crystallin_ 31.0 31 0.00068 24.6 1.5 19 13-31 23-41 (86)
32 cd06481 ACD_HspB9_like Alpha c 30.9 35 0.00075 24.4 1.7 19 13-31 20-38 (87)
33 PRK14434 acylphosphatase; Prov 30.3 22 0.00048 25.9 0.6 55 96-168 11-66 (92)
34 PF14506 CppA_N: CppA N-termin 30.1 2.2E+02 0.0047 22.3 6.1 75 101-178 23-99 (125)
35 cd06526 metazoan_ACD Alpha-cry 28.8 37 0.00079 23.7 1.5 20 13-32 20-39 (83)
36 cd06482 ACD_HspB10 Alpha cryst 28.4 37 0.00081 24.5 1.5 18 13-30 21-38 (87)
37 TIGR03654 L6_bact ribosomal pr 28.0 3.3E+02 0.0071 22.1 10.1 57 105-169 15-76 (175)
38 cd06470 ACD_IbpA-B_like Alpha- 27.5 66 0.0014 22.8 2.7 19 13-31 24-42 (90)
39 cd06475 ACD_HspB1_like Alpha c 26.4 45 0.00097 23.7 1.7 18 13-30 23-40 (86)
40 PF10162 G8: G8 domain; Inter 26.3 1.8E+02 0.004 22.0 5.2 36 7-46 12-52 (125)
41 cd02394 vigilin_like_KH K homo 25.7 1.4E+02 0.0031 19.1 4.0 19 145-164 43-61 (62)
42 PF05137 PilN: Fimbrial assemb 25.5 1.2E+02 0.0027 20.1 3.7 41 130-170 9-51 (78)
43 COG0051 RpsJ Ribosomal protein 25.5 78 0.0017 23.9 2.8 33 144-176 5-37 (104)
44 PTZ00027 60S ribosomal protein 25.4 3.9E+02 0.0085 22.1 7.6 57 105-169 17-81 (190)
45 PF14287 DUF4368: Domain of un 24.4 42 0.00092 23.4 1.2 37 153-189 9-48 (71)
46 PRK14440 acylphosphatase; Prov 24.1 23 0.00049 25.7 -0.3 52 96-166 12-63 (90)
47 PRK14446 acylphosphatase; Prov 22.2 55 0.0012 23.7 1.4 20 146-166 43-62 (88)
48 PF04863 EGF_alliinase: Alliin 21.6 32 0.00069 23.2 0.1 8 176-183 24-31 (56)
49 PRK14424 acylphosphatase; Prov 21.4 33 0.00071 25.2 0.1 55 94-167 14-68 (94)
50 PRK14450 acylphosphatase; Prov 20.6 30 0.00064 25.0 -0.3 53 96-166 11-63 (91)
51 PRK14940 DNA polymerase III su 20.5 6.1E+02 0.013 22.6 10.3 47 7-61 24-70 (367)
52 PRK13036 superantigen-like pro 20.4 1.5E+02 0.0033 25.5 3.9 40 111-157 48-87 (227)
No 1
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=100.00 E-value=1.8e-66 Score=428.40 Aligned_cols=184 Identities=54% Similarity=0.927 Sum_probs=170.5
Q ss_pred ecceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEccccccCCcEEEEEeccCChhhhhHHHhHHHHHhhh
Q 029362 4 ILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNL 83 (194)
Q Consensus 4 ~~~~~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~Gt~rsli~Nm 83 (194)
++..+||.||+||+|+++++.|+|+||+|+|+++|++.++.+.+.. ++++|.+++|.++++.+|+|||+||||+||
T Consensus 3 ~~~~~pI~IP~~V~V~i~~~~ItVkGpkG~Ls~~~~~~~~~i~i~~----~~~~I~v~~~~~~kk~~al~Gt~rslI~NM 78 (189)
T PTZ00179 3 IKSQDTITIPEDVTVSVKDRIVTVKGKRGTLTKDLRHLQLDFRVNK----KNRTFTAVRWFGSKIPNSTINTALSHVRNM 78 (189)
T ss_pred ccccccEeCCCCCEEEEeCCEEEEECCCcEEEEEcCCCCcEEEEEe----cCCEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 4567799999999999999999999999999999999655555434 357899999999999999999999999999
Q ss_pred eeeeccceEEEEEEEEEEecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCC--CCcEEEEEeCcHhHHHHHH
Q 029362 84 ITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDK--VKDELVLDGNDIELVSRSA 161 (194)
Q Consensus 84 I~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~--~k~~i~l~G~Dkq~Vgq~A 161 (194)
|+|||+||+++|+++|+||||||++ +|+.|.|+|+||||||+.++||+|+++++++| .|++|+|+|+|||+|||||
T Consensus 79 I~GVt~GF~k~L~ivgvgyp~ra~v--~g~~l~l~N~LG~sh~~~~~ip~gv~v~~~~~~~~k~~i~i~G~DKq~Vgq~A 156 (189)
T PTZ00179 79 ITGVTKGFRFKVRFAYAHFPISVSV--ENQLVEIRNFLGEKRVRRQVVADTVKVYRTDPSKVKDELVLEGNDLEQVSREA 156 (189)
T ss_pred hhhhcCCEEEEEEEEEeCcceEEEE--cCCEEEEEecCCCCccEEEECCCCEEEEecCCcccCCEEEEEeCCHHHHHHHH
Confidence 9999999999999999999999999 89999999999999999999999999999965 3579999999999999999
Q ss_pred HHHhcccccCCCceeeeeceEEEeeeeeeecC
Q 029362 162 ALINQKCHVKNKDIRKFLDGIYVSEKSTILGE 193 (194)
Q Consensus 162 A~Ir~~~~~Kgkd~R~f~DGiyv~ek~~~~~~ 193 (194)
|+|++.|++|+||+|+|||||||++|++...+
T Consensus 157 A~i~~~~~~~~~d~r~f~dgiy~~~k~~~~~~ 188 (189)
T PTZ00179 157 AVMHQLCLVKKKDIRKFLDGIYVQTKTNVEAE 188 (189)
T ss_pred HHHHHhhcccCCCccEeecCEEEEEeeccccc
Confidence 99999999999999999999999999966544
No 2
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=100.00 E-value=2.7e-66 Score=424.46 Aligned_cols=178 Identities=39% Similarity=0.680 Sum_probs=169.7
Q ss_pred CceecceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEccccccCCcEEEEEeccCChhhhhHHHhHHHHH
Q 029362 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (194)
Q Consensus 1 M~~~~~~~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~Gt~rsli 80 (194)
|-.++.++||.||+||+|+++++.|+|+||+|+|+++|++..+++.++ ++.+.+++|+++++++|+|||+||||
T Consensus 1 ~~~~~~~~pI~IP~~V~v~i~~~~v~VkGp~G~L~~~~~~~~v~i~~~------~~~i~v~~~~~~kk~ra~~gt~rslI 74 (180)
T PRK05518 1 MVAAYIREEIEIPEGVTVEIEGLVVTVKGPKGELTRDFWYPGVTISVE------DGKVVIETEFARKKTKAMVGTFASHI 74 (180)
T ss_pred CccccccccEEcCCCCEEEEECCEEEEECCCeEEEEEecCCcEEEEEE------CCEEEEEECCCCHHHHHHHHHHHHHH
Confidence 677899999999999999999999999999999999998767888742 47899999999999999999999999
Q ss_pred hhheeeeccceEEEEEEEEEEecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHHHHH
Q 029362 81 GNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRS 160 (194)
Q Consensus 81 ~NmI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~Vgq~ 160 (194)
+|||+|||+||+++|+++|+||||||++ +|+.|.|+|+||||||+.++||+||++++++ |+|+|+|+|||+||||
T Consensus 75 ~NmI~GVt~Gf~~~LelvGvGypira~~--~g~~l~l~n~LG~Sh~v~~~iP~gV~v~~~~---t~I~i~GiDKq~Vgq~ 149 (180)
T PRK05518 75 KNMIKGVTEGFEYKLKIVYSHFPMQVKV--QGNEVVIENFLGEKSPRRAKILGGVKVKVKG---EDVIVEGIDKEDVGQT 149 (180)
T ss_pred HhhheecccceEEEEEEEecCccEEEEE--cCCEEEEEeccccceeEEEeCCCCeEEEecC---CEEEEEeCCHHHHHHH
Confidence 9999999999999999999999999999 7889999999999999999999999999986 8999999999999999
Q ss_pred HHHHhcccccCCCceeeeeceEEEeeeee
Q 029362 161 AALINQKCHVKNKDIRKFLDGIYVSEKST 189 (194)
Q Consensus 161 AA~Ir~~~~~Kgkd~R~f~DGiyv~ek~~ 189 (194)
||+||+.|+.|+||+|+|+|||||+||+.
T Consensus 150 AA~Ir~~~~~~~kd~r~f~dgiyv~~k~~ 178 (180)
T PRK05518 150 AANIEQATKIKGFDRRVFQDGIYIVEKEV 178 (180)
T ss_pred HHHHHHhhcccCCCCCEeecCEEEEEecc
Confidence 99999999999999999999999999984
No 3
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=100.00 E-value=5.1e-66 Score=426.09 Aligned_cols=189 Identities=57% Similarity=0.936 Sum_probs=172.6
Q ss_pred CceecceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEccccccCCcEEEEEeccCChhhhhHHHhHHHHH
Q 029362 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (194)
Q Consensus 1 M~~~~~~~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~Gt~rsli 80 (194)
|+.++...||.||+||+|+++++.|+|+||+|+|+++|+++++.+.+..+ ++.|.+++|.++++.+|+|||+||||
T Consensus 1 ~~~~~~~~~I~IP~~V~V~i~~~~v~VkGp~G~L~~~~~~~~~~i~i~~~----~~~i~v~~~~~~~k~~a~~Gt~rslI 76 (190)
T PTZ00027 1 MKTIFSSEKIRIPEGVTVTVKSRKVTVTGKYGELTRSFRHLPVDIKLSKD----GKYIKVEMWFGTPSHLACIRTVCSHI 76 (190)
T ss_pred CcccccCCCEecCCCCEEEEECCEEEEECCCceEEEEecCCCceEEEEeC----CCEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999985555554342 57899999999999999999999999
Q ss_pred hhheeeeccceEEEEEEEEEEecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHHHHH
Q 029362 81 GNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRS 160 (194)
Q Consensus 81 ~NmI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~Vgq~ 160 (194)
+|||+|||+||+++|+++|+|||+.+.++++|+.|.|+|+||||||+.++||+|++++++++.+|+|+|+|+|||+||||
T Consensus 77 ~NmI~GVt~Gf~~~LeivGvGyra~~~v~~~g~~L~l~N~LG~Sh~i~~~iP~gv~v~~~~~~~t~I~i~G~DKq~Vgq~ 156 (190)
T PTZ00027 77 KNMMTGVTKKFQYKMRLVYAHFPINSNITDNGKTIEIRNFLGEKRVRTVKMLPGVVVEKSESVKDEIIVTGADLELVSRS 156 (190)
T ss_pred HHHhhhhcCCEEEEEEEEEeeeeEEEEEcCCCCEEEEEccCCCceeEEEECCCCeEEEeCCCCCCEEEEEeCCHHHHHHH
Confidence 99999999999999999999995433376689999999999999999999999999999986568999999999999999
Q ss_pred HHHHhcccccCCCceeeeeceEEEeeeeeeecC
Q 029362 161 AALINQKCHVKNKDIRKFLDGIYVSEKSTILGE 193 (194)
Q Consensus 161 AA~Ir~~~~~Kgkd~R~f~DGiyv~ek~~~~~~ 193 (194)
||+||+.|++|+||+|+|+|||||++|++..++
T Consensus 157 AA~I~~~~~~~~~d~r~f~dgiy~~~k~~~~~~ 189 (190)
T PTZ00027 157 AALIHQSTLVRNKDIRKFLDGIYVSEKGTVDKD 189 (190)
T ss_pred HHHHHHHhcccCCCccEeecCEEEEEeeeeccc
Confidence 999999999999999999999999999965443
No 4
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=100.00 E-value=1.2e-64 Score=411.55 Aligned_cols=170 Identities=38% Similarity=0.689 Sum_probs=160.7
Q ss_pred eeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEccccccCCcEEEEEeccCChhhhhHHHhHHHHHhhheee
Q 029362 7 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITG 86 (194)
Q Consensus 7 ~~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~Gt~rsli~NmI~G 86 (194)
++||.||++|+|+++++.|+|+||+|+|+++|++..+++.++ ++++.+++|+++++++|+|||+||||+|||+|
T Consensus 1 ~~pI~IP~~V~v~i~~~~i~vkGp~G~L~~~~~~~~v~i~~~------~~~i~v~~~~~~k~~~a~~gt~rsli~NmI~G 74 (170)
T TIGR03653 1 REEIEIPEGVSVTIEGNIVTVKGPKGEVTRELWYPGIEISVE------DGKVVIETDFARKKDKAMVGTYRSHIKNMIKG 74 (170)
T ss_pred CceEecCCCCEEEEeCCEEEEECCCeEEEEEEeCCcEEEEEe------CCEEEEEeCCCCHHHHHHHHHHHHHHHhheee
Confidence 469999999999999999999999999999994337888732 48899999999999999999999999999999
Q ss_pred eccceEEEEEEEEEEecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHHHHHHHHHhc
Q 029362 87 VTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQ 166 (194)
Q Consensus 87 Vt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~Vgq~AA~Ir~ 166 (194)
||+||+++|+++|+|||+||++ +|+.|.|+|+||||||+.++||+||++++++ ++|+|+|+|||+||||||+||+
T Consensus 75 Vt~Gf~~~LeivGvGy~~ra~~--~g~~L~l~n~LG~Sh~i~~~iP~gI~v~~~~---~~I~i~G~DKq~Vgq~AA~Ir~ 149 (170)
T TIGR03653 75 VTEGFEYKMKVVYSHFPMQVKV--EGNKVVIENFLGEKAPRRAKIPGGVKVKVKG---EEVIVTGIDKEDVGQTAANIEQ 149 (170)
T ss_pred cccCeEEEEEEEeccccEEEEE--cCCeEEEeeccccceeEEEECCCCeEEEecC---CEEEEEeCCHHHHHHHHHHHHH
Confidence 9999999999999999999999 7889999999999999999999999999997 5899999999999999999999
Q ss_pred ccccCCCceeeeeceEEEeee
Q 029362 167 KCHVKNKDIRKFLDGIYVSEK 187 (194)
Q Consensus 167 ~~~~Kgkd~R~f~DGiyv~ek 187 (194)
.|++|+||+|+|+|||||+||
T Consensus 150 ~~~~~~~d~r~f~dgiy~~~~ 170 (170)
T TIGR03653 150 ATRIKGRDPRVFQDGIYIVEK 170 (170)
T ss_pred hhcccCCCccEeecCEEEEeC
Confidence 999999999999999999996
No 5
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-57 Score=370.50 Aligned_cols=174 Identities=27% Similarity=0.447 Sum_probs=156.2
Q ss_pred ceecceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEccccccCCcEEEEEeccCChhhhhHHHhHHHHHh
Q 029362 2 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVG 81 (194)
Q Consensus 2 ~~~~~~~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~Gt~rsli~ 81 (194)
++++++.||.+|+||+|+++++.++|+||+|+|+++|++..|.++ .+ ++.+.+..++. ++.+|+|||+||||+
T Consensus 1 Msri~k~~i~~P~gV~V~i~~~~v~vkGpkGeL~~~~~~~~v~v~--~~----~~~~vv~~~~~-k~~~a~~Gt~rali~ 73 (178)
T COG0097 1 MSRIGKRPIVIPAGVTVSIEGQVVTVKGPKGELTREFHDNVVKVE--VE----DNILVVRPVDG-KRKRALHGTVRALIN 73 (178)
T ss_pred CCceeeccEecCCCeEEEEeccEEEEECCCcEEEEEecCcceEEE--ec----CCEEEEeeccc-chhHHHHHHHHHHHH
Confidence 367889999999999999999999999999999999999333555 42 47677777666 667799999999999
Q ss_pred hheeeeccceEEEEEEEEEEecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHHHHHH
Q 029362 82 NLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSA 161 (194)
Q Consensus 82 NmI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~Vgq~A 161 (194)
|||+|||+||+|+|+++|+|| ||++ +|+.|.+ +||||||+.++||+|++++++++ |+|+|+|+|||+|||||
T Consensus 74 Nmv~GVteGf~~kL~ivgvgy--ra~v--~g~~l~l--~LG~shp~~~~ip~gi~v~v~~~--t~I~v~GidKe~VGQ~A 145 (178)
T COG0097 74 NMVKGVTEGFEKKLEIVGVGY--RAQV--VGGNLEL--FLGYSHPVVIEIPEGITVEVPGP--TEIVVEGIDKELVGQVA 145 (178)
T ss_pred HHheecccceEEEEEEEEecc--eeEE--eccEEEE--eecccCCeEEECCCCeEEEecCC--CEEEEEcCCHHHHhHHH
Confidence 999999999999999999999 6778 5777777 99999999999999999999998 99999999999999999
Q ss_pred HHHhcccccCCCceee-eeceEEEeeeeee
Q 029362 162 ALINQKCHVKNKDIRK-FLDGIYVSEKSTI 190 (194)
Q Consensus 162 A~Ir~~~~~Kgkd~R~-f~DGiyv~ek~~~ 190 (194)
|+||++|+.+.+|.|. |+||+||.+|+-.
T Consensus 146 A~Ir~~r~pepykgKgi~ydge~I~~K~gK 175 (178)
T COG0097 146 ANIRAARKPEPYKGKGIRYDGEYIRRKEGK 175 (178)
T ss_pred HHHHhccCCCCCCCcceEEcCEEEEEeccc
Confidence 9999999987777777 8999999999843
No 6
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=100.00 E-value=2.9e-55 Score=358.96 Aligned_cols=169 Identities=26% Similarity=0.412 Sum_probs=158.9
Q ss_pred eecceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEccccccCCcEEEEEeccCChhhhhHHHhHHHHHhh
Q 029362 3 TILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGN 82 (194)
Q Consensus 3 ~~~~~~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~Gt~rsli~N 82 (194)
+++|++||.||+||+|+++++.|+|+||+|+|+++|++ ++++. .+ ++.+.+..|+++++++|+|||+||||+|
T Consensus 2 srig~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~-~v~i~--~~----~~~i~v~~~~~~k~~~a~~gt~~slI~N 74 (178)
T CHL00140 2 SRIGKLPIKIPDNVNVSIDDQIIKVKGPKGTLSRKIPD-LITIE--IQ----DNSLFVSKKDESKKARALHGLYRTLINN 74 (178)
T ss_pred CcccceeeecCCCCEEEEECCEEEEECCCEEEEEECCC-CeEEE--Ee----CCEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999 88887 42 4789999999999999999999999999
Q ss_pred heeeeccceEEEEEEEEEEecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHHHHHHH
Q 029362 83 LITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAA 162 (194)
Q Consensus 83 mI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~Vgq~AA 162 (194)
||+|||+||+++|+++|+|| ||.+ +|+.|.| +||||||+.++||+|++|++++| |+|+|+|+|||+||||||
T Consensus 75 mi~GVt~Gf~~~L~lvGvGy--r~~~--~g~~l~l--~LG~sh~i~~~IP~gv~v~~~~~--t~I~i~G~dke~Vgq~AA 146 (178)
T CHL00140 75 MVIGVSEGFEKKLELQGVGY--RAQV--QGKDLIL--NLGYSHPVKIKIPPGISVEVENN--TNITIKGIDKELVGQFAA 146 (178)
T ss_pred HHhhcccCceEEEEEEEEEE--EEEE--eCCcEEE--EecCCeeEEEECCCCeEEEeCCC--CEEEEEECCHHHHHHHHH
Confidence 99999999999999999999 8999 6888999 99999999999999999999998 999999999999999999
Q ss_pred HHhcccc---cCCCceeeeeceEEEeeee
Q 029362 163 LINQKCH---VKNKDIRKFLDGIYVSEKS 188 (194)
Q Consensus 163 ~Ir~~~~---~Kgkd~R~f~DGiyv~ek~ 188 (194)
+||++|+ |||||+| .+|.+|..|.
T Consensus 147 ~Ir~~r~pepYKGKGI~--y~~e~i~~K~ 173 (178)
T CHL00140 147 KIRSVRPPEPYKGKGIR--YKGEVIRRKA 173 (178)
T ss_pred HHhccCCCCCcCCccEe--ECCEEEEEec
Confidence 9999998 8999998 6677776664
No 7
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=100.00 E-value=3.9e-53 Score=345.60 Aligned_cols=168 Identities=28% Similarity=0.456 Sum_probs=154.9
Q ss_pred eecceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEccccccCCcEEEEEeccCChhhhhHHHhHHHHHhh
Q 029362 3 TILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGN 82 (194)
Q Consensus 3 ~~~~~~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~Gt~rsli~N 82 (194)
+++|+.||.||++|+|+++++.|+|+||+|+|+++|++ .+++.++ +|.+.++.|+++++++|+|||+||||+|
T Consensus 1 s~ig~~~I~IP~~V~v~~~~~~v~v~Gp~G~l~~~l~~-~i~i~~~------~~~i~v~~~~~~kk~~a~~gt~~s~i~N 73 (175)
T TIGR03654 1 SRIGKKPIAIPAGVEVTIDGNVVTVKGPKGELSRTLHP-GVTVKVE------DGQLTVSRPNDSKEARALHGTTRALINN 73 (175)
T ss_pred CcccccceecCCCcEEEEeCCEEEEEcCCeEEEEEcCC-CeEEEEE------CCEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999976 7888732 4889999999999999999999999999
Q ss_pred heeeeccceEEEEEEEEEEecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHHHHHHH
Q 029362 83 LITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAA 162 (194)
Q Consensus 83 mI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~Vgq~AA 162 (194)
||+|||+||+++|+++|+|| ||.+ +|+.|.| +||||||+.++||+|++++++++ |+|+|+|+|||+||||||
T Consensus 74 mi~GVt~Gf~~~L~lvGvgy--rv~~--~g~~l~l--~LG~sh~i~~~Ip~~v~v~~~~~--t~I~i~G~dke~Vgq~AA 145 (175)
T TIGR03654 74 MVIGVSEGFEKKLEIVGVGY--RAQL--QGKKLNL--SLGYSHPVEYEIPEGITVEVPKP--TEIVVKGIDKQLVGQVAA 145 (175)
T ss_pred HhheeccCcEEEEEEEEEEE--EEEE--eCCeEEE--EecCceeEEEECCCCeEEEeCCC--CEEEEEECCHHHHHHHHH
Confidence 99999999999999999999 8999 7889999 99999999999999999999998 999999999999999999
Q ss_pred HHhcccc---cCCCceeeeeceEEEeee
Q 029362 163 LINQKCH---VKNKDIRKFLDGIYVSEK 187 (194)
Q Consensus 163 ~Ir~~~~---~Kgkd~R~f~DGiyv~ek 187 (194)
+||++|+ |||||+| .+|-+|--|
T Consensus 146 ~Ir~~r~pepYKgkGi~--~~~e~I~~K 171 (175)
T TIGR03654 146 EIRAFRKPEPYKGKGIR--YAGEVVRRK 171 (175)
T ss_pred HHhccCCCCCcCCCcEe--ECCEEEEEe
Confidence 9999999 8999998 344444433
No 8
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=100.00 E-value=6.7e-53 Score=345.00 Aligned_cols=170 Identities=29% Similarity=0.459 Sum_probs=157.8
Q ss_pred ceecceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEccccccCCcEEEEEeccCChhhhhHHHhHHHHHh
Q 029362 2 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVG 81 (194)
Q Consensus 2 ~~~~~~~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~Gt~rsli~ 81 (194)
++++|+.+|.||++|+|+++++.|+|+||+|+|+++|++ .+++.++ ++.|.++.|.++++++|+|||+||||+
T Consensus 1 ms~ig~~~I~IP~~V~v~~~~~~v~vkGp~G~l~~~~~~-~v~i~~~------~~~i~v~~~~~~k~~~a~~gt~~s~I~ 73 (178)
T PRK05498 1 MSRIGKKPIAIPAGVEVTINGNVVTVKGPKGELSRTLNP-DVTVKVE------DNEITVTRPDDSKKARALHGTTRALIN 73 (178)
T ss_pred CCcccccceecCCCCEEEEECCEEEEECCCEEEEEEcCC-CeEEEEE------CCEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999999999976 7888732 478999999999999999999999999
Q ss_pred hheeeeccceEEEEEEEEEEecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHHHHHH
Q 029362 82 NLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSA 161 (194)
Q Consensus 82 NmI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~Vgq~A 161 (194)
|||+||++||+++|+++|+|| ||.+ +|+.|.| +||||||+.++||+|++|++++| |+|+|+|+|||+|||||
T Consensus 74 Nmi~GVt~Gf~~~L~lvGvgy--rv~~--~g~~l~l--~LG~sh~i~~~Ip~gv~v~~~~~--t~I~i~G~dke~Vg~~A 145 (178)
T PRK05498 74 NMVVGVTEGFEKKLEIVGVGY--RAQV--KGKKLNL--SLGYSHPVEYEIPEGITVEVPKP--TEIVVKGIDKQLVGQVA 145 (178)
T ss_pred HHhhhcCCCeEEEEEEEeEEE--EEEE--eCCeEEE--EecCCEEEEEECCCCeEEEeCCC--CEEEEEECCHHHHHHHH
Confidence 999999999999999999999 8999 7889999 99999999999999999999997 99999999999999999
Q ss_pred HHHhcccc---cCCCceeeeeceEEEeeee
Q 029362 162 ALINQKCH---VKNKDIRKFLDGIYVSEKS 188 (194)
Q Consensus 162 A~Ir~~~~---~Kgkd~R~f~DGiyv~ek~ 188 (194)
|+||++|+ |||||+| .+|.+|-.|.
T Consensus 146 A~Ir~~r~pe~YkgkGi~--~~~e~i~~K~ 173 (178)
T PRK05498 146 AEIRSYRPPEPYKGKGIR--YAGEVVRRKE 173 (178)
T ss_pred HHHhccCCCCCccCCcEe--ECCEEEEEec
Confidence 99999999 8999998 5677776664
No 9
>KOG3254 consensus Mitochondrial/chloroplast ribosomal protein L6 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.5e-44 Score=289.65 Aligned_cols=164 Identities=23% Similarity=0.313 Sum_probs=144.9
Q ss_pred cceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEccccccCCcEEEEEeccCChhhhhHHHhHHHHHhhhe
Q 029362 5 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLI 84 (194)
Q Consensus 5 ~~~~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~Gt~rsli~NmI 84 (194)
+++..|..|++-.-++++..++|+||+|+|++++|+ +++++ .+. ...+........++|++++||||+|||++||+
T Consensus 34 ~~~k~i~~~e~k~~~lege~l~vkGP~gel~l~~P~-~l~L~--~dk-k~~g~~~~~k~~etkkqr~mwgt~R~l~~N~v 109 (211)
T KOG3254|consen 34 VGKKEIIVKENKQRDLEGEQLQVKGPHGELNLRFPN-YLNLS--NDK-KKSGMDANIKKQETKKQRAMWGTFRALLANNV 109 (211)
T ss_pred ecceeEEeehhhccccccCceEeeCCcceeeccCCc-ccccc--chh-hhcceeeeecchhhHHHHHHHHHHHHHHhccc
Confidence 567788888888888899999999999999999999 77775 311 02233443345678999999999999999999
Q ss_pred eeeccceEEEEEEEEEEecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHHHHHHHHH
Q 029362 85 TGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALI 164 (194)
Q Consensus 85 ~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~Vgq~AA~I 164 (194)
.|||.||.+.|++||+|| ||++ +|+.|.+ +|||||++.+.||+++.|+++.| |.++++|+|||+|+||||.+
T Consensus 110 ~GVt~g~~k~l~lVGvGY--Ra~l--egk~l~l--klG~S~~v~l~iP~~v~Vk~p~p--tsl~~~G~dKq~V~qFAAkv 181 (211)
T KOG3254|consen 110 KGVTMGFLKILKLVGVGY--RASL--EGKFLHL--KLGYSHDVLLSIPTDVQVKNPTP--TSLVLRGIDKQKVTQFAAKV 181 (211)
T ss_pred hhhhhhhhheeeEEeeee--EEEe--cCceEEE--EeccccceeecCCCceEEecCCC--CEEEEecccHHHHHHHHHHH
Confidence 999999999999999999 8999 7999999 99999999999999999999998 99999999999999999999
Q ss_pred hcccc---cCCCceeeeeceEEEeee
Q 029362 165 NQKCH---VKNKDIRKFLDGIYVSEK 187 (194)
Q Consensus 165 r~~~~---~Kgkd~R~f~DGiyv~ek 187 (194)
|+|+| |||| |||++.+
T Consensus 182 RsfkpPEPYKGK-------GIyv~dE 200 (211)
T KOG3254|consen 182 RSFKPPEPYKGK-------GIYVDDE 200 (211)
T ss_pred hccCCCCCcCCC-------ceEeccc
Confidence 99988 9999 7777654
No 10
>KOG3255 consensus 60S ribosomal protein L9 [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.1e-29 Score=207.17 Aligned_cols=179 Identities=61% Similarity=0.977 Sum_probs=165.7
Q ss_pred CceecceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEccccccCCcEEEEEeccCChhhhhHHHhHHHHH
Q 029362 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (194)
Q Consensus 1 M~~~~~~~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~Gt~rsli 80 (194)
|+.++.++.+.||++|++++++..++|+||+|+|+++|.|.++++.+..+ +.+.+.+..|++.|+..|..-|..|++
T Consensus 1 mk~Ilsn~tv~iPe~v~it~k~~v~~v~gprgtl~~d~~hi~~~~~~~~~---~~~~ik~~~~~~~Rk~va~l~t~~s~i 77 (179)
T KOG3255|consen 1 MKTILSNQTVHIPENVDITLKGHVVIVKGPRGTLWRDFNHINVELSLLGK---KKKRLKIDKWWGTRKGVACLRTVVSHI 77 (179)
T ss_pred CceEEeceEEecCCCceEEEeeEEEEEeCCCcceeccccccchhhhhhcc---hhhhhhhhhhhccchhHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999998777764432 124688899999999999999999999
Q ss_pred hhheeeeccceEEEEEEEEEEecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHHHHH
Q 029362 81 GNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRS 160 (194)
Q Consensus 81 ~NmI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~Vgq~ 160 (194)
+||++||+.||.|++..++.|||+...+.++++..++.||||.+.+..+++++|+........+++++++|+|.+.|+|.
T Consensus 78 en~i~gvt~~~i~k~~av~a~f~in~~~~~~~~s~~i~n~l~~k~~~~~~~~~Gv~~~~~~~~~~~i~~~~~~~~~vs~~ 157 (179)
T KOG3255|consen 78 ENCIKGVTIGFIYKMRAVYAHFPINTVIQENGKSEEIRNFLGEKLVRRVEMRPGVTIVRSSKVKDEIVLEGNDLELVSQS 157 (179)
T ss_pred HHHHhcchHHHHHHhhhHHhhccccceecCCCcchhhhhhhhhhccceEecCCCeEEeeehhcchhheecccchhhhhhH
Confidence 99999999999999999999999999998888899999999999999999999999999877789999999999999999
Q ss_pred HHHHhcccccCCCceeeeeceEEEeeeeee
Q 029362 161 AALINQKCHVKNKDIRKFLDGIYVSEKSTI 190 (194)
Q Consensus 161 AA~Ir~~~~~Kgkd~R~f~DGiyv~ek~~~ 190 (194)
||. ++.|..+++ +| ||+||+++
T Consensus 158 ~a~-~~~~~~~~~-----ld--yv~~k~~~ 179 (179)
T KOG3255|consen 158 AAL-QQICTVKNK-----LD--YVSEKGTI 179 (179)
T ss_pred hHh-hccceehhh-----cc--hhhhcccC
Confidence 988 999999977 88 99999863
No 11
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=99.78 E-value=6.5e-19 Score=124.63 Aligned_cols=74 Identities=38% Similarity=0.669 Sum_probs=67.1
Q ss_pred cCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEccccccCCcEEEEEeccCChhhhh---HHHhHHHHHhhheeeec
Q 029362 12 IPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSA---AIRTALSHVGNLITGVT 88 (194)
Q Consensus 12 IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a---~~Gt~rsli~NmI~GVt 88 (194)
||+||+|+++++.++|+||+|+|+++|++ .+.+.+..+ ++.+.+..+.+++++++ +|||+|||++||++||+
T Consensus 1 IP~gV~v~~~~~~i~v~G~~g~l~~~~~~-~v~v~~~~~----~~~~~~~~~~~~~k~~~~~a~~gt~rsli~n~i~GV~ 75 (77)
T PF00347_consen 1 IPEGVKVTIKGNIITVKGPKGELSRPIPP-GVKVEIKVE----DNKITVSVLSGNKKQKAFAAMIGTYRSLINNMIKGVT 75 (77)
T ss_dssp SSTTCEEEEETTEEEEESSSSEEEEEETT-TEEEEEEEE----TTSEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCcEEEEECCCEeEEEECCC-CeeEEEEcC----CCceEEEECcccHhHhhhHHhhccccccccCceeEEC
Confidence 79999999999999999999999999999 688775442 47788888888999999 99999999999999999
Q ss_pred cc
Q 029362 89 KG 90 (194)
Q Consensus 89 ~G 90 (194)
+|
T Consensus 76 ~G 77 (77)
T PF00347_consen 76 EG 77 (77)
T ss_dssp TE
T ss_pred CC
Confidence 87
No 12
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=98.10 E-value=1.4e-06 Score=61.17 Aligned_cols=68 Identities=25% Similarity=0.235 Sum_probs=52.7
Q ss_pred EEecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeC--CCCCcEEEEEeCcHhHHHHHHHHHhcccccCCCcee
Q 029362 100 AHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRS--DKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIR 176 (194)
Q Consensus 100 vGypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~--~~~k~~i~l~G~Dkq~Vgq~AA~Ir~~~~~Kgkd~R 176 (194)
.|| ++.+ +++.+.+ .|++|...+++|+++.+++. +...+...+++.|++.. +||.++.+|..-...++
T Consensus 3 ~gV--~v~~--~~~~i~v---~G~~g~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~~--~~a~~gt~rsli~n~i~ 72 (77)
T PF00347_consen 3 EGV--KVTI--KGNIITV---KGPKGELSRPIPPGVKVEIKVEDNKITVSVLSGNKKQKA--FAAMIGTYRSLINNMIK 72 (77)
T ss_dssp TTC--EEEE--ETTEEEE---ESSSSEEEEEETTTEEEEEEEETTSEEEEEEEESHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred CcE--EEEE--eCcEEEE---ECCCEeEEEECCCCeeEEEEcCCCceEEEECcccHhHhh--hHHhhccccccccCcee
Confidence 356 7888 5655555 99999999999999999965 43336778899999999 99999999984333333
No 13
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=60.68 E-value=25 Score=25.04 Aligned_cols=27 Identities=19% Similarity=0.422 Sum_probs=21.6
Q ss_pred CCCcEEEEeCcEEEEEcCC--------cEEEEEec
Q 029362 13 PDGVKVKINAKVIEVEGPR--------GKLSRDFK 39 (194)
Q Consensus 13 P~~V~v~i~~~~i~vkGp~--------G~l~~~~~ 39 (194)
|+.++|++.++.++|+|-+ |+.++.|.
T Consensus 21 pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~ 55 (81)
T cd06479 21 PEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQ 55 (81)
T ss_pred HHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEE
Confidence 5789999999999999854 66666555
No 14
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=59.48 E-value=10 Score=30.92 Aligned_cols=21 Identities=43% Similarity=0.716 Sum_probs=11.9
Q ss_pred eEEcCCCcEEEEeCcEEEEEc
Q 029362 9 TMDIPDGVKVKINAKVIEVEG 29 (194)
Q Consensus 9 ~I~IP~~V~v~i~~~~i~vkG 29 (194)
.++||+||+++..++.|+++|
T Consensus 114 ~~~iP~gI~v~~~~~~I~i~G 134 (170)
T TIGR03653 114 RAKIPGGVKVKVKGEEVIVTG 134 (170)
T ss_pred EEECCCCeEEEecCCEEEEEe
Confidence 455667777655444455544
No 15
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=57.84 E-value=12 Score=30.97 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=23.9
Q ss_pred eeEEcCCCcEEEEeC-cEEEEEcCCcEEEEEec
Q 029362 8 ETMDIPDGVKVKINA-KVIEVEGPRGKLSRDFK 39 (194)
Q Consensus 8 ~~I~IP~~V~v~i~~-~~i~vkGp~G~l~~~~~ 39 (194)
..++||+|+++++.+ ..|+|+|+.=++.=.+.
T Consensus 113 ~~~~ip~gi~v~v~~~t~I~v~GidKe~VGQ~A 145 (178)
T COG0097 113 VVIEIPEGITVEVPGPTEIVVEGIDKELVGQVA 145 (178)
T ss_pred eEEECCCCeEEEecCCCEEEEEcCCHHHHhHHH
Confidence 457889999999988 67999998755443333
No 16
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=54.74 E-value=32 Score=22.85 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=23.4
Q ss_pred CCeEEEeCCCCCcEEEEEeCcHhHHHHHHHHH
Q 029362 133 DGVTVIRSDKVKDELVLDGNDIELVSRSAALI 164 (194)
Q Consensus 133 ~gv~v~~~~~~k~~i~l~G~Dkq~Vgq~AA~I 164 (194)
.|+++.+++. ..+.++|.|++.|....+.|
T Consensus 31 tg~~I~i~~~--g~v~I~G~~~~~v~~A~~~I 60 (61)
T cd02393 31 TGVKIDIEDD--GTVYIAASDKEAAEKAKKMI 60 (61)
T ss_pred HCCEEEeCCC--CEEEEEeCCHHHHHHHHHHh
Confidence 3667777765 78999999999888776655
No 17
>PF12970 DUF3858: Domain of Unknown Function with PDB structure (DUF3858); InterPro: IPR024544 This domain of unknown function is structurally similar to part of neuropilin-2. The proteins it occurs in have not yet been functionally characterised.; PDB: 3KD4_A.
Probab=52.14 E-value=56 Score=25.21 Aligned_cols=34 Identities=26% Similarity=0.507 Sum_probs=23.8
Q ss_pred eeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecC
Q 029362 7 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKH 40 (194)
Q Consensus 7 ~~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~ 40 (194)
...|.+|+|-++......-.++.|-|++++.+..
T Consensus 40 tyti~~pegm~l~t~~~~K~I~N~~Gk~~isv~~ 73 (116)
T PF12970_consen 40 TYTIELPEGMKLVTPPMEKKIDNPVGKVSISVKP 73 (116)
T ss_dssp EEEEEE-TT-EE-S--S-EEEEETTEEEEEEEEE
T ss_pred EEEEEcCCCCeeecCccceeccCCcceEEEEEEe
Confidence 3578999999988877788999999999988775
No 18
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=52.07 E-value=17 Score=30.00 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=15.2
Q ss_pred eEEcCCCcEEEEeCcEEEEEcCCcE
Q 029362 9 TMDIPDGVKVKINAKVIEVEGPRGK 33 (194)
Q Consensus 9 ~I~IP~~V~v~i~~~~i~vkGp~G~ 33 (194)
.++||+||+++..+..|+++|..=+
T Consensus 120 ~~~iP~gV~v~~~~t~I~i~GiDKq 144 (180)
T PRK05518 120 RAKILGGVKVKVKGEDVIVEGIDKE 144 (180)
T ss_pred EEeCCCCeEEEecCCEEEEEeCCHH
Confidence 4566777777665545666665433
No 19
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=44.65 E-value=24 Score=29.25 Aligned_cols=14 Identities=0% Similarity=0.071 Sum_probs=8.9
Q ss_pred HHHHHHHHHhcccc
Q 029362 156 LVSRSAALINQKCH 169 (194)
Q Consensus 156 ~Vgq~AA~Ir~~~~ 169 (194)
..|-++|.|+..-.
T Consensus 67 l~Gt~rslI~NMI~ 80 (189)
T PTZ00179 67 TINTALSHVRNMIT 80 (189)
T ss_pred HHHHHHHHHHHHhh
Confidence 56777777766533
No 20
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=42.88 E-value=1.8e+02 Score=23.63 Aligned_cols=57 Identities=25% Similarity=0.307 Sum_probs=41.2
Q ss_pred eeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCc--Hh---HHHHHHHHHhcccc
Q 029362 105 NASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGND--IE---LVSRSAALINQKCH 169 (194)
Q Consensus 105 ra~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~D--kq---~Vgq~AA~Ir~~~~ 169 (194)
.+++ +++.|.++.-+| .....+|..+.+...+ +.|.++-.+ ++ ..|.++|.|++...
T Consensus 16 ~v~i--~~~~v~vkGp~G---~l~~~~~~~v~i~~~~---~~i~v~~~~~~k~~~a~~gt~~slI~Nmi~ 77 (178)
T CHL00140 16 NVSI--DDQIIKVKGPKG---TLSRKIPDLITIEIQD---NSLFVSKKDESKKARALHGLYRTLINNMVI 77 (178)
T ss_pred EEEE--ECCEEEEECCCE---EEEEECCCCeEEEEeC---CEEEEEcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 3455 678899976666 5567888899988865 678887443 32 48999999998644
No 21
>PF00338 Ribosomal_S10: Ribosomal protein S10p/S20e; InterPro: IPR001848 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Evidence suggests that, in prokaryotes, the peptidyl transferase reaction is performed by the large subunit 23S rRNA, whereas proteins probably have a greater role in eukaryotic ribosomes. Most of the proteins lie close to, or on the surface of, the 30S subunit, arranged peripherally around the rRNA []. The small subunit ribosomal proteins can be categorised as primary binding proteins, which bind directly and independently to 16S rRNA; secondary binding proteins, which display no specific affinity for 16S rRNA, but its assembly is contingent upon the presence of one or more primary binding proteins; and tertiary binding proteins, which require the presence of one or more secondary binding proteins and sometimes other tertiary binding proteins. The small ribosomal subunit protein S10 consists of about 100 amino acid residues. In Escherichia coli, S10 is involved in binding tRNA to the ribosome, and also operates as a transcriptional elongation factor []. Experimental evidence [] has revealed that S10 has virtually no groups exposed on the ribosomal surface, and is one of the "split proteins": these are a discrete group that are selectively removed from 30S subunits under low salt conditions and are required for the formation of activated 30S reconstitution intermediate (RI*) particles. S10 belongs to a family of proteins [] that includes: bacteria S10; algal chloroplast S10; cyanelle S10; archaebacterial S10; Marchantia polymorpha and Prototheca wickerhamii mitochondrial S10; Arabidopsis thaliana mitochondrial S10 (nuclear encoded); vertebrate S20; plant S20; and yeast URP2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1S1H_J 3U5G_U 3O30_N 3O2Z_N 3IZB_J 3U5C_U 3R2C_J 3R2D_J 2ZKQ_j 2XQD_J ....
Probab=38.58 E-value=68 Score=22.98 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=26.9
Q ss_pred EEEEEeCcHhHHHHHHHHHhcccccCCCcee
Q 029362 146 ELVLDGNDIELVSRSAALINQKCHVKNKDIR 176 (194)
Q Consensus 146 ~i~l~G~Dkq~Vgq~AA~Ir~~~~~Kgkd~R 176 (194)
+|.|+|-|...|-.+|..|.++.+..|-++.
T Consensus 2 ~I~l~s~d~~~l~~~~~~i~~~~~~~~~~~~ 32 (97)
T PF00338_consen 2 RIKLKSYDKKLLESYVKFIHKLAKNLGIKVS 32 (97)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHCTSSCEE
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHHhCCccc
Confidence 5889999999999999999999887666654
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=37.49 E-value=29 Score=22.27 Aligned_cols=20 Identities=25% Similarity=0.616 Sum_probs=16.7
Q ss_pred CCCcEEEEeCcEEEEEcCCc
Q 029362 13 PDGVKVKINAKVIEVEGPRG 32 (194)
Q Consensus 13 P~~V~v~i~~~~i~vkGp~G 32 (194)
|+.+.|.++++.+.|+|...
T Consensus 19 ~~~i~v~~~~~~l~v~~~~~ 38 (80)
T cd00298 19 KEDIKVEVEDNVLTISGKRE 38 (80)
T ss_pred HHHeEEEEECCEEEEEEEEc
Confidence 46799999999999998654
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=37.16 E-value=63 Score=21.69 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=23.0
Q ss_pred CCCcEEEEeCcEEEEEcCCcEEEEEecC
Q 029362 13 PDGVKVKINAKVIEVEGPRGKLSRDFKH 40 (194)
Q Consensus 13 P~~V~v~i~~~~i~vkGp~G~l~~~~~~ 40 (194)
|++++++++++.+++.|+.=.++.+|++
T Consensus 19 ~~~v~v~~~~~~l~i~~~~~~~~~~l~~ 46 (78)
T cd06469 19 TSKVDIFCSDLYLKVNFPPYLFELDLAA 46 (78)
T ss_pred cccceEEEecCEEEEcCCCEEEEEeCcc
Confidence 5788999999999999966667777776
No 24
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=36.60 E-value=23 Score=25.39 Aligned_cols=19 Identities=11% Similarity=0.415 Sum_probs=15.1
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 029362 13 PDGVKVKINAKVIEVEGPR 31 (194)
Q Consensus 13 P~~V~v~i~~~~i~vkGp~ 31 (194)
|+.++|++.++.++|+|-+
T Consensus 20 ~edI~V~v~~~~L~I~ge~ 38 (83)
T cd06477 20 PEDIIIQVFEGWLLIKGQH 38 (83)
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 5688888888888888853
No 25
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=36.04 E-value=23 Score=25.89 Aligned_cols=19 Identities=32% Similarity=0.594 Sum_probs=16.3
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 029362 13 PDGVKVKINAKVIEVEGPR 31 (194)
Q Consensus 13 P~~V~v~i~~~~i~vkGp~ 31 (194)
|+.++|++.++.|+|+|-.
T Consensus 28 pEDL~Vkv~~~~L~V~Gkh 46 (91)
T cd06480 28 PEELTVKTKDGFVEVSGKH 46 (91)
T ss_pred HHHcEEEEECCEEEEEEEE
Confidence 7889999999999998854
No 26
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=34.94 E-value=25 Score=25.03 Aligned_cols=18 Identities=39% Similarity=0.730 Sum_probs=15.7
Q ss_pred CCCcEEEEeCcEEEEEcC
Q 029362 13 PDGVKVKINAKVIEVEGP 30 (194)
Q Consensus 13 P~~V~v~i~~~~i~vkGp 30 (194)
|+.++|++.++.++|+|-
T Consensus 20 ~edi~V~v~~~~L~I~g~ 37 (84)
T cd06498 20 PEELKVKVLGDFIEIHGK 37 (84)
T ss_pred HHHeEEEEECCEEEEEEE
Confidence 678899999999999983
No 27
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=34.91 E-value=29 Score=24.46 Aligned_cols=18 Identities=28% Similarity=0.656 Sum_probs=14.8
Q ss_pred CCCcEEEEeCcEEEEEcC
Q 029362 13 PDGVKVKINAKVIEVEGP 30 (194)
Q Consensus 13 P~~V~v~i~~~~i~vkGp 30 (194)
|++++|++.++.++|+|-
T Consensus 20 ~edI~V~v~~~~L~I~g~ 37 (83)
T cd06478 20 PEELSVKVLGDFVEIHGK 37 (83)
T ss_pred HHHeEEEEECCEEEEEEE
Confidence 578888888888888884
No 28
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=34.08 E-value=26 Score=24.91 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=15.4
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 029362 13 PDGVKVKINAKVIEVEGPR 31 (194)
Q Consensus 13 P~~V~v~i~~~~i~vkGp~ 31 (194)
|+.++|++.++.++|+|-.
T Consensus 20 ~edi~V~v~~~~L~I~g~~ 38 (83)
T cd06476 20 PDEITVRTVDNLLEVSARH 38 (83)
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 5788889888899988853
No 29
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=31.80 E-value=24 Score=26.91 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=12.0
Q ss_pred eeeeceEEEeeeee
Q 029362 176 RKFLDGIYVSEKST 189 (194)
Q Consensus 176 R~f~DGiyv~ek~~ 189 (194)
-+|.||.|++|.+-
T Consensus 52 l~F~dG~W~~e~~~ 65 (108)
T cd07429 52 LVFEDGRWISESGG 65 (108)
T ss_pred EEeeCCEEecCCCC
Confidence 46999999999874
No 30
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=31.62 E-value=35 Score=30.21 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=28.7
Q ss_pred cCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHHHH
Q 029362 121 LGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSR 159 (194)
Q Consensus 121 LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~Vgq 159 (194)
=.|||.++-.+|....+ ++.| ..++++|++.=+-++
T Consensus 167 Pvysh~~yD~vpd~~~v-~~~p--dIlI~EG~nvLq~~~ 202 (283)
T COG1072 167 PVYSHLIYDPVPDAFQV-VPQP--DILIVEGNNVLQDGE 202 (283)
T ss_pred ccccccccccCCCceee-cCCC--CEEEEechhhhcCCC
Confidence 68999999999988877 5555 899999998544433
No 31
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=31.04 E-value=31 Score=24.57 Aligned_cols=19 Identities=26% Similarity=0.613 Sum_probs=15.5
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 029362 13 PDGVKVKINAKVIEVEGPR 31 (194)
Q Consensus 13 P~~V~v~i~~~~i~vkGp~ 31 (194)
|+.++|++.++.++|+|-+
T Consensus 23 ~edi~V~v~~~~L~I~g~~ 41 (86)
T cd06497 23 PEDLTVKVLDDYVEIHGKH 41 (86)
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 5788889988999998853
No 32
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=30.87 E-value=35 Score=24.39 Aligned_cols=19 Identities=26% Similarity=0.704 Sum_probs=15.9
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 029362 13 PDGVKVKINAKVIEVEGPR 31 (194)
Q Consensus 13 P~~V~v~i~~~~i~vkGp~ 31 (194)
|+.++|++.++.++|+|-.
T Consensus 20 ~edI~V~v~~~~L~I~g~~ 38 (87)
T cd06481 20 PEDLSVRVDGRKLVVTGKR 38 (87)
T ss_pred hHHeEEEEECCEEEEEEEE
Confidence 6788999999999998853
No 33
>PRK14434 acylphosphatase; Provisional
Probab=30.35 E-value=22 Score=25.91 Aligned_cols=55 Identities=20% Similarity=0.161 Sum_probs=33.3
Q ss_pred EEEEEEecceeEecCCCCeEE-EecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHHHHHHHHHhccc
Q 029362 96 RFVYAHFPINASIGNNNKAIE-IRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKC 168 (194)
Q Consensus 96 ~lvGvGypira~~~~~g~~l~-l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~Vgq~AA~Ir~~~ 168 (194)
+.-|||| |..+....+.+. | -||- -..++| .=+|.++|.+.+.|-+|.+.|++-.
T Consensus 11 ~VQGVGF--R~fv~~~A~~lg~l---~G~V----~N~~dG---------sVei~~qG~~~~~l~~f~~~l~~g~ 66 (92)
T PRK14434 11 RVQGVGF--RYSVYSLALEIGDI---YGRV----WNNDDG---------TVEILAQSDDSAKLAKFIQEIRKGP 66 (92)
T ss_pred eecceeE--hHHHHHHHHHcCCc---EEEE----EECCCC---------CEEEEEEcCCHHHHHHHHHHHhcCC
Confidence 5678999 677743334444 4 2221 222333 0267788877778999999888743
No 34
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=30.10 E-value=2.2e+02 Score=22.30 Aligned_cols=75 Identities=15% Similarity=0.011 Sum_probs=38.1
Q ss_pred EecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCC-cEEEEEeCcHhHHHHHHHHHhcccc-cCCCceeee
Q 029362 101 HFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCH-VKNKDIRKF 178 (194)
Q Consensus 101 Gypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k-~~i~l~G~Dkq~Vgq~AA~Ir~~~~-~Kgkd~R~f 178 (194)
|| ++..| ++-.+.|...-|-.+-+.-+=|.--+=.+.++.| ++|+|.-.|.+.+-+..|+..++-+ |||++=.-|
T Consensus 23 Gf--kll~E-Ena~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~EIe~LLar~~~~~~l~kg~~gyAf 99 (125)
T PF14506_consen 23 GF--KLLSE-ENALAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPKEIEALLARGAQYDRLYKGKNGYAF 99 (125)
T ss_dssp ----EEEEE-ETTEEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHHHHHHHHHC-S--SEEEE-SSSEEE
T ss_pred Cc--EEeec-cccEEEecCCCCceEEEEecCCccccccccCcceeeEEEEEcCCHHHHHHHHhcccccceeEEcCCceEE
Confidence 56 55554 3444444322222333333444333335566534 6899999999999999999988766 788865544
No 35
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=28.85 E-value=37 Score=23.66 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=16.4
Q ss_pred CCCcEEEEeCcEEEEEcCCc
Q 029362 13 PDGVKVKINAKVIEVEGPRG 32 (194)
Q Consensus 13 P~~V~v~i~~~~i~vkGp~G 32 (194)
|+.++|+++++.++|+|-..
T Consensus 20 ~edI~v~v~~~~L~I~g~~~ 39 (83)
T cd06526 20 PEELKVKVSDNKLVVEGKHE 39 (83)
T ss_pred HHHcEEEEECCEEEEEEEEe
Confidence 56889999999999998643
No 36
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=28.38 E-value=37 Score=24.50 Aligned_cols=18 Identities=39% Similarity=0.625 Sum_probs=13.6
Q ss_pred CCCcEEEEeCcEEEEEcC
Q 029362 13 PDGVKVKINAKVIEVEGP 30 (194)
Q Consensus 13 P~~V~v~i~~~~i~vkGp 30 (194)
|+.++|++.++.++|+|-
T Consensus 21 kedI~V~v~~~~L~I~ge 38 (87)
T cd06482 21 PDQVKVKVKDGKVQVSAE 38 (87)
T ss_pred HHHeEEEEECCEEEEEEE
Confidence 357788888888888874
No 37
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=27.98 E-value=3.3e+02 Score=22.05 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=40.6
Q ss_pred eeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCc--H---hHHHHHHHHHhcccc
Q 029362 105 NASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGND--I---ELVSRSAALINQKCH 169 (194)
Q Consensus 105 ra~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~D--k---q~Vgq~AA~Ir~~~~ 169 (194)
.+++ +++.|.++.-+| .....+|.++.+...+ +.+.++-.+ + ..+|-++|.|++.-.
T Consensus 15 ~v~~--~~~~v~v~Gp~G---~l~~~l~~~i~i~~~~---~~i~v~~~~~~kk~~a~~gt~~s~i~Nmi~ 76 (175)
T TIGR03654 15 EVTI--DGNVVTVKGPKG---ELSRTLHPGVTVKVED---GQLTVSRPNDSKEARALHGTTRALINNMVI 76 (175)
T ss_pred EEEE--eCCEEEEEcCCe---EEEEEcCCCeEEEEEC---CEEEEEecCCCHHHHHHHHHHHHHHHHHhh
Confidence 3455 678899987888 4456668999998866 678887444 2 367888888887544
No 38
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=27.49 E-value=66 Score=22.82 Aligned_cols=19 Identities=16% Similarity=0.515 Sum_probs=16.2
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 029362 13 PDGVKVKINAKVIEVEGPR 31 (194)
Q Consensus 13 P~~V~v~i~~~~i~vkGp~ 31 (194)
|++++|+++++.++|+|..
T Consensus 24 kedi~v~~~~~~L~I~g~~ 42 (90)
T cd06470 24 EDDLEIEVENNQLTVTGKK 42 (90)
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 4689999999999999853
No 39
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=26.42 E-value=45 Score=23.73 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=14.0
Q ss_pred CCCcEEEEeCcEEEEEcC
Q 029362 13 PDGVKVKINAKVIEVEGP 30 (194)
Q Consensus 13 P~~V~v~i~~~~i~vkGp 30 (194)
|++++|++.++.++|+|-
T Consensus 23 ~edi~V~v~~~~L~I~g~ 40 (86)
T cd06475 23 PEELVVKTKDGVVEITGK 40 (86)
T ss_pred HHHEEEEEECCEEEEEEE
Confidence 467788888888888874
No 40
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=26.35 E-value=1.8e+02 Score=21.97 Aligned_cols=36 Identities=19% Similarity=0.382 Sum_probs=26.3
Q ss_pred eeeEEcCCCcEEEEeCc-----EEEEEcCCcEEEEEecCCcEEEE
Q 029362 7 SETMDIPDGVKVKINAK-----VIEVEGPRGKLSRDFKHLNLDFH 46 (194)
Q Consensus 7 ~~~I~IP~~V~v~i~~~-----~i~vkGp~G~l~~~~~~~~i~i~ 46 (194)
...+.||+|.+|.++.. .+.| .|+|.++-.. ++++.
T Consensus 12 g~~V~I~~g~~v~lD~~~~~l~~l~I---~G~L~f~~~~-~~~L~ 52 (125)
T PF10162_consen 12 GDNVVIPAGQTVLLDVSTPKLGSLII---GGTLIFDDDR-DITLR 52 (125)
T ss_pred CCEEEECCCCEEEEcCCChheeEEEE---EEEEEEccCC-CCEEE
Confidence 45688999999999875 5667 7888888643 44443
No 41
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=25.67 E-value=1.4e+02 Score=19.11 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=14.1
Q ss_pred cEEEEEeCcHhHHHHHHHHH
Q 029362 145 DELVLDGNDIELVSRSAALI 164 (194)
Q Consensus 145 ~~i~l~G~Dkq~Vgq~AA~I 164 (194)
+.++|+|. .+.|-...+.|
T Consensus 43 ~~v~I~G~-~~~v~~A~~~i 61 (62)
T cd02394 43 DTITITGP-KENVEKAKEEI 61 (62)
T ss_pred CEEEEEcC-HHHHHHHHHHh
Confidence 78999999 56676665554
No 42
>PF05137 PilN: Fimbrial assembly protein (PilN); InterPro: IPR007813 PilN is a plasmid-encoded, lipoprotein which locates to the outer membrane of bacteria and are part of a thin pilus required only for liquid mating [].
Probab=25.49 E-value=1.2e+02 Score=20.13 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=28.9
Q ss_pred eCCCCeEEEeCCCCCcEEEEEeC--cHhHHHHHHHHHhccccc
Q 029362 130 DMLDGVTVIRSDKVKDELVLDGN--DIELVSRSAALINQKCHV 170 (194)
Q Consensus 130 ~iP~gv~v~~~~~~k~~i~l~G~--Dkq~Vgq~AA~Ir~~~~~ 170 (194)
.+|+|+.++--....+.+.|+|. |.+.|.+|..++++..-+
T Consensus 9 ~~P~~v~l~~l~~~~~~l~i~G~a~~~~~v~~f~~~L~~~~~f 51 (78)
T PF05137_consen 9 ALPEGVWLTSLSINGNTLSISGYADSYQSVAAFLRNLEQSPFF 51 (78)
T ss_pred hCCCCEEEEEEEEeCCEEEEEEEECCHHHHHHHHHHHhhCCCc
Confidence 57999988875433478888885 577777777777764333
No 43
>COG0051 RpsJ Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]
Probab=25.47 E-value=78 Score=23.94 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=28.0
Q ss_pred CcEEEEEeCcHhHHHHHHHHHhcccccCCCcee
Q 029362 144 KDELVLDGNDIELVSRSAALINQKCHVKNKDIR 176 (194)
Q Consensus 144 k~~i~l~G~Dkq~Vgq~AA~Ir~~~~~Kgkd~R 176 (194)
+.+|-|+|-|-..+-++|..|....+..|-+++
T Consensus 5 kirI~L~s~d~~~LD~~~~~Ive~akrtg~~v~ 37 (104)
T COG0051 5 KIRIRLKSFDHRLLDQVCREIVETAKRTGADVK 37 (104)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHHhCCeee
Confidence 478999999999999999999998876665543
No 44
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=25.35 E-value=3.9e+02 Score=22.07 Aligned_cols=57 Identities=5% Similarity=0.116 Sum_probs=38.1
Q ss_pred eeEecCCCCeEEEecccCceeeEEEeCC---CCeEEEeCCCCCcEEEEEeCc-----HhHHHHHHHHHhcccc
Q 029362 105 NASIGNNNKAIEIRNFLGEKKVRKVDML---DGVTVIRSDKVKDELVLDGND-----IELVSRSAALINQKCH 169 (194)
Q Consensus 105 ra~~~~~g~~l~l~n~LG~sh~i~~~iP---~gv~v~~~~~~k~~i~l~G~D-----kq~Vgq~AA~Ir~~~~ 169 (194)
.+++ +++.+.++.-+|.-. .++| .++.+...+ +.|.++-.+ +...|-++|.|+..-.
T Consensus 17 ~V~i--~~~~v~VkGp~G~L~---~~~~~~~~~i~i~~~~---~~i~v~~~~~~~k~~a~~Gt~rslI~NmI~ 81 (190)
T PTZ00027 17 TVTV--KSRKVTVTGKYGELT---RSFRHLPVDIKLSKDG---KYIKVEMWFGTPSHLACIRTVCSHIKNMMT 81 (190)
T ss_pred EEEE--ECCEEEEECCCceEE---EEecCCCceEEEEeCC---CEEEEEeCCCCHHHHHHHHHHHHHHHHHhh
Confidence 3455 678888887788443 4444 377776565 678887444 2367888999988655
No 45
>PF14287 DUF4368: Domain of unknown function (DUF4368)
Probab=24.40 E-value=42 Score=23.36 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=29.0
Q ss_pred cHhHHHHHHHHHhcccccCCCce---eeeeceEEEeeeee
Q 029362 153 DIELVSRSAALINQKCHVKNKDI---RKFLDGIYVSEKST 189 (194)
Q Consensus 153 Dkq~Vgq~AA~Ir~~~~~Kgkd~---R~f~DGiyv~ek~~ 189 (194)
+.+.+.+|.+.||+++-+..-++ +.|.|=|+|.|...
T Consensus 9 ~~~d~~~Fi~~i~kYt~i~ELt~~il~elIdkI~V~e~~~ 48 (71)
T PF14287_consen 9 KSEDVDKFIELIRKYTDITELTPEILNELIDKIVVHEPEK 48 (71)
T ss_pred HHhhHHHHHHHHHHhCChhhCCHHHHHHHHHeEEEecccc
Confidence 34667889999999888766665 78999999988653
No 46
>PRK14440 acylphosphatase; Provisional
Probab=24.09 E-value=23 Score=25.72 Aligned_cols=52 Identities=23% Similarity=0.251 Sum_probs=31.5
Q ss_pred EEEEEEecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHHHHHHHHHhc
Q 029362 96 RFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQ 166 (194)
Q Consensus 96 ~lvGvGypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~Vgq~AA~Ir~ 166 (194)
+.-|||| |..+......+-| -|| ....++| . =+|.++|.+ +.|-+|.+.|++
T Consensus 12 ~VQGVGF--R~~v~~~A~~~gl---~G~----V~N~~dG-------~--Vei~~~G~~-~~v~~f~~~l~~ 63 (90)
T PRK14440 12 LVQGVGF--RKFVQIHAIRLGI---KGY----AKNLPDG-------S--VEVVAEGYE-EALSKLLERIKQ 63 (90)
T ss_pred eEeccCc--hHHHHHHHHHcCC---EEE----EEECCCC-------C--EEEEEEcCH-HHHHHHHHHHhh
Confidence 5678999 5666433344444 222 1223333 0 368888866 779999998885
No 47
>PRK14446 acylphosphatase; Provisional
Probab=22.24 E-value=55 Score=23.68 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=15.5
Q ss_pred EEEEEeCcHhHHHHHHHHHhc
Q 029362 146 ELVLDGNDIELVSRSAALINQ 166 (194)
Q Consensus 146 ~i~l~G~Dkq~Vgq~AA~Ir~ 166 (194)
+|.++| |.+.+.+|.+.+++
T Consensus 43 ei~~qG-~~~~l~~f~~~l~~ 62 (88)
T PRK14446 43 EVVAAG-SAAALEALEAWLWQ 62 (88)
T ss_pred EEEEEe-CHHHHHHHHHHHhh
Confidence 677788 45689999888874
No 48
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=21.64 E-value=32 Score=23.20 Aligned_cols=8 Identities=63% Similarity=1.194 Sum_probs=4.3
Q ss_pred eeeeceEE
Q 029362 176 RKFLDGIY 183 (194)
Q Consensus 176 R~f~DGiy 183 (194)
|+|+||+-
T Consensus 24 r~flDg~~ 31 (56)
T PF04863_consen 24 RAFLDGLI 31 (56)
T ss_dssp E--TTS-E
T ss_pred eeeecccc
Confidence 78999976
No 49
>PRK14424 acylphosphatase; Provisional
Probab=21.44 E-value=33 Score=25.20 Aligned_cols=55 Identities=16% Similarity=0.182 Sum_probs=32.7
Q ss_pred EEEEEEEEecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHHHHHHHHHhcc
Q 029362 94 KMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQK 167 (194)
Q Consensus 94 ~L~lvGvGypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~Vgq~AA~Ir~~ 167 (194)
.=++-|||| |..+...-. .+|-+--+. .+|+|- =+|.++|.+. .|-+|.+.|++.
T Consensus 14 ~G~VQGVGF--R~~v~~~A~------~~gl~G~V~-N~~dG~---------Vei~~qG~~~-~v~~f~~~l~~g 68 (94)
T PRK14424 14 RGVVQGVGF--RHATVREAH------ALGLRGWVA-NLEDGT---------VEAMIQGPAA-QIDRMLAWLRHG 68 (94)
T ss_pred EEeecCCch--HHHHHHHHH------HcCCeEEEE-ECCCCC---------EEEEEEECHH-HHHHHHHHHHhC
Confidence 335668999 566632223 344343333 555551 2677888664 499999998753
No 50
>PRK14450 acylphosphatase; Provisional
Probab=20.61 E-value=30 Score=25.01 Aligned_cols=53 Identities=15% Similarity=0.215 Sum_probs=30.1
Q ss_pred EEEEEEecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHHHHHHHHHhc
Q 029362 96 RFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQ 166 (194)
Q Consensus 96 ~lvGvGypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~Vgq~AA~Ir~ 166 (194)
+.-|||| |..+...-..+.| -||- -.+++|-. =+|.++| |.+.|.+|.+.+++
T Consensus 11 ~VQGVGF--R~~v~~~A~~~~l---~G~V----~N~~dG~~--------Vei~~~G-~~~~v~~f~~~l~~ 63 (91)
T PRK14450 11 KVQGVYF--RDFTRTQATRLGL---CGYA----KNLANGNE--------VEVVAEG-DKDSLLEFLDLLRS 63 (91)
T ss_pred EecCcCc--HHHHHHHHHHcCC---EEEE----EECCCCCE--------EEEEEEe-CHHHHHHHHHHHhh
Confidence 5668999 6666333334444 2221 23344411 1466777 45778999888874
No 51
>PRK14940 DNA polymerase III subunit beta; Provisional
Probab=20.50 E-value=6.1e+02 Score=22.57 Aligned_cols=47 Identities=9% Similarity=0.123 Sum_probs=35.6
Q ss_pred eeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEccccccCCcEEEEE
Q 029362 7 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKID 61 (194)
Q Consensus 7 ~~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~ 61 (194)
+..++|=+||-++.+++.++++|-.++++....- ...+. . .+.+.|.
T Consensus 24 k~~~piL~~ill~a~~~~l~l~atD~e~~i~~~i-~~~i~--e-----~G~v~v~ 70 (367)
T PRK14940 24 KKALSILSNVLLAAQDGSLTIKATDTKVSFETSI-PVNIL--A-----EGSTTVF 70 (367)
T ss_pred CCchHHhcCEEEEEECCEEEEEEECCceEEEEEE-Eeeec--c-----CeEEEEE
Confidence 4557788999999999999999999998887554 33333 3 5778775
No 52
>PRK13036 superantigen-like protein; Reviewed
Probab=20.39 E-value=1.5e+02 Score=25.48 Aligned_cols=40 Identities=25% Similarity=0.363 Sum_probs=28.8
Q ss_pred CCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHH
Q 029362 111 NNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELV 157 (194)
Q Consensus 111 ~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~V 157 (194)
.|..++++|--||++...+.+.++-. ...|.|.|.|+++.
T Consensus 48 s~~s~e~kNv~g~~~~~~~~~~~~~~-------~~~v~L~G~dk~k~ 87 (227)
T PRK13036 48 KGRGFELTNVSGYKEGNKVTFIDNSQ-------LIDVTLTGNEKLTF 87 (227)
T ss_pred cCCcceeeeeeeEEEeeeEEEccCCE-------EEEEEEEcCcHHhc
Confidence 46788999999999987643333322 27899999999853
Done!