Query 029362
Match_columns 194
No_of_seqs 150 out of 1052
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 19:10:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029362.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029362hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_H L8, RP24, YL11, 60S rib 100.0 8.1E-73 2.8E-77 465.6 21.3 188 1-193 1-190 (191)
2 3iz5_F 60S ribosomal protein L 100.0 8.7E-73 3E-77 465.0 20.8 189 1-193 1-189 (190)
3 4a17_E RPL9, 60S ribosomal pro 100.0 9.3E-73 3.2E-77 464.2 17.9 188 1-193 1-188 (188)
4 2zkr_e 60S ribosomal protein L 100.0 1.2E-71 4.1E-76 459.1 18.4 188 1-194 1-191 (192)
5 3j21_F 50S ribosomal protein L 100.0 8.3E-70 2.8E-74 445.4 18.8 178 3-191 4-181 (184)
6 1vq8_E 50S ribosomal protein L 100.0 3.7E-69 1.3E-73 439.2 19.0 175 7-192 3-177 (178)
7 3v2d_H 50S ribosomal protein L 100.0 3.9E-61 1.3E-65 393.0 16.1 170 2-188 1-173 (180)
8 1rl6_A Protein (ribosomal prot 100.0 9.9E-59 3.4E-63 377.8 16.1 168 3-187 1-171 (177)
9 1nkw_E 50S ribosomal protein L 100.0 8.5E-58 2.9E-62 380.5 21.8 170 1-188 28-200 (212)
10 3r8s_G 50S ribosomal protein L 100.0 1.7E-58 5.7E-63 376.2 12.4 159 3-176 1-162 (176)
11 3bbo_I Ribosomal protein L6; l 100.0 8.7E-58 3E-62 383.2 10.0 170 1-187 42-215 (223)
12 2zjr_E 50S ribosomal protein L 100.0 1.2E-58 3.9E-63 379.5 0.3 170 2-188 1-173 (185)
13 2cql_A OK/SW-CL.103, 60S ribos 100.0 4.7E-29 1.6E-33 185.9 7.2 91 1-94 8-98 (100)
14 2cql_A OK/SW-CL.103, 60S ribos 74.2 2.5 8.4E-05 30.5 3.1 23 128-153 16-38 (100)
15 2bol_A TSP36, small heat shock 72.8 18 0.00063 30.9 8.9 46 13-63 125-186 (314)
16 3j21_F 50S ribosomal protein L 61.4 6.9 0.00024 31.2 3.6 22 9-30 121-142 (184)
17 1vq8_E 50S ribosomal protein L 59.5 8 0.00027 30.7 3.7 23 9-31 116-138 (178)
18 1rl6_A Protein (ribosomal prot 52.7 11 0.00038 29.8 3.4 13 155-167 62-74 (177)
19 3u5e_H L8, RP24, YL11, 60S rib 51.9 11 0.00039 30.1 3.4 22 9-30 125-149 (191)
20 3iz5_F 60S ribosomal protein L 50.7 15 0.0005 29.4 3.9 12 156-167 68-79 (190)
21 3v2d_H 50S ribosomal protein L 49.9 12 0.00041 29.6 3.2 12 156-167 64-75 (180)
22 2zkr_e 60S ribosomal protein L 48.6 10 0.00035 30.4 2.6 20 129-151 10-29 (192)
23 1nkw_E 50S ribosomal protein L 46.9 13 0.00044 30.3 3.0 14 155-168 90-103 (212)
24 4a17_E RPL9, 60S ribosomal pro 45.8 13 0.00045 29.6 2.9 22 128-152 9-30 (188)
25 4fei_A Heat shock protein-rela 43.3 44 0.0015 23.1 5.1 45 13-63 29-92 (102)
26 3gla_A Low molecular weight he 41.7 71 0.0024 21.7 6.0 18 13-30 27-44 (100)
27 2zjr_E 50S ribosomal protein L 40.6 13 0.00043 29.7 2.0 23 9-31 114-137 (185)
28 3r8s_G 50S ribosomal protein L 38.3 23 0.00079 27.8 3.2 23 9-31 113-136 (176)
29 4eld_A MJ16.5-P1, small heat s 37.1 76 0.0026 23.8 6.0 18 13-30 79-96 (161)
30 3bbo_I Ribosomal protein L6; l 37.1 12 0.00042 30.7 1.4 21 129-152 51-71 (223)
31 3q9p_A Heat shock protein beta 35.6 23 0.00077 24.0 2.4 18 13-30 20-37 (85)
32 4fqn_A Malcavernin; helical do 34.7 16 0.00056 26.2 1.6 17 153-169 30-46 (98)
33 3j20_L 30S ribosomal protein S 33.6 31 0.0011 24.6 3.0 32 144-175 3-34 (102)
34 3d3c_J 30S ribosomal protein S 32.8 35 0.0012 23.7 3.1 30 144-173 10-39 (87)
35 3r2c_J Protein NUSE, 30S ribos 29.1 53 0.0018 22.6 3.4 30 144-173 5-34 (83)
36 2jug_A TUBC protein; docking d 28.3 21 0.00072 23.8 1.2 26 14-39 17-42 (78)
37 2w7a_A LINE-1 ORF1P; RNA-bindi 27.1 32 0.0011 24.7 2.1 28 152-180 73-100 (100)
38 2y1y_A Alpha-crystallin B chai 26.3 33 0.0011 23.3 2.0 19 13-31 19-37 (90)
39 3r8n_J 30S ribosomal protein S 24.6 35 0.0012 24.0 1.9 29 145-173 2-30 (98)
40 2wj5_A Heat shock protein beta 23.9 38 0.0013 23.5 2.0 20 13-32 24-43 (101)
41 3l1e_A Alpha-crystallin A chai 23.7 38 0.0013 23.8 2.0 19 13-31 25-43 (106)
42 2opv_A KHSRP protein; KH domai 23.2 1E+02 0.0035 20.5 4.1 21 146-167 62-82 (85)
43 2ctf_A Vigilin; K homology typ 21.7 1.5E+02 0.005 20.7 4.8 32 134-167 58-89 (102)
44 3v5w_G G gamma-I, guanine nucl 21.5 23 0.00078 24.4 0.3 19 151-169 30-48 (77)
45 3u5c_U 40S ribosomal protein S 20.5 93 0.0032 22.9 3.6 32 144-175 21-52 (121)
46 1vig_A Vigilin; RNA-binding pr 20.2 1.5E+02 0.0051 19.0 4.2 33 134-167 35-69 (71)
47 2ctj_A Vigilin; K homology typ 20.1 1E+02 0.0036 21.3 3.6 34 134-168 48-83 (95)
No 1
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=100.00 E-value=8.1e-73 Score=465.56 Aligned_cols=188 Identities=52% Similarity=0.871 Sum_probs=179.1
Q ss_pred CceecceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEccccccCCcEEEEEeccCChhhhhHHHhHHHHH
Q 029362 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (194)
Q Consensus 1 M~~~~~~~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~Gt~rsli 80 (194)
|++++.++||.||+||+|+++++.|+|+||+|+|+++|+|..+++++.. ++.+.|++|+++|+++|+|||+||||
T Consensus 1 Mk~i~~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~-----~~~l~v~~~~~~kk~~a~~gt~rsli 75 (191)
T 3u5e_H 1 MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVN-----NQLIKVAVHNGGRKHVAALRTVKSLV 75 (191)
T ss_dssp CCEEEEEEEEECCTTCEEEEETTEEEEEETTEEEEEECTTTCCEEEEEE-----TTEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred CceeeecccEECCCCcEEEEeCCEEEEEcCCeEEEEEccCCcEEEEEec-----CCeEEEEECCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998667776322 58899999999999999999999999
Q ss_pred hhheeeeccceEEEEEEEEEEecceeEe--cCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHHH
Q 029362 81 GNLITGVTKGYRYKMRFVYAHFPINASI--GNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVS 158 (194)
Q Consensus 81 ~NmI~GVt~Gf~~~L~lvGvGypira~~--~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~Vg 158 (194)
+|||+|||+||+|+|+++|+||||+|++ +++|+.|+|+||||||||+.++||+||+|+++++++|+|+|+|+|||+||
T Consensus 76 ~NmI~GVt~Gf~~kL~lvgvgyri~a~v~~~~~G~~l~l~n~LG~sh~v~~~ip~Gv~v~v~~~~kteIil~G~Dke~Vg 155 (191)
T 3u5e_H 76 DNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVS 155 (191)
T ss_dssp HHHHHHHHTCEEEEEEEECSSSCCEEEEECSSSCCEEEEECGGGCSSCEEEECCTTEEEEECTTSTTEEEEEESCHHHHH
T ss_pred HhheeeeccCEEEEEEEEEEeeeEEEEEEEcCCCCEEEEEeccCCcccEEEECCCCEEEEECCCCCCEEEEEECCHHHHH
Confidence 9999999999999999999999998988 77899999999999999999999999999999977799999999999999
Q ss_pred HHHHHHhcccccCCCceeeeeceEEEeeeeeeecC
Q 029362 159 RSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGE 193 (194)
Q Consensus 159 q~AA~Ir~~~~~Kgkd~R~f~DGiyv~ek~~~~~~ 193 (194)
|+||+||++|++|+||+|+|||||||+||++++++
T Consensus 156 q~AA~Irq~~~vk~kD~R~FlDGiyv~ek~~~~~~ 190 (191)
T 3u5e_H 156 QNAADLQQICRVRNKDIRKFLDGIYVSHKGFITED 190 (191)
T ss_dssp HHHHHHHHTTCCCSSCTTTCCCEEEEEEEEESSSC
T ss_pred HHHHHHHhhcccCCCcccEeecCeEEEEeeEEEec
Confidence 99999999999999999999999999999999876
No 2
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=100.00 E-value=8.7e-73 Score=465.05 Aligned_cols=189 Identities=82% Similarity=1.255 Sum_probs=179.7
Q ss_pred CceecceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEccccccCCcEEEEEeccCChhhhhHHHhHHHHH
Q 029362 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (194)
Q Consensus 1 M~~~~~~~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~Gt~rsli 80 (194)
|++++.++||.||+||+|+++++.|+|+||+|+|+++|+|..+++.+.. +++.+.|++|+++|+++|+|||+||||
T Consensus 1 Mk~i~~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~----~~~~l~v~~~~~~kk~~a~~gt~rsli 76 (190)
T 3iz5_F 1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLE----GGRKLQVDAWFGTRRTMAAIRTAISHV 76 (190)
T ss_dssp CCCCCCCEEEECCTTCEEEEETTEEEEEETTEEEEEECCCTTEEEEEET----TTTEEEEEESCCCHHHHHHHHHHHHHH
T ss_pred CcccccCccEECCCCCEEEEeCCEEEEECCCceEEEEccCCcEEEEEEc----CCCEEEEEECCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987678888532 258999999999999999999999999
Q ss_pred hhheeeeccceEEEEEEEEEEecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHHHHH
Q 029362 81 GNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRS 160 (194)
Q Consensus 81 ~NmI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~Vgq~ 160 (194)
+|||+|||+||+|+|+++|+|||+.|.++++|+.|+|+||||||||+.++||+||+|+++++++|+|+|+|+|||+|||+
T Consensus 77 ~NmI~GVt~Gf~~kL~lvgvgyr~~~~i~~~G~~l~l~N~LG~sh~v~~~ip~GV~v~v~~~~k~eIil~G~Dke~Vgq~ 156 (190)
T 3iz5_F 77 QNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRS 156 (190)
T ss_dssp HHHHHHHHTCEEEEEEEECSSSCCEEEEETTTTEEEEESGGGCSSCEEEECCSSCEEEECCTTTCEEEEEESCHHHHHHH
T ss_pred HhheeeeccCEEEEEEEEEEcccceeEEccCCCEEEEEecCCccccEEEECCCCeEEEEcCCCCCEEEEEECCHHHHHHH
Confidence 99999999999999999999998878777789999999999999999999999999999998778999999999999999
Q ss_pred HHHHhcccccCCCceeeeeceEEEeeeeeeecC
Q 029362 161 AALINQKCHVKNKDIRKFLDGIYVSEKSTILGE 193 (194)
Q Consensus 161 AA~Ir~~~~~Kgkd~R~f~DGiyv~ek~~~~~~ 193 (194)
||+||++|++|+||+|+|||||||+||++++++
T Consensus 157 AA~Irq~~~vk~kD~R~F~DGiyv~ek~~~~~~ 189 (190)
T 3iz5_F 157 AALINQKCHVKNKDIRKFLDGIYVSDKGTITED 189 (190)
T ss_dssp HHHHHHHTCCCSSCTTTCCCEEEECCCCCCCCC
T ss_pred HHHHHhhccccCCcccEeecCEEEEeeeEEecc
Confidence 999999999999999999999999999999876
No 3
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=100.00 E-value=9.3e-73 Score=464.22 Aligned_cols=188 Identities=41% Similarity=0.790 Sum_probs=177.6
Q ss_pred CceecceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEccccccCCcEEEEEeccCChhhhhHHHhHHHHH
Q 029362 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (194)
Q Consensus 1 M~~~~~~~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~Gt~rsli 80 (194)
|++++.++||.||+||+|+++++.|+|+||+|+|+++|+|+++++.+. + ++.+.|++|+++|+++|+|||+||||
T Consensus 1 Mk~i~~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~-~----~~~l~v~~~~~~kk~~a~~gt~rsli 75 (188)
T 4a17_E 1 MRHLLTEVNVPIPDKVTITAKQRVVEVKGPLGTIKRAFRYASVDIQKP-T----ADNVKLQIWQASRKERAVLQSIASQI 75 (188)
T ss_dssp CCEEEEEEECCCCTTCEEEEETTEEEEEETTEEEEEECTTSCCEECCC-B----TTBCEEEEEEECHHHHHHHHHHHHHH
T ss_pred CceeeecccEECCCCcEEEEeCCEEEEEcCCeEEEEEccCCeEEEEEc-c----CCeEEEEECCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999867788742 2 58899999999999999999999999
Q ss_pred hhheeeeccceEEEEEEEEEEecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHHHHH
Q 029362 81 GNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRS 160 (194)
Q Consensus 81 ~NmI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~Vgq~ 160 (194)
+|||+|||+||+|+|+++|+|||+.|.++++|+.|.|+|+||||||+.++||+||+|++++++||+|+|+|+|||+|||+
T Consensus 76 ~NmI~GVt~Gf~~kL~lvgvgyr~~~~v~~~G~~l~l~N~LG~sh~v~~~ip~gv~v~v~~~~k~eIil~G~Dke~Vgq~ 155 (188)
T 4a17_E 76 KNMIRGVTEGYKFKMKLAFAHFPIQEAVAKDGSSIEIKHFLGEKRIRRIQALPGVKISRKDEEKNTLTLQGIDLNNVSQT 155 (188)
T ss_dssp HHHHHHHHSCEEEEEEEECSSSCCEEEECSSSCEEEEECGGGCCCEEEEECCTTCEEECCTTSSSEEEEEESCHHHHHHH
T ss_pred HhheEeeccCeEEEEEEEEEcccceEEEccCCCEEEEEeccCCcccEEEECCCCeEEEECCCCCCEEEEEEcCHHHHHHH
Confidence 99999999999999999999998778888789999999999999999999999999999998789999999999999999
Q ss_pred HHHHhcccccCCCceeeeeceEEEeeeeeeecC
Q 029362 161 AALINQKCHVKNKDIRKFLDGIYVSEKSTILGE 193 (194)
Q Consensus 161 AA~Ir~~~~~Kgkd~R~f~DGiyv~ek~~~~~~ 193 (194)
||+||++|++|+||+|+|||||||+||++++++
T Consensus 156 AA~Ir~~~~vk~kD~R~F~DGiyv~ek~~~~~~ 188 (188)
T 4a17_E 156 CALIHQSCLVKEKDIRQFLDGIYVSDKRLAMNE 188 (188)
T ss_dssp HHHHHHHTCCCSSCHHHHCCEEEEEEEEECC--
T ss_pred HHHHHhhcccCCCcccEeecCeEEEEeEEEecC
Confidence 999999999999999999999999999998764
No 4
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.2e-71 Score=459.07 Aligned_cols=188 Identities=59% Similarity=0.946 Sum_probs=162.3
Q ss_pred CceecceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEccccccCCcE---EEEEeccCChhhhhHHHhHH
Q 029362 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRK---LKIDAWFGSRKTSAAIRTAL 77 (194)
Q Consensus 1 M~~~~~~~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~---l~v~~~~~~k~~~a~~Gt~r 77 (194)
|++++.+.||.||+||+|+++++.|+|+||+|+|+++|+++.+++.++ ++. +.+++|+++++++|+|||+|
T Consensus 1 Mk~~~~k~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~~~v~i~~~------~~~~~~i~v~~~~~~k~~~a~~Gt~r 74 (192)
T 2zkr_e 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLL------GKKKKRLRVDKWWGNRKELATVRTIC 74 (192)
T ss_dssp ---------CCCCTTCEEEEETTEEEEEETTEEEEEECCSSSCEEEEE------TTTTCEEEEECSCCCHHHHHHHHHHH
T ss_pred CCcccccCcEEcCCCCEEEEeCCEEEEECCCeEEEEEeCCCCEEEEEe------cCceeEEEEEcCCCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999866777733 355 99999999999999999999
Q ss_pred HHHhhheeeeccceEEEEEEEEEEecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHH
Q 029362 78 SHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELV 157 (194)
Q Consensus 78 sli~NmI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~V 157 (194)
|||+|||+|||+||+++|+++|+|||+.+.++++|+.|.|+|+||||||+.++||+||+++++++++|+|+|+|+|||+|
T Consensus 75 sli~NmI~GVt~Gf~~~L~lvGvGyra~v~~e~~g~~l~l~N~LG~Sh~v~~~iP~gv~v~v~~~~~t~I~v~GiDKq~V 154 (192)
T 2zkr_e 75 SHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELV 154 (192)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECSSSCCEEEECTTCSEEEEESGGGCSSCEEEECCSSCEEEECSSCSSEEEEEESCHHHH
T ss_pred HHHhCEEEeeccCcEEEEEEEEecceeEEEEccCCCEEEEeCcCCCcccEEeeCCCCeEEEEcCCCCCEEEEEeCCHHHH
Confidence 99999999999999999999999996555587789999999999999999999999999999987669999999999999
Q ss_pred HHHHHHHhcccccCCCceeeeeceEEEeeeeeeecCC
Q 029362 158 SRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE 194 (194)
Q Consensus 158 gq~AA~Ir~~~~~Kgkd~R~f~DGiyv~ek~~~~~~~ 194 (194)
|||||+||++|++||||+|+|||||||+||+++.++|
T Consensus 155 gq~AA~IR~~~~vk~kD~R~F~Dgiyv~~k~~~~~~~ 191 (192)
T 2zkr_e 155 SNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQAD 191 (192)
T ss_dssp HHHHHHHHHHTCCSSSCTTTCCCEEEEEEC-------
T ss_pred HHHHHHHHhhCcCCCCCccEeecCEEEEEeccccccC
Confidence 9999999999999999999999999999999888765
No 5
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=8.3e-70 Score=445.37 Aligned_cols=178 Identities=38% Similarity=0.625 Sum_probs=168.4
Q ss_pred eecceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEccccccCCcEEEEEeccCChhhhhHHHhHHHHHhh
Q 029362 3 TILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGN 82 (194)
Q Consensus 3 ~~~~~~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~Gt~rsli~N 82 (194)
....++||.||+||+|+++++.|+|+||+|+|+++|+|+++++.++ ++.+.|++|+++|+++|+|||+||||+|
T Consensus 4 ~~~~~~~I~IP~gV~v~i~~~~V~VkGpkG~L~~~~~~~~v~i~~~------~~~l~v~~~~~~kk~~a~~gt~rsli~N 77 (184)
T 3j21_F 4 DAWIREEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFTE------DGNVVIYKDFPRRKDVAIARTFAAHIRN 77 (184)
T ss_dssp CSSCEEEEECCSSCEEEESSSEEEEECSSCEEEEECCCTTCEEEEE------TTEEEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred chheeEEEeCCCCcEEEEeCCEEEEEcCCeEEEEEecCCcEEEEEe------CCEEEEEECCCCHHHHHHHHHHHHHHHh
Confidence 3456889999999999999999999999999999998667888843 4889999999999999999999999999
Q ss_pred heeeeccceEEEEEEEEEEecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHHHHHHH
Q 029362 83 LITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAA 162 (194)
Q Consensus 83 mI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~Vgq~AA 162 (194)
||+|||+||+|+|+++|+||||||++ +|+.|+|+||||||||+.++||+||+|++++ ++|+|+|+|||+|||+||
T Consensus 78 mI~GVt~Gf~~kL~lvgvgypira~~--~g~~l~l~n~LG~sh~v~~~ip~gv~v~v~~---~~Iil~G~Dke~Vgq~AA 152 (184)
T 3j21_F 78 MIKGVTEGFTYKLKVVYSHFPISVKV--QGDEVIIENFLGEKAPRKAKILPGVTVKVRG---QEIIVEGIDKEAVGQTAA 152 (184)
T ss_dssp HHHHHHTCEEEEEEEECSSSCCEEEE--ETTEEEEECGGGCSSCEEEECCTTEEEEEET---TEEEEEESCHHHHHHHHH
T ss_pred hheeeccCeEEEEEEEEecccceEEE--cCCEEEEEecCCccccEEEECCCCeEEEecC---CEEEEEECCHHHHHHHHH
Confidence 99999999999999999999999999 7999999999999999999999999999997 699999999999999999
Q ss_pred HHhcccccCCCceeeeeceEEEeeeeeee
Q 029362 163 LINQKCHVKNKDIRKFLDGIYVSEKSTIL 191 (194)
Q Consensus 163 ~Ir~~~~~Kgkd~R~f~DGiyv~ek~~~~ 191 (194)
+||++|+|||||+|+|||||||+||+...
T Consensus 153 ~Ir~~~~vK~KDiR~F~DGiyv~ek~~~~ 181 (184)
T 3j21_F 153 NIEQATRITKWDRRIFQDGIYIVEKAGKP 181 (184)
T ss_dssp HHHHHHCCCSSCSSSCCCEEEESCSSSCC
T ss_pred HHhhccccCCCcccEeeCCEEEEecCccc
Confidence 99999999999999999999999998554
No 6
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=100.00 E-value=3.7e-69 Score=439.21 Aligned_cols=175 Identities=32% Similarity=0.536 Sum_probs=163.9
Q ss_pred eeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEccccccCCcEEEEEeccCChhhhhHHHhHHHHHhhheee
Q 029362 7 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITG 86 (194)
Q Consensus 7 ~~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~Gt~rsli~NmI~G 86 (194)
++||.||+||+|+++++.|+|+||+|+|+++|+|..+++.++ ++.+.+++|+++++++|+|||+||||+|||+|
T Consensus 3 ~~pI~IP~gV~v~i~~~~vtVkGpkG~L~~~~~~~~v~i~~~------~~~i~v~~~~~~k~~~a~~Gt~rsli~Nmi~G 76 (178)
T 1vq8_E 3 RVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVD------GDTVVIESDEDNAKTMSTIGTFQSHIENMFHG 76 (178)
T ss_dssp EEEEECCTTCEEEEETTEEEEEETTEEEEEECCCTTCEEEEE------TTEEEEECSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cccEEcCCCCEEEEeCCEEEEECCCeEEEEEEECCeEEEEEE------CCEEEEEcCCCCHHHHHHHHHHHHHHcCEEEE
Confidence 579999999999999999999999999999995547888733 48899999999999999999999999999999
Q ss_pred eccceEEEEEEEEEEecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHHHHHHHHHhc
Q 029362 87 VTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQ 166 (194)
Q Consensus 87 Vt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~Vgq~AA~Ir~ 166 (194)
||+||+++|+++|+||||||++ +|+.|+|+|+||||||+.+++|+||++++++ |+|+|+|+|||+||||||+||+
T Consensus 77 Vt~Gf~~~L~ivGvGypira~~--~g~~l~l~N~LG~shpv~~~ip~gi~v~v~~---~~I~v~G~Dkq~Vgq~AA~Ir~ 151 (178)
T 1vq8_E 77 VTEGWEYGMEVFYSHFPMQVNV--EGDEVVIENFLGEKAPRRTTIHGDTDVEIDG---EELTVSGPDIEAVGQTAADIEQ 151 (178)
T ss_dssp HHTCEEEEEEEECSSSCCEEEE--ETTEEEEESGGGCSSCEEEECCTTCEEEEET---TEEEEEESCHHHHHHHHHHHHH
T ss_pred EccCeEEEEEEEeeCCceEEEE--cCCEEEEEccccccccEEEeCCCCeEEEEeC---CEEEEEECCHHHHHHHHHHHhc
Confidence 9999999999999999999999 7899999999999999999999999999996 8999999999999999999999
Q ss_pred ccccCCCceeeeeceEEEeeeeeeec
Q 029362 167 KCHVKNKDIRKFLDGIYVSEKSTILG 192 (194)
Q Consensus 167 ~~~~Kgkd~R~f~DGiyv~ek~~~~~ 192 (194)
+|++||||+|+|+|||||+||++..+
T Consensus 152 ~r~pKGKGIr~F~DGiyi~~k~~~~~ 177 (178)
T 1vq8_E 152 LTRINDKDVRVFQDGVYITRKPNRGD 177 (178)
T ss_dssp TTCCSSSCTTTCCCEEEEEECC----
T ss_pred cCCCCCCceeEEECCEEEEecccccC
Confidence 99999999999999999999997654
No 7
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=100.00 E-value=3.9e-61 Score=392.97 Aligned_cols=170 Identities=19% Similarity=0.295 Sum_probs=162.6
Q ss_pred ceecceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEccccccCCcEEEEEeccCChhhhhHHHhHHHHHh
Q 029362 2 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVG 81 (194)
Q Consensus 2 ~~~~~~~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~Gt~rsli~ 81 (194)
++++|++||.||+||+|+++++.|+|+||+|+|+++|+| .+++.++ ++.|.|++|+++++++|+|||+||||+
T Consensus 1 mSrigk~pI~IP~gV~v~i~~~~v~VkGpkG~L~~~~~~-~v~i~~~------~~~l~v~~~~~~kk~~a~~gt~rsli~ 73 (180)
T 3v2d_H 1 MSRIGRLPIPVPKGVSVEVAPGRVKVKGPKGELEVPVSP-EMRVVVE------EGVVRVERPSDERRHKSLHGLTRTLIA 73 (180)
T ss_dssp -CCTTTSCEECCTTCEEEEETTEEEEECSSCEEEEECCT-TSEEEEE------TTEEEEECSCSCHHHHHHHHHHHHHHH
T ss_pred CCcccCceeeCCCCcEEEEeCCEEEEEeCCcEEEEEeCC-CEEEEEE------CCEEEEEECCCcHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999999999999 8888843 489999999999999999999999999
Q ss_pred hheeeeccceEEEEEEEEEEecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHHHHHH
Q 029362 82 NLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSA 161 (194)
Q Consensus 82 NmI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~Vgq~A 161 (194)
|||+|||+||+++|+++|+|| ||++ +|+.|+| +||||||+.++||+||+|+++++ |+|+|+|+|||+|||||
T Consensus 74 NmI~GVt~Gf~~kL~lvgvgy--ra~~--~g~~l~l--~LG~sh~v~~~ip~gv~v~v~~~--t~Iil~G~Dke~Vgq~A 145 (180)
T 3v2d_H 74 NAVKGVSEGYSKELLIKGIGY--RARL--VGRALEL--TVGFSHPVVVEPPEGITFEVPEP--TRVRVSGIDKQKVGQVA 145 (180)
T ss_dssp HHHHHHHTCEEEEEEEESTTC--EEEE--ETTEEEE--ECSSSSCEEECCCTTCEEECSST--TEEEEEESCHHHHHHHH
T ss_pred hhEEeecCCcEEEEEEEEEee--EEEE--CCCEEEE--EecCCeeEEEECCCCeEEEECCC--CEEEEEECcHHHHHHHH
Confidence 999999999999999999999 7999 7999999 99999999999999999999998 99999999999999999
Q ss_pred HHHhcccc---cCCCceeeeeceEEEeeee
Q 029362 162 ALINQKCH---VKNKDIRKFLDGIYVSEKS 188 (194)
Q Consensus 162 A~Ir~~~~---~Kgkd~R~f~DGiyv~ek~ 188 (194)
|+||+||+ |||||+|. ||.||.+|.
T Consensus 146 A~Ir~~r~PepYKGKGIry--~~e~I~~K~ 173 (180)
T 3v2d_H 146 ANIRAIRKPSAYHEKGIYY--AGEPVRLKP 173 (180)
T ss_dssp HHHHHHTCCCSSSSCEEEE--TTCCCCCCC
T ss_pred HHhcccCCCCCcCCCcccC--CCEEEEEeC
Confidence 99999999 99999996 999999986
No 8
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=100.00 E-value=9.9e-59 Score=377.78 Aligned_cols=168 Identities=24% Similarity=0.423 Sum_probs=150.9
Q ss_pred eecceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEccccccCCcEEEEEeccCChhhhhHHHhHHHHHhh
Q 029362 3 TILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGN 82 (194)
Q Consensus 3 ~~~~~~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~Gt~rsli~N 82 (194)
+++|+.||.||+||+|+++++.|+|+||+|+|+++|++ ++++. .+ ++.+.+++|+++++++|+|||+||||+|
T Consensus 1 srigk~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~-~v~i~--~~----~~~l~v~~~~~~k~~~a~~Gt~rsli~N 73 (177)
T 1rl6_A 1 SRVGKKPIEIPAGVTVTVNGNTVTVKGPKGELTRTFHP-DMTIT--VE----GNVITVTRPSDEKHHRALHGTTRSLLAN 73 (177)
T ss_dssp ------CEECCTTCEEEEETTEEEEEETTEEEEEECCT-TCEEE--EE----TTEEEEECSCCSHHHHHHHHHHHHHHHH
T ss_pred CcccccceEcCCCCEEEEeCCEEEEECCCeEEEEEcCC-CEEEE--Ee----CCEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999999999999988 88887 42 5889999999999999999999999999
Q ss_pred heeeeccceEEEEEEEEEEecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHHHHHHH
Q 029362 83 LITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAA 162 (194)
Q Consensus 83 mI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~Vgq~AA 162 (194)
||+|||+||+++|+++|+|| ||++ +|+.|+| +||||||+.++||+||+++++++ |+|+|+|+|||+||||||
T Consensus 74 mi~GVt~Gf~~~L~lvGvGy--ra~~--~G~~l~l--~LG~Shpv~~~iP~gi~v~v~~~--t~I~v~G~Dkq~Vgq~AA 145 (177)
T 1rl6_A 74 MVEGVSKGYEKALELVGVGY--RASK--QGKKLVL--SVGYSHPVEIEPEEGLEIEVPSQ--TKIIVKGADKQRVGELAA 145 (177)
T ss_dssp HHHHHHTCEEEEEEEESTTC--EEEE--ETTEEEE--ESSSSSCEEECCCTTEEEEEEET--TEEEEEESCHHHHHHHHH
T ss_pred EEEeEcCCcEEEEEEEeece--EEEe--cCCEEEE--EecCCccEEEeCCCCcEEEECCC--CEEEEEeCCHHHHHHHHH
Confidence 99999999999999999999 7999 7999999 99999999999999999999997 999999999999999999
Q ss_pred HHhcccc---cCCCceeeeeceEEEeee
Q 029362 163 LINQKCH---VKNKDIRKFLDGIYVSEK 187 (194)
Q Consensus 163 ~Ir~~~~---~Kgkd~R~f~DGiyv~ek 187 (194)
+||+||+ ||||||| ..|-+|-.|
T Consensus 146 ~Ir~~R~PepYKGKGI~--y~~E~i~~K 171 (177)
T 1rl6_A 146 NIRAVRPPEPYKGKGIR--YEGELVRLK 171 (177)
T ss_dssp HHHTTSCCCTTTCCEEE--ETTCCCCC-
T ss_pred HHhccCCCCCcCCCcEe--ECCeEEEEc
Confidence 9999998 9999998 344455443
No 9
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=100.00 E-value=8.5e-58 Score=380.51 Aligned_cols=170 Identities=24% Similarity=0.398 Sum_probs=158.3
Q ss_pred CceecceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEccccccCCcEEEEEeccCChhhhhHHHhHHHHH
Q 029362 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (194)
Q Consensus 1 M~~~~~~~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~Gt~rsli 80 (194)
|.+ +|+.||.||+||+|+++++.|+|+||+|+|+++|++ ++++. .+ ++.|.|++|+++++++|+|||+||||
T Consensus 28 MSR-Igk~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~~-~v~i~--~e----~~~i~v~~~~~~k~~ra~~Gt~rslI 99 (212)
T 1nkw_E 28 MSR-IGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNT-ELTVR--QD----GDQLLVERPSDAQKHRALHGLTRTLV 99 (212)
T ss_pred ccc-ccccceecCCCcEEEEeCCEEEEECCCEEEEEECCC-CeEEE--EE----CCEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 544 599999999999999999999999999999999988 88887 42 58899999999999999999999999
Q ss_pred hhheeeeccceEEEEEEEEEEecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHHHHH
Q 029362 81 GNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRS 160 (194)
Q Consensus 81 ~NmI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~Vgq~ 160 (194)
+|||+|||+||+++|+++|+|| ||++ +|+.|+| +||||||+.++||+||+|+++++ |+|+|+|+|||+||||
T Consensus 100 ~NMI~GVt~Gf~kkLelvGvGY--ra~~--~G~~L~L--~LG~SHpv~~~iP~GI~v~v~~~--t~Iiv~GiDKq~VGq~ 171 (212)
T 1nkw_E 100 ANAVKGVSDGYTINLELRGVGF--RAKL--TGKALEM--NIGYSHPVIIEPPAGVTFAVPEP--TRIDVSGIDKQLVGQV 171 (212)
T ss_pred hCEEEeeccCeEEEEEEeeeee--EEEc--CCCEEEE--EccCCccEEEECCCCeEEEeCCC--CEEEEEeCCHHHHHHH
Confidence 9999999999999999999999 7999 8999999 99999999999999999999998 9999999999999999
Q ss_pred HHHHhcccc---cCCCceeeeeceEEEeeee
Q 029362 161 AALINQKCH---VKNKDIRKFLDGIYVSEKS 188 (194)
Q Consensus 161 AA~Ir~~~~---~Kgkd~R~f~DGiyv~ek~ 188 (194)
||+||+||+ ||||||| ..|-+|--|.
T Consensus 172 AA~IR~~R~PEPYKGKGIr--y~~E~I~rK~ 200 (212)
T 1nkw_E 172 AANVRKVRKPDAYHGKGVR--FVGEQIALKA 200 (212)
T ss_pred HHHHhccCCCCCcCCCcEe--ECCeEEEEcC
Confidence 999999998 9999999 5566776554
No 10
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=100.00 E-value=1.7e-58 Score=376.23 Aligned_cols=159 Identities=25% Similarity=0.415 Sum_probs=151.8
Q ss_pred eecceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEccccccCCcEEEEEeccCChhhhhHHHhHHHHHhh
Q 029362 3 TILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGN 82 (194)
Q Consensus 3 ~~~~~~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~Gt~rsli~N 82 (194)
+++|++||.||+||+|+++++.|+|+||+|+|+++|++ ++++.++ ++.+.|++|+++++++|+|||+||||+|
T Consensus 1 Srigk~pI~IP~gV~v~i~~~~V~VkGpkG~L~~~~~~-~v~i~~~------~~~l~v~~~~~~k~~~a~~gt~rsli~N 73 (176)
T 3r8s_G 1 SRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLND-AVEVKHA------DNTLTFGPRDGYADGWAQAGTARALLNS 73 (176)
T ss_dssp CTTTTSCEECCTTCCCEESSSEEECCBTTBCCEEECCS-SCEEEEE------TTEEEEECCTTCSSTHHHHHHHHHHHHH
T ss_pred CCccccceeCCCCcEEEEeCCEEEEEcCCEEEEEECCC-CEEEEEe------CCEEEEEECCCcHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999998 8888843 4889999999999999999999999999
Q ss_pred heeeeccceEEEEEEEEEEecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHHHHHHH
Q 029362 83 LITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAA 162 (194)
Q Consensus 83 mI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~Vgq~AA 162 (194)
||+|||+||+++|+++|+|| ||++ +|+.|.+ +||||||+.++||+||+|+++++ |+|+|+|+|||+||||||
T Consensus 74 mI~GVt~Gf~~kL~lvgvgy--ra~~--~g~~l~l--~LG~sh~v~~~ip~gv~v~v~~~--t~Iil~G~Dke~Vgq~AA 145 (176)
T 3r8s_G 74 MVIGVTEGFTKKLQLVGVGY--RAAV--KGNVINL--SLGFSHPVDHQLPAGITAECPTQ--TEIVLKGADKQVIGQVAA 145 (176)
T ss_dssp TTTHHHHCEEECEEEESTTC--EEEC--SSSEEEE--ECSSSSCEEEECCTTCEEEEEET--TEEEEEESCHHHHHHHHH
T ss_pred HhhhcccCeEEEEEEeeeee--EEEe--CCCEEEE--EecCCeeEEEECCCCeEEEECCC--CEEEEEECcHHHHHHHHH
Confidence 99999999999999999999 7999 7999988 99999999999999999999987 999999999999999999
Q ss_pred HHhcccc---cCCCcee
Q 029362 163 LINQKCH---VKNKDIR 176 (194)
Q Consensus 163 ~Ir~~~~---~Kgkd~R 176 (194)
+||+||+ |||||+|
T Consensus 146 ~Ir~~R~PepYKGKGI~ 162 (176)
T 3r8s_G 146 DLRAYRRPEPYKGKGVR 162 (176)
T ss_dssp HHHHTTCCCSSSCCEEE
T ss_pred HhhccCCCCCccCCcee
Confidence 9999995 9999988
No 11
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=8.7e-58 Score=383.18 Aligned_cols=170 Identities=18% Similarity=0.358 Sum_probs=158.1
Q ss_pred CceecceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEE-EEccccccCCcEEEEEeccCChhhhhHHHhHHHH
Q 029362 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDF-HLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSH 79 (194)
Q Consensus 1 M~~~~~~~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~i~i-~~~~~~~~~~~~l~v~~~~~~k~~~a~~Gt~rsl 79 (194)
+++++|+.||.||+||+|+++++.|+|+||+|+|+++|++ .|++ . .+ ++.|.|++|+++++++|+|||+|||
T Consensus 42 ~mSrigk~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~~-~v~i~~--~e----~~~i~v~~~~~~k~~~a~~Gt~rsl 114 (223)
T 3bbo_I 42 KESRIGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPR-EVELTK--EE----SGFLRVKKTVETRRANQMHGLFRTL 114 (223)
T ss_dssp CCCCCCCCCCCCSTTSCEEESSSEEEECCSSCCEEEECCS-SCEEEE--CS----SSCEEEECSSCCTTHHHHHHHHTTT
T ss_pred ccccccccceecCCCCEEEEeCCEEEEECCCeEEEEEcCC-CEEEEE--ec----CCEEEEEcCCCcHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999988 8888 6 42 5889999999999999999999999
Q ss_pred HhhheeeeccceEEEEEEEEEEecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHHHH
Q 029362 80 VGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSR 159 (194)
Q Consensus 80 i~NmI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~Vgq 159 (194)
|+|||+|||+||+++|+++|+|| ||++ +|+.|+| +||||||+.++||+||+++++++ |+|+|+|+|||+|||
T Consensus 115 I~NMI~GVt~Gf~kkLelvGvGY--ra~~--~G~~L~L--~LG~SHpv~~~iP~GI~v~v~~~--t~Iii~GiDKq~Vgq 186 (223)
T 3bbo_I 115 TDNMVVGVSKGFEKKLILVGVGY--RATV--DGKELVL--NLGFSHPVKMQIPDSLKVKVEEN--TRITVSGYDKSEIGQ 186 (223)
T ss_dssp TTHHHHHTTTCEEECEECCSTTC--CEEE--CSSEEEE--CSSCSSCEEEECCSSEEEECSST--TBCEEEESSSHHHHH
T ss_pred hhcEEEeeccCcEEEEEEeeece--EEEe--cCCEEEE--EeeCCccEEEECCCCeEEEeCCC--CEEEEEeCCHHHHHH
Confidence 99999999999999999999999 7999 8999999 99999999999999999999998 999999999999999
Q ss_pred HHHHHhcccc---cCCCceeeeeceEEEeee
Q 029362 160 SAALINQKCH---VKNKDIRKFLDGIYVSEK 187 (194)
Q Consensus 160 ~AA~Ir~~~~---~Kgkd~R~f~DGiyv~ek 187 (194)
|||+||+||+ ||||||| ..|-+|-.|
T Consensus 187 ~AA~IR~~R~PEPYKGKGI~--y~~E~I~rK 215 (223)
T 3bbo_I 187 FAATVRKWRPPEPYKGKGVK--YSDEIVRRK 215 (223)
T ss_dssp HHHHTTSSSCCCTTTCCSCE--ETTCCCCCC
T ss_pred HHHHHhccCCCCCcCCCcEe--ECCeEEEEe
Confidence 9999999998 9999999 344455444
No 12
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=100.00 E-value=1.2e-58 Score=379.53 Aligned_cols=170 Identities=24% Similarity=0.385 Sum_probs=153.9
Q ss_pred ceecceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEccccccCCcEEEEEeccCChhhhhHHHhHHHHHh
Q 029362 2 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVG 81 (194)
Q Consensus 2 ~~~~~~~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~Gt~rsli~ 81 (194)
++++|+.||.||+||+|+++++.|+|+||+|+|+++|++ ++++. .+ ++.+.|++|+++++++|+|||+||||+
T Consensus 1 mSrigk~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~-~v~i~--~~----~~~i~v~~~~~~k~~~a~~Gt~rslI~ 73 (185)
T 2zjr_E 1 MSRIGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNT-ELTVR--QD----GDQLLVERPSDAQKHRALHGLTRTLVA 73 (185)
T ss_dssp ----CCCCBCCCTTCCEECCTTCCEECCSSCCCCCCCCS-SSCCB--CC----SSSBBCCCSSCSSHHHHHHHHHHHHHH
T ss_pred CCcccccceecCCCCEEEEeCCEEEEECCCeEEEEEcCC-CEEEE--Ee----CCEEEEECCCCCHHHHHHHHHHHHHhh
Confidence 478999999999999999999999999999999999988 77776 42 577999999999999999999999999
Q ss_pred hheeeeccceEEEEEEEEEEecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHHHHHH
Q 029362 82 NLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSA 161 (194)
Q Consensus 82 NmI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~Vgq~A 161 (194)
|||+|||+||+++|+++|+|| ||++ +|+.|+| +||||||+.++||+||+++++++ |+|+|+|+|||+|||||
T Consensus 74 NmI~GVt~Gf~kkL~lvGvGY--ra~~--~G~~l~l--~LG~Shpv~~~iP~gI~v~v~~~--t~I~l~G~DKq~Vgq~A 145 (185)
T 2zjr_E 74 NAVKGVSDGYTINLELRGVGF--RAKL--TGKALEM--NIGYSHPVIIEPPAGVTFAVPEP--TRIDVSGIDKQLVGQVA 145 (185)
T ss_dssp HHHHHHHHCEEEEEECBSTTC--CCCC--BTTBCBC--CSSCSSCCBCCCCTTEEEECSST--TEEEEEESSHHHHHHHH
T ss_pred cEEeeeccCcEEEEEEeeecc--EEEE--cCCEEEE--EeeCCccEEEECCCCeEEEECCC--CEEEEEecCHHHHHHHH
Confidence 999999999999999999999 6888 7999999 99999999999999999999998 99999999999999999
Q ss_pred HHHhcccc---cCCCceeeeeceEEEeeee
Q 029362 162 ALINQKCH---VKNKDIRKFLDGIYVSEKS 188 (194)
Q Consensus 162 A~Ir~~~~---~Kgkd~R~f~DGiyv~ek~ 188 (194)
|+||+||+ ||||||| ..|-+|-.|.
T Consensus 146 A~Ir~~R~PepYKGKGI~--y~~E~i~~K~ 173 (185)
T 2zjr_E 146 ANVRKVRKPDAYHGKGVR--FVGEQIALKA 173 (185)
T ss_dssp HHHHHHTCCCTTTCCBCC--CSSCCCCCCC
T ss_pred HHHhccCCCCCcCCCcEe--ECCeEEEEcC
Confidence 99999998 9999999 4444554443
No 13
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=99.95 E-value=4.7e-29 Score=185.86 Aligned_cols=91 Identities=46% Similarity=0.853 Sum_probs=80.2
Q ss_pred CceecceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEccccccCCcEEEEEeccCChhhhhHHHhHHHHH
Q 029362 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (194)
Q Consensus 1 M~~~~~~~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~Gt~rsli 80 (194)
|+++..++||.||+||+|+++++.|+|+||+|+|+++|+|..|++.++.. ..+.|.|++|+++|+++|+|||+||||
T Consensus 8 Mk~i~~k~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~h~~v~i~~e~~---~~~~i~v~~~~~~k~~ra~~Gt~RslI 84 (100)
T 2cql_A 8 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGK---KKKRLRVDKWWGNRKELATVRTICSHV 84 (100)
T ss_dssp CCCCCCCEEECCCSSCEEEEETTEEEEEETTEEEEEECCSSCCEEEEECS---SSCEEEEECCSSSTHHHHHHHHHHHHH
T ss_pred cccccccCcEEcCCCCEEEEeCCEEEEECCCceEEEEeccCcEEEEEcCC---ceeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 67777799999999999999999999999999999999965788874320 123499999999999999999999999
Q ss_pred hhheeeeccceEEE
Q 029362 81 GNLITGVTKGYRYK 94 (194)
Q Consensus 81 ~NmI~GVt~Gf~~~ 94 (194)
+|||+|||+||+|.
T Consensus 85 ~NMI~GVt~Gf~y~ 98 (100)
T 2cql_A 85 QNMIKGVTLGSGPS 98 (100)
T ss_dssp HHHHHHHHTSCCSC
T ss_pred HhhhEeecCCEEEc
Confidence 99999999999874
No 14
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=74.16 E-value=2.5 Score=30.50 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=19.3
Q ss_pred EEeCCCCeEEEeCCCCCcEEEEEeCc
Q 029362 128 KVDMLDGVTVIRSDKVKDELVLDGND 153 (194)
Q Consensus 128 ~~~iP~gv~v~~~~~~k~~i~l~G~D 153 (194)
.++||+||+|++.+ +.++++|.-
T Consensus 16 pI~IP~gV~V~i~~---~~VtVKGPk 38 (100)
T 2cql_A 16 TVDIPENVDITLKG---RTVIVKGPR 38 (100)
T ss_dssp EECCCSSCEEEEET---TEEEEEETT
T ss_pred cEEcCCCCEEEEeC---CEEEEECCC
Confidence 46889999999987 789999875
No 15
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=72.82 E-value=18 Score=30.94 Aligned_cols=46 Identities=13% Similarity=0.222 Sum_probs=31.5
Q ss_pred CCCcEEEEeCcEEEEEcCC----------cEEEEEecCC-c-----EEEEEccccccCCcEEEEEec
Q 029362 13 PDGVKVKINAKVIEVEGPR----------GKLSRDFKHL-N-----LDFHLMTDEETGKRKLKIDAW 63 (194)
Q Consensus 13 P~~V~v~i~~~~i~vkGp~----------G~l~~~~~~~-~-----i~i~~~~~~~~~~~~l~v~~~ 63 (194)
|+.++|+++++.++|+|-+ |+.++.|.-+ . ++..+. .++.|.|...
T Consensus 125 ~edI~V~v~~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~~~-----~nGVL~I~lP 186 (314)
T 2bol_A 125 AEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATIT-----TDDVLVIEAP 186 (314)
T ss_dssp TTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEEC-----SSSEEEEEEE
T ss_pred hHHeEEEEECCEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEEEe-----CCCEEEEEEe
Confidence 5799999999999999976 4555555421 2 444543 1588888754
No 16
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=61.40 E-value=6.9 Score=31.19 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=13.4
Q ss_pred eEEcCCCcEEEEeCcEEEEEcC
Q 029362 9 TMDIPDGVKVKINAKVIEVEGP 30 (194)
Q Consensus 9 ~I~IP~~V~v~i~~~~i~vkGp 30 (194)
.+++|+||++++.++.|.++|.
T Consensus 121 ~~~ip~gv~v~v~~~~Iil~G~ 142 (184)
T 3j21_F 121 KAKILPGVTVKVRGQEIIVEGI 142 (184)
T ss_dssp EEECCTTEEEEEETTEEEEEES
T ss_pred EEECCCCeEEEecCCEEEEEEC
Confidence 3567777777765545555553
No 17
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=59.48 E-value=8 Score=30.68 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=16.4
Q ss_pred eEEcCCCcEEEEeCcEEEEEcCC
Q 029362 9 TMDIPDGVKVKINAKVIEVEGPR 31 (194)
Q Consensus 9 ~I~IP~~V~v~i~~~~i~vkGp~ 31 (194)
.+++|+||++++.++.|+++|..
T Consensus 116 ~~~ip~gi~v~v~~~~I~v~G~D 138 (178)
T 1vq8_E 116 RTTIHGDTDVEIDGEELTVSGPD 138 (178)
T ss_dssp EEECCTTCEEEEETTEEEEEESC
T ss_pred EEeCCCCeEEEEeCCEEEEEECC
Confidence 56788888888866666666643
No 18
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=52.70 E-value=11 Score=29.79 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=7.2
Q ss_pred hHHHHHHHHHhcc
Q 029362 155 ELVSRSAALINQK 167 (194)
Q Consensus 155 q~Vgq~AA~Ir~~ 167 (194)
...|.++|.|...
T Consensus 62 a~~Gt~rsli~Nm 74 (177)
T 1rl6_A 62 ALHGTTRSLLANM 74 (177)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCE
Confidence 4455566666554
No 19
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=51.95 E-value=11 Score=30.06 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=13.1
Q ss_pred eEEcCCCcEEEEeC---cEEEEEcC
Q 029362 9 TMDIPDGVKVKINA---KVIEVEGP 30 (194)
Q Consensus 9 ~I~IP~~V~v~i~~---~~i~vkGp 30 (194)
.+++|+||++++.+ ..|.++|.
T Consensus 125 ~~~ip~Gv~v~v~~~~kteIil~G~ 149 (191)
T 3u5e_H 125 NVPVRDGVTIEFSTNVKDEIVLSGN 149 (191)
T ss_dssp EEECCTTEEEEECTTSTTEEEEEES
T ss_pred EEECCCCEEEEECCCCCCEEEEEEC
Confidence 34567777777655 45555554
No 20
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=50.71 E-value=15 Score=29.40 Aligned_cols=12 Identities=0% Similarity=0.097 Sum_probs=6.6
Q ss_pred HHHHHHHHHhcc
Q 029362 156 LVSRSAALINQK 167 (194)
Q Consensus 156 ~Vgq~AA~Ir~~ 167 (194)
.+|-++|.|+..
T Consensus 68 ~~gt~rsli~Nm 79 (190)
T 3iz5_F 68 AIRTAISHVQNL 79 (190)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 455556655554
No 21
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=49.85 E-value=12 Score=29.65 Aligned_cols=12 Identities=25% Similarity=0.271 Sum_probs=7.7
Q ss_pred HHHHHHHHHhcc
Q 029362 156 LVSRSAALINQK 167 (194)
Q Consensus 156 ~Vgq~AA~Ir~~ 167 (194)
.+|-++|.|+..
T Consensus 64 ~~gt~rsli~Nm 75 (180)
T 3v2d_H 64 LHGLTRTLIANA 75 (180)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 456677777654
No 22
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=48.64 E-value=10 Score=30.39 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=10.7
Q ss_pred EeCCCCeEEEeCCCCCcEEEEEe
Q 029362 129 VDMLDGVTVIRSDKVKDELVLDG 151 (194)
Q Consensus 129 ~~iP~gv~v~~~~~~k~~i~l~G 151 (194)
++||+||+|++.+ +.++++|
T Consensus 10 I~IP~gV~V~i~~---~~VtVkG 29 (192)
T 2zkr_e 10 VDIPENVDITLKG---RTVIVKG 29 (192)
T ss_dssp CCCCTTCEEEEET---TEEEEEE
T ss_pred EEcCCCCEEEEeC---CEEEEEC
Confidence 4566666666543 3444444
No 23
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=46.93 E-value=13 Score=30.34 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=8.0
Q ss_pred hHHHHHHHHHhccc
Q 029362 155 ELVSRSAALINQKC 168 (194)
Q Consensus 155 q~Vgq~AA~Ir~~~ 168 (194)
...|.++|.|...-
T Consensus 90 a~~Gt~rslI~NMI 103 (212)
T 1nkw_E 90 ALHGLTRTLVANAV 103 (212)
T ss_pred HHHHHHHHHhhCEE
Confidence 35566666666553
No 24
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=45.81 E-value=13 Score=29.65 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=12.9
Q ss_pred EEeCCCCeEEEeCCCCCcEEEEEeC
Q 029362 128 KVDMLDGVTVIRSDKVKDELVLDGN 152 (194)
Q Consensus 128 ~~~iP~gv~v~~~~~~k~~i~l~G~ 152 (194)
.++||+||+|++.+ ..++++|.
T Consensus 9 ~I~IP~gV~v~i~~---~~V~VkGP 30 (188)
T 4a17_E 9 NVPIPDKVTITAKQ---RVVEVKGP 30 (188)
T ss_dssp ECCCCTTCEEEEET---TEEEEEET
T ss_pred cEECCCCcEEEEeC---CEEEEEcC
Confidence 45667777776654 44555554
No 25
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=43.33 E-value=44 Score=23.14 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=30.1
Q ss_pred CCCcEEEEeCcEEEEEcCC-------------cEEEEEecCC------cEEEEEccccccCCcEEEEEec
Q 029362 13 PDGVKVKINAKVIEVEGPR-------------GKLSRDFKHL------NLDFHLMTDEETGKRKLKIDAW 63 (194)
Q Consensus 13 P~~V~v~i~~~~i~vkGp~-------------G~l~~~~~~~------~i~i~~~~~~~~~~~~l~v~~~ 63 (194)
|++++|+++++.++|+|-+ |...+.|.-+ .++..+. ++.|.|...
T Consensus 29 ~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~~------~GvL~I~lp 92 (102)
T 4fei_A 29 AGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASLA------GGVLTVRFE 92 (102)
T ss_dssp GGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEEE------TTEEEEEEE
T ss_pred hHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEEE------CCEEEEEEE
Confidence 3689999999999999843 6666655421 1444432 477777643
No 26
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=41.69 E-value=71 Score=21.70 Aligned_cols=18 Identities=17% Similarity=0.652 Sum_probs=15.8
Q ss_pred CCCcEEEEeCcEEEEEcC
Q 029362 13 PDGVKVKINAKVIEVEGP 30 (194)
Q Consensus 13 P~~V~v~i~~~~i~vkGp 30 (194)
|++++|+++++.++|+|-
T Consensus 27 ~edi~v~~~~~~L~I~g~ 44 (100)
T 3gla_A 27 PSQIEVQMDKGILSIRGE 44 (100)
T ss_dssp GGGCEEEEETTEEEEEEE
T ss_pred HHHEEEEEECCEEEEEEE
Confidence 378999999999999984
No 27
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=40.64 E-value=13 Score=29.67 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=17.1
Q ss_pred eEEcCCCcEEEEeCc-EEEEEcCC
Q 029362 9 TMDIPDGVKVKINAK-VIEVEGPR 31 (194)
Q Consensus 9 ~I~IP~~V~v~i~~~-~i~vkGp~ 31 (194)
.++||+||++++.++ .|+++|..
T Consensus 114 ~~~iP~gI~v~v~~~t~I~l~G~D 137 (185)
T 2zjr_E 114 IIEPPAGVTFAVPEPTRIDVSGID 137 (185)
T ss_dssp BCCCCTTEEEECSSTTEEEEEESS
T ss_pred EEECCCCeEEEECCCCEEEEEecC
Confidence 457889999988654 77777754
No 28
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=38.28 E-value=23 Score=27.85 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=14.6
Q ss_pred eEEcCCCcEEEEeC-cEEEEEcCC
Q 029362 9 TMDIPDGVKVKINA-KVIEVEGPR 31 (194)
Q Consensus 9 ~I~IP~~V~v~i~~-~~i~vkGp~ 31 (194)
.+++|+||+|++.. ..|+++|..
T Consensus 113 ~~~ip~gv~v~v~~~t~Iil~G~D 136 (176)
T 3r8s_G 113 DHQLPAGITAECPTQTEIVLKGAD 136 (176)
T ss_dssp EEECCTTCEEEEEETTEEEEEESC
T ss_pred EEECCCCeEEEECCCCEEEEEECc
Confidence 45678888887743 456666643
No 29
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=37.15 E-value=76 Score=23.80 Aligned_cols=18 Identities=6% Similarity=0.254 Sum_probs=15.8
Q ss_pred CCCcEEEEeCcEEEEEcC
Q 029362 13 PDGVKVKINAKVIEVEGP 30 (194)
Q Consensus 13 P~~V~v~i~~~~i~vkGp 30 (194)
|++|+|+++++.|+|+|-
T Consensus 79 ~edi~V~~~~~~L~I~g~ 96 (161)
T 4eld_A 79 KEDIILNAVGDTLEIRAK 96 (161)
T ss_dssp GGGEEEEEETTEEEEEEE
T ss_pred hHhEEEEEECCEEEEEEE
Confidence 378999999999999983
No 30
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=37.13 E-value=12 Score=30.70 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=13.4
Q ss_pred EeCCCCeEEEeCCCCCcEEEEEeC
Q 029362 129 VDMLDGVTVIRSDKVKDELVLDGN 152 (194)
Q Consensus 129 ~~iP~gv~v~~~~~~k~~i~l~G~ 152 (194)
++||+||+|++.+ +.++++|.
T Consensus 51 I~IP~gV~V~i~~---~~VtVKGP 71 (223)
T 3bbo_I 51 IAVPSNVTIALEG---QDLKVKGP 71 (223)
T ss_dssp CCCSTTSCEEESS---SEEEECCS
T ss_pred eecCCCCEEEEeC---CEEEEECC
Confidence 4667777777654 55666664
No 31
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=35.61 E-value=23 Score=23.97 Aligned_cols=18 Identities=39% Similarity=0.702 Sum_probs=14.8
Q ss_pred CCCcEEEEeCcEEEEEcC
Q 029362 13 PDGVKVKINAKVIEVEGP 30 (194)
Q Consensus 13 P~~V~v~i~~~~i~vkGp 30 (194)
|+.++|++.++.++|+|-
T Consensus 20 ~edi~V~v~~~~L~I~g~ 37 (85)
T 3q9p_A 20 PDELTVKTKDGVVEITGK 37 (85)
T ss_dssp CSEEEEEEETTEEEEEEE
T ss_pred hHHEEEEEECCEEEEEEE
Confidence 578888888888888885
No 32
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=34.68 E-value=16 Score=26.24 Aligned_cols=17 Identities=18% Similarity=0.217 Sum_probs=15.0
Q ss_pred cHhHHHHHHHHHhcccc
Q 029362 153 DIELVSRSAALINQKCH 169 (194)
Q Consensus 153 Dkq~Vgq~AA~Ir~~~~ 169 (194)
+.+.+.||||.||+||-
T Consensus 30 ~~~ElqqFA~Llr~YR~ 46 (98)
T 4fqn_A 30 SSQEIQQFAALLHEYRN 46 (98)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHc
Confidence 46789999999999987
No 33
>3j20_L 30S ribosomal protein S10P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.64 E-value=31 Score=24.61 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=26.9
Q ss_pred CcEEEEEeCcHhHHHHHHHHHhcccccCCCce
Q 029362 144 KDELVLDGNDIELVSRSAALINQKCHVKNKDI 175 (194)
Q Consensus 144 k~~i~l~G~Dkq~Vgq~AA~Ir~~~~~Kgkd~ 175 (194)
+-+|.|+|-|...|-++|+.|....+.+|-.+
T Consensus 3 kirI~LkS~d~~~Ld~~~~~i~~~ak~~g~~v 34 (102)
T 3j20_L 3 KARIKIASTNVRSLDEVANQIKQIAERTGVRM 34 (102)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHSSSCEE
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHHHHhCCcc
Confidence 46899999999999999999999877655443
No 34
>3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination antitermination; 2.60A {Escherichia coli} PDB: 2kvq_E 3d3b_J* 3imq_J
Probab=32.76 E-value=35 Score=23.72 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=25.4
Q ss_pred CcEEEEEeCcHhHHHHHHHHHhcccccCCC
Q 029362 144 KDELVLDGNDIELVSRSAALINQKCHVKNK 173 (194)
Q Consensus 144 k~~i~l~G~Dkq~Vgq~AA~Ir~~~~~Kgk 173 (194)
+-+|.|+|-|...+-++|++|...-+.+|-
T Consensus 10 kirI~L~S~d~~~Ld~~~~~Iv~~ak~~g~ 39 (87)
T 3d3c_J 10 RIRIRLKAFDHRLIDQATAEIVETAKRTGA 39 (87)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHHHHhCC
Confidence 478999999999999999999987664443
No 35
>3r2c_J Protein NUSE, 30S ribosomal protein S10; cross species NUSB-NUSE-RNA interaction; HET: PEG; 1.90A {Aquifex aeolicus} PDB: 3r2d_J
Probab=29.14 E-value=53 Score=22.65 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=25.0
Q ss_pred CcEEEEEeCcHhHHHHHHHHHhcccccCCC
Q 029362 144 KDELVLDGNDIELVSRSAALINQKCHVKNK 173 (194)
Q Consensus 144 k~~i~l~G~Dkq~Vgq~AA~Ir~~~~~Kgk 173 (194)
+-+|.|++-|...|-++|++|-..-+-+|-
T Consensus 5 kiRI~L~S~d~~~Ld~~~~~Iv~~ak~~g~ 34 (83)
T 3r2c_J 5 KIRIKLRAYDHRLLDQSVKQIIETVKRTGG 34 (83)
T ss_dssp CEEEEEEESCHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHHHHhCC
Confidence 468999999999999999999887554443
No 36
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=28.31 E-value=21 Score=23.84 Aligned_cols=26 Identities=15% Similarity=0.481 Sum_probs=21.4
Q ss_pred CCcEEEEeCcEEEEEcCCcEEEEEec
Q 029362 14 DGVKVKINAKVIEVEGPRGKLSRDFK 39 (194)
Q Consensus 14 ~~V~v~i~~~~i~vkGp~G~l~~~~~ 39 (194)
.||++.++++.+.++.|+|.++-.+.
T Consensus 17 ~gi~l~~eg~kLr~~ap~g~l~~~l~ 42 (78)
T 2jug_A 17 LGVRLWVEGERLRFQAPPGVMTPELQ 42 (78)
T ss_dssp HTCEEEEETTEEEEECCTTTTCHHHH
T ss_pred cCCEEEEECCEeeeecCccccCHHHH
Confidence 47889999999999999998874433
No 37
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=27.05 E-value=32 Score=24.70 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=20.8
Q ss_pred CcHhHHHHHHHHHhcccccCCCceeeeec
Q 029362 152 NDIELVSRSAALINQKCHVKNKDIRKFLD 180 (194)
Q Consensus 152 ~Dkq~Vgq~AA~Ir~~~~~Kgkd~R~f~D 180 (194)
.|||.+=+.|.. ++.-.|||+-+|-+.|
T Consensus 73 ~~KErILkaar~-k~~vtykg~pirlsaD 100 (100)
T 2w7a_A 73 EMKEKMLRAARE-KGRVTLKGKPIRLTVD 100 (100)
T ss_dssp HHHHHHHHHHHH-HCCEEETTEEEEEEEC
T ss_pred ccHHHHHHHHHH-hCceeeCCcceeecCC
Confidence 468888875444 4445699999999887
No 38
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=26.27 E-value=33 Score=23.28 Aligned_cols=19 Identities=47% Similarity=0.765 Sum_probs=16.1
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 029362 13 PDGVKVKINAKVIEVEGPR 31 (194)
Q Consensus 13 P~~V~v~i~~~~i~vkGp~ 31 (194)
|++++|++.++.++|+|-.
T Consensus 19 ~edi~V~v~~~~L~I~g~~ 37 (90)
T 2y1y_A 19 PEELKVKVLGDVIEVHGKH 37 (90)
T ss_dssp GGGEEEEEETTEEEEEEEE
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 3678999999999999964
No 39
>3r8n_J 30S ribosomal protein S10; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_J 3fih_J* 3j18_J* 2wwl_J 3oar_J 3oaq_J 3ofb_J 3ofa_J 3ofp_J 3ofx_J 3ofy_J 3ofo_J 3r8o_J 4a2i_J 4gd1_J 4gd2_J 3i1m_J 1p6g_J 1p87_J* 1vs7_J* ...
Probab=24.59 E-value=35 Score=24.00 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=24.4
Q ss_pred cEEEEEeCcHhHHHHHHHHHhcccccCCC
Q 029362 145 DELVLDGNDIELVSRSAALINQKCHVKNK 173 (194)
Q Consensus 145 ~~i~l~G~Dkq~Vgq~AA~Ir~~~~~Kgk 173 (194)
-+|.|+|-|...|-++|+.|...++.+|-
T Consensus 2 irI~L~s~d~~~Ld~~~~~i~~~ak~~g~ 30 (98)
T 3r8n_J 2 IRIRLKAFDHRLIDQATAEIVETAKRTGA 30 (98)
T ss_dssp BCCEEEBSCHHHHHHHHHHHHHHHHHSSC
T ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHhCC
Confidence 35889999999999999999998775443
No 40
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=23.86 E-value=38 Score=23.55 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=16.5
Q ss_pred CCCcEEEEeCcEEEEEcCCc
Q 029362 13 PDGVKVKINAKVIEVEGPRG 32 (194)
Q Consensus 13 P~~V~v~i~~~~i~vkGp~G 32 (194)
|+.++|++.++.++|+|-+.
T Consensus 24 ~edI~V~v~~~~L~I~g~~~ 43 (101)
T 2wj5_A 24 PEEISVKVVGDHVEVHARHE 43 (101)
T ss_dssp GGGEEEEEETTEEEEEEEEE
T ss_pred HHHeEEEEECCEEEEEEEEe
Confidence 36789999999999998763
No 41
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=23.73 E-value=38 Score=23.80 Aligned_cols=19 Identities=26% Similarity=0.704 Sum_probs=16.4
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 029362 13 PDGVKVKINAKVIEVEGPR 31 (194)
Q Consensus 13 P~~V~v~i~~~~i~vkGp~ 31 (194)
|++++|+++++.|+|+|-.
T Consensus 25 ~edi~V~v~~~~L~I~g~~ 43 (106)
T 3l1e_A 25 PEDLTVKVQEDFVEIHGKH 43 (106)
T ss_dssp GGGEEEEEETTEEEEEEEE
T ss_pred hHHEEEEEECCEEEEEEEE
Confidence 4789999999999999953
No 42
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=23.18 E-value=1e+02 Score=20.45 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=17.2
Q ss_pred EEEEEeCcHhHHHHHHHHHhcc
Q 029362 146 ELVLDGNDIELVSRSAALINQK 167 (194)
Q Consensus 146 ~i~l~G~Dkq~Vgq~AA~Ir~~ 167 (194)
.+.|+| |.+.+-.....|+.+
T Consensus 62 ~v~I~G-~~~~v~~A~~~I~~i 82 (85)
T 2opv_A 62 PLRIIG-DPYKVQQACEMVMDI 82 (85)
T ss_dssp EEEEEE-CHHHHHHHHHHHHHH
T ss_pred EEEEEe-CHHHHHHHHHHHHHH
Confidence 399999 999998887777764
No 43
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=21.66 E-value=1.5e+02 Score=20.74 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=23.1
Q ss_pred CeEEEeCCCCCcEEEEEeCcHhHHHHHHHHHhcc
Q 029362 134 GVTVIRSDKVKDELVLDGNDIELVSRSAALINQK 167 (194)
Q Consensus 134 gv~v~~~~~~k~~i~l~G~Dkq~Vgq~AA~Ir~~ 167 (194)
++.+..|+. .+.|+|+|. ++.|....+.|+..
T Consensus 58 ~v~I~fp~~-~~~ItI~G~-~~~V~~a~~~I~~~ 89 (102)
T 2ctf_A 58 KVHIEFTEG-EDKITLEGP-TEDVSVAQEQIEGM 89 (102)
T ss_dssp SSEEEECSS-SCEEEEEEC-HHHHHHHHHHHHHH
T ss_pred CcEEEeCCC-CCEEEEECC-HHHHHHHHHHHHHH
Confidence 344444432 278999999 88899888888765
No 44
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=21.51 E-value=23 Score=24.42 Aligned_cols=19 Identities=32% Similarity=0.274 Sum_probs=16.4
Q ss_pred eCcHhHHHHHHHHHhcccc
Q 029362 151 GNDIELVSRSAALINQKCH 169 (194)
Q Consensus 151 G~Dkq~Vgq~AA~Ir~~~~ 169 (194)
+++...|++.||++.+||-
T Consensus 30 ~i~RikVSqaaadL~~yc~ 48 (77)
T 3v5w_G 30 NIDRIKVSKAAADLMAYCE 48 (77)
T ss_dssp SSCCCCHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHH
Confidence 4567789999999999987
No 45
>3u5c_U 40S ribosomal protein S20; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_J 3o30_N 3o2z_N 3u5g_U 1s1h_J 3jyv_J*
Probab=20.49 E-value=93 Score=22.86 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=26.7
Q ss_pred CcEEEEEeCcHhHHHHHHHHHhcccccCCCce
Q 029362 144 KDELVLDGNDIELVSRSAALINQKCHVKNKDI 175 (194)
Q Consensus 144 k~~i~l~G~Dkq~Vgq~AA~Ir~~~~~Kgkd~ 175 (194)
+-+|.|+|-|...|-++|+.|-...+.+|-.+
T Consensus 21 kIrI~LkS~d~~~Ld~~~~~I~~~ak~~g~~v 52 (121)
T 3u5c_U 21 KIRITLTSTKVKQLENVSSNIVKNAEQHNLVK 52 (121)
T ss_dssp CEEEEEEESCHHHHHHHHHHHHHHHHHTCCCE
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHHHHhCCee
Confidence 36899999999999999999998876555444
No 46
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=20.16 E-value=1.5e+02 Score=19.02 Aligned_cols=33 Identities=12% Similarity=0.130 Sum_probs=21.2
Q ss_pred CeEEEeCCCC--CcEEEEEeCcHhHHHHHHHHHhcc
Q 029362 134 GVTVIRSDKV--KDELVLDGNDIELVSRSAALINQK 167 (194)
Q Consensus 134 gv~v~~~~~~--k~~i~l~G~Dkq~Vgq~AA~Ir~~ 167 (194)
|+++.++++. ...+.|+|. .+.+-+..+.|+..
T Consensus 35 g~~I~i~~~g~~~~~V~I~G~-~~~v~~A~~~I~~i 69 (71)
T 1vig_A 35 KVSVRIPPDSEKSNLIRIEGD-PQGVQQAKRELLEL 69 (71)
T ss_dssp CCEEECCCCCSSSEEEEEEES-SHHHHHHHHHHHHT
T ss_pred CCEEEECCCCCcccEEEEEcC-HHHHHHHHHHHHHH
Confidence 4555555431 138999999 47777777777654
No 47
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=20.15 E-value=1e+02 Score=21.29 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=23.4
Q ss_pred CeEEEeCCCC--CcEEEEEeCcHhHHHHHHHHHhccc
Q 029362 134 GVTVIRSDKV--KDELVLDGNDIELVSRSAALINQKC 168 (194)
Q Consensus 134 gv~v~~~~~~--k~~i~l~G~Dkq~Vgq~AA~Ir~~~ 168 (194)
|+++.++.+. .+.+.|.|.+. .|-+.-+.|+.+.
T Consensus 48 gv~I~i~~~g~~~~~V~I~G~~~-~v~~A~~~I~~iv 83 (95)
T 2ctj_A 48 GVHIHFPVEGSGSDTVVIRGPSS-DVEKAKKQLLHLA 83 (95)
T ss_dssp SCEEECCCTTTTCCEEEEESCHH-HHHHHHHHHHHHH
T ss_pred CCEEEeCCCCCCcceEEEEcCHH-HHHHHHHHHHHHH
Confidence 4444444431 14899999988 8888888888764
Done!