RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 029362
(194 letters)
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 93
Score = 144 bits (365), Expect = 6e-46
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 91 YRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLD 150
+ Y M Y+HFP+ ++ + + I NFLGEK R+ + V +EL +
Sbjct: 1 WEYGMEVFYSHFPMQVNVEGDE--VVIENFLGEKAPRRTTIHGDTDVEID---GEELTVS 55
Query: 151 GNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 187
G DIE V ++AA I Q + +KD+R F DG+Y++ K
Sbjct: 56 GPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRK 92
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 87
Score = 83.8 bits (207), Expect = 3e-22
Identities = 41/90 (45%), Positives = 64/90 (71%), Gaps = 3/90 (3%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V + + + + V+GPRG L RDF H+N++ L+ ++ ++L++
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKK---KRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKG 90
D W+G+RK A +RT SHV N+I GVT G
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLG 87
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 78
Score = 60.6 bits (147), Expect = 2e-13
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 12 IPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSA 71
+P GV V V +V+GP+G+L+ ++ +L ++ ++K A
Sbjct: 7 VPSGVTVNAQDGVFKVKGPKGELTV-------PYNTELTVRQDGDQLLVERPSDAQKHRA 59
Query: 72 AIRTALSHVGNLITGVTKG 90
+ V N + GV+ G
Sbjct: 60 LHGLTRTLVANAVKGVSDG 78
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 79
Score = 60.7 bits (147), Expect = 2e-13
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 11 DIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTS 70
+IP+ V + + I VEG G ++R + ++D + I++ + KT
Sbjct: 6 EIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDV------SVDGDTVVIESDEDNAKTM 59
Query: 71 AAIRTALSHVGNLITGVTKG 90
+ I T SH+ N+ GVT+G
Sbjct: 60 STIGTFQSHIENMFHGVTEG 79
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus
thermophilus [TaxId: 274]}
Length = 71
Score = 59.8 bits (145), Expect = 3e-13
Identities = 14/78 (17%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 13 PDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAA 72
P GV V++ ++V+GP+G+L + ++++ R+ +
Sbjct: 1 PKGVSVEVAPGRVKVKGPKGELEVPVSPEMRV-------VVEEGVVRVERPSDERRHKSL 53
Query: 73 IRTALSHVGNLITGVTKG 90
+ + N + GV++G
Sbjct: 54 HGLTRTLIANAVKGVSEG 71
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli
[TaxId: 562]}
Length = 81
Score = 58.6 bits (142), Expect = 1e-12
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 12 IPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSA 71
+P GV VKIN +VI ++G G+L+R + + + L G A
Sbjct: 10 VPAGVDVKINGQVITIKGKNGELTR-------TLNDAVEVKHADNTLTFGPRDGYADGWA 62
Query: 72 AIRTALSHVGNLITGVTKG 90
TA + + +++ GVT+G
Sbjct: 63 QAGTARALLNSMVIGVTEG 81
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 75
Score = 58.3 bits (141), Expect = 2e-12
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 12 IPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSA 71
IP GV V +N + V+GP+G+L+R F +T E + + + A
Sbjct: 4 IPAGVTVTVNGNTVTVKGPKGELTRTFHP----DMTITVEG---NVITVTRPSDEKHHRA 56
Query: 72 AIRTALSHVGNLITGVTKG 90
T S + N++ GV+KG
Sbjct: 57 LHGTTRSLLANMVEGVSKG 75
>g1tii.1 d.166.1.1 (A:,C:) Heat-labile toxin, A-chain {Escherichia
coli, type IIB [TaxId: 562]}
Length = 223
Score = 29.5 bits (66), Expect = 0.21
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Query: 41 LNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYA 100
+N++ + D + T+ +R A N++ G + Y Y +
Sbjct: 35 ININLYDHARGTATGNTRYNDGYVS---TTTTLRQAHLLGQNMLGGYNEYYIYVVAAAPN 91
Query: 101 HFPINASIGNNNKA 114
F +N +G +
Sbjct: 92 LFDVNGVLGRYSPY 105
>d1s5da_ d.166.1.1 (A:) Cholera toxin {Vibrio cholerae [TaxId: 666]}
Length = 235
Score = 28.8 bits (64), Expect = 0.33
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 69 TSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIG 109
TS ++R+A +++G + Y Y + F +N +G
Sbjct: 62 TSISLRSAHLVGQTILSGHSTYYIYVIATAPNMFNVNDVLG 102
>d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 359
Score = 27.9 bits (61), Expect = 0.87
Identities = 10/82 (12%), Positives = 21/82 (25%), Gaps = 12/82 (14%)
Query: 22 AKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVG 81
A V+ ++ P + +R + D S + ++
Sbjct: 30 ADVVRIDRPSSVDGISRDAML----------RNRRIVTAD--LKSDQGLELALKLIAKAD 77
Query: 82 NLITGVTKGYRYKMRFVYAHFP 103
LI G G ++
Sbjct: 78 VLIEGYRPGVTERLGLGPEECA 99
>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase
RumA, catalytic domain {Escherichia coli [TaxId: 562]}
Length = 358
Score = 25.8 bits (55), Expect = 3.8
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 71 AAIRTALSH-VGNLITGVTKGYRYKMRFVYAHFP 103
AA+ + H V +I V GYR + R + P
Sbjct: 32 AALARLMKHDVSEVIADVPWGYRRRARLSLNYLP 65
>d1j6ra_ d.173.1.2 (A:) Hypothetical protein TM0269 {Thermotoga
maritima [TaxId: 2336]}
Length = 197
Score = 24.8 bits (54), Expect = 7.7
Identities = 13/100 (13%), Positives = 34/100 (34%), Gaps = 14/100 (14%)
Query: 96 RFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVD--MLDGVTV-IRSDKVKDELVLDGN 152
++ F ++ S+ ++ + + L K + + T+ + D+ +E G
Sbjct: 54 VVLWRDFEVDGSLSFDD--MRLTGELATKHLSGSKIITVFLATLGKKVDEKIEEYFRKGE 111
Query: 153 DIE------LVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
D+ + S +K ++R + S
Sbjct: 112 DLLAFFIDGIASEMVEYALRKVD---AELRMKRSNLEGSF 148
>d2nn6f2 d.101.1.1 (F:176-270) Exosome complex exonuclease MTR3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 23.8 bits (51), Expect = 9.0
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 130 DMLDGVTVIRSDKVKDELVLDGNDIELVSRSAAL 163
D++ G + + +LD +E +A L
Sbjct: 3 DLVVGCGLSLAPGPAPTWLLDPTRLEEERAAAGL 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.379
Gapped
Lambda K H
0.267 0.0595 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 703,086
Number of extensions: 31680
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 20
Length of query: 194
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 113
Effective length of database: 1,295,466
Effective search space: 146387658
Effective search space used: 146387658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)