Your job contains 1 sequence.
>029363
MATPQMLSSLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETM
KIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG
KVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA
AGGGLFPMPDPKTN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 029363
(194 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2144173 - symbol:AT5G06660 "AT5G06660" species... 703 2.4e-69 1
TAIR|locus:2088634 - symbol:AT3G12030 "AT3G12030" species... 699 6.3e-69 1
UNIPROTKB|Q3T0N3 - symbol:TMCO1 "Transmembrane and coiled... 401 2.4e-37 1
UNIPROTKB|E2RGT2 - symbol:TMCO1 "Uncharacterized protein"... 401 2.4e-37 1
UNIPROTKB|J9JIE6 - symbol:TMCO1 "Transmembrane and coiled... 401 2.4e-37 1
UNIPROTKB|Q9UM00 - symbol:TMCO1 "Transmembrane and coiled... 401 2.4e-37 1
UNIPROTKB|C5HGF3 - symbol:TMCO1 "Transmembrane and coiled... 401 2.4e-37 1
MGI|MGI:1921173 - symbol:Tmco1 "transmembrane and coiled-... 401 2.4e-37 1
RGD|1359178 - symbol:Tmco1 "transmembrane and coiled-coil... 401 2.4e-37 1
UNIPROTKB|E1C8A8 - symbol:TMCO1 "Uncharacterized protein"... 393 1.7e-36 1
ZFIN|ZDB-GENE-050417-344 - symbol:tmco1 "transmembrane an... 393 1.7e-36 1
FB|FBgn0032746 - symbol:CG10470 species:7227 "Drosophila ... 386 9.2e-36 1
WB|WBGene00009045 - symbol:F22B5.10 species:6239 "Caenorh... 381 3.1e-35 1
DICTYBASE|DDB_G0281489 - symbol:DDB_G0281489 "transmembra... 300 1.2e-26 1
UNIPROTKB|J3KS45 - symbol:TMCO1 "Transmembrane and coiled... 290 1.4e-25 1
UNIPROTKB|J3QQY2 - symbol:TMCO1 "Transmembrane and coiled... 233 1.5e-19 1
UNIPROTKB|J3KTQ7 - symbol:TMCO1 "Transmembrane and coiled... 152 5.8e-11 1
UNIPROTKB|J3QRB3 - symbol:TMCO1 "Transmembrane and coiled... 140 1.1e-09 1
>TAIR|locus:2144173 [details] [associations]
symbol:AT5G06660 "AT5G06660" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0016020 "membrane" evidence=IEA]
InterPro:IPR002809 InterPro:IPR008559 Pfam:PF01956
PIRSF:PIRSF023322 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0016020 EMBL:AP002543 OMA:LSLVKMK PANTHER:PTHR20917
EMBL:AY039847 EMBL:AY060536 IPI:IPI00517086 RefSeq:NP_196284.1
UniGene:At.25423 PRIDE:Q9FG04 EnsemblPlants:AT5G06660.1
GeneID:830554 KEGG:ath:AT5G06660 TAIR:At5g06660 InParanoid:Q9FG04
PhylomeDB:Q9FG04 ProtClustDB:CLSN2686887 Genevestigator:Q9FG04
Uniprot:Q9FG04
Length = 196
Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
Identities = 141/196 (71%), Positives = 155/196 (79%)
Query: 1 MATP-QMLSSLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLET 59
MAT + +S KY+DSLTVVGISFCTA++CE+ISW+LIYRT+SYK+LKSSIDKASKKLET
Sbjct: 1 MATAIPLFASFKYADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKSSIDKASKKLET 60
Query: 60 MKIENPAXXXXXXXXXXXX-DRVETSLKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLF 118
MK +NP+ DRVE+SLKESSRDLSLFKFKS NSLF
Sbjct: 61 MKTDNPSSKLTNKKSKTKKIDRVESSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF 120
Query: 119 EGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRG 178
EGKVVAKLPF P IV KMSHRGL+GDD+TDCSMAFLY LCSISIRTNLQKFLGFSPPRG
Sbjct: 121 EGKVVAKLPFHPITIVRKMSHRGLKGDDSTDCSMAFLYLLCSISIRTNLQKFLGFSPPRG 180
Query: 179 AAAGGGLFPMPDPKTN 194
AA GGLFPMPDPKTN
Sbjct: 181 AAGAGGLFPMPDPKTN 196
>TAIR|locus:2088634 [details] [associations]
symbol:AT3G12030 "AT3G12030" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0016020 "membrane" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IDA] InterPro:IPR002809
InterPro:IPR008559 Pfam:PF01956 PIRSF:PIRSF023322 GO:GO:0005794
EMBL:CP002686 GO:GO:0016020 EMBL:AP002040 EMBL:AC069473
PANTHER:PTHR20917 ProtClustDB:CLSN2686887 EMBL:BT005514
EMBL:AK118289 IPI:IPI00522182 RefSeq:NP_566409.1 UniGene:At.64995
PRIDE:Q9LHL8 EnsemblPlants:AT3G12030.1 GeneID:820377
KEGG:ath:AT3G12030 TAIR:At3g12030 InParanoid:Q9LHL8 OMA:PTDCSMA
PhylomeDB:Q9LHL8 ArrayExpress:Q9LHL8 Genevestigator:Q9LHL8
Uniprot:Q9LHL8
Length = 196
Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
Identities = 141/196 (71%), Positives = 153/196 (78%)
Query: 1 MATP-QMLSSLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLET 59
MAT + +S KY+DSLTVVGISFCTA++CE+ISW+LIYRT+SYK+LK SIDKA+KKLET
Sbjct: 1 MATTIPLFASFKYADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKYSIDKATKKLET 60
Query: 60 MKIENPAXXXXXXXXXXXX-DRVETSLKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLF 118
MK ENP+ DRVETSLKESSRDLSLFKFKS NSLF
Sbjct: 61 MKTENPSSKLSIKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF 120
Query: 119 EGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRG 178
EGKVVAKLPF P IV KMSHRGL+GDD TDCSMAFLY LCSISIRTNLQKFLGFSPPRG
Sbjct: 121 EGKVVAKLPFHPITIVKKMSHRGLKGDDPTDCSMAFLYLLCSISIRTNLQKFLGFSPPRG 180
Query: 179 AAAGGGLFPMPDPKTN 194
AA GGLFPMPDPKTN
Sbjct: 181 AAGAGGLFPMPDPKTN 196
>UNIPROTKB|Q3T0N3 [details] [associations]
symbol:TMCO1 "Transmembrane and coiled-coil
domain-containing protein 1" species:9913 "Bos taurus" [GO:0005789
"endoplasmic reticulum membrane" evidence=IEA] [GO:0000139 "Golgi
membrane" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] InterPro:IPR002809 InterPro:IPR008559 Pfam:PF01956
PIRSF:PIRSF023322 GO:GO:0016021 GO:GO:0000139 GO:GO:0005789
EMBL:BC102321 IPI:IPI00695865 RefSeq:NP_001029938.1
UniGene:Bt.10047 ProteinModelPortal:Q3T0N3 PRIDE:Q3T0N3
Ensembl:ENSBTAT00000013200 GeneID:614715 KEGG:bta:614715 CTD:54499
eggNOG:NOG301636 GeneTree:ENSGT00390000002659 HOGENOM:HOG000240371
HOVERGEN:HBG054437 InParanoid:Q3T0N3 OMA:LSLVKMK OrthoDB:EOG4R5040
NextBio:20899245 PANTHER:PTHR20917 Uniprot:Q3T0N3
Length = 188
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 82/183 (44%), Positives = 109/183 (59%)
Query: 9 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXX 68
S ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE K
Sbjct: 2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITE 59
Query: 69 XXXXXXXXXXDRVETSLKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPF 128
+R E LK ++RDLS+ + KS NS+F+G+VVAKLPF
Sbjct: 60 SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 119
Query: 129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA--AGGGLF 186
P + +SHR L GDD TDCS FLY LC++SIR N+QK LG +P R A AGG L
Sbjct: 120 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 179
Query: 187 PMP 189
P P
Sbjct: 180 PPP 182
>UNIPROTKB|E2RGT2 [details] [associations]
symbol:TMCO1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016020 "membrane" evidence=IEA]
InterPro:IPR002809 InterPro:IPR008559 Pfam:PF01956
PIRSF:PIRSF023322 GO:GO:0016020 CTD:54499
GeneTree:ENSGT00390000002659 OMA:LSLVKMK PANTHER:PTHR20917
EMBL:AAEX03018384 RefSeq:XP_549626.2 ProteinModelPortal:E2RGT2
Ensembl:ENSCAFT00000021367 GeneID:478992 KEGG:cfa:478992
Uniprot:E2RGT2
Length = 188
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 82/183 (44%), Positives = 109/183 (59%)
Query: 9 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXX 68
S ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE K
Sbjct: 2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITE 59
Query: 69 XXXXXXXXXXDRVETSLKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPF 128
+R E LK ++RDLS+ + KS NS+F+G+VVAKLPF
Sbjct: 60 SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 119
Query: 129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA--AGGGLF 186
P + +SHR L GDD TDCS FLY LC++SIR N+QK LG +P R A AGG L
Sbjct: 120 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 179
Query: 187 PMP 189
P P
Sbjct: 180 PPP 182
>UNIPROTKB|J9JIE6 [details] [associations]
symbol:TMCO1 "Transmembrane and coiled-coil
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0016021 "integral to membrane" evidence=IEA] InterPro:IPR002809
InterPro:IPR008559 Pfam:PF01956 PIRSF:PIRSF023322 GO:GO:0016021
EMBL:CH471067 EMBL:AL451074 CTD:54499 PANTHER:PTHR20917
RefSeq:NP_061899.2 GeneID:54499 KEGG:hsa:54499 HGNC:HGNC:18188
Ensembl:ENST00000367881 Uniprot:J9JIE6
Length = 239
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 82/183 (44%), Positives = 109/183 (59%)
Query: 9 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXX 68
S ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE K
Sbjct: 53 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITE 110
Query: 69 XXXXXXXXXXDRVETSLKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPF 128
+R E LK ++RDLS+ + KS NS+F+G+VVAKLPF
Sbjct: 111 SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 170
Query: 129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA--AGGGLF 186
P + +SHR L GDD TDCS FLY LC++SIR N+QK LG +P R A AGG L
Sbjct: 171 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 230
Query: 187 PMP 189
P P
Sbjct: 231 PPP 233
>UNIPROTKB|Q9UM00 [details] [associations]
symbol:TMCO1 "Transmembrane and coiled-coil
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0000139 "Golgi
membrane" evidence=IEA] [GO:0005789 "endoplasmic reticulum
membrane" evidence=IEA] InterPro:IPR002809 InterPro:IPR008559
Pfam:PF01956 PIRSF:PIRSF023322 GO:GO:0016021 GO:GO:0000139
GO:GO:0005789 EMBL:AL451074 CTD:54499 eggNOG:NOG301636
HOGENOM:HOG000240371 HOVERGEN:HBG054437 OMA:LSLVKMK
OrthoDB:EOG4R5040 PANTHER:PTHR20917 EMBL:AB020980 EMBL:AY763589
EMBL:AF070626 EMBL:AF274935 EMBL:AF277194 EMBL:AY359027
EMBL:AK316610 EMBL:BC000104 IPI:IPI00026111 IPI:IPI00761107
RefSeq:NP_061899.2 UniGene:Hs.31498 ProteinModelPortal:Q9UM00
IntAct:Q9UM00 STRING:Q9UM00 PhosphoSite:Q9UM00 DMDM:74753399
PaxDb:Q9UM00 PRIDE:Q9UM00 DNASU:54499 Ensembl:ENST00000392129
GeneID:54499 KEGG:hsa:54499 UCSC:uc001gdj.4 GeneCards:GC01M165693
HGNC:HGNC:18188 HPA:HPA038775 MIM:614123 MIM:614132
neXtProt:NX_Q9UM00 Orphanet:228407 PharmGKB:PA142670792
InParanoid:Q9UM00 PhylomeDB:Q9UM00 GenomeRNAi:54499 NextBio:56846
ArrayExpress:Q9UM00 Bgee:Q9UM00 CleanEx:HS_TMCO1
Genevestigator:Q9UM00 GermOnline:ENSG00000143183 Uniprot:Q9UM00
Length = 188
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 82/183 (44%), Positives = 109/183 (59%)
Query: 9 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXX 68
S ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE K
Sbjct: 2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITE 59
Query: 69 XXXXXXXXXXDRVETSLKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPF 128
+R E LK ++RDLS+ + KS NS+F+G+VVAKLPF
Sbjct: 60 SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 119
Query: 129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA--AGGGLF 186
P + +SHR L GDD TDCS FLY LC++SIR N+QK LG +P R A AGG L
Sbjct: 120 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 179
Query: 187 PMP 189
P P
Sbjct: 180 PPP 182
>UNIPROTKB|C5HGF3 [details] [associations]
symbol:TMCO1 "Transmembrane and coiled-coil domains protein
1" species:9823 "Sus scrofa" [GO:0005789 "endoplasmic reticulum
membrane" evidence=IEA] [GO:0000139 "Golgi membrane" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] InterPro:IPR002809
InterPro:IPR008559 Pfam:PF01956 PIRSF:PIRSF023322 GO:GO:0016021
GO:GO:0000139 GO:GO:0005789 CTD:54499 eggNOG:NOG301636
GeneTree:ENSGT00390000002659 OMA:LSLVKMK PANTHER:PTHR20917
EMBL:CU468388 EMBL:CU468989 EMBL:FJ440337 RefSeq:NP_001161057.1
UniGene:Ssc.21991 ProteinModelPortal:C5HGF3 PRIDE:C5HGF3
Ensembl:ENSSSCT00000006931 GeneID:100151809 KEGG:ssc:100151809
Uniprot:C5HGF3
Length = 188
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 82/183 (44%), Positives = 109/183 (59%)
Query: 9 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXX 68
S ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE K
Sbjct: 2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITE 59
Query: 69 XXXXXXXXXXDRVETSLKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPF 128
+R E LK ++RDLS+ + KS NS+F+G+VVAKLPF
Sbjct: 60 SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 119
Query: 129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA--AGGGLF 186
P + +SHR L GDD TDCS FLY LC++SIR N+QK LG +P R A AGG L
Sbjct: 120 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 179
Query: 187 PMP 189
P P
Sbjct: 180 PPP 182
>MGI|MGI:1921173 [details] [associations]
symbol:Tmco1 "transmembrane and coiled-coil domains 1"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
InterPro:IPR002809 InterPro:IPR008559 Pfam:PF01956
PIRSF:PIRSF023322 MGI:MGI:1921173 GO:GO:0016021 GO:GO:0000139
GO:GO:0005789 CTD:54499 eggNOG:NOG301636
GeneTree:ENSGT00390000002659 HOGENOM:HOG000240371
HOVERGEN:HBG054437 OMA:LSLVKMK OrthoDB:EOG4R5040 PANTHER:PTHR20917
EMBL:AK037709 EMBL:AK162344 EMBL:BC011457 EMBL:BC019761
EMBL:BC020098 IPI:IPI00121974 RefSeq:NP_001034572.1
UniGene:Mm.330045 ProteinModelPortal:Q921L3 STRING:Q921L3
PhosphoSite:Q921L3 PaxDb:Q921L3 PRIDE:Q921L3
Ensembl:ENSMUST00000097473 GeneID:68944 KEGG:mmu:68944
UCSC:uc007dkv.1 InParanoid:Q921L3 NextBio:328245 Bgee:Q921L3
CleanEx:MM_TMCO1 Genevestigator:Q921L3
GermOnline:ENSMUSG00000052428 Uniprot:Q921L3
Length = 188
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 82/183 (44%), Positives = 109/183 (59%)
Query: 9 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXX 68
S ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE K
Sbjct: 2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITE 59
Query: 69 XXXXXXXXXXDRVETSLKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPF 128
+R E LK ++RDLS+ + KS NS+F+G+VVAKLPF
Sbjct: 60 SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 119
Query: 129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA--AGGGLF 186
P + +SHR L GDD TDCS FLY LC++SIR N+QK LG +P R A AGG L
Sbjct: 120 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 179
Query: 187 PMP 189
P P
Sbjct: 180 PPP 182
>RGD|1359178 [details] [associations]
symbol:Tmco1 "transmembrane and coiled-coil domains 1"
species:10116 "Rattus norvegicus" [GO:0000139 "Golgi membrane"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005789
"endoplasmic reticulum membrane" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
InterPro:IPR002809 InterPro:IPR008559 Pfam:PF01956
PIRSF:PIRSF023322 RGD:1359178 GO:GO:0016021 GO:GO:0000139
GO:GO:0005789 CTD:54499 eggNOG:NOG301636
GeneTree:ENSGT00390000002659 HOGENOM:HOG000240371
HOVERGEN:HBG054437 OMA:LSLVKMK PANTHER:PTHR20917 EMBL:BC088319
EMBL:AF531432 IPI:IPI00203757 RefSeq:NP_001009631.1
RefSeq:XP_003751315.1 UniGene:Rn.89308 ProteinModelPortal:Q5I0H4
STRING:Q5I0H4 PRIDE:Q5I0H4 Ensembl:ENSRNOT00000005277 GeneID:289196
KEGG:rno:289196 UCSC:RGD:1359178 NextBio:629368 ArrayExpress:Q5I0H4
Genevestigator:Q5I0H4 GermOnline:ENSRNOG00000003928 Uniprot:Q5I0H4
Length = 188
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 82/183 (44%), Positives = 109/183 (59%)
Query: 9 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXX 68
S ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE K
Sbjct: 2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITE 59
Query: 69 XXXXXXXXXXDRVETSLKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPF 128
+R E LK ++RDLS+ + KS NS+F+G+VVAKLPF
Sbjct: 60 SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 119
Query: 129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA--AGGGLF 186
P + +SHR L GDD TDCS FLY LC++SIR N+QK LG +P R A AGG L
Sbjct: 120 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 179
Query: 187 PMP 189
P P
Sbjct: 180 PPP 182
>UNIPROTKB|E1C8A8 [details] [associations]
symbol:TMCO1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0016020 "membrane" evidence=IEA] InterPro:IPR002809
InterPro:IPR008559 Pfam:PF01956 PIRSF:PIRSF023322 GO:GO:0016020
CTD:54499 GeneTree:ENSGT00390000002659 OMA:LSLVKMK
PANTHER:PTHR20917 EMBL:AADN02034084 EMBL:AADN02034085
EMBL:AADN02034086 EMBL:AADN02034087 EMBL:AADN02034088
EMBL:AADN02034089 IPI:IPI00601745 RefSeq:XP_424693.2
UniGene:Gga.49624 Ensembl:ENSGALT00000004284 GeneID:427100
KEGG:gga:427100 NextBio:20828421 Uniprot:E1C8A8
Length = 188
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 81/183 (44%), Positives = 109/183 (59%)
Query: 9 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXX 68
S ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE K
Sbjct: 2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITE 59
Query: 69 XXXXXXXXXXDRVETSLKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPF 128
+R E LK ++RDLS+ + KS NS+F+G+VVAKLPF
Sbjct: 60 SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 119
Query: 129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA--AGGGLF 186
P + +SHR L G+D TDCS FLY LC++SIR N+QK LG +P R A AGG L
Sbjct: 120 IPLSYIQGLSHRNLLGEDYTDCSFIFLYILCTMSIRQNIQKMLGLAPSRAATKQAGGFLG 179
Query: 187 PMP 189
P P
Sbjct: 180 PPP 182
>ZFIN|ZDB-GENE-050417-344 [details] [associations]
symbol:tmco1 "transmembrane and coiled-coil domains
1" species:7955 "Danio rerio" [GO:0016020 "membrane" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0016021 "integral to
membrane" evidence=IEA] InterPro:IPR002809 InterPro:IPR008559
Pfam:PF01956 PIRSF:PIRSF023322 ZFIN:ZDB-GENE-050417-344
GO:GO:0016021 EMBL:BX927144 CTD:54499 GeneTree:ENSGT00390000002659
HOVERGEN:HBG054437 OMA:LSLVKMK PANTHER:PTHR20917 EMBL:BC076218
EMBL:BC152265 IPI:IPI00501754 RefSeq:NP_001002575.1
UniGene:Dr.13739 Ensembl:ENSDART00000100276 GeneID:378980
KEGG:dre:378980 InParanoid:Q6DGW9 NextBio:20813916 Uniprot:Q6DGW9
Length = 188
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 80/183 (43%), Positives = 109/183 (59%)
Query: 9 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXX 68
S ++D++ +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE K
Sbjct: 2 STMFADTILIVFISICTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITE 59
Query: 69 XXXXXXXXXXDRVETSLKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPF 128
+R E LK ++RDLS+ + KS NS+F+G+VVAKLPF
Sbjct: 60 SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 119
Query: 129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA--AGGGLF 186
P + +SHR L G+D TDCS FLY LC++SIR N+QK LG +P R A AGG L
Sbjct: 120 VPLSYIQGLSHRNLLGEDYTDCSFIFLYILCTMSIRQNIQKMLGLAPSRAATKQAGGFLG 179
Query: 187 PMP 189
P P
Sbjct: 180 PPP 182
>FB|FBgn0032746 [details] [associations]
symbol:CG10470 species:7227 "Drosophila melanogaster"
[GO:0016020 "membrane" evidence=IEA] InterPro:IPR002809
InterPro:IPR008559 Pfam:PF01956 PIRSF:PIRSF023322 EMBL:AE014134
GO:GO:0016020 GeneTree:ENSGT00390000002659 OMA:LSLVKMK
PANTHER:PTHR20917 FlyBase:FBgn0032746 EMBL:BT023490
RefSeq:NP_609936.1 UniGene:Dm.6502 IntAct:Q9VJ11 MINT:MINT-831635
STRING:Q9VJ11 EnsemblMetazoa:FBtr0081146 GeneID:35174
KEGG:dme:Dmel_CG10470 UCSC:CG10470-RA InParanoid:Q9VJ11
GenomeRNAi:35174 NextBio:792223 Uniprot:Q9VJ11
Length = 183
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 79/180 (43%), Positives = 109/180 (60%)
Query: 12 YSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXXXXX 71
+SD++ +V IS CTA + E ++W+++YRT Y+ LK+ ++K SKKLE K +
Sbjct: 2 WSDTILIVFISVCTAFLGEGLTWVMVYRTEKYQKLKTEVEKQSKKLERRKEIH--GDSLD 59
Query: 72 XXXXXXXDRVETSLKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPFKPF 131
+R E LK ++RDLSL K K+ NS+F+G+VVA+LPF P
Sbjct: 60 KAVKKKIERDEEKLKNNNRDLSLVKMKTMFATGFAFTALLSMFNSIFDGRVVAQLPFTPI 119
Query: 132 GIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAAAGG-GLF-PMP 189
+ +SHR L GDD TDCS FLY LC++SIR N+QK LGF+P R A+ G GLF P P
Sbjct: 120 SWIQGLSHRNLSGDDYTDCSFIFLYILCTMSIRQNIQKLLGFAPSRAASKQGVGLFGPAP 179
>WB|WBGene00009045 [details] [associations]
symbol:F22B5.10 species:6239 "Caenorhabditis elegans"
[GO:0016020 "membrane" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0071688 "striated muscle myosin thick
filament assembly" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0055120 "striated muscle dense body"
evidence=IDA] InterPro:IPR002809 InterPro:IPR008559 Pfam:PF01956
PIRSF:PIRSF023322 GO:GO:0016020 GO:GO:0071688 EMBL:Z50044
eggNOG:NOG301636 GeneTree:ENSGT00390000002659 HOGENOM:HOG000240371
OMA:LSLVKMK PANTHER:PTHR20917 PIR:T21243 RefSeq:NP_495786.1
STRING:Q19714 PaxDb:Q19714 EnsemblMetazoa:F22B5.10.1
EnsemblMetazoa:F22B5.10.2 GeneID:174352 KEGG:cel:CELE_F22B5.10
UCSC:F22B5.10 CTD:174352 WormBase:F22B5.10 InParanoid:Q19714
NextBio:883672 Uniprot:Q19714
Length = 186
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 76/167 (45%), Positives = 102/167 (61%)
Query: 14 DSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXXXXXXX 73
D L ++ I+F TA+ E I+WLL+YR++ YK LK+ +DK +KKLE K E
Sbjct: 4 DCLLIIAIAFGTALAGEGITWLLVYRSDHYKRLKADMDKKTKKLEKKKQE--VGDTNDKN 61
Query: 74 XXXXXDRVETSLKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPFKPFGI 133
+R E LK ++RD+S+FK KS NS+FEG+VVAKLPF P G
Sbjct: 62 IKRKLEREEERLKATNRDMSMFKMKSMFAIGLAFTALLSTFNSIFEGRVVAKLPFYPIGF 121
Query: 134 VMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA 180
+ +SHR L G+D TDCS FLY LC++++R NLQK LGF+P R A
Sbjct: 122 IQGLSHRNLIGEDMTDCSFIFLYILCTMTVRQNLQKILGFAPSRAMA 168
>DICTYBASE|DDB_G0281489 [details] [associations]
symbol:DDB_G0281489 "transmembrane and coiled-coil
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0016020 "membrane" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR002809 InterPro:IPR008559 Pfam:PF01956
PIRSF:PIRSF023322 dictyBase:DDB_G0281489 GO:GO:0016021
GenomeReviews:CM000152_GR EMBL:AAFI02000041 eggNOG:NOG301636
OMA:LSLVKMK PANTHER:PTHR20917 RefSeq:XP_640713.1 STRING:Q54TU8
EnsemblProtists:DDB0205621 GeneID:8623100 KEGG:ddi:DDB_G0281489
ProtClustDB:CLSZ2430552 Uniprot:Q54TU8
Length = 186
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 62/180 (34%), Positives = 98/180 (54%)
Query: 16 LTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETM--KIENPAXXXXXXX 73
L ++ +S +++ E +SWLL+YRT +YK K++ID+ +L+ + + +
Sbjct: 7 LFILFVSIASSLASEGVSWLLVYRTENYKRGKANIDRLQIQLDKLVDQESETSSLSKKGN 66
Query: 74 XXXXXDRVETSLKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPFKPFGI 133
+++E LK ++++LS K KS N +F+G VV KLPF P G
Sbjct: 67 KDKKIEKIEEQLKIANKELSFSKMKSMFAVAISMIALFSYLNRIFDGVVVCKLPFVPIGF 126
Query: 134 VMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAAAGGGLFPMPDPKT 193
+ +SHR + GDD TDCSM F+Y +CS+ IR N+Q LG +PP+ A P + KT
Sbjct: 127 LQGISHRTIAGDDYTDCSMTFIYAICSMFIRNNIQLILGTAPPKTKQANPWALP-EEKKT 185
>UNIPROTKB|J3KS45 [details] [associations]
symbol:TMCO1 "Transmembrane and coiled-coil
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0016020 "membrane" evidence=IEA] InterPro:IPR002809
InterPro:IPR008559 Pfam:PF01956 GO:GO:0016020 EMBL:AL451074
PANTHER:PTHR20917 HGNC:HGNC:18188 Ensembl:ENST00000481278
Uniprot:J3KS45
Length = 143
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 58/137 (42%), Positives = 78/137 (56%)
Query: 28 ICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXXXXXXXXXXXXDRVETSLKE 87
+ I+W+L+YRT+ YK LK+ ++K SKKLE K +R E LK
Sbjct: 9 LVSGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITESAGRQQKKKIERQEEKLKN 66
Query: 88 SSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDA 147
++RDLS+ + KS NS+F+G+VVAKLPF P + +SHR L GDD
Sbjct: 67 NNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLSYIQGLSHRNLLGDDT 126
Query: 148 TDCSMAFLYFLCSISIR 164
TDCS FLY LC++SIR
Sbjct: 127 TDCSFIFLYILCTMSIR 143
>UNIPROTKB|J3QQY2 [details] [associations]
symbol:TMCO1 "Transmembrane and coiled-coil
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0016021 "integral to membrane" evidence=IEA] InterPro:IPR002809
InterPro:IPR008559 Pfam:PF01956 GO:GO:0016021 EMBL:CH471067
EMBL:AL451074 PANTHER:PTHR20917 UniGene:Hs.31498 HGNC:HGNC:18188
Ensembl:ENST00000464650 Ensembl:ENST00000580248 Uniprot:J3QQY2
Length = 104
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 45/77 (58%), Positives = 54/77 (70%)
Query: 115 NSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFS 174
NS+F+G+VVAKLPF P + +SHR L GDD TDCS FLY LC++SIR N+QK LG +
Sbjct: 22 NSIFDGRVVAKLPFTPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLA 81
Query: 175 PPRGAA--AGGGLFPMP 189
P R A AGG L P P
Sbjct: 82 PSRAATKQAGGFLGPPP 98
>UNIPROTKB|J3KTQ7 [details] [associations]
symbol:TMCO1 "Transmembrane and coiled-coil
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0016021 "integral to membrane" evidence=IEA] InterPro:IPR002809
InterPro:IPR008559 Pfam:PF01956 GO:GO:0016021 EMBL:CH471067
EMBL:AL451074 PANTHER:PTHR20917 UniGene:Hs.31498 HGNC:HGNC:18188
Ensembl:ENST00000465705 Uniprot:J3KTQ7
Length = 152
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 27/53 (50%), Positives = 40/53 (75%)
Query: 9 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMK 61
S ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE K
Sbjct: 53 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK 105
>UNIPROTKB|J3QRB3 [details] [associations]
symbol:TMCO1 "Transmembrane and coiled-coil
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0016020 "membrane" evidence=IEA] InterPro:IPR002809
InterPro:IPR008559 Pfam:PF01956 GO:GO:0016020 EMBL:AL451074
PANTHER:PTHR20917 HGNC:HGNC:18188 Ensembl:ENST00000476143
Uniprot:J3QRB3
Length = 95
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 24/48 (50%), Positives = 37/48 (77%)
Query: 9 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKK 56
S ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKK
Sbjct: 48 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKK 95
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.133 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 194 167 0.00075 108 3 11 22 0.37 32
30 0.46 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 577 (61 KB)
Total size of DFA: 137 KB (2085 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.50u 0.12s 12.62t Elapsed: 00:00:01
Total cpu time: 12.50u 0.12s 12.62t Elapsed: 00:00:01
Start: Fri May 10 17:11:23 2013 End: Fri May 10 17:11:24 2013