BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029363
(194 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5I0H4|TMCO1_RAT Transmembrane and coiled-coil domains protein 1 OS=Rattus
norvegicus GN=Tmco1 PE=2 SV=1
Length = 188
Score = 160 bits (406), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 85/183 (46%), Positives = 117/183 (63%), Gaps = 2/183 (1%)
Query: 9 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKI 68
S ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE K
Sbjct: 2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITE-- 59
Query: 69 STKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPF 128
S + + KKI+R E LK ++RDLS+ + KS + + G+ NS+F+G+VVAKLPF
Sbjct: 60 SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 119
Query: 129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAAAGGGLFPM 188
P + +SHR L GDD TDCS FLY LC++SIR N+QK LG +P R A G F
Sbjct: 120 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 179
Query: 189 PDP 191
P P
Sbjct: 180 PPP 182
>sp|Q5R9B0|TMCO1_PONAB Transmembrane and coiled-coil domain-containing protein 1 OS=Pongo
abelii GN=TMCO1 PE=2 SV=1
Length = 188
Score = 160 bits (406), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 85/183 (46%), Positives = 117/183 (63%), Gaps = 2/183 (1%)
Query: 9 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKI 68
S ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE K
Sbjct: 2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITE-- 59
Query: 69 STKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPF 128
S + + KKI+R E LK ++RDLS+ + KS + + G+ NS+F+G+VVAKLPF
Sbjct: 60 SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 119
Query: 129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAAAGGGLFPM 188
P + +SHR L GDD TDCS FLY LC++SIR N+QK LG +P R A G F
Sbjct: 120 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 179
Query: 189 PDP 191
P P
Sbjct: 180 PPP 182
>sp|C5HGF3|TMCO1_PIG Transmembrane and coiled-coil domains protein 1 OS=Sus scrofa
GN=TMCO1 PE=2 SV=1
Length = 188
Score = 160 bits (406), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 85/183 (46%), Positives = 117/183 (63%), Gaps = 2/183 (1%)
Query: 9 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKI 68
S ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE K
Sbjct: 2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITE-- 59
Query: 69 STKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPF 128
S + + KKI+R E LK ++RDLS+ + KS + + G+ NS+F+G+VVAKLPF
Sbjct: 60 SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 119
Query: 129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAAAGGGLFPM 188
P + +SHR L GDD TDCS FLY LC++SIR N+QK LG +P R A G F
Sbjct: 120 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 179
Query: 189 PDP 191
P P
Sbjct: 180 PPP 182
>sp|Q921L3|TMCO1_MOUSE Transmembrane and coiled-coil domain-containing protein 1 OS=Mus
musculus GN=Tmco1 PE=2 SV=1
Length = 188
Score = 160 bits (406), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 85/183 (46%), Positives = 117/183 (63%), Gaps = 2/183 (1%)
Query: 9 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKI 68
S ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE K
Sbjct: 2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITE-- 59
Query: 69 STKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPF 128
S + + KKI+R E LK ++RDLS+ + KS + + G+ NS+F+G+VVAKLPF
Sbjct: 60 SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 119
Query: 129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAAAGGGLFPM 188
P + +SHR L GDD TDCS FLY LC++SIR N+QK LG +P R A G F
Sbjct: 120 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 179
Query: 189 PDP 191
P P
Sbjct: 180 PPP 182
>sp|Q9UM00|TMCO1_HUMAN Transmembrane and coiled-coil domain-containing protein 1 OS=Homo
sapiens GN=TMCO1 PE=1 SV=1
Length = 188
Score = 160 bits (406), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 85/183 (46%), Positives = 117/183 (63%), Gaps = 2/183 (1%)
Query: 9 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKI 68
S ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE K
Sbjct: 2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITE-- 59
Query: 69 STKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPF 128
S + + KKI+R E LK ++RDLS+ + KS + + G+ NS+F+G+VVAKLPF
Sbjct: 60 SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 119
Query: 129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAAAGGGLFPM 188
P + +SHR L GDD TDCS FLY LC++SIR N+QK LG +P R A G F
Sbjct: 120 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 179
Query: 189 PDP 191
P P
Sbjct: 180 PPP 182
>sp|Q3T0N3|TMCO1_BOVIN Transmembrane and coiled-coil domain-containing protein 1 OS=Bos
taurus GN=TMCO1 PE=2 SV=1
Length = 188
Score = 160 bits (406), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 85/183 (46%), Positives = 117/183 (63%), Gaps = 2/183 (1%)
Query: 9 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKI 68
S ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE K
Sbjct: 2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITE-- 59
Query: 69 STKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPF 128
S + + KKI+R E LK ++RDLS+ + KS + + G+ NS+F+G+VVAKLPF
Sbjct: 60 SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 119
Query: 129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAAAGGGLFPM 188
P + +SHR L GDD TDCS FLY LC++SIR N+QK LG +P R A G F
Sbjct: 120 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 179
Query: 189 PDP 191
P P
Sbjct: 180 PPP 182
>sp|Q54TU8|TMCO1_DICDI Transmembrane and coiled-coil domain-containing protein 1 homolog
OS=Dictyostelium discoideum GN=tmco1 PE=2 SV=1
Length = 186
Score = 143 bits (360), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 14 DSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETM--KIENPAKISTK 71
+ L ++ +S +++ E +SWLL+YRT +YK K++ID+ +L+ + + + +S K
Sbjct: 5 EVLFILFVSIASSLASEGVSWLLVYRTENYKRGKANIDRLQIQLDKLVDQESETSSLSKK 64
Query: 72 KSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPF 131
+K KKI+++E LK ++++LS K KS VA+ + +F LN +F+G VV KLPF P
Sbjct: 65 GNKDKKIEKIEEQLKIANKELSFSKMKSMFAVAISMIALFSYLNRIFDGVVVCKLPFVPI 124
Query: 132 GIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAAAGGGLFP 187
G + +SHR + GDD TDCSM F+Y +CS+ IR N+Q LG +PP+ A P
Sbjct: 125 GFLQGISHRTIAGDDYTDCSMTFIYAICSMFIRNNIQLILGTAPPKTKQANPWALP 180
>sp|Q2EEX5|YCF78_HELSJ Uncharacterized membrane protein ycf78 OS=Helicosporidium sp.
subsp. Simulium jonesii GN=ycf78 PE=3 SV=1
Length = 1168
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 29 CESISWLLIY-RTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKE 87
E+IS+L Y NSY+ ++ +D SK L+ IEN K+KT KI + T +E
Sbjct: 684 TEAISYLRHYFNNNSYRKIRDDLDNFSKVLKINFIEN------TKNKTNKIKNLNT--RE 735
Query: 88 SSRDL 92
S+ L
Sbjct: 736 DSKKL 740
>sp|Q7SXW4|EMC3_DANRE ER membrane protein complex subunit 3 OS=Danio rerio GN=emc3 PE=2
SV=1
Length = 261
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 26/193 (13%)
Query: 1 MATPQML--SSLKYSDSLTVVGISFCTAIICESISWLL----------------IYRTNS 42
MA P++L S+++ L +V I+F +I +S LL + R+
Sbjct: 1 MAEPELLLDSNIRLWVVLPIVFITFLVGVIRHYVSILLQSDKKLTLEQVSDSQVLIRSRV 60
Query: 43 YKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAV 102
+ I K S + N KK+K K + + + + S + K V
Sbjct: 61 LRENGKYIPKQSFLMRKFYFNNQEDGFFKKTKRKVVP--PSPMTDPSMLTDMMKGNVTNV 118
Query: 103 VALVLFVVFGLLNSLFEGKVVAKLPFKPFGIVMK-MSHRGLQ--GDDATDCSMAFLYFLC 159
+ ++L + G +N F G V K+PF P + K M +G++ DA+ S A YFL
Sbjct: 119 LPMIL--IGGWINWTFSGFVTTKVPF-PLTLRFKPMLQQGIELLSLDASWVSSASWYFLN 175
Query: 160 SISIRTNLQKFLG 172
+R+ LG
Sbjct: 176 VFGLRSMYSLILG 188
>sp|Q815I3|UVRB_BACCR UvrABC system protein B OS=Bacillus cereus (strain ATCC 14579 / DSM
31) GN=uvrB PE=3 SV=1
Length = 658
Score = 31.2 bits (69), Expect = 4.4, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 53 ASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSL 94
A++++ET + PAK TKK + K I ++E +KE+++ L
Sbjct: 601 AAEEIETYE-ATPAKKMTKKEREKTIAKMEAEMKEAAKALDF 641
>sp|P08799|MYS2_DICDI Myosin-2 heavy chain OS=Dictyostelium discoideum GN=mhcA PE=1 SV=3
Length = 2116
Score = 31.2 bits (69), Expect = 4.7, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 43 YKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDL 92
Y + SS DK+ ++L+T++ +N +T + ++DR E S K++ DL
Sbjct: 1355 YADVVSSRDKSVEQLKTLQAKNEELRNTAEEAEGQLDRAERSKKKAEFDL 1404
>sp|Q3ZCB8|EMC3_BOVIN ER membrane protein complex subunit 3 OS=Bos taurus GN=EMC3 PE=2
SV=3
Length = 261
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 76/193 (39%), Gaps = 26/193 (13%)
Query: 1 MATPQML--SSLKYSDSLTVVGISFCTAIICESISWLL----------------IYRTNS 42
MA P++L S+++ L +V I+F +I +S LL + R+
Sbjct: 1 MAGPELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRV 60
Query: 43 YKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAV 102
+ I K S NP KK+K K + + D+ K
Sbjct: 61 LRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVVPPSPVTDPTMLTDM----MKGNVT 116
Query: 103 VALVLFVVFGLLNSLFEGKVVAKLPFKPFGIVMK-MSHRGLQ--GDDATDCSMAFLYFLC 159
L + ++ G +N F G V K+PF P + K M +G++ DA+ S A YFL
Sbjct: 117 NVLPMILIGGWINMTFSGFVTTKVPF-PLTLRFKPMLQQGIELLTLDASWVSSASWYFLN 175
Query: 160 SISIRTNLQKFLG 172
+R+ LG
Sbjct: 176 VFGLRSIYSLILG 188
>sp|Q5U2V8|EMC3_RAT ER membrane protein complex subunit 3 OS=Rattus norvegicus GN=Emc3
PE=2 SV=3
Length = 261
Score = 30.4 bits (67), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 76/193 (39%), Gaps = 26/193 (13%)
Query: 1 MATPQML--SSLKYSDSLTVVGISFCTAIICESISWLL----------------IYRTNS 42
MA P++L S+++ L +V I+F +I +S LL + R+
Sbjct: 1 MAGPELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRV 60
Query: 43 YKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAV 102
+ I K S NP KK+K K + + D+ K
Sbjct: 61 LRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVVPPSPMTDPTMLTDM----MKGNVT 116
Query: 103 VALVLFVVFGLLNSLFEGKVVAKLPFKPFGIVMK-MSHRGLQ--GDDATDCSMAFLYFLC 159
L + ++ G +N F G V K+PF P + K M +G++ DA+ S A YFL
Sbjct: 117 NVLPMILIGGWINMTFSGFVTTKVPF-PLTLRFKPMLQQGIELLTLDASWVSSASWYFLN 175
Query: 160 SISIRTNLQKFLG 172
+R+ LG
Sbjct: 176 VFGLRSIYSLILG 188
>sp|Q99KI3|EMC3_MOUSE ER membrane protein complex subunit 3 OS=Mus musculus GN=Emc3 PE=2
SV=3
Length = 261
Score = 30.4 bits (67), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 76/193 (39%), Gaps = 26/193 (13%)
Query: 1 MATPQML--SSLKYSDSLTVVGISFCTAIICESISWLL----------------IYRTNS 42
MA P++L S+++ L +V I+F +I +S LL + R+
Sbjct: 1 MAGPELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRV 60
Query: 43 YKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAV 102
+ I K S NP KK+K K + + D+ K
Sbjct: 61 LRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVVPPSPMTDPTMLTDM----MKGNVT 116
Query: 103 VALVLFVVFGLLNSLFEGKVVAKLPFKPFGIVMK-MSHRGLQ--GDDATDCSMAFLYFLC 159
L + ++ G +N F G V K+PF P + K M +G++ DA+ S A YFL
Sbjct: 117 NVLPMILIGGWINMTFSGFVTTKVPF-PLTLRFKPMLQQGIELLTLDASWVSSASWYFLN 175
Query: 160 SISIRTNLQKFLG 172
+R+ LG
Sbjct: 176 VFGLRSIYSLILG 188
>sp|Q5R7C1|EMC3_PONAB ER membrane protein complex subunit 3 OS=Pongo abelii GN=EMC3 PE=2
SV=3
Length = 261
Score = 30.4 bits (67), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 76/193 (39%), Gaps = 26/193 (13%)
Query: 1 MATPQML--SSLKYSDSLTVVGISFCTAIICESISWLL----------------IYRTNS 42
MA P++L S+++ L +V I+F +I +S LL + R+
Sbjct: 1 MAGPELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRV 60
Query: 43 YKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAV 102
+ I K S NP KK+K K + + D+ K
Sbjct: 61 LRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVVPPSPMTDPTMLTDM----MKGNVT 116
Query: 103 VALVLFVVFGLLNSLFEGKVVAKLPFKPFGIVMK-MSHRGLQ--GDDATDCSMAFLYFLC 159
L + ++ G +N F G V K+PF P + K M +G++ DA+ S A YFL
Sbjct: 117 NVLPMILIGGWINMTFSGFVTTKVPF-PLTLRFKPMLQQGIELLTLDASWVSSASWYFLN 175
Query: 160 SISIRTNLQKFLG 172
+R+ LG
Sbjct: 176 VFGLRSIYSLILG 188
>sp|Q9P0I2|EMC3_HUMAN ER membrane protein complex subunit 3 OS=Homo sapiens GN=EMC3 PE=1
SV=3
Length = 261
Score = 30.4 bits (67), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 76/193 (39%), Gaps = 26/193 (13%)
Query: 1 MATPQML--SSLKYSDSLTVVGISFCTAIICESISWLL----------------IYRTNS 42
MA P++L S+++ L +V I+F +I +S LL + R+
Sbjct: 1 MAGPELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRV 60
Query: 43 YKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAV 102
+ I K S NP KK+K K + + D+ K
Sbjct: 61 LRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVVPPSPMTDPTMLTDM----MKGNVT 116
Query: 103 VALVLFVVFGLLNSLFEGKVVAKLPFKPFGIVMK-MSHRGLQ--GDDATDCSMAFLYFLC 159
L + ++ G +N F G V K+PF P + K M +G++ DA+ S A YFL
Sbjct: 117 NVLPMILIGGWINMTFSGFVTTKVPF-PLTLRFKPMLQQGIELLTLDASWVSSASWYFLN 175
Query: 160 SISIRTNLQKFLG 172
+R+ LG
Sbjct: 176 VFGLRSIYSLILG 188
>sp|P15144|AMPN_HUMAN Aminopeptidase N OS=Homo sapiens GN=ANPEP PE=1 SV=4
Length = 967
Score = 30.4 bits (67), Expect = 8.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 6 MLSSLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENP 65
M S SL ++GI A +C I+ ++Y K SS AS NP
Sbjct: 1 MAKGFYISKSLGILGILLGVAAVCTIIALSVVYSQEKNKNANSS-PVASTTPSASATTNP 59
Query: 66 AKIST-KKSKTKKIDRVETSLKESSRDLSL 94
A +T +SK R+ +LK S ++L
Sbjct: 60 ASATTLDQSKAWNRYRLPNTLKPDSYRVTL 89
>sp|P39880|CUX1_HUMAN Homeobox protein cut-like 1 OS=Homo sapiens GN=CUX1 PE=1 SV=3
Length = 1505
Score = 30.0 bits (66), Expect = 9.5, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 30/53 (56%)
Query: 40 TNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDL 92
T S + +KS +++A ++L+ K PA+ S+ D + + L+++ R++
Sbjct: 665 TGSDEAIKSILEQAKRELQVQKTAEPAQPSSASGSGNSDDAIRSILQQARREM 717
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,724,236
Number of Sequences: 539616
Number of extensions: 2274067
Number of successful extensions: 7472
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 7443
Number of HSP's gapped (non-prelim): 43
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)