Query 029363
Match_columns 194
No_of_seqs 111 out of 133
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 11:43:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029363.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029363hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3312 Predicted membrane pro 100.0 1.1E-67 2.4E-72 422.0 13.2 181 9-191 2-182 (186)
2 PF01956 DUF106: Integral memb 100.0 2.3E-39 5.1E-44 262.8 16.1 154 14-175 15-168 (168)
3 COG1422 Predicted membrane pro 100.0 1.1E-31 2.3E-36 223.5 17.6 154 13-176 45-200 (201)
4 KOG3188 Uncharacterized conser 98.9 2.7E-08 5.7E-13 84.3 11.1 84 92-175 107-192 (246)
5 PF04420 CHD5: CHD5-like prote 98.3 1.8E-06 4E-11 70.2 6.5 113 44-160 36-160 (161)
6 PRK02201 putative inner membra 97.1 0.012 2.6E-07 53.9 12.7 68 39-117 158-228 (357)
7 COG1422 Predicted membrane pro 96.2 0.074 1.6E-06 45.1 10.4 82 23-111 51-132 (201)
8 PRK01622 OxaA-like protein pre 96.1 0.052 1.1E-06 47.3 9.7 65 47-116 90-158 (256)
9 PRK00247 putative inner membra 95.4 0.36 7.7E-06 45.3 12.7 40 78-117 84-126 (429)
10 TIGR03592 yidC_oxa1_cterm memb 95.3 1.3 2.9E-05 36.3 14.9 38 79-116 50-90 (181)
11 PRK01318 membrane protein inse 95.2 0.61 1.3E-05 44.7 14.0 108 45-174 347-458 (521)
12 PF02096 60KD_IMP: 60Kd inner 94.5 2.2 4.8E-05 35.0 14.6 63 45-117 27-92 (198)
13 PRK00145 putative inner membra 94.5 1.6 3.6E-05 37.1 13.4 63 45-117 55-120 (223)
14 PF01956 DUF106: Integral memb 94.3 0.96 2.1E-05 36.5 11.1 76 80-158 77-154 (168)
15 PRK02944 OxaA-like protein pre 94.1 0.5 1.1E-05 41.2 9.7 66 45-116 83-151 (255)
16 PRK02463 OxaA-like protein pre 93.2 0.7 1.5E-05 41.5 9.3 65 40-116 90-159 (307)
17 PRK01315 putative inner membra 93.2 6.4 0.00014 35.8 15.5 64 45-118 66-132 (329)
18 PF04210 MtrG: Tetrahydrometha 93.2 0.72 1.6E-05 32.9 7.4 62 38-118 9-70 (70)
19 PRK11546 zraP zinc resistance 92.2 1.3 2.9E-05 35.7 8.6 79 15-96 8-109 (143)
20 PRK00888 ftsB cell division pr 91.2 1.6 3.4E-05 33.2 7.8 32 31-62 14-48 (105)
21 COG0706 YidC Preprotein transl 91.1 1.5 3.2E-05 39.2 8.8 39 79-117 159-200 (314)
22 PRK03449 putative inner membra 91.0 3.1 6.8E-05 37.3 10.7 63 45-117 56-121 (304)
23 KOG4253 Tryptophan-rich basic 90.8 1.1 2.4E-05 36.9 6.9 86 73-164 74-168 (175)
24 PRK01026 tetrahydromethanopter 90.8 2.1 4.6E-05 31.1 7.6 62 38-118 12-73 (77)
25 PF06305 DUF1049: Protein of u 90.7 0.93 2E-05 30.9 5.6 21 42-62 42-62 (68)
26 PRK01001 putative inner membra 90.6 1.9 4.1E-05 43.4 9.5 61 47-117 602-665 (795)
27 PF05992 SbmA_BacA: SbmA/BacA- 90.0 13 0.00028 33.8 13.7 128 14-177 58-188 (315)
28 COG3883 Uncharacterized protei 89.7 0.78 1.7E-05 40.6 5.5 85 22-106 19-116 (265)
29 PRK02654 putative inner membra 89.5 2.7 5.8E-05 38.7 8.9 33 80-113 80-115 (375)
30 PF10779 XhlA: Haemolysin XhlA 88.9 4.8 0.0001 28.2 8.2 21 42-62 7-27 (71)
31 PF14282 FlxA: FlxA-like prote 88.7 1.7 3.8E-05 32.9 6.2 54 40-96 18-71 (106)
32 PF00558 Vpu: Vpu protein; In 88.6 0.66 1.4E-05 34.1 3.6 51 18-69 7-57 (81)
33 TIGR01149 mtrG N5-methyltetrah 87.7 4.9 0.00011 28.7 7.4 59 39-116 10-68 (70)
34 KOG4403 Cell surface glycoprot 87.4 2.5 5.3E-05 40.1 7.4 74 14-95 216-328 (575)
35 PF06305 DUF1049: Protein of u 87.1 3.4 7.4E-05 28.0 6.4 22 39-60 46-67 (68)
36 PF10805 DUF2730: Protein of u 86.0 6.1 0.00013 29.9 7.8 66 24-95 19-84 (106)
37 PRK11020 hypothetical protein; 85.6 3.3 7.2E-05 32.3 6.2 47 41-96 5-51 (118)
38 PF06476 DUF1090: Protein of u 85.5 2.6 5.6E-05 32.7 5.6 45 39-92 68-112 (115)
39 PRK06342 transcription elongat 85.2 2.8 6E-05 34.2 6.0 53 39-96 32-84 (160)
40 PF10779 XhlA: Haemolysin XhlA 84.7 7.8 0.00017 27.1 7.4 46 44-96 2-47 (71)
41 PF04420 CHD5: CHD5-like prote 80.9 2.7 5.8E-05 34.1 4.3 68 39-106 38-112 (161)
42 PF05529 Bap31: B-cell recepto 80.6 13 0.00028 30.5 8.3 24 73-96 158-181 (192)
43 PF00957 Synaptobrevin: Synapt 80.4 13 0.00027 26.7 7.3 26 88-113 57-82 (89)
44 PF08514 STAG: STAG domain ; 80.3 6.9 0.00015 30.2 6.2 38 43-87 81-118 (118)
45 PF11853 DUF3373: Protein of u 79.7 3.4 7.4E-05 39.5 5.1 21 42-63 26-46 (489)
46 PRK11677 hypothetical protein; 77.8 17 0.00038 28.9 7.9 73 19-94 6-79 (134)
47 COG4064 MtrG Tetrahydromethano 77.4 23 0.00051 25.4 7.6 61 38-117 12-72 (75)
48 PRK14474 F0F1 ATP synthase sub 77.2 17 0.00038 31.4 8.5 28 12-40 2-29 (250)
49 PRK13461 F0F1 ATP synthase sub 77.1 22 0.00048 28.2 8.5 48 13-62 3-50 (159)
50 PRK09609 hypothetical protein; 75.3 59 0.0013 29.5 11.4 38 24-62 96-133 (312)
51 PF06295 DUF1043: Protein of u 74.8 22 0.00049 27.7 7.8 50 43-95 27-76 (128)
52 TIGR02209 ftsL_broad cell divi 74.3 27 0.00058 24.6 7.5 21 42-62 25-45 (85)
53 PF04977 DivIC: Septum formati 74.1 11 0.00023 26.0 5.3 22 41-62 17-38 (80)
54 KOG0981 DNA topoisomerase I [R 73.4 5.7 0.00012 39.0 4.8 54 41-94 636-701 (759)
55 PRK13455 F0F1 ATP synthase sub 73.2 25 0.00053 28.7 8.0 20 9-28 24-43 (184)
56 TIGR02209 ftsL_broad cell divi 71.1 29 0.00063 24.4 7.1 23 41-63 31-53 (85)
57 PF03449 GreA_GreB_N: Transcri 70.9 25 0.00054 25.0 6.6 55 39-94 7-71 (74)
58 PRK00888 ftsB cell division pr 70.8 33 0.00071 26.0 7.6 45 16-62 4-55 (105)
59 PRK07353 F0F1 ATP synthase sub 70.4 35 0.00076 26.3 8.0 33 27-61 17-49 (140)
60 PF10732 DUF2524: Protein of u 70.4 19 0.00041 26.6 5.9 49 38-92 34-82 (84)
61 PF03962 Mnd1: Mnd1 family; I 70.3 14 0.0003 30.8 5.9 22 73-94 107-128 (188)
62 PF15061 DUF4538: Domain of un 70.2 6.3 0.00014 27.2 3.2 37 10-48 5-41 (58)
63 PF03268 DUF267: Caenorhabditi 70.1 80 0.0017 29.2 11.2 43 14-63 156-198 (353)
64 PF04977 DivIC: Septum formati 69.9 20 0.00043 24.6 5.9 23 40-62 23-45 (80)
65 KOG2391 Vacuolar sorting prote 69.5 24 0.00053 32.5 7.7 63 24-96 211-273 (365)
66 PF10883 DUF2681: Protein of u 69.3 17 0.00038 26.9 5.6 38 21-62 7-44 (87)
67 PRK01885 greB transcription el 68.3 16 0.00034 29.6 5.7 57 39-96 8-74 (157)
68 PF04156 IncA: IncA protein; 67.5 38 0.00083 27.4 7.9 24 16-39 41-64 (191)
69 PF10805 DUF2730: Protein of u 67.2 31 0.00068 26.0 6.8 55 24-96 15-71 (106)
70 PF07074 TRAP-gamma: Transloco 66.9 68 0.0015 26.7 9.2 17 12-28 44-60 (170)
71 TIGR03321 alt_F1F0_F0_B altern 66.6 43 0.00094 28.7 8.4 26 13-39 3-28 (246)
72 PF04999 FtsL: Cell division p 66.3 41 0.00089 24.4 7.2 18 45-62 39-56 (97)
73 PRK02654 putative inner membra 65.7 51 0.0011 30.6 9.0 23 97-119 92-114 (375)
74 PRK09174 F0F1 ATP synthase sub 65.6 47 0.001 28.0 8.3 14 23-36 61-74 (204)
75 PRK02201 putative inner membra 64.5 90 0.0019 28.8 10.4 19 44-62 156-174 (357)
76 PRK13453 F0F1 ATP synthase sub 64.3 60 0.0013 26.3 8.5 41 18-60 21-61 (173)
77 PRK14471 F0F1 ATP synthase sub 63.7 58 0.0013 25.9 8.2 38 23-62 16-53 (164)
78 CHL00118 atpG ATP synthase CF0 63.5 53 0.0012 26.1 7.9 29 30-60 37-65 (156)
79 PRK14473 F0F1 ATP synthase sub 63.5 61 0.0013 25.8 8.3 34 24-59 17-50 (164)
80 PF15188 CCDC-167: Coiled-coil 62.6 61 0.0013 24.0 8.2 15 97-111 67-81 (85)
81 COG0711 AtpF F0F1-type ATP syn 62.5 69 0.0015 25.8 8.4 43 18-62 9-51 (161)
82 PF11460 DUF3007: Protein of u 62.4 19 0.00041 27.7 4.7 10 76-85 93-102 (104)
83 TIGR01462 greA transcription e 62.4 26 0.00057 27.8 5.9 57 39-96 3-69 (151)
84 KOG3088 Secretory carrier memb 61.8 32 0.0007 31.0 6.8 15 138-152 183-197 (313)
85 PF14584 DUF4446: Protein of u 61.4 72 0.0016 25.8 8.3 7 42-48 24-30 (151)
86 PF05529 Bap31: B-cell recepto 61.2 62 0.0014 26.4 8.1 17 75-91 167-183 (192)
87 PRK06568 F0F1 ATP synthase sub 61.0 60 0.0013 26.4 7.8 46 13-62 4-49 (154)
88 PRK13454 F0F1 ATP synthase sub 61.0 69 0.0015 26.3 8.3 18 21-39 37-54 (181)
89 PF02096 60KD_IMP: 60Kd inner 60.7 52 0.0011 26.8 7.6 15 97-111 66-82 (198)
90 PRK13729 conjugal transfer pil 60.1 15 0.00033 35.1 4.7 54 39-92 67-120 (475)
91 COG4920 Predicted membrane pro 60.1 48 0.001 28.8 7.3 27 28-54 41-67 (249)
92 PRK05759 F0F1 ATP synthase sub 58.7 84 0.0018 24.5 8.2 32 26-59 15-46 (156)
93 COG5374 Uncharacterized conser 58.6 17 0.00038 30.6 4.3 59 26-89 122-180 (192)
94 PRK13460 F0F1 ATP synthase sub 58.4 88 0.0019 25.2 8.5 35 26-62 27-61 (173)
95 PRK14472 F0F1 ATP synthase sub 58.4 82 0.0018 25.4 8.3 14 23-36 26-39 (175)
96 TIGR03142 cytochro_ccmI cytoch 58.2 80 0.0017 24.0 9.9 24 98-121 93-116 (117)
97 PRK05892 nucleoside diphosphat 58.1 39 0.00084 27.4 6.2 58 39-96 9-74 (158)
98 PRK11637 AmiB activator; Provi 58.1 28 0.0006 32.1 6.1 16 43-58 49-64 (428)
99 PF04678 DUF607: Protein of un 57.7 1E+02 0.0023 25.2 11.1 58 75-137 73-131 (180)
100 PRK07352 F0F1 ATP synthase sub 57.3 88 0.0019 25.2 8.3 29 31-61 35-63 (174)
101 PF13858 DUF4199: Protein of u 57.1 91 0.002 24.3 10.9 34 17-50 69-104 (163)
102 PRK06569 F0F1 ATP synthase sub 56.7 86 0.0019 25.6 8.0 7 30-36 25-31 (155)
103 PRK13922 rod shape-determining 56.4 80 0.0017 27.2 8.4 43 41-94 69-111 (276)
104 PLN02943 aminoacyl-tRNA ligase 55.0 24 0.00053 36.3 5.6 52 42-94 890-949 (958)
105 PF10234 Cluap1: Clusterin-ass 54.5 34 0.00073 30.4 5.7 20 43-62 199-218 (267)
106 TIGR01461 greB transcription e 53.7 33 0.00072 27.7 5.2 57 39-96 6-72 (156)
107 PF12072 DUF3552: Domain of un 52.9 1E+02 0.0022 25.6 8.2 17 20-36 4-20 (201)
108 PHA01750 hypothetical protein 52.4 84 0.0018 22.4 7.3 40 46-92 32-72 (75)
109 PF09753 Use1: Membrane fusion 51.7 64 0.0014 27.7 6.9 6 113-118 242-247 (251)
110 CHL00019 atpF ATP synthase CF0 51.5 1.1E+02 0.0024 24.8 8.1 30 31-62 40-69 (184)
111 PRK00226 greA transcription el 51.2 59 0.0013 25.9 6.2 57 39-96 8-74 (157)
112 TIGR01710 typeII_sec_gspG gene 51.1 85 0.0018 24.3 7.0 42 19-62 13-54 (134)
113 PF02388 FemAB: FemAB family; 50.9 31 0.00067 31.8 5.1 54 39-96 239-293 (406)
114 PRK05729 valS valyl-tRNA synth 49.6 37 0.0008 34.5 5.8 50 42-92 812-869 (874)
115 PF10458 Val_tRNA-synt_C: Valy 49.6 61 0.0013 22.1 5.3 49 44-93 7-63 (66)
116 PTZ00419 valyl-tRNA synthetase 49.5 33 0.00071 35.4 5.5 52 43-95 931-990 (995)
117 PF07798 DUF1640: Protein of u 49.5 1.4E+02 0.0031 24.2 9.3 37 26-62 58-94 (177)
118 PF08656 DASH_Dad3: DASH compl 49.4 1E+02 0.0022 22.5 6.6 54 41-105 10-65 (78)
119 KOG0432 Valyl-tRNA synthetase 49.3 29 0.00063 35.8 4.9 54 41-95 930-991 (995)
120 PRK15396 murein lipoprotein; P 49.2 80 0.0017 22.9 6.0 22 41-62 25-46 (78)
121 PRK06231 F0F1 ATP synthase sub 49.0 1.4E+02 0.003 25.1 8.4 35 26-62 59-93 (205)
122 PF04483 DUF565: Protein of un 48.6 21 0.00046 24.5 2.8 22 20-42 8-29 (60)
123 PRK08476 F0F1 ATP synthase sub 48.5 1.3E+02 0.0028 23.5 8.4 40 18-59 10-49 (141)
124 PRK04654 sec-independent trans 48.3 93 0.002 26.8 7.2 17 9-25 3-19 (214)
125 PF04120 Iron_permease: Low af 47.3 1.4E+02 0.0031 23.7 8.0 66 22-91 46-113 (132)
126 COG3404 Methenyl tetrahydrofol 47.3 1.5E+02 0.0032 25.5 8.2 44 18-63 29-72 (208)
127 PF12732 YtxH: YtxH-like prote 47.2 94 0.002 21.5 6.2 39 23-62 5-47 (74)
128 PHA02047 phage lambda Rz1-like 47.0 1.3E+02 0.0028 23.0 7.6 21 42-62 35-55 (101)
129 KOG0569 Permease of the major 47.0 93 0.002 29.8 7.8 45 17-62 185-230 (485)
130 PF14182 YgaB: YgaB-like prote 46.8 58 0.0013 23.8 4.9 46 41-95 14-59 (79)
131 PF08229 SHR3_chaperone: ER me 46.2 59 0.0013 27.6 5.7 26 23-50 143-168 (196)
132 PRK02463 OxaA-like protein pre 45.9 70 0.0015 28.8 6.5 56 45-112 88-151 (307)
133 PF12794 MscS_TM: Mechanosensi 45.7 1.4E+02 0.003 27.0 8.4 39 77-117 289-327 (340)
134 PF11712 Vma12: Endoplasmic re 45.4 1.1E+02 0.0024 24.0 6.9 20 76-95 63-82 (142)
135 TIGR02894 DNA_bind_RsfA transc 45.2 1.5E+02 0.0033 24.4 7.8 6 82-87 124-129 (161)
136 PRK08475 F0F1 ATP synthase sub 45.0 1.6E+02 0.0036 23.7 8.0 11 26-36 33-43 (167)
137 PF05781 MRVI1: MRVI1 protein; 44.9 57 0.0012 31.7 6.0 50 76-127 457-510 (538)
138 COG4499 Predicted membrane pro 44.1 38 0.00082 31.9 4.5 26 39-64 367-392 (434)
139 PF11853 DUF3373: Protein of u 43.6 35 0.00076 32.8 4.3 21 42-62 32-52 (489)
140 PF14362 DUF4407: Domain of un 43.3 1.5E+02 0.0032 25.8 8.1 29 19-48 87-116 (301)
141 PF06273 eIF-4B: Plant specifi 43.3 46 0.00099 32.0 5.0 54 40-93 365-420 (492)
142 PF04568 IATP: Mitochondrial A 43.2 73 0.0016 24.2 5.2 12 74-85 88-99 (100)
143 PF12732 YtxH: YtxH-like prote 43.1 1.1E+02 0.0024 21.2 6.1 17 43-59 35-51 (74)
144 PRK12705 hypothetical protein; 42.7 1.1E+02 0.0023 29.7 7.5 22 18-40 8-29 (508)
145 PF03904 DUF334: Domain of unk 42.0 1.2E+02 0.0026 26.4 7.0 18 98-115 151-168 (230)
146 PF06133 DUF964: Protein of un 41.9 80 0.0017 23.0 5.3 40 45-87 37-76 (108)
147 PF12644 DUF3782: Protein of u 41.3 1.1E+02 0.0023 20.4 7.2 60 41-106 1-60 (64)
148 PRK12705 hypothetical protein; 41.2 1.4E+02 0.003 28.9 8.0 20 17-36 10-29 (508)
149 PF08285 DPM3: Dolichol-phosph 41.2 1.1E+02 0.0023 22.8 5.8 18 41-58 68-85 (91)
150 PRK06330 transcript cleavage f 41.1 64 0.0014 32.5 5.9 57 39-96 570-636 (718)
151 KOG3088 Secretory carrier memb 41.1 43 0.00092 30.3 4.2 12 76-87 81-92 (313)
152 PF11559 ADIP: Afadin- and alp 41.1 54 0.0012 25.7 4.5 24 73-96 98-121 (151)
153 KOG0432 Valyl-tRNA synthetase 41.1 66 0.0014 33.3 6.0 16 47-62 929-944 (995)
154 PF06810 Phage_GP20: Phage min 40.5 1.8E+02 0.0039 23.4 7.5 53 41-97 27-83 (155)
155 PF00430 ATP-synt_B: ATP synth 40.4 83 0.0018 23.5 5.3 6 31-36 15-20 (132)
156 COG3105 Uncharacterized protei 40.3 1.1E+02 0.0024 24.6 6.0 45 19-63 11-56 (138)
157 PF00957 Synaptobrevin: Synapt 40.3 1.2E+02 0.0027 21.4 6.0 74 40-114 2-80 (89)
158 cd07596 BAR_SNX The Bin/Amphip 40.2 1.9E+02 0.0041 23.0 7.9 20 43-62 119-138 (218)
159 PF06103 DUF948: Bacterial pro 40.1 1.4E+02 0.0029 21.3 8.1 23 40-62 25-47 (90)
160 PF04961 FTCD_C: Formiminotran 39.7 1.2E+02 0.0025 25.1 6.5 45 16-62 22-66 (184)
161 KOG1029 Endocytic adaptor prot 39.4 45 0.00097 34.2 4.5 14 39-52 318-331 (1118)
162 PF04912 Dynamitin: Dynamitin 39.2 62 0.0013 29.6 5.2 22 41-62 94-115 (388)
163 PF10498 IFT57: Intra-flagella 39.0 70 0.0015 29.4 5.4 22 73-94 332-353 (359)
164 PF08390 TRAM1: TRAM1-like pro 38.9 44 0.00095 23.0 3.2 24 147-170 26-49 (65)
165 PF05366 Sarcolipin: Sarcolipi 38.7 42 0.00091 20.0 2.6 23 20-43 9-31 (31)
166 PF03961 DUF342: Protein of un 38.7 94 0.002 28.9 6.4 22 41-62 334-355 (451)
167 PF07106 TBPIP: Tat binding pr 38.3 1.1E+02 0.0025 24.4 6.1 23 73-95 113-135 (169)
168 PRK09173 F0F1 ATP synthase sub 37.9 2E+02 0.0043 22.6 8.1 6 31-36 17-22 (159)
169 PF03938 OmpH: Outer membrane 37.9 66 0.0014 25.0 4.5 21 42-62 44-64 (158)
170 PF07303 Occludin_ELL: Occludi 37.8 56 0.0012 24.6 3.9 23 41-63 22-44 (101)
171 COG2919 Septum formation initi 37.8 1.8E+02 0.004 22.1 7.9 35 28-62 37-71 (117)
172 PRK14900 valS valyl-tRNA synth 37.7 63 0.0014 33.8 5.5 54 43-97 844-905 (1052)
173 PF04508 Pox_A_type_inc: Viral 37.7 55 0.0012 18.5 2.8 20 42-61 2-21 (23)
174 PRK01919 tatB sec-independent 37.5 1.4E+02 0.003 24.9 6.4 16 10-25 4-19 (169)
175 PF08776 VASP_tetra: VASP tetr 37.3 1.1E+02 0.0024 19.6 5.3 22 41-62 3-25 (40)
176 PF04380 BMFP: Membrane fusoge 37.0 49 0.0011 23.7 3.3 24 39-62 48-71 (79)
177 PF04880 NUDE_C: NUDE protein, 36.9 47 0.001 27.4 3.6 18 75-92 30-47 (166)
178 KOG3647 Predicted coiled-coil 36.8 91 0.002 28.1 5.6 21 42-62 141-161 (338)
179 PF08182 Pedibin: Pedibin/Hym- 36.2 68 0.0015 19.9 3.3 31 46-87 2-32 (35)
180 TIGR03592 yidC_oxa1_cterm memb 36.0 2.4E+02 0.0051 22.9 10.9 18 45-62 26-43 (181)
181 PF10960 DUF2762: Protein of u 35.4 1.3E+02 0.0028 21.4 5.2 15 24-38 11-25 (71)
182 PRK11677 hypothetical protein; 35.3 1.9E+02 0.0042 23.0 6.8 41 19-62 3-43 (134)
183 PRK10884 SH3 domain-containing 34.5 2.1E+02 0.0044 24.3 7.2 20 42-61 94-113 (206)
184 COG4026 Uncharacterized protei 34.0 2E+02 0.0044 25.3 7.2 67 25-96 114-183 (290)
185 PF10319 7TM_GPCR_Srj: Serpent 33.8 1.3E+02 0.0028 27.3 6.2 52 77-131 236-297 (310)
186 PF04065 Not3: Not1 N-terminal 33.6 79 0.0017 27.4 4.7 43 44-87 4-63 (233)
187 PF14257 DUF4349: Domain of un 33.4 85 0.0018 26.9 4.8 22 41-62 132-153 (262)
188 KOG1510 RNA polymerase II holo 33.4 1.6E+02 0.0034 23.8 5.9 14 75-88 115-128 (139)
189 PRK03449 putative inner membra 33.4 1.8E+02 0.0038 26.2 7.0 19 40-58 58-76 (304)
190 PRK03830 small acid-soluble sp 33.2 1.2E+02 0.0026 21.9 4.7 24 39-62 7-30 (73)
191 PF06673 L_lactis_ph-MCP: Lact 33.0 75 0.0016 27.7 4.4 31 42-72 19-49 (347)
192 KOG0447 Dynamin-like GTP bindi 32.9 1.2E+02 0.0027 30.3 6.2 40 40-89 225-264 (980)
193 PRK14720 transcript cleavage f 32.5 1.1E+02 0.0024 31.7 6.1 58 38-96 752-819 (906)
194 PF14335 DUF4391: Domain of un 32.4 86 0.0019 26.4 4.7 15 48-62 182-196 (221)
195 PF12210 Hrs_helical: Hepatocy 32.4 1.8E+02 0.0039 22.0 5.8 44 14-62 31-74 (96)
196 PRK11020 hypothetical protein; 32.3 1.1E+02 0.0025 23.9 4.8 25 38-62 28-52 (118)
197 PRK09039 hypothetical protein; 32.3 78 0.0017 28.7 4.6 62 41-104 137-202 (343)
198 PRK10920 putative uroporphyrin 32.3 2.2E+02 0.0048 26.6 7.6 23 39-61 58-80 (390)
199 PRK09609 hypothetical protein; 32.1 1.7E+02 0.0038 26.6 6.7 40 22-62 86-126 (312)
200 PF13314 DUF4083: Domain of un 32.0 1.3E+02 0.0029 20.7 4.6 20 17-36 12-31 (58)
201 PF10828 DUF2570: Protein of u 32.0 2.1E+02 0.0045 21.5 6.3 20 38-57 22-41 (110)
202 PF08496 Peptidase_S49_N: Pept 31.9 1.2E+02 0.0026 24.7 5.2 9 42-50 50-58 (155)
203 PF02949 7tm_6: 7tm Odorant re 31.9 2.9E+02 0.0063 22.7 9.4 21 33-53 22-42 (313)
204 PF09973 DUF2208: Predicted me 31.9 2.9E+02 0.0062 24.0 7.8 35 75-111 71-105 (233)
205 KOG2470 Similar to IMP-GMP spe 31.8 1.2E+02 0.0025 28.7 5.6 38 25-62 372-409 (510)
206 PF06936 Selenoprotein_S: Sele 31.6 97 0.0021 26.1 4.7 12 141-152 168-179 (190)
207 PF14127 DUF4294: Domain of un 31.5 1.1E+02 0.0024 25.1 4.9 55 41-96 27-89 (157)
208 KOG3385 V-SNARE [Intracellular 31.4 1.6E+02 0.0034 23.1 5.5 71 47-117 35-116 (118)
209 PLN02381 valyl-tRNA synthetase 31.4 1E+02 0.0022 32.4 5.8 53 42-95 998-1058(1066)
210 COG4026 Uncharacterized protei 31.4 1.3E+02 0.0028 26.5 5.6 16 40-55 134-149 (290)
211 PF08657 DASH_Spc34: DASH comp 31.3 1.5E+02 0.0032 26.1 6.0 19 74-92 237-255 (259)
212 PF04888 SseC: Secretion syste 30.8 3.2E+02 0.007 23.8 8.2 20 74-94 38-57 (306)
213 PF09991 DUF2232: Predicted me 30.6 3E+02 0.0065 23.1 7.8 118 11-137 80-200 (290)
214 PRK10884 SH3 domain-containing 30.6 89 0.0019 26.5 4.4 12 81-92 158-169 (206)
215 PRK05729 valS valyl-tRNA synth 30.4 75 0.0016 32.3 4.6 20 44-63 807-826 (874)
216 TIGR03185 DNA_S_dndD DNA sulfu 30.3 90 0.002 30.5 5.0 22 41-62 421-442 (650)
217 PF15062 ARL6IP6: Haemopoietic 30.3 36 0.00079 25.2 1.7 22 18-39 25-46 (85)
218 KOG4552 Vitamin-D-receptor int 30.3 1.5E+02 0.0032 25.9 5.6 55 34-92 50-104 (272)
219 PRK11637 AmiB activator; Provi 30.2 1.2E+02 0.0025 28.0 5.5 15 78-92 105-119 (428)
220 COG3879 Uncharacterized protei 29.7 1.9E+02 0.0042 25.4 6.4 25 39-64 49-73 (247)
221 PF04350 PilO: Pilus assembly 29.7 2.1E+02 0.0046 21.5 6.1 48 44-95 2-49 (144)
222 PF14479 HeLo: Prion-inhibitio 29.7 38 0.00082 27.7 2.0 32 30-62 150-181 (212)
223 PHA02047 phage lambda Rz1-like 29.7 2.6E+02 0.0055 21.4 8.4 18 45-62 31-48 (101)
224 PF08663 HalX: HalX domain; I 29.5 74 0.0016 22.6 3.2 30 32-62 28-57 (71)
225 COG4988 CydD ABC-type transpor 28.7 4.8E+02 0.01 25.7 9.5 37 97-135 122-159 (559)
226 PF03938 OmpH: Outer membrane 28.7 1.5E+02 0.0033 22.9 5.2 15 73-87 80-94 (158)
227 PF03962 Mnd1: Mnd1 family; I 28.7 2.1E+02 0.0045 23.7 6.3 24 41-64 76-99 (188)
228 PRK09467 envZ osmolarity senso 28.5 4.1E+02 0.0089 23.4 8.8 20 18-37 155-174 (435)
229 PRK01315 putative inner membra 28.4 2.5E+02 0.0054 25.6 7.1 20 40-59 68-87 (329)
230 COG2348 Peptidoglycan interpep 28.4 1.3E+02 0.0028 28.4 5.5 51 42-93 247-297 (418)
231 cd00089 HR1 Protein kinase C-r 28.3 73 0.0016 22.0 3.0 52 45-96 6-62 (72)
232 KOG4253 Tryptophan-rich basic 28.2 3.5E+02 0.0076 22.5 8.2 62 73-135 70-132 (175)
233 KOG3883 Ras family small GTPas 28.2 29 0.00063 29.0 1.0 28 34-62 88-115 (198)
234 PRK09973 putative outer membra 27.8 1.1E+02 0.0023 22.7 3.8 22 41-62 24-45 (85)
235 PF07851 TMPIT: TMPIT-like pro 27.7 1.7E+02 0.0036 26.8 5.9 20 153-172 157-176 (330)
236 PF07851 TMPIT: TMPIT-like pro 27.2 1.3E+02 0.0028 27.6 5.1 21 73-93 65-85 (330)
237 PF13907 DUF4208: Domain of un 27.1 2.6E+02 0.0056 20.6 6.7 64 38-106 10-83 (100)
238 smart00786 SHR3_chaperone ER m 26.9 1.6E+02 0.0034 25.1 5.2 27 23-51 143-169 (196)
239 PRK15374 pathogenicity island 26.8 6.3E+02 0.014 25.0 9.9 75 22-109 257-332 (593)
240 cd07627 BAR_Vps5p The Bin/Amph 26.8 2E+02 0.0044 24.0 5.9 22 88-109 173-200 (216)
241 PF14584 DUF4446: Protein of u 26.7 2.2E+02 0.0047 23.0 5.9 10 78-87 69-78 (151)
242 PF11286 DUF3087: Protein of u 26.6 2.8E+02 0.0061 23.0 6.5 18 45-62 84-101 (165)
243 KOG1666 V-SNARE [Intracellular 26.5 3.7E+02 0.0079 23.3 7.4 58 38-96 125-183 (220)
244 PF02403 Seryl_tRNA_N: Seryl-t 26.3 1E+02 0.0022 22.6 3.7 22 41-62 36-57 (108)
245 PF12597 DUF3767: Protein of u 26.3 2.3E+02 0.005 21.9 5.7 15 22-36 72-86 (118)
246 PRK09546 zntB zinc transporter 26.3 4.5E+02 0.0097 23.1 10.6 23 97-120 264-286 (324)
247 PF13864 Enkurin: Calmodulin-b 26.3 2.4E+02 0.0051 20.7 5.6 23 73-95 71-93 (98)
248 KOG2639 Sodium sulfate symport 26.2 1.9E+02 0.004 28.8 6.1 29 13-41 353-381 (685)
249 TIGR03090 SASP_tlp small, acid 26.1 2.3E+02 0.0049 20.3 5.1 24 39-62 6-29 (70)
250 cd07307 BAR The Bin/Amphiphysi 26.1 2.3E+02 0.005 21.4 5.8 13 76-88 128-140 (194)
251 PRK12586 putative monovalent c 26.0 67 0.0015 26.0 2.7 15 48-62 106-120 (145)
252 PF14235 DUF4337: Domain of un 25.9 3.6E+02 0.0077 21.8 7.0 13 16-28 7-19 (157)
253 COG3883 Uncharacterized protei 25.9 1.5E+02 0.0032 26.4 5.1 20 43-62 33-52 (265)
254 KOG2301 Voltage-gated Ca2+ cha 25.8 5E+02 0.011 28.9 9.8 26 8-34 1219-1244(1592)
255 PF14193 DUF4315: Domain of un 25.8 2E+02 0.0044 21.0 5.0 21 42-62 2-22 (83)
256 TIGR03488 cas_Cas5p CRISPR-ass 25.8 68 0.0015 27.1 2.8 44 13-58 37-80 (237)
257 PHA03049 IMV membrane protein; 25.7 66 0.0014 22.9 2.3 19 11-29 1-19 (68)
258 PF04999 FtsL: Cell division p 25.7 2.6E+02 0.0056 20.1 6.6 20 43-62 44-63 (97)
259 PF09919 DUF2149: Uncharacteri 25.6 42 0.00092 25.0 1.4 22 8-29 3-24 (92)
260 COG1862 YajC Preprotein transl 25.6 1.7E+02 0.0036 22.1 4.6 27 31-62 20-46 (97)
261 KOG0804 Cytoplasmic Zn-finger 25.5 1E+02 0.0022 29.6 4.1 21 42-62 383-403 (493)
262 PF06790 UPF0259: Uncharacteri 25.2 4.6E+02 0.01 22.9 8.5 35 14-48 19-53 (248)
263 PLN02943 aminoacyl-tRNA ligase 25.2 1.1E+02 0.0023 31.8 4.7 19 45-63 886-904 (958)
264 TIGR00219 mreC rod shape-deter 25.2 3.2E+02 0.0069 24.1 7.1 19 42-60 67-85 (283)
265 PF07946 DUF1682: Protein of u 25.1 2.7E+02 0.0058 24.9 6.7 15 38-52 252-266 (321)
266 PF11932 DUF3450: Protein of u 25.1 1.4E+02 0.0031 25.4 4.8 21 76-96 77-97 (251)
267 PF14772 NYD-SP28: Sperm tail 24.7 2.9E+02 0.0062 20.3 5.8 52 31-92 41-92 (104)
268 PF15619 Lebercilin: Ciliary p 24.7 1.5E+02 0.0032 24.9 4.7 31 33-63 4-34 (194)
269 cd07607 BAR_SH3P_plant The Bin 24.6 2.8E+02 0.0061 23.7 6.3 48 41-92 109-159 (209)
270 PF14265 DUF4355: Domain of un 24.5 3.1E+02 0.0067 20.6 6.4 34 71-104 44-77 (125)
271 COG4298 Uncharacterized protei 24.3 1.6E+02 0.0035 22.0 4.2 21 42-62 64-84 (95)
272 COG3879 Uncharacterized protei 24.3 4.7E+02 0.01 23.0 7.8 11 52-62 54-64 (247)
273 PF06695 Sm_multidrug_ex: Puta 24.2 3.3E+02 0.0072 20.8 6.4 17 13-29 14-30 (121)
274 PF12097 DUF3573: Protein of u 24.2 1.6E+02 0.0035 27.3 5.1 25 39-63 40-64 (383)
275 PRK11878 psaM photosystem I re 24.2 1.2E+02 0.0025 18.8 2.9 23 12-34 7-29 (34)
276 PF07544 Med9: RNA polymerase 24.1 2.8E+02 0.006 19.9 5.9 54 43-96 23-79 (83)
277 PRK10780 periplasmic chaperone 24.1 1.7E+02 0.0037 23.4 4.8 19 33-52 32-50 (165)
278 PF07971 Glyco_hydro_92: Glyco 24.0 48 0.001 31.8 1.8 26 138-165 400-426 (502)
279 PRK02868 hypothetical protein; 23.8 5E+02 0.011 22.7 8.4 96 14-125 16-112 (245)
280 PF03904 DUF334: Domain of unk 23.7 5E+02 0.011 22.7 8.0 15 97-111 154-168 (230)
281 PF10234 Cluap1: Clusterin-ass 23.6 1.4E+02 0.0031 26.5 4.5 29 73-101 194-223 (267)
282 PF05961 Chordopox_A13L: Chord 23.6 57 0.0012 23.2 1.6 18 11-28 1-18 (68)
283 KOG0406 Glutathione S-transfer 23.2 2.1E+02 0.0045 24.9 5.4 58 38-96 90-149 (231)
284 COG3750 Uncharacterized protei 23.1 81 0.0018 23.2 2.4 17 76-92 21-37 (85)
285 TIGR02230 ATPase_gene1 F0F1-AT 23.0 2.9E+02 0.0062 20.9 5.5 8 113-120 61-68 (100)
286 cd07599 BAR_Rvs167p The Bin/Am 23.0 1.3E+02 0.0027 25.0 4.0 18 75-92 155-172 (216)
287 COG4575 ElaB Uncharacterized c 23.0 3.1E+02 0.0068 21.0 5.7 50 44-95 11-60 (104)
288 PF05382 Amidase_5: Bacterioph 23.0 62 0.0013 26.0 2.0 22 143-164 24-45 (145)
289 PF03114 BAR: BAR domain; Int 22.8 3.3E+02 0.0071 21.4 6.3 19 75-93 167-185 (229)
290 PRK03100 sec-independent trans 22.6 4E+02 0.0088 21.3 7.1 20 6-25 1-20 (136)
291 PF02344 Myc-LZ: Myc leucine z 22.4 2E+02 0.0042 17.6 3.8 19 44-62 4-22 (32)
292 PRK13428 F0F1 ATP synthase sub 22.4 5.1E+02 0.011 24.3 8.3 6 31-36 17-22 (445)
293 COG2165 PulG Type II secretory 22.4 3.1E+02 0.0068 19.9 5.9 8 21-28 22-29 (149)
294 PRK01001 putative inner membra 22.3 6E+02 0.013 26.2 9.0 13 161-173 708-720 (795)
295 TIGR01837 PHA_granule_1 poly(h 22.3 1.4E+02 0.0031 22.9 3.8 20 39-58 94-113 (118)
296 PF12848 ABC_tran_2: ABC trans 22.3 1.1E+02 0.0024 21.2 3.0 8 74-81 63-70 (85)
297 KOG3838 Mannose lectin ERGIC-5 22.3 1.1E+02 0.0024 29.0 3.7 20 44-63 275-294 (497)
298 PF09677 TrbI_Ftype: Type-F co 22.2 3.6E+02 0.0079 20.6 6.5 43 14-56 3-48 (111)
299 PRK09039 hypothetical protein; 22.1 3.5E+02 0.0076 24.5 6.9 27 30-59 38-64 (343)
300 COG3937 Uncharacterized conser 22.0 1.6E+02 0.0035 22.8 4.0 19 74-92 88-106 (108)
301 PF05644 Miff: Mitochondrial a 22.0 1.8E+02 0.0038 25.5 4.8 34 75-118 208-242 (246)
302 cd07597 BAR_SNX8 The Bin/Amphi 21.9 3.5E+02 0.0077 23.1 6.7 49 38-93 137-190 (246)
303 COG2433 Uncharacterized conser 21.8 2E+02 0.0043 28.7 5.5 44 129-175 520-569 (652)
304 PLN02320 seryl-tRNA synthetase 21.7 1.3E+02 0.0028 29.1 4.2 22 41-62 100-121 (502)
305 COG4942 Membrane-bound metallo 21.6 1.9E+02 0.0041 27.4 5.2 17 43-59 40-56 (420)
306 PF13801 Metal_resist: Heavy-m 21.5 3E+02 0.0066 19.4 6.1 23 75-97 86-108 (125)
307 PLN03229 acetyl-coenzyme A car 21.5 2.2E+02 0.0048 29.0 5.8 39 53-92 671-712 (762)
308 PRK05886 yajC preprotein trans 21.4 1.5E+02 0.0033 22.7 3.8 23 34-58 18-40 (109)
309 PF12808 Mto2_bdg: Micro-tubul 21.3 2.7E+02 0.0058 18.7 5.4 48 48-98 4-51 (52)
310 PRK14127 cell division protein 21.2 2.2E+02 0.0047 21.9 4.6 19 42-60 38-56 (109)
311 PF00816 Histone_HNS: H-NS his 21.2 2.4E+02 0.0053 20.2 4.8 36 45-89 2-37 (93)
312 PF06295 DUF1043: Protein of u 21.2 2.9E+02 0.0063 21.4 5.5 14 49-62 26-39 (128)
313 COG4605 CeuC ABC-type enteroch 21.1 1.6E+02 0.0034 26.8 4.3 41 8-50 123-167 (316)
314 KOG2447 Oligosaccharyltransfer 21.1 1.8E+02 0.0039 26.1 4.7 46 97-144 198-244 (287)
315 KOG0804 Cytoplasmic Zn-finger 21.1 1.6E+02 0.0034 28.3 4.5 70 27-96 325-402 (493)
316 PRK06975 bifunctional uroporph 21.0 3.6E+02 0.0078 26.7 7.2 13 75-87 384-396 (656)
317 PF03978 Borrelia_REV: Borreli 20.9 2.4E+02 0.0052 23.3 5.0 22 39-60 45-66 (160)
318 COG5415 Predicted integral mem 20.9 5.1E+02 0.011 22.6 7.2 13 51-63 110-122 (251)
319 PF05752 Calici_MSP: Calicivir 20.9 2.6E+02 0.0057 23.2 5.3 22 75-96 45-66 (167)
320 KOG1850 Myosin-like coiled-coi 20.9 4.7E+02 0.01 24.3 7.3 42 21-63 224-265 (391)
321 PLN02381 valyl-tRNA synthetase 20.8 1.4E+02 0.0031 31.3 4.6 19 45-63 994-1012(1066)
322 COG1133 SbmA ABC-type long-cha 20.8 6.8E+02 0.015 23.2 12.8 79 77-177 186-266 (405)
323 PRK10780 periplasmic chaperone 20.8 2.6E+02 0.0057 22.3 5.3 12 76-87 90-101 (165)
324 PTZ00419 valyl-tRNA synthetase 20.6 1.5E+02 0.0032 30.7 4.7 18 45-62 926-943 (995)
325 PRK05431 seryl-tRNA synthetase 20.6 1.5E+02 0.0032 27.7 4.3 20 42-61 36-55 (425)
326 PF07439 DUF1515: Protein of u 20.6 3.5E+02 0.0077 21.0 5.6 18 42-59 9-26 (112)
327 PF14048 MBD_C: C-terminal dom 20.5 1.2E+02 0.0025 22.8 2.9 26 34-60 70-95 (96)
328 PF11262 Tho2: Transcription f 20.4 2.5E+02 0.0055 24.8 5.6 18 39-59 25-42 (298)
329 cd07667 BAR_SNX30 The Bin/Amph 20.4 3.9E+02 0.0083 23.3 6.5 24 38-61 171-194 (240)
330 PF01105 EMP24_GP25L: emp24/gp 20.3 43 0.00094 25.8 0.6 23 40-62 111-133 (183)
331 KOG1666 V-SNARE [Intracellular 20.3 4.9E+02 0.011 22.5 7.0 40 77-116 178-217 (220)
332 PF04111 APG6: Autophagy prote 20.3 2.5E+02 0.0055 25.1 5.6 8 124-131 159-166 (314)
333 TIGR02115 potass_kdpF K+-trans 20.2 1.4E+02 0.003 17.3 2.5 24 19-44 2-25 (26)
334 PRK00708 sec-independent trans 20.2 4.1E+02 0.0089 22.8 6.5 17 9-25 3-19 (209)
335 PRK12704 phosphodiesterase; Pr 20.2 4.9E+02 0.011 25.1 7.8 6 31-36 19-24 (520)
336 KOG3091 Nuclear pore complex, 20.2 3.4E+02 0.0074 26.4 6.6 55 30-91 337-391 (508)
337 PF10498 IFT57: Intra-flagella 20.1 2.5E+02 0.0055 25.8 5.6 17 43-59 275-291 (359)
338 PF14880 COX14: Cytochrome oxi 20.1 2.8E+02 0.0062 18.6 5.3 29 17-46 17-45 (59)
339 PF04568 IATP: Mitochondrial A 20.1 1.7E+02 0.0036 22.2 3.7 16 76-91 83-98 (100)
340 PTZ00382 Variant-specific surf 20.1 56 0.0012 24.4 1.1 10 31-40 85-94 (96)
No 1
>KOG3312 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.1e-67 Score=421.96 Aligned_cols=181 Identities=57% Similarity=0.947 Sum_probs=174.9
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHH
Q 029363 9 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKES 88 (194)
Q Consensus 9 ~~~~~d~l~I~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~ 88 (194)
++|++|+++|++||++||+++|+++|+||||+++|++|++++++.+|+||+.|+ ..+ +++||.++||+||.|+.+++.
T Consensus 2 s~m~aDtlliv~Is~cTAl~~EgitWvlvYRt~~Yk~LKa~vdK~sKKLE~~K~-~~~-~s~~k~~kkKieR~Ee~LK~~ 79 (186)
T KOG3312|consen 2 SFMYADTLLIVFISFCTALLGEGITWVLVYRTDKYKRLKAEVDKQSKKLEKKKE-ENG-DSNDKSKKKKIERVEEKLKNN 79 (186)
T ss_pred cccccceeeeeHHHHHHHHHhCCceEEEEEehhHHHHHHHHHHHHHHHHHHHhh-hcc-cchhhHHHHHHHHHHHHHhcc
Confidence 689999999999999999999999999999999999999999999999999999 444 578999999999999999999
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHhhcCccccccCCcchHHHHHHhcCCCCCCCCCcchHHHHHHHHHHhhHHHHH
Q 029363 89 SRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQ 168 (194)
Q Consensus 89 ~~el~~~k~ksm~~~~l~~i~~f~l~~~~f~g~~VakLPF~pi~~~~~~thrgL~G~d~tdcs~if~Y~Lcsm~~r~~iq 168 (194)
+|||+++|||+|+++|+.|.++++++|++|+|+|||||||.||+++|+++||||.|+|.|||||+|+|+||+|++|||||
T Consensus 80 nRDlSl~kmKsmfaigl~ftal~~~fNSiFeGrVVAkLPF~Pis~iqglSHRnL~GdD~TDCSfiFLYiLCtmsiRqNlQ 159 (186)
T KOG3312|consen 80 NRDLSLFKMKSMFAIGLAFTALLGMFNSIFEGRVVAKLPFTPISIIQGLSHRNLKGDDMTDCSFIFLYILCTMSIRQNLQ 159 (186)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhhcceeEEecCCcchHHHhcccccCCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCccCCCCCCCCCCC
Q 029363 169 KFLGFSPPRGAAAGGGLFPMPDP 191 (194)
Q Consensus 169 KlLG~~~~~~~~~~~~~~~~~~~ 191 (194)
|+|||+|||++++|+|.|+.|++
T Consensus 160 K~LGfaPsRaaa~q~~~~~~P~p 182 (186)
T KOG3312|consen 160 KILGFAPSRAAAKQGGGFPGPPP 182 (186)
T ss_pred HHhCcCCchhHhhcCCCCCCCCC
Confidence 99999999999999987777665
No 2
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=100.00 E-value=2.3e-39 Score=262.80 Aligned_cols=154 Identities=29% Similarity=0.432 Sum_probs=141.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhh
Q 029363 14 DSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLS 93 (194)
Q Consensus 14 d~l~I~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~ 93 (194)
-+++|+++|+++++++|+++|.+|||+ +.+.|.+.++++++.+++++ .+ +.++.||+|+.|+++++.+.+++
T Consensus 15 ~~i~v~~~~~~~~~~s~l~~~~~i~~~--~~~~~~~~~~~~~~~~~l~~-~~-----~~~~~~~l~~~~~~~~~~~~~~~ 86 (168)
T PF01956_consen 15 ITIVVFLIAILRGLISELLQKFLIDRK--MDKYQKRMKEFQKRYRELRK-NG-----DFKKPKKLEKRQMELMEKQQEMM 86 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccc--cHHHHHHHHHHHHHHHHHHH-cC-----CccCHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999666 56667777777777777777 33 35668999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhcCccccccCCcchHHHHHHhcCCCCCCCCCcchHHHHHHHHHHhhHHHHHHHhCC
Q 029363 94 LFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGF 173 (194)
Q Consensus 94 ~~k~ksm~~~~l~~i~~f~l~~~~f~g~~VakLPF~pi~~~~~~thrgL~G~d~tdcs~if~Y~Lcsm~~r~~iqKlLG~ 173 (194)
+.+||||++++++++++|++++++|.|.+|+|+||.|+++|+.++|||++|.|+++|||++|||||||++|+++||+||.
T Consensus 87 ~~~mK~~~~~~v~~i~i~~wi~~~f~g~vv~klPFpl~~~f~~~~qrgl~~~d~~~~s~i~wYfL~s~~~~~vi~k~lg~ 166 (168)
T PF01956_consen 87 MMMMKPMFVTMVPQIPIFYWINYFFSGFVVAKLPFPLTGRFKSMLQRGLEGLDVSYVSSISWYFLCSFGLRQVIRKLLGE 166 (168)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhcceEEeeccccHHHhHHhhcCCCCCcccHhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 029363 174 SP 175 (194)
Q Consensus 174 ~~ 175 (194)
++
T Consensus 167 ~n 168 (168)
T PF01956_consen 167 NN 168 (168)
T ss_pred CC
Confidence 75
No 3
>COG1422 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=223.53 Aligned_cols=154 Identities=18% Similarity=0.206 Sum_probs=131.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhh
Q 029363 13 SDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDL 92 (194)
Q Consensus 13 ~d~l~I~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el 92 (194)
.=.++|+++|++||++++++++++| |.|+++++|++++++||+.+||++ +++ .++-||+|+.|+|.++.|+||
T Consensus 45 ~p~lvilV~avi~gl~~~i~~~~li-D~ekm~~~qk~m~efq~e~~eA~~-~~d-----~~~lkkLq~~qmem~~~Q~el 117 (201)
T COG1422 45 PPHLVILVAAVITGLYITILQKLLI-DQEKMKELQKMMKEFQKEFREAQE-SGD-----MKKLKKLQEKQMEMMDDQREL 117 (201)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHH-hCC-----HHHHHHHHHHHHHHHHHHHHH
Confidence 3467999999999999999999997 999999999999999999999999 544 455667777777777789999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhhcCccccccCCcchHHH--HHHhcCCCCCCCCCcchHHHHHHHHHHhhHHHHHHH
Q 029363 93 SLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGIV--MKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKF 170 (194)
Q Consensus 93 ~~~k~ksm~~~~l~~i~~f~l~~~~f~g~~VakLPF~pi~~~--~~~thrgL~G~d~tdcs~if~Y~Lcsm~~r~~iqKl 170 (194)
++..||||++|++++|++|.++..+..+....+-|++.+.|. +.+||.++.|+. .+|++||||||++++|+|||.
T Consensus 118 mk~qfkPM~~~~v~tI~~F~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~gWi~WYfLcS~~vs~ilrk~ 194 (201)
T COG1422 118 MKMQFKPMLYISVLTIPFFAWLRWFVGTGGYLVSEPNMALPTLFHILYHTAVFGDF---LGWIGWYFLCSFVVSQILRKV 194 (201)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHccCcccccCccchhHHhhhhhhhccccccc---hHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999954444444477777776666553 477999998887 999999999999999999999
Q ss_pred hCCCCC
Q 029363 171 LGFSPP 176 (194)
Q Consensus 171 LG~~~~ 176 (194)
||++..
T Consensus 195 l~i~~~ 200 (201)
T COG1422 195 LNIAVF 200 (201)
T ss_pred HhcccC
Confidence 998764
No 4
>KOG3188 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=2.7e-08 Score=84.30 Aligned_cols=84 Identities=25% Similarity=0.300 Sum_probs=75.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhhcCccccccCCcchHHHHHHhcCCCCCC--CCCcchHHHHHHHHHHhhHHHHHH
Q 029363 92 LSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGD--DATDCSMAFLYFLCSISIRTNLQK 169 (194)
Q Consensus 92 l~~~k~ksm~~~~l~~i~~f~l~~~~f~g~~VakLPF~pi~~~~~~thrgL~G~--d~tdcs~if~Y~Lcsm~~r~~iqK 169 (194)
+.+..+|.++...++.+++++|+|.+|.|.+..|+||...-.|..+.++|+.-. |+...|.+.|||||-+|.|.+-.-
T Consensus 107 mlmdmmKgNm~~viPqtii~~WiN~fFSGFv~~kvPFPLTlrFK~MlQ~Gi~l~~LDv~wVSS~SWYFLnvfGLrsiysL 186 (246)
T KOG3188|consen 107 MLMDMMKGNMANVIPQTIIGGWINWFFSGFVTTKVPFPLTLRFKSMLQRGIDLQDLDVSWVSSASWYFLNVFGLRSIYSL 186 (246)
T ss_pred HHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHcCchhhhcchhHhhhhHHHHHHHhhhHHHHHH
Confidence 455559999999999999999999999999999999988888999999998744 666678899999999999999999
Q ss_pred HhCCCC
Q 029363 170 FLGFSP 175 (194)
Q Consensus 170 lLG~~~ 175 (194)
+||-..
T Consensus 187 iLG~~N 192 (246)
T KOG3188|consen 187 ILGEEN 192 (246)
T ss_pred Hhcccc
Confidence 999665
No 5
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=98.29 E-value=1.8e-06 Score=70.22 Aligned_cols=113 Identities=19% Similarity=0.185 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhCCCccccch-----hhhHHhHHHHHHHHHHhhhhhhhhhh----hhHHHHHHHHHHHHHH
Q 029363 44 KTLKSSIDKASKKLETMKIENPAKISTKK-----SKTKKIDRVETSLKESSRDLSLFKFK----SGAVVALVLFVVFGLL 114 (194)
Q Consensus 44 ~klq~~~~~~~kkl~k~ke~~~~~~~~~k-----~~~kkler~e~el~~~~~el~~~k~k----sm~~~~l~~i~~f~l~ 114 (194)
.+.-++..++++|+.++++|..+..+.|. |.++|++++++|+.+++++....+.+ -..+..+++.+.+..+
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 115 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWVLTTLPFFVL 115 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH------------
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444555555555555554322223343 78899999999999988888777632 2333444455555577
Q ss_pred HHhhcCccccccCCcch-HHHHHH--hcCCCCCCCCCcchHHHHHHHHH
Q 029363 115 NSLFEGKVVAKLPFKPF-GIVMKM--SHRGLQGDDATDCSMAFLYFLCS 160 (194)
Q Consensus 115 ~~~f~g~~VakLPF~pi-~~~~~~--thrgL~G~d~tdcs~if~Y~Lcs 160 (194)
..||-..+|..+|-.-+ .|+..+ ..++..| ..|-.+|=+.|+
T Consensus 116 ~~~~rk~pV~~lp~~~~p~p~~~lLSfP~~~~g----aVsi~~W~~ac~ 160 (161)
T PF04420_consen 116 RFWYRKTPVFYLPKGWFPWPFEWLLSFPTAPLG----AVSITVWLFACN 160 (161)
T ss_dssp -------------------------------------------------
T ss_pred heeecCceEEEECchhhHHHHHHheecccCCCC----ceehHHHHHHhc
Confidence 77888889999995555 455544 3444444 378888888885
No 6
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=97.08 E-value=0.012 Score=53.87 Aligned_cols=68 Identities=16% Similarity=0.237 Sum_probs=41.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh---hhhhHHHHHHHHHHHHHHH
Q 029363 39 RTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK---FKSGAVVALVLFVVFGLLN 115 (194)
Q Consensus 39 r~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k---~ksm~~~~l~~i~~f~l~~ 115 (194)
.+++++++|-+++++++|.++. ++..+..++.++|++++.+|-...- +-|+++-+.+++++|..+.
T Consensus 158 s~~km~~lqPel~~Iq~Kyk~~-----------~~d~~~~~k~q~e~~~Lykk~ginP~~gclP~LiQ~Pif~aly~vl~ 226 (357)
T PRK02201 158 NQEKQEELQGKKAKIDAKYKDY-----------KKDKQMKQRKQQEIQELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQ 226 (357)
T ss_pred HHHHHHHhhHHHHHHHHHHhcc-----------cCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555322 1114456677788888666554433 6688888888888887776
Q ss_pred Hh
Q 029363 116 SL 117 (194)
Q Consensus 116 ~~ 117 (194)
+.
T Consensus 227 ~~ 228 (357)
T PRK02201 227 SL 228 (357)
T ss_pred hh
Confidence 54
No 7
>COG1422 Predicted membrane protein [Function unknown]
Probab=96.15 E-value=0.074 Score=45.11 Aligned_cols=82 Identities=15% Similarity=0.102 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhhhhhhHH
Q 029363 23 FCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAV 102 (194)
Q Consensus 23 ~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k~ksm~~ 102 (194)
+++|.+..+..-++=|..-+ +++|++.||+.++.|++. . +..+++.++|++|+|++++|+.++=.- -||--+=
T Consensus 51 lV~avi~gl~~~i~~~~liD----~ekm~~~qk~m~efq~e~-~-eA~~~~d~~~lkkLq~~qmem~~~Q~e-lmk~qfk 123 (201)
T COG1422 51 LVAAVITGLYITILQKLLID----QEKMKELQKMMKEFQKEF-R-EAQESGDMKKLKKLQEKQMEMMDDQRE-LMKMQFK 123 (201)
T ss_pred HHHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHH-H-HHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHhhh
Confidence 34444444444444222222 667778888888877732 2 345667899999999999999876533 3555555
Q ss_pred HHHHHHHHH
Q 029363 103 VALVLFVVF 111 (194)
Q Consensus 103 ~~l~~i~~f 111 (194)
-|+.++++.
T Consensus 124 PM~~~~v~t 132 (201)
T COG1422 124 PMLYISVLT 132 (201)
T ss_pred hHHHHHHHH
Confidence 555555555
No 8
>PRK01622 OxaA-like protein precursor; Validated
Probab=96.12 E-value=0.052 Score=47.29 Aligned_cols=65 Identities=6% Similarity=0.101 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhhhh----hhHHHHHHHHHHHHHHHH
Q 029363 47 KSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFK----SGAVVALVLFVVFGLLNS 116 (194)
Q Consensus 47 q~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k~k----sm~~~~l~~i~~f~l~~~ 116 (194)
+++|.++|-++++.++ +.. + ++..++.++.++|++++.+|-+..-++ |+++-+.+++++|..+.+
T Consensus 90 ~~km~~iqP~l~~iq~-kyk-~---~~d~~~~~~~~~e~~~Lyk~~gi~P~~~g~lp~liQ~Pif~~lf~~lr~ 158 (256)
T PRK01622 90 QEKMAVMKPELDKIQA-KLK-V---TKDLEKQKEYQKEMMELYKSGNINPLAMGCLPLLIQMPILSAFYYAIRR 158 (256)
T ss_pred HHHHHHhCHHHHHHHH-HHh-c---cCCHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555 321 0 111333345677778877766655444 666677777777766654
No 9
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=95.40 E-value=0.36 Score=45.34 Aligned_cols=40 Identities=10% Similarity=0.202 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHhhhhhhhh---hhhhHHHHHHHHHHHHHHHHh
Q 029363 78 IDRVETSLKESSRDLSLFK---FKSGAVVALVLFVVFGLLNSL 117 (194)
Q Consensus 78 ler~e~el~~~~~el~~~k---~ksm~~~~l~~i~~f~l~~~~ 117 (194)
.++.++|++++.++-+..- +-|+++-+.+|+++|..+.+.
T Consensus 84 ~~~~qqe~~~LyKe~ginP~~gcLP~LIQiPIfigLy~vir~m 126 (429)
T PRK00247 84 IRELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRM 126 (429)
T ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445567777666554333 667788888888888777774
No 10
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=95.30 E-value=1.3 Score=36.26 Aligned_cols=38 Identities=3% Similarity=0.138 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhhhhhhh---hhhhHHHHHHHHHHHHHHHH
Q 029363 79 DRVETSLKESSRDLSLFK---FKSGAVVALVLFVVFGLLNS 116 (194)
Q Consensus 79 er~e~el~~~~~el~~~k---~ksm~~~~l~~i~~f~l~~~ 116 (194)
++.++|++++.++-+..- +-|+++-+.+++++|..+++
T Consensus 50 ~~~~~e~~~l~k~~~~~p~~~~lp~liQ~Pif~~~~~~lr~ 90 (181)
T TIGR03592 50 QKLQQEMMKLYKEEGVNPLGGCLPLLIQMPIFIALYQVLRR 90 (181)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666555544433 44666666666666665554
No 11
>PRK01318 membrane protein insertase; Provisional
Probab=95.21 E-value=0.61 Score=44.73 Aligned_cols=108 Identities=14% Similarity=0.110 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhh--h-hhhhHHHHHHHHHHHHHHHHhhcCc
Q 029363 45 TLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLF--K-FKSGAVVALVLFVVFGLLNSLFEGK 121 (194)
Q Consensus 45 klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~--k-~ksm~~~~l~~i~~f~l~~~~f~g~ 121 (194)
+-.++|+++|-+++++|+ +.. ..-++.++|++++-++-... . +-|+++-+.+|+++|.++.+..+
T Consensus 347 ~s~~km~~lqP~~~~i~~-kyk---------~d~~k~~~e~~~LYKk~~vnPl~gclp~liQiPifialy~~l~~~~e-- 414 (521)
T PRK01318 347 VSMAKMKVLQPKMQELKE-KYK---------DDPQKMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSIE-- 414 (521)
T ss_pred HHHHHHHHhhHHHHHHHH-HhH---------hhHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHHHH--
Confidence 344566677777777777 322 01245667777755544333 2 66778888888888877766544
Q ss_pred cccccCCcchH-HHHHHhcCCCCCCCCCcchHHHHHHHHHHhhHHHHHHHhCCC
Q 029363 122 VVAKLPFKPFG-IVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFS 174 (194)
Q Consensus 122 ~VakLPF~pi~-~~~~~thrgL~G~d~tdcs~if~Y~Lcsm~~r~~iqKlLG~~ 174 (194)
+.-.|+. |++ .|.-+|++..=.+ ..+-.-|++.+.++--++-.
T Consensus 415 ----l~~~~fl~Wi~-----DLs~~Dp~~il~~-~~lPil~~~~~~~~~~l~~~ 458 (521)
T PRK01318 415 ----LRHAPFIGWIH-----DLSAPDPYFILHI-GLLPILMGITMFLQQKLNPT 458 (521)
T ss_pred ----hccCchheeec-----cccccccchhHHH-HHHHHHHHHHHHHHHHhcCC
Confidence 2223443 444 4544565422111 11122355666777766643
No 12
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=94.55 E-value=2.2 Score=35.00 Aligned_cols=63 Identities=6% Similarity=0.160 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhh--hhh-hhhhHHHHHHHHHHHHHHHHh
Q 029363 45 TLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLS--LFK-FKSGAVVALVLFVVFGLLNSL 117 (194)
Q Consensus 45 klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~--~~k-~ksm~~~~l~~i~~f~l~~~~ 117 (194)
|-.+++.+++.++++.++ +. ++.-++.++|++++-+|-+ ..+ +-|+++-+.+++.+|..+++.
T Consensus 27 ~~~~k~~~~~P~l~~i~~-k~---------~~~~~~~~~~~~~l~k~~~~~p~~~~~~~liq~Pif~~~~~~lr~~ 92 (198)
T PF02096_consen 27 RSSAKMQELQPELKEIQE-KY---------KEDQQKMQQEMQKLYKKHGVNPLKGCLPPLIQIPIFIGLFRALRRM 92 (198)
T ss_pred HHHHHHHHHHHHHHHHHH-hh---------hHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666665 21 1122234455555444433 322 445555666666666655554
No 13
>PRK00145 putative inner membrane protein translocase component YidC; Provisional
Probab=94.45 E-value=1.6 Score=37.14 Aligned_cols=63 Identities=5% Similarity=0.111 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh---hhhhHHHHHHHHHHHHHHHHh
Q 029363 45 TLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK---FKSGAVVALVLFVVFGLLNSL 117 (194)
Q Consensus 45 klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k---~ksm~~~~l~~i~~f~l~~~~ 117 (194)
+-.+++++++-++++.++ ... + | -+|.++|.+++.++-+..- +-|+++-..+++++|+.+++.
T Consensus 55 ~~~~km~~iqP~~~~i~~-k~k-~--d------~~~~~~e~~~Lyk~~~inp~~~~lp~liQiPif~~l~~~i~~~ 120 (223)
T PRK00145 55 KSSLRMNEIQPEIKKLQA-KYK-N--D------PQKLQQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNL 120 (223)
T ss_pred HHHHHHHHhhHHHHHHHH-HHH-c--c------HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455556666666665 211 0 1 1356667777666654333 456666677777777666553
No 14
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=94.27 E-value=0.96 Score=36.47 Aligned_cols=76 Identities=12% Similarity=0.072 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhcCccccccCCcchH-HHH-HHhcCCCCCCCCCcchHHHHHH
Q 029363 80 RVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFG-IVM-KMSHRGLQGDDATDCSMAFLYF 157 (194)
Q Consensus 80 r~e~el~~~~~el~~~k~ksm~~~~l~~i~~f~l~~~~f~g~~VakLPF~pi~-~~~-~~thrgL~G~d~tdcs~if~Y~ 157 (194)
...+.+.++..+.+.-.+--++.+.+++..+.+.+...-.++..- -|+.++. ..| ++ .++.+.+++-.+|-|+-.
T Consensus 77 ~~~~~~~~~~~~~mK~~~~~~v~~i~i~~wi~~~f~g~vv~klPF-pl~~~f~~~~qrgl--~~~d~~~~s~i~wYfL~s 153 (168)
T PF01956_consen 77 ELMEKQQEMMMMMMKPMFVTMVPQIPIFYWINYFFSGFVVAKLPF-PLTGRFKSMLQRGL--EGLDVSYVSSISWYFLCS 153 (168)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcceEEeec-cccHHHhHHhhcCC--CCCcccHhHHHHHHHHHH
Confidence 333344444444444444344444444444444444443333332 3344444 344 44 666666666666655544
Q ss_pred H
Q 029363 158 L 158 (194)
Q Consensus 158 L 158 (194)
.
T Consensus 154 ~ 154 (168)
T PF01956_consen 154 F 154 (168)
T ss_pred H
Confidence 3
No 15
>PRK02944 OxaA-like protein precursor; Validated
Probab=94.11 E-value=0.5 Score=41.20 Aligned_cols=66 Identities=3% Similarity=0.045 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh---hhhhHHHHHHHHHHHHHHHH
Q 029363 45 TLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK---FKSGAVVALVLFVVFGLLNS 116 (194)
Q Consensus 45 klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k---~ksm~~~~l~~i~~f~l~~~ 116 (194)
+-..+++++|-++++.++ +..++ | .+.-+|.++|.+++-++-+..- +-|+++-+.+++++|..+++
T Consensus 83 ~~~~km~~iqPe~~~iq~-kyk~~--~---~~~~~k~~~e~~~Lyk~~gvnP~~g~lp~liQ~Pifi~lf~~i~~ 151 (255)
T PRK02944 83 KSTKAMQALQPEMQKLKE-KYSSK--D---QATQQKLQQEMMQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMR 151 (255)
T ss_pred HHHHHHHHccHHHHHHHH-HHcCC--C---HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566666666666 32200 1 3344677778887655555433 56667777778888876654
No 16
>PRK02463 OxaA-like protein precursor; Provisional
Probab=93.23 E-value=0.7 Score=41.47 Aligned_cols=65 Identities=9% Similarity=0.078 Sum_probs=37.9
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh-----hhhhHHHHHHHHHHHHHH
Q 029363 40 TNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK-----FKSGAVVALVLFVVFGLL 114 (194)
Q Consensus 40 ~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k-----~ksm~~~~l~~i~~f~l~ 114 (194)
+++++.+|-+++++|+|++.+++ ++..++.++|++++.+|-+..- .-|+++-+.+++++|..+
T Consensus 90 ~~KM~~lqPe~~~Iq~Kyk~~~~------------~~~~~~~q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~aly~ai 157 (307)
T PRK02463 90 SEKMAYLKPVFEPINERLKNATT------------QEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFAA 157 (307)
T ss_pred HHHHHHhChhHHHHHHHHhcCCC------------hHHHHHHHHHHHHHHHHcCCCCccccchHHHHHHHHHHHHHHHHH
Confidence 35555666666666666543221 2233455677777666644333 346777788888888755
Q ss_pred HH
Q 029363 115 NS 116 (194)
Q Consensus 115 ~~ 116 (194)
.+
T Consensus 158 ~~ 159 (307)
T PRK02463 158 QY 159 (307)
T ss_pred hc
Confidence 43
No 17
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=93.20 E-value=6.4 Score=35.75 Aligned_cols=64 Identities=8% Similarity=0.151 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhh--h-hhhhHHHHHHHHHHHHHHHHhh
Q 029363 45 TLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLF--K-FKSGAVVALVLFVVFGLLNSLF 118 (194)
Q Consensus 45 klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~--k-~ksm~~~~l~~i~~f~l~~~~f 118 (194)
+-..+|.+++-++++.++ ... .+-++.++|.+++.++-+.. . +-|+++-+.+++++|..+++-.
T Consensus 66 ~~~~km~~lqPe~~~iq~-kyk---------~~~~~~~~e~~~Lykk~ginp~~gclp~liQ~Pif~alf~~l~~~~ 132 (329)
T PRK01315 66 KSQRNMQEIQPKMKKIQE-KYK---------GDRERMSQEMMKLYKETGTNPLSSCLPLLLQMPIFFALYRVLDSAA 132 (329)
T ss_pred HHHHHHHHccHHHHHHHH-HHH---------hHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666 321 01335567777755554433 3 6788888889999998887643
No 18
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=93.18 E-value=0.72 Score=32.92 Aligned_cols=62 Identities=23% Similarity=0.499 Sum_probs=38.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHh
Q 029363 38 YRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSL 117 (194)
Q Consensus 38 yr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k~ksm~~~~l~~i~~f~l~~~~ 117 (194)
.++++|++++++++++.+|+|-.-.| - .|..=+..+||++. -=.+++|+++..++..+++.
T Consensus 9 v~~~~~~~i~~rLd~iEeKvEf~~~E-------------i---~Qr~GkkiGRDiGI---lYG~v~Glii~~~~~~l~~~ 69 (70)
T PF04210_consen 9 VDPDDFNEIMKRLDEIEEKVEFTNAE-------------I---AQRAGKKIGRDIGI---LYGLVIGLIIFIIYIVLSSM 69 (70)
T ss_pred eCHHHHHHHHHHHHHHHHHHHhHHHH-------------H---HHHHhHHhhhHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 37888888888888887777653331 0 01111224555543 45778888887777777665
Q ss_pred h
Q 029363 118 F 118 (194)
Q Consensus 118 f 118 (194)
|
T Consensus 70 ~ 70 (70)
T PF04210_consen 70 F 70 (70)
T ss_pred C
Confidence 4
No 19
>PRK11546 zraP zinc resistance protein; Provisional
Probab=92.18 E-value=1.3 Score=35.72 Aligned_cols=79 Identities=9% Similarity=0.084 Sum_probs=46.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh-------------hccchhHHHHHHHHHHHHHHHHHhhhh----------CCCccccc
Q 029363 15 SLTVVGISFCTAIICESISWLL-------------IYRTNSYKTLKSSIDKASKKLETMKIE----------NPAKISTK 71 (194)
Q Consensus 15 ~l~I~~ia~~t~l~se~ls~~L-------------Vyr~e~y~klq~~~~~~~kkl~k~ke~----------~~~~~~~~ 71 (194)
.++++++|+++.+-+-.+.|.- =...|+..++++-.++.+.+...++++ -..++++|
T Consensus 8 ~~~~~ala~~~~~s~~a~A~~~~G~~~G~~~~~~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD 87 (143)
T PRK11546 8 ALVLMALSALAMGSGSAFAHHHWGGGHGMWQQNAAPLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPD 87 (143)
T ss_pred HHHHHHHHHHHHhhhHHHHhhccCCCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 3567778888777777776641 016677666655555544433333322 12223344
Q ss_pred hhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 72 KSKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 72 k~~~kkler~e~el~~~~~el~~~k 96 (194)
.+|+.++..|+.+++.+|.--+
T Consensus 88 ---~~kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 88 ---SSKINAVAKEMENLRQSLDELR 109 (143)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888887776544
No 20
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=91.21 E-value=1.6 Score=33.19 Aligned_cols=32 Identities=13% Similarity=0.273 Sum_probs=25.1
Q ss_pred HHHHHhhccch---hHHHHHHHHHHHHHHHHHhhh
Q 029363 31 SISWLLIYRTN---SYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 31 ~ls~~LVyr~e---~y~klq~~~~~~~kkl~k~ke 62 (194)
+++|.+++-.. .|.++++++++++++++++++
T Consensus 14 ~l~y~l~~g~~G~~~~~~l~~q~~~~~~e~~~l~~ 48 (105)
T PRK00888 14 WLQYSLWFGKNGILDYWRVNDQVAAQQQTNAKLKA 48 (105)
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666665454 688999999999999988887
No 21
>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]
Probab=91.11 E-value=1.5 Score=39.24 Aligned_cols=39 Identities=5% Similarity=0.077 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhhhhhhh---hhhhHHHHHHHHHHHHHHHHh
Q 029363 79 DRVETSLKESSRDLSLFK---FKSGAVVALVLFVVFGLLNSL 117 (194)
Q Consensus 79 er~e~el~~~~~el~~~k---~ksm~~~~l~~i~~f~l~~~~ 117 (194)
++.++|.+++-++-...- .-|+++.+.+++++++.+.+.
T Consensus 159 ~~~q~e~~~Lyk~~~vnPl~gclP~liQ~Pifialy~~l~~~ 200 (314)
T COG0706 159 QKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRST 200 (314)
T ss_pred HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 344557888777766555 558888888888888776655
No 22
>PRK03449 putative inner membrane protein translocase component YidC; Provisional
Probab=91.02 E-value=3.1 Score=37.35 Aligned_cols=63 Identities=6% Similarity=0.136 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhh--h-hhhhHHHHHHHHHHHHHHHHh
Q 029363 45 TLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLF--K-FKSGAVVALVLFVVFGLLNSL 117 (194)
Q Consensus 45 klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~--k-~ksm~~~~l~~i~~f~l~~~~ 117 (194)
+-.+++.+++=+++++++ +.. ...++.++|++++.+|-+.. + +-|+++-+.+++++|..+.+.
T Consensus 56 ks~~km~~lqP~l~~iq~-kyk---------~~~~~~~~e~~~Lyk~~gvnP~~gclP~liQlPi~~~ly~~ir~~ 121 (304)
T PRK03449 56 RTTRKMQELQPQIKALQK-KYG---------NDRQKMALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRSF 121 (304)
T ss_pred HHHHHHHHccHHHHHHHH-Hhh---------hhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555566666666666 321 11245667777766555433 3 678888888999999877764
No 23
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=90.82 E-value=1.1 Score=36.89 Aligned_cols=86 Identities=14% Similarity=0.174 Sum_probs=43.4
Q ss_pred hhhHHhHHHHHHHHH--HhhhhhhhhhhhhHHHHHHHHHHHHHHHHh----hcCccccccC-CcchHHHHHH--hcCCCC
Q 029363 73 SKTKKIDRVETSLKE--SSRDLSLFKFKSGAVVALVLFVVFGLLNSL----FEGKVVAKLP-FKPFGIVMKM--SHRGLQ 143 (194)
Q Consensus 73 ~~~kkler~e~el~~--~~~el~~~k~ksm~~~~l~~i~~f~l~~~~----f~g~~VakLP-F~pi~~~~~~--thrgL~ 143 (194)
+..+|++++.+|++. .++......+|- ++.+.|.++=.+++.. +...+|+-+| |..-.|.+++ ..+...
T Consensus 74 RlnRKi~kl~~ele~qs~n~~~q~~~~K~--vlSv~f~vl~~~~~~~~~~K~ss~pv~~~Ptf~~~~w~~~~l~~p~~~~ 151 (175)
T KOG4253|consen 74 RLNRKINKLDKELETQSKNKTAQAHLHKW--VLSVAFYVLKIMYGKTPVYKLSSSPVTLFPTFVSGVWSQGWLYVPLHAL 151 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhceeeeecCCceeeecchhccchhHHHHHHHHHHh
Confidence 567778877777765 333333333433 4444444443333322 2235777777 3222244422 222233
Q ss_pred CCCCCcchHHHHHHHHHHhhH
Q 029363 144 GDDATDCSMAFLYFLCSISIR 164 (194)
Q Consensus 144 G~d~tdcs~if~Y~Lcsm~~r 164 (194)
|. .|-..|-+-|.=.+.
T Consensus 152 gs----VsltiW~~a~~kvi~ 168 (175)
T KOG4253|consen 152 GS----VSLTIWVWALMKVIN 168 (175)
T ss_pred CC----cchhhhHHHHHHHHh
Confidence 44 667777777765544
No 24
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=90.81 E-value=2.1 Score=31.14 Aligned_cols=62 Identities=23% Similarity=0.455 Sum_probs=37.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHh
Q 029363 38 YRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSL 117 (194)
Q Consensus 38 yr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k~ksm~~~~l~~i~~f~l~~~~ 117 (194)
.++++|++++++++++.+|+|-.-.| - .|..=+..+||++- -=.+++|+++..+...++..
T Consensus 12 v~~~d~~~i~~rLD~iEeKVEftn~E-------------i---~Qr~GkkvGRDiGI---lYG~viGlli~~i~~~~~~~ 72 (77)
T PRK01026 12 VDPKDFKEIQKRLDEIEEKVEFTNAE-------------I---FQRIGKKVGRDIGI---LYGLVIGLLIVLVYIILSPI 72 (77)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHH-------------H---HHHHhHHhhhHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 37788998888888888887664331 1 11111225666654 35677777777666655554
Q ss_pred h
Q 029363 118 F 118 (194)
Q Consensus 118 f 118 (194)
|
T Consensus 73 ~ 73 (77)
T PRK01026 73 F 73 (77)
T ss_pred H
Confidence 4
No 25
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=90.68 E-value=0.93 Score=30.90 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 029363 42 SYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 42 ~y~klq~~~~~~~kkl~k~ke 62 (194)
.+-+++.+.++++++++++++
T Consensus 42 ~~~~~r~~~~~~~k~l~~le~ 62 (68)
T PF06305_consen 42 SRLRLRRRIRRLRKELKKLEK 62 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666665555554
No 26
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=90.57 E-value=1.9 Score=43.35 Aligned_cols=61 Identities=15% Similarity=0.130 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh---hhhhHHHHHHHHHHHHHHHHh
Q 029363 47 KSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK---FKSGAVVALVLFVVFGLLNSL 117 (194)
Q Consensus 47 q~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k---~ksm~~~~l~~i~~f~l~~~~ 117 (194)
.++|+++|-+++++++ +.. +.-+|.|+|+|++-++-+..- .-||++-+.+++++|..+.+-
T Consensus 602 maKMq~LQPemqeIQe-KYK---------dD~qK~QqEmMkLYKe~GVNPl~GCLPmLIQmPIFfALY~vL~~s 665 (795)
T PRK01001 602 MRRMQKLSPYIQEIQQ-KYK---------KEPKRAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLLKSS 665 (795)
T ss_pred HHHHHHhhHHHHHHHH-HhH---------hHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466667777777777 322 122556778888666655433 568888888888888777653
No 27
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=90.04 E-value=13 Score=33.76 Aligned_cols=128 Identities=13% Similarity=0.162 Sum_probs=79.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHh---h
Q 029363 14 DSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESS---R 90 (194)
Q Consensus 14 d~l~I~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~---~ 90 (194)
..+..+.+|++..+++.+.+++. ++=-++=-.+.-+..-+..++.+. --| +-||+||+-|.-. .
T Consensus 58 ~~~~f~~ia~~~v~~~v~~~ff~--shyiFrWR~Am~~yY~~~W~~~r~-IEG----------ASQRIQEDtmrfa~i~E 124 (315)
T PF05992_consen 58 QILNFLWIAMIYVVLAVLNSFFV--SHYIFRWRTAMNEYYMSHWPKLRH-IEG----------ASQRIQEDTMRFAKIME 124 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhHHHHHHHHHhcc-Ccc----------HHHHHHHHHHHHHHHHH
Confidence 34455556666555555443332 443333333344455566666655 222 3468888888833 3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhhcCccccccCCcchHHHHHHhcCCCCCCCCCcchHHHHHHHHHHhhHHHHHHH
Q 029363 91 DLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKF 170 (194)
Q Consensus 91 el~~~k~ksm~~~~l~~i~~f~l~~~~f~g~~VakLPF~pi~~~~~~thrgL~G~d~tdcs~if~Y~Lcsm~~r~~iqKl 170 (194)
+|+. ++-..+.|.+.|+|+. |--+..|..+|+- |+. ...++|+.++...+...+--+
T Consensus 125 ~Lgv-~~i~simtliaFlPiL-----~~lS~~V~~lp~~--------------g~i---~~~Lv~~ai~~s~~gt~~l~~ 181 (315)
T PF05992_consen 125 DLGV-SFIRSIMTLIAFLPIL-----WELSSHVSELPFF--------------GEI---PHSLVWAAIIWSLFGTILLAF 181 (315)
T ss_pred HHHH-HHHHHHHHHHHHHHHH-----HHHhccCCcCccc--------------CCC---chHHHHHHHHHHHHHHHHHHH
Confidence 3333 4667788888888888 4444556566642 222 456888899999999999889
Q ss_pred hCCCCCC
Q 029363 171 LGFSPPR 177 (194)
Q Consensus 171 LG~~~~~ 177 (194)
.|.+.|.
T Consensus 182 vGikLPg 188 (315)
T PF05992_consen 182 VGIKLPG 188 (315)
T ss_pred HhccCcc
Confidence 8988874
No 28
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.69 E-value=0.78 Score=40.56 Aligned_cols=85 Identities=13% Similarity=0.178 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhh-------
Q 029363 22 SFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSL------- 94 (194)
Q Consensus 22 a~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~------- 94 (194)
++.+.+..+.++-.+.-...+|..++++..+++++++.+..+.....+.-...++++++.+.+++.++.++.-
T Consensus 19 ~~~t~V~a~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 19 AFLTTVFAALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred hhcchhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666554445677888888888888777766632110111112344445544444444444322
Q ss_pred ------hhhhhhHHHHHH
Q 029363 95 ------FKFKSGAVVALV 106 (194)
Q Consensus 95 ------~k~ksm~~~~l~ 106 (194)
-+.|+|-..|=.
T Consensus 99 r~~~l~~raRAmq~nG~~ 116 (265)
T COG3883 99 RQELLKKRARAMQVNGTA 116 (265)
T ss_pred HHHHHHHHHHHHHHcCCh
Confidence 236777666544
No 29
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=89.46 E-value=2.7 Score=38.74 Aligned_cols=33 Identities=12% Similarity=0.199 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhhhhhhh---hhhhHHHHHHHHHHHHH
Q 029363 80 RVETSLKESSRDLSLFK---FKSGAVVALVLFVVFGL 113 (194)
Q Consensus 80 r~e~el~~~~~el~~~k---~ksm~~~~l~~i~~f~l 113 (194)
+.++|++++-+|-+ .- .-|+++-+.+++++|..
T Consensus 80 k~QqEmmkLYKE~G-NPlaGCLP~LIQmPIF~aLY~~ 115 (375)
T PRK02654 80 KQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFAT 115 (375)
T ss_pred HHHHHHHHHHHHcC-CChhhHHHHHHHHHHHHHHHHH
Confidence 45666666555555 22 55666667777777763
No 30
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=88.91 E-value=4.8 Score=28.21 Aligned_cols=21 Identities=5% Similarity=0.404 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 029363 42 SYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 42 ~y~klq~~~~~~~kkl~k~ke 62 (194)
+..++..++++.+++.++++.
T Consensus 7 ~l~~ie~~l~~~~~~i~~lE~ 27 (71)
T PF10779_consen 7 KLNRIETKLDNHEERIDKLEK 27 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 31
>PF14282 FlxA: FlxA-like protein
Probab=88.71 E-value=1.7 Score=32.92 Aligned_cols=54 Identities=9% Similarity=0.264 Sum_probs=41.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 40 TNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 40 ~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k 96 (194)
.+..++|++.++.+++++.++.+ . .+.+.+.+.++.+.++.++..+..+|....
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~-~--~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQ-D--SDLDAEQKQQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-c--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667899999999999999888 2 122355667888899999999888887544
No 32
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=88.55 E-value=0.66 Score=34.06 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhCCCccc
Q 029363 18 VVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKIS 69 (194)
Q Consensus 18 I~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~ 69 (194)
+..+|++++++...+-|.+||+.=+-.+.|.+++++-+|+.+-.| .+|.+|
T Consensus 7 ~~iialiv~~iiaIvvW~iv~ieYrk~~rqrkId~li~RIreraE-DSGnES 57 (81)
T PF00558_consen 7 LAIIALIVALIIAIVVWTIVYIEYRKIKRQRKIDRLIERIRERAE-DSGNES 57 (81)
T ss_dssp -HHHHHHHHHHHHHHHHHHH------------CHHHHHHHHCTTT-CCHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcccc-cCCCCC
Confidence 334556666666788899988764444556777777777777666 344344
No 33
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=87.71 E-value=4.9 Score=28.71 Aligned_cols=59 Identities=24% Similarity=0.459 Sum_probs=34.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 029363 39 RTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNS 116 (194)
Q Consensus 39 r~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k~ksm~~~~l~~i~~f~l~~~ 116 (194)
++.+|++++++++++.+|+|-.-. |-.|..=+..+||++- -=.+++|+++..++..+..
T Consensus 10 ~~~d~~~i~~rLd~iEeKVEf~~~----------------E~~Qr~Gkk~GRDiGI---lYG~viGlli~~~~~~l~~ 68 (70)
T TIGR01149 10 EPDEFNEVMKRLDEIEEKVEFVNG----------------EVAQRIGKKVGRDIGI---LYGLVIGLILFLIYILLSS 68 (70)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHhHHhhhHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 677888888888877777765332 0111111235666654 3566777766666654443
No 34
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=87.36 E-value=2.5 Score=40.11 Aligned_cols=74 Identities=23% Similarity=0.378 Sum_probs=43.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhccchhHH---------------HHHHHHHHHHHHHHHhhhhC--------------
Q 029363 14 DSLTVVGISFCTAIICESISWLLIYRTNSYK---------------TLKSSIDKASKKLETMKIEN-------------- 64 (194)
Q Consensus 14 d~l~I~~ia~~t~l~se~ls~~LVyr~e~y~---------------klq~~~~~~~kkl~k~ke~~-------------- 64 (194)
|.++++.+-+.+|. -|+- |++.++. +...+++++||+|++++++.
T Consensus 216 D~iLv~lili~v~g-----cw~a-y~Qnk~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl 289 (575)
T KOG4403|consen 216 DFILVVLILIGVGG-----CWFA-YRQNKKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKL 289 (575)
T ss_pred hHHHHHHHHHHhhh-----hhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHH
Confidence 66665555444443 3555 6665553 23344567899999998850
Q ss_pred ----------CCccccchhhhHHhHHHHHHHHHHhhhhhhh
Q 029363 65 ----------PAKISTKKSKTKKIDRVETSLKESSRDLSLF 95 (194)
Q Consensus 65 ----------~~~~~~~k~~~kkler~e~el~~~~~el~~~ 95 (194)
.|.++ ... .|.+|+++.+|.+..++|-..
T Consensus 290 ~ea~rl~elreg~e~-e~~-rkelE~lR~~L~kAEkele~n 328 (575)
T KOG4403|consen 290 DEAPRLSELREGVEN-ETS-RKELEQLRVALEKAEKELEAN 328 (575)
T ss_pred hhhhhhhhhhcchhH-HHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 01111 111 257888888888888877554
No 35
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=87.07 E-value=3.4 Score=28.04 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=17.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHh
Q 029363 39 RTNSYKTLKSSIDKASKKLETM 60 (194)
Q Consensus 39 r~e~y~klq~~~~~~~kkl~k~ 60 (194)
.+-+.++++++++++++++++.
T Consensus 46 ~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3446789999999999998875
No 36
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=86.00 E-value=6.1 Score=29.91 Aligned_cols=66 Identities=11% Similarity=0.246 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhh
Q 029363 24 CTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLF 95 (194)
Q Consensus 24 ~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~ 95 (194)
+.+++--.++.-++ .++.+.++.+++++...|+.+.+. +-..- ++ .+.+.+++.++.+++-++...
T Consensus 19 ~~~~~~~~l~~~~a-~~~~~~~l~~~~~~~~~Rl~~lE~-~l~~L-Pt---~~dv~~L~l~l~el~G~~~~l 84 (106)
T PF10805_consen 19 AGGIFWLWLRRTYA-KREDIEKLEERLDEHDRRLQALET-KLEHL-PT---RDDVHDLQLELAELRGELKEL 84 (106)
T ss_pred HHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHHHHHHHH-HHHhC-CC---HHHHHHHHHHHHHHHhHHHHH
Confidence 33444344555554 678888888888888888888777 32211 11 345566666666655555443
No 37
>PRK11020 hypothetical protein; Provisional
Probab=85.63 E-value=3.3 Score=32.29 Aligned_cols=47 Identities=19% Similarity=0.284 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 41 NSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k 96 (194)
...++|.++++..+.++..++. +++ ...+.+.+.|...++.++...|
T Consensus 5 ~Eiq~L~drLD~~~~Klaaa~~-rgd--------~~~i~qf~~E~~~l~k~I~~lk 51 (118)
T PRK11020 5 NEIKRLSDRLDAIRHKLAAASL-RGD--------AEKYAQFEKEKATLEAEIARLK 51 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-cCC--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888888888888 877 6677777777777777777766
No 38
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=85.54 E-value=2.6 Score=32.70 Aligned_cols=45 Identities=16% Similarity=0.286 Sum_probs=24.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhh
Q 029363 39 RTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDL 92 (194)
Q Consensus 39 r~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el 92 (194)
+..+..+.+.++.+-+.+|++++. .|+ .+|+.+.|..|.+.+.+|
T Consensus 68 ~q~ki~~~~~kV~ere~eL~eA~~-~G~--------~~KI~K~~~KL~ea~~eL 112 (115)
T PF06476_consen 68 RQQKIAEKQQKVAEREAELKEAQA-KGD--------SDKIAKRQKKLAEAKAEL 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCC--------HHHHHHHHHHHHHHHHHH
Confidence 344555555666666667777777 555 344444444444444443
No 39
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=85.25 E-value=2.8 Score=34.21 Aligned_cols=53 Identities=11% Similarity=0.167 Sum_probs=38.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 39 RTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 39 r~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k 96 (194)
-.+.|++|+++++.+.+++..|.+ -|+ -|- ++++...++.++.++.+.|..-+
T Consensus 32 T~~G~~~L~~El~~L~~~i~~Ar~-~GD-lsE---ak~~~~~~e~rI~~L~~~L~~A~ 84 (160)
T PRK06342 32 TEAGLKALEDQLAQARAAYEAAQA-IED-VNE---RRRQMARPLRDLRYLAARRRTAQ 84 (160)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-CCC-hhH---HHHHHHHHHHHHHHHHHHHccCE
Confidence 678999999999999999999988 444 221 34455556667777777776555
No 40
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=84.68 E-value=7.8 Score=27.14 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 44 KTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 44 ~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k 96 (194)
+.+++++.++..++++..+ +.+ +-+++.++.+.++++++.++...+
T Consensus 2 ~~i~e~l~~ie~~l~~~~~-~i~------~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEE-RID------KLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888666 322 234555566666677777776655
No 41
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=80.93 E-value=2.7 Score=34.12 Aligned_cols=68 Identities=16% Similarity=0.192 Sum_probs=34.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhh-CCCccc-cch---hhhHHhHHHHHHHHHHh--hhhhhhhhhhhHHHHHH
Q 029363 39 RTNSYKTLKSSIDKASKKLETMKIE-NPAKIS-TKK---SKTKKIDRVETSLKESS--RDLSLFKFKSGAVVALV 106 (194)
Q Consensus 39 r~e~y~klq~~~~~~~kkl~k~ke~-~~~~~~-~~k---~~~kkler~e~el~~~~--~el~~~k~ksm~~~~l~ 106 (194)
..++++++++|++++.+|+...-.+ +.++-+ .++ |.++++|+.++++...+ -+....+.+-.+.+++.
T Consensus 38 ~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (161)
T PF04420_consen 38 SSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWVLTTLPF 112 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH---------
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999988873221 111111 222 34556666666666632 23444444433333333
No 42
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=80.59 E-value=13 Score=30.50 Aligned_cols=24 Identities=13% Similarity=0.469 Sum_probs=15.3
Q ss_pred hhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 73 SKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 73 ~~~kkler~e~el~~~~~el~~~k 96 (194)
+.+++++++++|+.+..+|+-..|
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~Lk 181 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALK 181 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777666665444
No 43
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=80.39 E-value=13 Score=26.72 Aligned_cols=26 Identities=8% Similarity=0.267 Sum_probs=14.5
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHHHH
Q 029363 88 SSRDLSLFKFKSGAVVALVLFVVFGL 113 (194)
Q Consensus 88 ~~~el~~~k~ksm~~~~l~~i~~f~l 113 (194)
+++.+-..++|..++++++.++++.+
T Consensus 57 l~r~~~~~~~k~~~i~~~iv~~~~~~ 82 (89)
T PF00957_consen 57 LKRKMWWRNYKLYIIIIIIVIIIILI 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHhhhhhhhhH
Confidence 34444444466666666666666543
No 44
>PF08514 STAG: STAG domain ; InterPro: IPR013721 STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes. The STAG domain is present in Schizosaccharomyces pombe (Fission yeast) mitotic cohesin Psc3, and the meiosis specific cohesin Rec11. Many organisms express a meiosis-specific STAG protein, for example, mice and humans have a meiosis specific variant called STAG3, although budding yeast does not have a meiosis specific version [].
Probab=80.28 E-value=6.9 Score=30.19 Aligned_cols=38 Identities=24% Similarity=0.461 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHH
Q 029363 43 YKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKE 87 (194)
Q Consensus 43 y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~ 87 (194)
...+.++++..+++++..+. ... ++..++|.++..++|
T Consensus 81 ~~~l~~~~~~~~rQl~aE~~-k~~------~~~~r~~~l~~~i~~ 118 (118)
T PF08514_consen 81 AKSLSEELEKTQRQLEAEKK-KKR------KNKSRLEELEQKIKE 118 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ccc------ccHHHHHHHHHHhcC
Confidence 34556677888888877766 322 223377777776653
No 45
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=79.70 E-value=3.4 Score=39.50 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhh
Q 029363 42 SYKTLKSSIDKASKKLETMKIE 63 (194)
Q Consensus 42 ~y~klq~~~~~~~kkl~k~ke~ 63 (194)
+...+| +++++++|++++|++
T Consensus 26 ~~~~~q-kie~L~kql~~Lk~q 46 (489)
T PF11853_consen 26 DIDLLQ-KIEALKKQLEELKAQ 46 (489)
T ss_pred hhHHHH-HHHHHHHHHHHHHHh
Confidence 444555 888888888888884
No 46
>PRK11677 hypothetical protein; Provisional
Probab=77.81 E-value=17 Score=28.91 Aligned_cols=73 Identities=14% Similarity=0.228 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhh
Q 029363 19 VGISFCTAIICESISWLLIYRT-NSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSL 94 (194)
Q Consensus 19 ~~ia~~t~l~se~ls~~LVyr~-e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~ 94 (194)
.+++++.|++.-++--.+..+. .+-+++++++++.+.+++.-|.+..+=.+ .-.+-++++.+...++-+-|+.
T Consensus 6 a~i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~YkqeV~~HFa---~TA~Ll~~L~~~Y~~Ly~HlA~ 79 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYRQELVSHFA---RSAELLDTMAKDYRQLYQHMAK 79 (134)
T ss_pred HHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444333333333333 24456777777777777776663210000 1134566666677666666644
No 47
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=77.40 E-value=23 Score=25.41 Aligned_cols=61 Identities=21% Similarity=0.435 Sum_probs=36.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHh
Q 029363 38 YRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSL 117 (194)
Q Consensus 38 yr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k~ksm~~~~l~~i~~f~l~~~~ 117 (194)
.+.++|.+++++++++.+|+|---. +--||.- +..+||++. -=.+++|+++..+..++...
T Consensus 12 v~~~dfne~~kRLdeieekvef~~~-------------Ev~Qr~G---kkiGRDIGI---LYGlVIGlil~~i~~~l~~~ 72 (75)
T COG4064 12 VDPDDFNEIHKRLDEIEEKVEFVNG-------------EVYQRIG---KKIGRDIGI---LYGLVIGLILCMIYILLGVA 72 (75)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhhHH-------------HHHHHHH---HHhcchHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4888899999888888888765332 1111111 225556543 35677777766666555443
No 48
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=77.18 E-value=17 Score=31.43 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=16.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhccc
Q 029363 12 YSDSLTVVGISFCTAIICESISWLLIYRT 40 (194)
Q Consensus 12 ~~d~l~I~~ia~~t~l~se~ls~~LVyr~ 40 (194)
.-|..+++.-.+...++.-++.++| |++
T Consensus 2 ~id~~t~~~qiInFlILv~lL~~fl-~kP 29 (250)
T PRK14474 2 LIDWFTVVAQIINFLILVYLLRRFL-YKP 29 (250)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3455555555555555556777777 654
No 49
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=77.05 E-value=22 Score=28.18 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=23.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 13 SDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 13 ~d~l~I~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
-|..+++...+...++.-++.+++ |++ --+-+.+|-+.+.+.++++++
T Consensus 3 ~~~~~~~~~~inF~il~~iL~~f~-~kp-i~~~l~~R~~~I~~~l~~A~~ 50 (159)
T PRK13461 3 INIPTIIATIINFIILLLILKHFF-FDK-IKAVIDSRQSEIDNKIEKADE 50 (159)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHh-HHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 343344444444444445677777 543 444455555555555544433
No 50
>PRK09609 hypothetical protein; Provisional
Probab=75.28 E-value=59 Score=29.54 Aligned_cols=38 Identities=8% Similarity=-0.046 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 24 CTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 24 ~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
+.+++-..+.+.+ .++-+-+++.+.++..+++.+.+-+
T Consensus 96 f~~~~fk~~~~~f-~~~~~~~~~~~~i~~~~~~~~~~~~ 133 (312)
T PRK09609 96 VGWFFFKFGKKFF-GKESRIKRYDNKIFKQKEQYDFALE 133 (312)
T ss_pred HHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444445555 3555666777777666666555444
No 51
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=74.84 E-value=22 Score=27.67 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhh
Q 029363 43 YKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLF 95 (194)
Q Consensus 43 y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~ 95 (194)
-.++++++++.+.+++.-|.+..+=.+ .-.+-+.++.++..++.+.|+..
T Consensus 27 q~~l~~eL~~~k~el~~yk~~V~~HF~---~ta~Ll~~l~~~Y~~l~~Hla~~ 76 (128)
T PF06295_consen 27 QAKLEQELEQAKQELEQYKQEVNDHFA---QTAELLDNLTQDYQKLYQHLAKG 76 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888777663210000 11445666667777666666554
No 52
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=74.31 E-value=27 Score=24.55 Aligned_cols=21 Identities=10% Similarity=0.314 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 029363 42 SYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 42 ~y~klq~~~~~~~kkl~k~ke 62 (194)
.+..++.++.+++++++++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~ 45 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQK 45 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 53
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=74.07 E-value=11 Score=25.97 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 029363 41 NSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke 62 (194)
-.+.+++.++.+++++++++++
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~ 38 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKK 38 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666666666666555
No 54
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=73.44 E-value=5.7 Score=39.01 Aligned_cols=54 Identities=22% Similarity=0.299 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhC----------CCccc--cchhhhHHhHHHHHHHHHHhhhhhh
Q 029363 41 NSYKTLKSSIDKASKKLETMKIEN----------PAKIS--TKKSKTKKIDRVETSLKESSRDLSL 94 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke~~----------~~~~~--~~k~~~kkler~e~el~~~~~el~~ 94 (194)
..+++|+++++++++++.+++.+- .++.. .-.+..|+++|++++++.+..|+.-
T Consensus 636 ~smekl~~kI~~~keql~e~~~~l~~ak~~~~~~~~~~~~k~~Ek~~k~~~~l~eqi~kl~~q~~d 701 (759)
T KOG0981|consen 636 KSMEKLAEKIKAKKEQLKEAEAELKSAKADEKKQEGSKEKKEVEKKEKKLERLEEQLKKLEIQMTD 701 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHHHHhhhccc
Confidence 357888888888888777765430 11011 1236788899999999998877754
No 55
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=73.23 E-value=25 Score=28.72 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=10.8
Q ss_pred cccccchhhHHHHHHHHHHH
Q 029363 9 SLKYSDSLTVVGISFCTAII 28 (194)
Q Consensus 9 ~~~~~d~l~I~~ia~~t~l~ 28 (194)
.++..|++.++.+.++.+++
T Consensus 24 ~~~~t~~~~~inflil~~iL 43 (184)
T PRK13455 24 SLSNTDFVVTLAFLLFIGIL 43 (184)
T ss_pred CCcchHHHHHHHHHHHHHHH
Confidence 35566666555555554444
No 56
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=71.14 E-value=29 Score=24.35 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhh
Q 029363 41 NSYKTLKSSIDKASKKLETMKIE 63 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke~ 63 (194)
....+++.++++++.+-++++.|
T Consensus 31 ~~~~~~~~~~~~l~~en~~L~~e 53 (85)
T TIGR02209 31 NELQKLQLEIDKLQKEWRDLQLE 53 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35568888899999988888884
No 57
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=70.91 E-value=25 Score=25.03 Aligned_cols=55 Identities=9% Similarity=0.231 Sum_probs=35.1
Q ss_pred cchhHHHHHHHHHHHHH--------HHHHhhhhCCCccccch--hhhHHhHHHHHHHHHHhhhhhh
Q 029363 39 RTNSYKTLKSSIDKASK--------KLETMKIENPAKISTKK--SKTKKIDRVETSLKESSRDLSL 94 (194)
Q Consensus 39 r~e~y~klq~~~~~~~k--------kl~k~ke~~~~~~~~~k--~~~kkler~e~el~~~~~el~~ 94 (194)
-.+.|++|+++++.+.. ++.+|.+ -||-..+.. ..+++...++.++.++.+.|..
T Consensus 7 T~~g~~~L~~EL~~L~~~~rpe~~~~i~~Ar~-~GDlsENaeY~aAke~q~~le~rI~~Le~~l~~ 71 (74)
T PF03449_consen 7 TPEGYEKLQAELEHLKNVERPEIAEEIAEARE-QGDLSENAEYHAAKERQAFLEARIRELEERLAR 71 (74)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-cCCcccchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56889999999988654 3344555 333111111 4566677788888888777754
No 58
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=70.78 E-value=33 Score=25.96 Aligned_cols=45 Identities=7% Similarity=0.048 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHHHH-------HHHhhccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 16 LTVVGISFCTAIICESI-------SWLLIYRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 16 l~I~~ia~~t~l~se~l-------s~~LVyr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
++++++++++.+...++ +|.- -..+...++++.++++.+-+++++
T Consensus 4 ~~~vll~ll~~l~y~l~~g~~G~~~~~~--l~~q~~~~~~e~~~l~~~n~~L~~ 55 (105)
T PRK00888 4 LTLLLLALLVWLQYSLWFGKNGILDYWR--VNDQVAAQQQTNAKLKARNDQLFA 55 (105)
T ss_pred HHHHHHHHHHHHHHHHhccCCcHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555443 4444 345677788888888887777777
No 59
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=70.44 E-value=35 Score=26.25 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=15.6
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhh
Q 029363 27 IICESISWLLIYRTNSYKTLKSSIDKASKKLETMK 61 (194)
Q Consensus 27 l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~k 61 (194)
++.-++.++| |++ --+-+.+|-+.++..+++++
T Consensus 17 il~~ll~~~l-~~p-i~~~l~~R~~~I~~~l~~Ae 49 (140)
T PRK07353 17 LLTFILNALF-YKP-VGKVVEEREDYIRTNRAEAK 49 (140)
T ss_pred HHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4444777777 554 33333444444444444333
No 60
>PF10732 DUF2524: Protein of unknown function (DUF2524); InterPro: IPR019668 This entry represents proteins with unknown function, and appear to be restricted to the Bacillaceae.
Probab=70.39 E-value=19 Score=26.59 Aligned_cols=49 Identities=16% Similarity=0.411 Sum_probs=40.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhh
Q 029363 38 YRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDL 92 (194)
Q Consensus 38 yr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el 92 (194)
|+...|.+-+.+++....+++++.. + + ...+.+.|.|.+..+..++.+|
T Consensus 34 ynd~eYt~Aq~~LE~a~neL~~l~~-s-A----N~qQREqL~R~rlQlqqLQN~M 82 (84)
T PF10732_consen 34 YNDEEYTEAQQMLEEAYNELEKLAH-S-A----NPQQREQLHRMRLQLQQLQNNM 82 (84)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-h-C----CHHHHHHHHHHHHHHHHHHhhh
Confidence 7888999999999999999999888 3 2 3456788888888888877665
No 61
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=70.26 E-value=14 Score=30.79 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=15.9
Q ss_pred hhhHHhHHHHHHHHHHhhhhhh
Q 029363 73 SKTKKIDRVETSLKESSRDLSL 94 (194)
Q Consensus 73 ~~~kkler~e~el~~~~~el~~ 94 (194)
+..++++.+++++.+++.++..
T Consensus 107 ~~l~~l~~l~~~~~~l~~el~~ 128 (188)
T PF03962_consen 107 ELLEELEELKKELKELKKELEK 128 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777788777777773
No 62
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=70.18 E-value=6.3 Score=27.21 Aligned_cols=37 Identities=11% Similarity=0.011 Sum_probs=24.4
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 029363 10 LKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKS 48 (194)
Q Consensus 10 ~~~~d~l~I~~ia~~t~l~se~ls~~LVyr~e~y~klq~ 48 (194)
++.+=++.-++.++..+++...+.=.| |.|+|++.|+
T Consensus 5 ~r~~~~~ggfVg~iG~a~Ypi~~~Pmm--~~eeYk~~Q~ 41 (58)
T PF15061_consen 5 WRYALFVGGFVGLIGAALYPIYFRPMM--NPEEYKKEQK 41 (58)
T ss_pred ccchhhHHHHHHHHHHHHhhhhccccc--ChHHHHHHHH
Confidence 344444444555666677777776665 9999998774
No 63
>PF03268 DUF267: Caenorhabditis protein of unknown function, DUF267; InterPro: IPR004950 This family of proteins, from Caenorhabditis species, have not been characterised though a number are annotated as 'serpentine receptor, class r' proteins.
Probab=70.10 E-value=80 Score=29.20 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=28.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhh
Q 029363 14 DSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIE 63 (194)
Q Consensus 14 d~l~I~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~ 63 (194)
|..+-+.++.++.+. +.-|.|| -..+..|++-..+|||+++++
T Consensus 156 ~~~i~~l~~~is~i~--L~~y~lv-----~~al~REi~yFN~ELe~A~ke 198 (353)
T PF03268_consen 156 DPFINFLCWYISFIC--LAIYFLV-----NSALNREIEYFNEELEKASKE 198 (353)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHH-----HHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444443 5667775 457888999999999999993
No 64
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=69.94 E-value=20 Score=24.60 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=19.2
Q ss_pred chhHHHHHHHHHHHHHHHHHhhh
Q 029363 40 TNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 40 ~e~y~klq~~~~~~~kkl~k~ke 62 (194)
...+.++++++++++++.+++++
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ 45 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKE 45 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44688999999999988888887
No 65
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.47 E-value=24 Score=32.46 Aligned_cols=63 Identities=14% Similarity=0.291 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 24 CTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 24 ~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k 96 (194)
+..++.+-+.|. +.|++.+++++++.+..+=|++++ | .++-+..+|++|.+.-.++.+....+
T Consensus 211 visa~~eklR~r---~eeeme~~~aeq~slkRt~EeL~~---G----~~kL~~~~etLEqq~~~L~~niDIL~ 273 (365)
T KOG2391|consen 211 VISAVREKLRRR---REEEMERLQAEQESLKRTEEELNI---G----KQKLVAMKETLEQQLQSLQKNIDILK 273 (365)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHh---h----HHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 344445666665 345566666555555555555555 2 22333445566666666666655444
No 66
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=69.32 E-value=17 Score=26.94 Aligned_cols=38 Identities=21% Similarity=0.298 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 21 ISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 21 ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
++.++|++.-++-|+. |+ -++++++.++++++-+-.+.
T Consensus 7 v~~~~~v~~~i~~y~~-~k---~~ka~~~~~kL~~en~qlk~ 44 (87)
T PF10883_consen 7 VGGVGAVVALILAYLW-WK---VKKAKKQNAKLQKENEQLKT 44 (87)
T ss_pred HHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHH
Confidence 4455566666677777 34 45555555555555444443
No 67
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=68.33 E-value=16 Score=29.59 Aligned_cols=57 Identities=12% Similarity=0.169 Sum_probs=37.1
Q ss_pred cchhHHHHHHHHHHHHH-H-------HHHhhhhCCC-ccccc-hhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 39 RTNSYKTLKSSIDKASK-K-------LETMKIENPA-KISTK-KSKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 39 r~e~y~klq~~~~~~~k-k-------l~k~ke~~~~-~~~~~-k~~~kkler~e~el~~~~~el~~~k 96 (194)
-.+.|++|+++++.++. + +.++.+ .|+ +++.+ ...+++..++|.++.++.+.|..-+
T Consensus 8 T~~g~~~L~~EL~~L~~~~r~e~~~~i~~Ar~-~GDl~ENaeY~aAk~~~~~~e~rI~~L~~~L~~A~ 74 (157)
T PRK01885 8 TREGYARLKQELDYLWREERPEVTQKVSWAAS-LGDRSENADYIYGKKRLREIDRRVRFLTKRLENLK 74 (157)
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-cCCcchhhcHHHHHHHHHHHHHHHHHHHHHHccCE
Confidence 56899999999999855 4 455554 332 12211 1345666777888888888876655
No 68
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=67.46 E-value=38 Score=27.38 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcc
Q 029363 16 LTVVGISFCTAIICESISWLLIYR 39 (194)
Q Consensus 16 l~I~~ia~~t~l~se~ls~~LVyr 39 (194)
+.+.++|+.+.+++-++..+..++
T Consensus 41 lg~~~lAlg~vL~~~g~~~~~~~~ 64 (191)
T PF04156_consen 41 LGIALLALGVVLLSLGLLCLLSKR 64 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344555666677777776666433
No 69
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=67.23 E-value=31 Score=26.01 Aligned_cols=55 Identities=20% Similarity=0.350 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHH--hhhhhhhh
Q 029363 24 CTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKES--SRDLSLFK 96 (194)
Q Consensus 24 ~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~--~~el~~~k 96 (194)
+.++++.++.|.+ ++ .|-+ +++++.+.+++++. +.+++++|.++..+ .+|+...+
T Consensus 15 ~~~~~~~~~~~~l--~~-~~a~-~~~~~~l~~~~~~~--------------~~Rl~~lE~~l~~LPt~~dv~~L~ 71 (106)
T PF10805_consen 15 VFGIAGGIFWLWL--RR-TYAK-REDIEKLEERLDEH--------------DRRLQALETKLEHLPTRDDVHDLQ 71 (106)
T ss_pred HHHHHHHHHHHHH--HH-hhcc-HHHHHHHHHHHHHH--------------HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3344545555555 44 4544 77888887777552 56888999999885 77776554
No 70
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=66.95 E-value=68 Score=26.71 Aligned_cols=17 Identities=29% Similarity=0.149 Sum_probs=9.5
Q ss_pred ccchhhHHHHHHHHHHH
Q 029363 12 YSDSLTVVGISFCTAII 28 (194)
Q Consensus 12 ~~d~l~I~~ia~~t~l~ 28 (194)
..|.+++.++..+.+.+
T Consensus 44 ~~~~~I~f~i~t~~say 60 (170)
T PF07074_consen 44 LYDSLIVFVIVTLVSAY 60 (170)
T ss_pred cchhhHHHHHHHHHHHH
Confidence 34666666655555544
No 71
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=66.58 E-value=43 Score=28.65 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=13.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhcc
Q 029363 13 SDSLTVVGISFCTAIICESISWLLIYR 39 (194)
Q Consensus 13 ~d~l~I~~ia~~t~l~se~ls~~LVyr 39 (194)
-|..+++.-.+...++.-++.+++ |+
T Consensus 3 id~~t~~~qiInFlil~~lL~kfl-~k 28 (246)
T TIGR03321 3 IDWFTVIAQLINFLILVWLLKRFL-YR 28 (246)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHh-HH
Confidence 344444444444444445666666 44
No 72
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=66.27 E-value=41 Score=24.40 Aligned_cols=18 Identities=11% Similarity=0.274 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 029363 45 TLKSSIDKASKKLETMKI 62 (194)
Q Consensus 45 klq~~~~~~~kkl~k~ke 62 (194)
.+..++++++++.+++++
T Consensus 39 ~~~~~l~~l~~~~~~l~~ 56 (97)
T PF04999_consen 39 QLFYELQQLEKEIDQLQE 56 (97)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444443
No 73
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=65.72 E-value=51 Score=30.56 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=11.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhc
Q 029363 97 FKSGAVVALVLFVVFGLLNSLFE 119 (194)
Q Consensus 97 ~ksm~~~~l~~i~~f~l~~~~f~ 119 (194)
..+.+.-.++.++=++.+..+|-
T Consensus 92 ~GNPlaGCLP~LIQmPIF~aLY~ 114 (375)
T PRK02654 92 FGNPLAGCLPLLVQMPILFALFA 114 (375)
T ss_pred cCCChhhHHHHHHHHHHHHHHHH
Confidence 43555555555544554444444
No 74
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=65.56 E-value=47 Score=27.96 Aligned_cols=14 Identities=7% Similarity=0.102 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHh
Q 029363 23 FCTAIICESISWLL 36 (194)
Q Consensus 23 ~~t~l~se~ls~~L 36 (194)
+..+++.-++++++
T Consensus 61 I~FliL~~lL~k~~ 74 (204)
T PRK09174 61 ITFGLFYLFMSRVI 74 (204)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444777776
No 75
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=64.53 E-value=90 Score=28.78 Aligned_cols=19 Identities=5% Similarity=0.003 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 029363 44 KTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 44 ~klq~~~~~~~kkl~k~ke 62 (194)
.+-+++|+++|-|+++.++
T Consensus 156 ~~s~~km~~lqPel~~Iq~ 174 (357)
T PRK02201 156 TFNQEKQEELQGKKAKIDA 174 (357)
T ss_pred HHHHHHHHHhhHHHHHHHH
Confidence 4667788889999999888
No 76
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=64.31 E-value=60 Score=26.26 Aligned_cols=41 Identities=2% Similarity=0.091 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHh
Q 029363 18 VVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETM 60 (194)
Q Consensus 18 I~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ 60 (194)
++...+.-.++.-++.+++ |++ -.+-+.+|-+.+.+.++++
T Consensus 21 ~~~~iInFliL~~lL~~~l-~~p-i~~~l~~R~~~I~~~l~~A 61 (173)
T PRK13453 21 VIVTVLTFIVLLALLKKFA-WGP-LKDVMDKRERDINRDIDDA 61 (173)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHH
Confidence 3333333334444667766 432 3344444444444444443
No 77
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=63.73 E-value=58 Score=25.89 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 23 FCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 23 ~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
+...++.-++.+++ |++ --+-+.+|-+.+++.++++++
T Consensus 16 i~Flil~~ll~~~l-~~p-i~~~l~~R~~~I~~~l~~A~~ 53 (164)
T PRK14471 16 ILFLILLLLLAKFA-WKP-ILGAVKEREDSIKNALASAEE 53 (164)
T ss_pred HHHHHHHHHHHHHh-HHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 33333444677777 654 445555555555555555443
No 78
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=63.53 E-value=53 Score=26.08 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=13.4
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHHHHh
Q 029363 30 ESISWLLIYRTNSYKTLKSSIDKASKKLETM 60 (194)
Q Consensus 30 e~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ 60 (194)
-++.+++ |++ -.+-+.+|-+++.+.++++
T Consensus 37 ~lL~k~l-~~P-i~~~l~~R~~~I~~~l~~A 65 (156)
T CHL00118 37 VLLNIIL-YKP-LLKVLDERKEYIRKNLTKA 65 (156)
T ss_pred HHHHHHH-HHH-HHHHHHHHHHHHHHHHHHH
Confidence 4666655 554 3333444444444444433
No 79
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=63.47 E-value=61 Score=25.77 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Q 029363 24 CTAIICESISWLLIYRTNSYKTLKSSIDKASKKLET 59 (194)
Q Consensus 24 ~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k 59 (194)
...++.-++.+++ |++ --+-+.+|-+.+.+.+++
T Consensus 17 nflil~~lL~~fl-~kp-i~~~l~~R~~~I~~~l~~ 50 (164)
T PRK14473 17 NFLLLIFLLRTFL-YRP-VLNLLNERTRRIEESLRD 50 (164)
T ss_pred HHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHH
Confidence 3333334667776 443 333344444444444333
No 80
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=62.56 E-value=61 Score=23.97 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=9.5
Q ss_pred hhhhHHHHHHHHHHH
Q 029363 97 FKSGAVVALVLFVVF 111 (194)
Q Consensus 97 ~ksm~~~~l~~i~~f 111 (194)
-|+|.+-+.+|++.|
T Consensus 67 rK~~~ls~~l~~v~~ 81 (85)
T PF15188_consen 67 RKSMLLSVALFFVCF 81 (85)
T ss_pred hhhHHHHHHHHHHHH
Confidence 566666666666655
No 81
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=62.53 E-value=69 Score=25.78 Aligned_cols=43 Identities=12% Similarity=0.099 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 18 VVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 18 I~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
++..++.-+++--++.+++ | ++--+-+.+|-+++++.+++++.
T Consensus 9 ~~~~~i~F~ill~ll~~~~-~-~pi~~~l~~R~~~I~~~l~~A~~ 51 (161)
T COG0711 9 ILWQLIAFVILLWLLKKFV-W-KPILKALDERQAKIADDLAEAER 51 (161)
T ss_pred HHHHHHHHHHHHHHHHHHh-H-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445666666 4 55556666666666666655554
No 82
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=62.43 E-value=19 Score=27.68 Aligned_cols=10 Identities=0% Similarity=0.481 Sum_probs=4.8
Q ss_pred HHhHHHHHHH
Q 029363 76 KKIDRVETSL 85 (194)
Q Consensus 76 kkler~e~el 85 (194)
+.+|++++|+
T Consensus 93 eE~~~L~~ei 102 (104)
T PF11460_consen 93 EELEALQAEI 102 (104)
T ss_pred HHHHHHHHHh
Confidence 3445555544
No 83
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=62.35 E-value=26 Score=27.84 Aligned_cols=57 Identities=11% Similarity=0.099 Sum_probs=37.7
Q ss_pred cchhHHHHHHHHHHHHHH--------HHHhhhhCCC-cccc-chhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 39 RTNSYKTLKSSIDKASKK--------LETMKIENPA-KIST-KKSKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 39 r~e~y~klq~~~~~~~kk--------l~k~ke~~~~-~~~~-~k~~~kkler~e~el~~~~~el~~~k 96 (194)
-.+.|++|+++++.+... +.++.+ .++ +++. -+..+++...++..+.++.++|...+
T Consensus 3 T~~g~~~L~~el~~L~~~~r~~~~~~~~~a~~-~gDl~Ena~y~aak~~~~~~e~ri~~L~~~L~~a~ 69 (151)
T TIGR01462 3 TQEGYEKLKEELEYLKTVKRPEISEEIAEARE-HGDLSENAEYHAAKEEQGFNEGRIAELEDLLANAQ 69 (151)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-CCChhhccchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 357899999999998752 555555 222 2222 23455666677888888888887766
No 84
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.83 E-value=32 Score=31.04 Aligned_cols=15 Identities=33% Similarity=0.102 Sum_probs=9.7
Q ss_pred hcCCCCCCCCCcchH
Q 029363 138 SHRGLQGDDATDCSM 152 (194)
Q Consensus 138 thrgL~G~d~tdcs~ 152 (194)
|-|.|=+.--||-|+
T Consensus 183 WyRPlYkAFRsDSSf 197 (313)
T KOG3088|consen 183 WYRPLYKAFRTDSSF 197 (313)
T ss_pred eehHHHHHhccccch
Confidence 777776665566554
No 85
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=61.37 E-value=72 Score=25.76 Aligned_cols=7 Identities=29% Similarity=0.472 Sum_probs=2.9
Q ss_pred hHHHHHH
Q 029363 42 SYKTLKS 48 (194)
Q Consensus 42 ~y~klq~ 48 (194)
+++|++.
T Consensus 24 kl~kl~r 30 (151)
T PF14584_consen 24 KLRKLKR 30 (151)
T ss_pred HHHHHHH
Confidence 3444443
No 86
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=61.19 E-value=62 Score=26.42 Aligned_cols=17 Identities=12% Similarity=0.403 Sum_probs=7.9
Q ss_pred hHHhHHHHHHHHHHhhh
Q 029363 75 TKKIDRVETSLKESSRD 91 (194)
Q Consensus 75 ~kkler~e~el~~~~~e 91 (194)
++++++.|.+...+.+|
T Consensus 167 k~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 167 KKELEKKEKEIEALKKQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555554444443
No 87
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=61.02 E-value=60 Score=26.35 Aligned_cols=46 Identities=15% Similarity=0.116 Sum_probs=22.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 13 SDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 13 ~d~l~I~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
.|..++.+++++.-++ ++.++. |.+ -.+-+.+|-++++..++++.+
T Consensus 4 ~~~~fwq~I~FlIll~--ll~kfa-wkP-I~~~LeeR~~~I~~~Ld~Ae~ 49 (154)
T PRK06568 4 LDESFWLAVSFVIFVY--LIYRPA-KKA-ILNSLDAKILEVQEKVLKAEK 49 (154)
T ss_pred hHhHHHHHHHHHHHHH--HHHHHh-HHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555554444 355544 433 455555555555555554443
No 88
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=60.95 E-value=69 Score=26.25 Aligned_cols=18 Identities=6% Similarity=-0.010 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 029363 21 ISFCTAIICESISWLLIYR 39 (194)
Q Consensus 21 ia~~t~l~se~ls~~LVyr 39 (194)
..++..++.-++++++ |+
T Consensus 37 ~lI~F~iL~~ll~k~l-~~ 54 (181)
T PRK13454 37 LLVTLVAIYFVLTRVA-LP 54 (181)
T ss_pred HHHHHHHHHHHHHHHH-HH
Confidence 3334444445666666 44
No 89
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=60.67 E-value=52 Score=26.79 Aligned_cols=15 Identities=13% Similarity=0.279 Sum_probs=7.0
Q ss_pred hhhh--HHHHHHHHHHH
Q 029363 97 FKSG--AVVALVLFVVF 111 (194)
Q Consensus 97 ~ksm--~~~~l~~i~~f 111 (194)
.+|+ +...++.+|+|
T Consensus 66 ~~p~~~~~~~liq~Pif 82 (198)
T PF02096_consen 66 VNPLKGCLPPLIQIPIF 82 (198)
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 4444 34444455554
No 90
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=60.12 E-value=15 Score=35.09 Aligned_cols=54 Identities=9% Similarity=0.209 Sum_probs=34.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhh
Q 029363 39 RTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDL 92 (194)
Q Consensus 39 r~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el 92 (194)
++.....-|.+.+++++++++++.+..-.....+..+.||+.+|.|+..++.++
T Consensus 67 nqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 67 RQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 444555667777888888888775211000112234677888888888888887
No 91
>COG4920 Predicted membrane protein [Function unknown]
Probab=60.06 E-value=48 Score=28.77 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=15.1
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHH
Q 029363 28 ICESISWLLIYRTNSYKTLKSSIDKAS 54 (194)
Q Consensus 28 ~se~ls~~LVyr~e~y~klq~~~~~~~ 54 (194)
+.-++|-+.-.|+..|.+-+....+++
T Consensus 41 f~~glsiVm~~RSnp~l~~~~s~~eI~ 67 (249)
T COG4920 41 FFFGLSIVMGLRSNPYLKGVVSAQEIS 67 (249)
T ss_pred HHHHHHHHHhhccCcccccccCHHHHh
Confidence 334456666567766766555554443
No 92
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=58.67 E-value=84 Score=24.51 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Q 029363 26 AIICESISWLLIYRTNSYKTLKSSIDKASKKLET 59 (194)
Q Consensus 26 ~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k 59 (194)
.++--++.+++ |++ --+-+.+|-+.+++.+++
T Consensus 15 lil~~il~~~~-~~p-i~~~l~~R~~~I~~~l~~ 46 (156)
T PRK05759 15 LILVWFIMKFV-WPP-IMKALEERQKKIADGLAA 46 (156)
T ss_pred HHHHHHHHHHh-HHH-HHHHHHHHHHHHHHHHHH
Confidence 33334566665 443 233333344444443333
No 93
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=58.62 E-value=17 Score=30.59 Aligned_cols=59 Identities=8% Similarity=0.059 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHh
Q 029363 26 AIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESS 89 (194)
Q Consensus 26 ~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~ 89 (194)
+++-|.+.|.=.|+ .+-.+++++..++++++.++++.- ...+++.+.++++.++..+..
T Consensus 122 ~~v~~ml~~~~~~~-~k~D~~eA~~t~lk~~~~~~~~~l----e~Lqkn~~~~~k~~d~~ne~~ 180 (192)
T COG5374 122 SIVEEMLEENAKKG-GKIDKMEADSTDLKARLRKAQILL----EGLQKNQEELFKLLDKYNELR 180 (192)
T ss_pred HHHHHHHHHhhhcc-cchhhhhcchHHHHHHHhhhhHHH----HHHHHHHHHHHHHHHHHhHHH
Confidence 44456666665555 344566666666666666555411 113344555555555554433
No 94
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=58.44 E-value=88 Score=25.20 Aligned_cols=35 Identities=6% Similarity=0.120 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 26 AIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 26 ~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
.++.-++.+++ |.+ --+-+.+|-+.+++.++++++
T Consensus 27 lil~~iL~~~~-~kp-i~~~l~~R~~~I~~~l~~Ae~ 61 (173)
T PRK13460 27 LVVVLVLKKFA-WDV-ILKALDERASGVQNDINKASE 61 (173)
T ss_pred HHHHHHHHHHh-HHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 33334666666 432 334444444444444444443
No 95
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=58.40 E-value=82 Score=25.38 Aligned_cols=14 Identities=7% Similarity=-0.009 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHh
Q 029363 23 FCTAIICESISWLL 36 (194)
Q Consensus 23 ~~t~l~se~ls~~L 36 (194)
+...++--++.+++
T Consensus 26 i~Flil~~lL~~~l 39 (175)
T PRK14472 26 VTFVIVLLILKKIA 39 (175)
T ss_pred HHHHHHHHHHHHHh
Confidence 33333334566666
No 96
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=58.17 E-value=80 Score=23.96 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcCc
Q 029363 98 KSGAVVALVLFVVFGLLNSLFEGK 121 (194)
Q Consensus 98 ksm~~~~l~~i~~f~l~~~~f~g~ 121 (194)
+...+++++.+++..+..|+..|.
T Consensus 93 ~~~~~~~~~~lp~~a~~lY~~lG~ 116 (117)
T TIGR03142 93 RLAALVVVLLLPVLALGLYLKLGA 116 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 346667777788887777776663
No 97
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=58.14 E-value=39 Score=27.37 Aligned_cols=58 Identities=10% Similarity=0.190 Sum_probs=36.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhh------CCC-cccc-chhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 39 RTNSYKTLKSSIDKASKKLETMKIE------NPA-KIST-KKSKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 39 r~e~y~klq~~~~~~~kkl~k~ke~------~~~-~~~~-~k~~~kkler~e~el~~~~~el~~~k 96 (194)
-.+.|++|++|++.+..++.+.-+. .|| +++. -...+++..++|..+.++.+.|..-+
T Consensus 9 T~eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~A~ 74 (158)
T PRK05892 9 APAARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRTGP 74 (158)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhCE
Confidence 5789999999999987654443221 232 1221 12445566677888888888777544
No 98
>PRK11637 AmiB activator; Provisional
Probab=58.05 E-value=28 Score=32.12 Aligned_cols=16 Identities=19% Similarity=0.382 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 029363 43 YKTLKSSIDKASKKLE 58 (194)
Q Consensus 43 y~klq~~~~~~~kkl~ 58 (194)
.+.++.++++++++++
T Consensus 49 l~~l~~qi~~~~~~i~ 64 (428)
T PRK11637 49 LKSIQQDIAAKEKSVR 64 (428)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 99
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=57.71 E-value=1e+02 Score=25.17 Aligned_cols=58 Identities=12% Similarity=0.199 Sum_probs=28.2
Q ss_pred hHHhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhcC-ccccccCCcchHHHHHH
Q 029363 75 TKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG-KVVAKLPFKPFGIVMKM 137 (194)
Q Consensus 75 ~kkler~e~el~~~~~el~~~k~ksm~~~~l~~i~~f~l~~~~f~g-~~VakLPF~pi~~~~~~ 137 (194)
.+.+|++..++.+..+.-+..-+...+..+..-++++..+-.|--+ -++ +||-.|...
T Consensus 73 l~~le~~k~~id~~A~~~~~~~~w~gl~~l~~q~~~l~rLTf~e~sWDvM-----EPVTYfv~~ 131 (180)
T PF04678_consen 73 LAPLEKIKQEIDEKAEKRARRLLWGGLALLVVQFGILARLTFWEYSWDVM-----EPVTYFVGY 131 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchh-----hhHHHHHhH
Confidence 4445555555555444333333445555555555555444444223 222 677666544
No 100
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=57.32 E-value=88 Score=25.20 Aligned_cols=29 Identities=10% Similarity=0.013 Sum_probs=14.2
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHHHHHhh
Q 029363 31 SISWLLIYRTNSYKTLKSSIDKASKKLETMK 61 (194)
Q Consensus 31 ~ls~~LVyr~e~y~klq~~~~~~~kkl~k~k 61 (194)
+|.|++ |++ --+-+.+|-+.+++.+++++
T Consensus 35 lL~~fl-~kp-I~~~l~~R~~~I~~~l~~A~ 63 (174)
T PRK07352 35 LLYYFG-RGF-LGKILEERREAILQALKEAE 63 (174)
T ss_pred HHHHHh-HHH-HHHHHHHHHHHHHHHHHHHH
Confidence 566665 554 33444444444444444433
No 101
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=57.12 E-value=91 Score=24.29 Aligned_cols=34 Identities=9% Similarity=0.173 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHH
Q 029363 17 TVVGISFCTAIICESISWLLIY--RTNSYKTLKSSI 50 (194)
Q Consensus 17 ~I~~ia~~t~l~se~ls~~LVy--r~e~y~klq~~~ 50 (194)
..+.++++.++++.+.++++.. |++-+.++.+..
T Consensus 69 ~g~~~~~ia~li~~v~~~i~~~~IdP~~~~~~~~~~ 104 (163)
T PF13858_consen 69 VGFLISLIAGLISAVFQYIYFNYIDPDFFENYIEAQ 104 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 3455666666666666666521 444444444333
No 102
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=56.68 E-value=86 Score=25.57 Aligned_cols=7 Identities=0% Similarity=-0.140 Sum_probs=4.1
Q ss_pred HHHHHHh
Q 029363 30 ESISWLL 36 (194)
Q Consensus 30 e~ls~~L 36 (194)
-++++++
T Consensus 25 ~ll~kf~ 31 (155)
T PRK06569 25 IFVYKFI 31 (155)
T ss_pred HHHHHHh
Confidence 4666665
No 103
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=56.39 E-value=80 Score=27.17 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhh
Q 029363 41 NSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSL 94 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~ 94 (194)
..|.++++|-+++++|.++++. +..+++++++|..++.+.|..
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~-----------~~~~~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 69 ASLFDLREENEELKKELLELES-----------RLQELEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhcC
Confidence 3455666666666666666655 133445555555555555543
No 104
>PLN02943 aminoacyl-tRNA ligase
Probab=55.01 E-value=24 Score=36.31 Aligned_cols=52 Identities=13% Similarity=0.227 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhCCCccc-cch-------hhhHHhHHHHHHHHHHhhhhhh
Q 029363 42 SYKTLKSSIDKASKKLETMKIENPAKIS-TKK-------SKTKKIDRVETSLKESSRDLSL 94 (194)
Q Consensus 42 ~y~klq~~~~~~~kkl~k~ke~~~~~~~-~~k-------~~~kkler~e~el~~~~~el~~ 94 (194)
.-.||.++++++++++++++. ..+++. .+| +..+|++..++++..+.+.+..
T Consensus 890 E~~rL~K~l~klekei~~~~~-kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~ 949 (958)
T PLN02943 890 EVERLSKRLSKMQTEYDALAA-RLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAF 949 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777777777777776 433222 222 3444455555555555555544
No 105
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=54.48 E-value=34 Score=30.38 Aligned_cols=20 Identities=15% Similarity=0.431 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 029363 43 YKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 43 y~klq~~~~~~~kkl~k~ke 62 (194)
.+|-+.++++.+|||+.++.
T Consensus 199 Iekkk~ELER~qKRL~sLq~ 218 (267)
T PF10234_consen 199 IEKKKQELERNQKRLQSLQS 218 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444
No 106
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=53.72 E-value=33 Score=27.68 Aligned_cols=57 Identities=11% Similarity=0.187 Sum_probs=36.1
Q ss_pred cchhHHHHHHHHHHHHH-H-------HHHhhhhCCC-ccccc-hhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 39 RTNSYKTLKSSIDKASK-K-------LETMKIENPA-KISTK-KSKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 39 r~e~y~klq~~~~~~~k-k-------l~k~ke~~~~-~~~~~-k~~~kkler~e~el~~~~~el~~~k 96 (194)
-.+.|++|+++++.+.. + +.++.+ .|+ +++.+ ...+++...+|.++.++.+.|..-+
T Consensus 6 T~~G~~~L~~El~~L~~~~r~~~~~~i~~Ar~-~GDlsENaeY~aak~~~~~le~rI~~L~~~L~~A~ 72 (156)
T TIGR01461 6 TPEGYEKLKQELNYLWREERPEVTQKVTWAAS-LGDRSENADYQYGKKRLREIDRRVRFLTKRLENLK 72 (156)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-cCCcchhhhhHHHHHHHHHHHHHHHHHHHHHhcCE
Confidence 56889999999998863 3 355555 333 11110 1345666677778888887776654
No 107
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=52.89 E-value=1e+02 Score=25.59 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 029363 20 GISFCTAIICESISWLL 36 (194)
Q Consensus 20 ~ia~~t~l~se~ls~~L 36 (194)
++++++.+++-++-|++
T Consensus 4 i~~i~~~~vG~~~G~~~ 20 (201)
T PF12072_consen 4 IIAIVALIVGIGIGYLV 20 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444555555
No 108
>PHA01750 hypothetical protein
Probab=52.43 E-value=84 Score=22.43 Aligned_cols=40 Identities=25% Similarity=0.387 Sum_probs=20.8
Q ss_pred HHHHHHHH-HHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhh
Q 029363 46 LKSSIDKA-SKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDL 92 (194)
Q Consensus 46 lq~~~~~~-~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el 92 (194)
+++.++++ +++++.++.|-.+ -++|.+.+|++.++..+.+
T Consensus 32 lkdAvkeIV~~ELdNL~~ei~~-------~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 32 LKDAVKEIVNSELDNLKTEIEE-------LKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHhh
Confidence 33444442 4566666652211 1345556777777766654
No 109
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=51.68 E-value=64 Score=27.65 Aligned_cols=6 Identities=33% Similarity=0.744 Sum_probs=2.5
Q ss_pred HHHHhh
Q 029363 113 LLNSLF 118 (194)
Q Consensus 113 l~~~~f 118 (194)
+++.+|
T Consensus 242 i~mvl~ 247 (251)
T PF09753_consen 242 IMMVLF 247 (251)
T ss_pred HHHHHH
Confidence 444443
No 110
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=51.46 E-value=1.1e+02 Score=24.83 Aligned_cols=30 Identities=3% Similarity=-0.058 Sum_probs=16.4
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 31 SISWLLIYRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 31 ~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
++.|++ |+ +--+-+.+|-+.+++.++++++
T Consensus 40 lL~~fl-~k-PI~~~l~~R~~~I~~~l~~Ae~ 69 (184)
T CHL00019 40 VLIYFG-KG-VLSDLLDNRKQTILNTIRNSEE 69 (184)
T ss_pred HHHHHh-Hh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 666766 54 3555555555555555555443
No 111
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=51.20 E-value=59 Score=25.91 Aligned_cols=57 Identities=11% Similarity=0.194 Sum_probs=34.2
Q ss_pred cchhHHHHHHHHHHHHH--------HHHHhhhhCCC-cccc-chhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 39 RTNSYKTLKSSIDKASK--------KLETMKIENPA-KIST-KKSKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 39 r~e~y~klq~~~~~~~k--------kl~k~ke~~~~-~~~~-~k~~~kkler~e~el~~~~~el~~~k 96 (194)
-.+.|++|+++++.+.. +++++.+ .++ +++. -.....+..+++..+.++.++|...+
T Consensus 8 t~~g~~~L~~eL~~l~~~~r~~~~~~~~~A~~-~gdl~En~~y~~a~~~~~~~~~ri~~l~~~L~~a~ 74 (157)
T PRK00226 8 TQEGYEKLEEELEELKTVERPEIIEAIAEARE-HGDLSENAEYHAAKEEQGFIEGRIRELEDKLSNAE 74 (157)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-cCCccccccchHHHHHHHHHHHHHHHHHHHHHhCe
Confidence 45789999999998876 5555554 222 1222 11223344455777777777776655
No 112
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=51.12 E-value=85 Score=24.28 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 19 VGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 19 ~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
.+++++++++.-.+...+ ++.+.++.+.+++.++..++..+.
T Consensus 13 aIigil~~i~~p~~~~~~--~~a~~~~~~~~l~~i~~al~~y~~ 54 (134)
T TIGR01710 13 VILGLLAALVAPKLFSQA--DKAKAQVAKAQIKALKNALDMYRL 54 (134)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555554433333332 555566667777777666666555
No 113
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=50.91 E-value=31 Score=31.80 Aligned_cols=54 Identities=17% Similarity=0.308 Sum_probs=33.0
Q ss_pred cchhHH-HHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 39 RTNSYK-TLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 39 r~e~y~-klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k 96 (194)
+-++|. .+++++++++++++++++ ... . .+++++++..+++++....+++.-.+
T Consensus 239 ~~~~~~~~l~~~~~~~~~~i~~l~~-~l~-~--~~k~~~k~~~~~~q~~~~~k~~~~~~ 293 (406)
T PF02388_consen 239 NGKEYLESLQEKLEKLEKEIEKLEE-KLE-K--NPKKKNKLKELEEQLASLEKRIEEAE 293 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH-HHH-H---THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHH-h--CcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444 678888888888888777 322 1 11556666666666666666665433
No 114
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=49.63 E-value=37 Score=34.49 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhCCCccc-cch-------hhhHHhHHHHHHHHHHhhhh
Q 029363 42 SYKTLKSSIDKASKKLETMKIENPAKIS-TKK-------SKTKKIDRVETSLKESSRDL 92 (194)
Q Consensus 42 ~y~klq~~~~~~~kkl~k~ke~~~~~~~-~~k-------~~~kkler~e~el~~~~~el 92 (194)
.-+||+++++++++++++++. +.++++ .+| +.++|++..++++..+.+.+
T Consensus 812 e~~rL~K~l~kl~~ei~~~~~-kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l 869 (874)
T PRK05729 812 ELARLEKELAKLEKEIERVEK-KLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERL 869 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777778887777777 433222 222 33444444555554444444
No 115
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=49.60 E-value=61 Score=22.14 Aligned_cols=49 Identities=18% Similarity=0.378 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhCCCccc-cch-------hhhHHhHHHHHHHHHHhhhhh
Q 029363 44 KTLKSSIDKASKKLETMKIENPAKIS-TKK-------SKTKKIDRVETSLKESSRDLS 93 (194)
Q Consensus 44 ~klq~~~~~~~kkl~k~ke~~~~~~~-~~k-------~~~kkler~e~el~~~~~el~ 93 (194)
.||+.+++++++.++.... ..+... ..+ +...+++..+.++..+...|.
T Consensus 7 ~rL~Kel~kl~~~i~~~~~-kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~ 63 (66)
T PF10458_consen 7 ERLEKELEKLEKEIERLEK-KLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALE 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666555 322111 111 344555555555555555443
No 116
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=49.47 E-value=33 Score=35.43 Aligned_cols=52 Identities=19% Similarity=0.265 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhCCCccc-cch-------hhhHHhHHHHHHHHHHhhhhhhh
Q 029363 43 YKTLKSSIDKASKKLETMKIENPAKIS-TKK-------SKTKKIDRVETSLKESSRDLSLF 95 (194)
Q Consensus 43 y~klq~~~~~~~kkl~k~ke~~~~~~~-~~k-------~~~kkler~e~el~~~~~el~~~ 95 (194)
-.||+++++++++++++.+. +.++++ .+| +.++|++..++++..+.+.+...
T Consensus 931 ~~rL~K~l~kl~~ei~~~~~-kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l 990 (995)
T PTZ00419 931 LAKLEKKLAKLQKSLESYLK-KISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEEL 990 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777666 433222 222 33444555555555555554443
No 117
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=49.45 E-value=1.4e+02 Score=24.21 Aligned_cols=37 Identities=27% Similarity=0.330 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 26 AIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 26 ~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
+-++++=+.+-..++..+..++.+.++++.++++++.
T Consensus 58 a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~ 94 (177)
T PF07798_consen 58 AAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQ 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445666666666666666666666554
No 118
>PF08656 DASH_Dad3: DASH complex subunit Dad3; InterPro: IPR013965 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=49.44 E-value=1e+02 Score=22.46 Aligned_cols=54 Identities=19% Similarity=0.382 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh--hhhhHHHHH
Q 029363 41 NSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK--FKSGAVVAL 105 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k--~ksm~~~~l 105 (194)
++|++|-..++++...++.+-. ... + . +.+=+.+.++.++++..- ||..+|.-+
T Consensus 10 ~eY~~La~~L~~L~~~l~~L~~-~~~--~-~-------~~lL~~LR~LE~K~glV~TL~KaSVYslv 65 (78)
T PF08656_consen 10 DEYQRLADNLKTLSDTLKDLNS-SNS--P-S-------EELLDGLRELERKIGLVYTLFKASVYSLV 65 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-cCC--C-h-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999833 211 1 1 144456666777777665 777666543
No 119
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=49.31 E-value=29 Score=35.78 Aligned_cols=54 Identities=15% Similarity=0.348 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhCCCc--------cccchhhhHHhHHHHHHHHHHhhhhhhh
Q 029363 41 NSYKTLKSSIDKASKKLETMKIENPAK--------ISTKKSKTKKIDRVETSLKESSRDLSLF 95 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke~~~~~--------~~~~k~~~kkler~e~el~~~~~el~~~ 95 (194)
.+..+++++++++|+++++++. +.++ .+.+.+.+.|+++++.++..+.+++...
T Consensus 930 ~e~~kl~kkl~klqk~~~~l~~-r~~~~~~~~k~p~~v~~~~~~Kl~~~~~ei~~~~~~~~~l 991 (995)
T KOG0432|consen 930 SEIQKLAKKLEKLQKQLDKLQA-RISSSDYQEKAPLEVKEKNKEKLKELEAEIENLKAALANL 991 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5677888888888888888877 5221 1123356777888888888877766543
No 120
>PRK15396 murein lipoprotein; Provisional
Probab=49.25 E-value=80 Score=22.91 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 029363 41 NSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke 62 (194)
++..+|+.+++.++.+.+.++.
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~ 46 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSN 46 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888888776
No 121
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=49.02 E-value=1.4e+02 Score=25.06 Aligned_cols=35 Identities=9% Similarity=0.159 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 26 AIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 26 ~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
.++--++.+++ |.+ --+-+.+|-+.+++.++++++
T Consensus 59 lIlv~lL~k~l-~kP-i~~~L~~R~~~I~~~L~~Ae~ 93 (205)
T PRK06231 59 SILLLLGIFLF-WKP-TQRFLNKRKELIEAEINQANE 93 (205)
T ss_pred HHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 33334566665 543 333344444444444444333
No 122
>PF04483 DUF565: Protein of unknown function (DUF565); InterPro: IPR007572 This family represents Ycf20, it is found in cyanobacteria and is also encoded in plant and algal chloroplasts; its function is unknown. As the family is exclusively found in phototrophic organisms it may therefore play a role in photosynthesis.
Probab=48.62 E-value=21 Score=24.48 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhhccchh
Q 029363 20 GISFCTAIICESISWLLIYRTNS 42 (194)
Q Consensus 20 ~ia~~t~l~se~ls~~LVyr~e~ 42 (194)
+.|.++.+++|+++++. |+...
T Consensus 8 i~a~~iv~~~E~i~~l~-Y~~~~ 29 (60)
T PF04483_consen 8 IAAAIIVLFIEVISRLR-YSKPK 29 (60)
T ss_pred HHHHHHHHHHHHHHHHh-hcccc
Confidence 46677778889999998 88865
No 123
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=48.46 E-value=1.3e+02 Score=23.54 Aligned_cols=40 Identities=13% Similarity=0.173 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Q 029363 18 VVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLET 59 (194)
Q Consensus 18 I~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k 59 (194)
++...+...++.-+++.++ |.+ -.+-+.+|-+.+++.+++
T Consensus 10 ~~~qli~Flil~~~l~kfl-~kP-i~~~l~~R~~~I~~~l~~ 49 (141)
T PRK08476 10 MLATFVVFLLLIVILNSWL-YKP-LLKFMDNRNASIKNDLEK 49 (141)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHH
Confidence 3333444444445777776 543 333444444444333333
No 124
>PRK04654 sec-independent translocase; Provisional
Probab=48.30 E-value=93 Score=26.82 Aligned_cols=17 Identities=0% Similarity=0.112 Sum_probs=12.1
Q ss_pred cccccchhhHHHHHHHH
Q 029363 9 SLKYSDSLTVVGISFCT 25 (194)
Q Consensus 9 ~~~~~d~l~I~~ia~~t 25 (194)
.+-+..+++|++++++.
T Consensus 3 gIG~~ELLlI~VVALlV 19 (214)
T PRK04654 3 DIGVGELTLIAVVALVV 19 (214)
T ss_pred CccHHHHHHHHHHHHHh
Confidence 34566788888888765
No 125
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=47.29 E-value=1.4e+02 Score=23.66 Aligned_cols=66 Identities=14% Similarity=0.222 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhh
Q 029363 22 SFCTAIICESISWLLIYR--TNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRD 91 (194)
Q Consensus 22 a~~t~l~se~ls~~LVyr--~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~e 91 (194)
-..|+++ +++--+|+=+ .-+-+.++.+++++-.-+++++.+--+- +...++.+++++..+.+...+
T Consensus 46 Nt~ttIi-tFlmvfLIQn~q~Rd~~al~~KLdeLi~~~~~a~n~li~i---E~l~~~el~~~~~~~~~~~~~ 113 (132)
T PF04120_consen 46 NTATTII-TFLMVFLIQNTQNRDTKALQAKLDELIRAVKEARNELIDI---EDLTEEELEEIRKRYERLAEQ 113 (132)
T ss_pred ccHHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCc---ccCCHHHHHHHHHHHHHHHHH
Confidence 3444555 5655566522 1233356666666666666666622221 233366777777766664443
No 126
>COG3404 Methenyl tetrahydrofolate cyclohydrolase [Amino acid transport and metabolism]
Probab=47.26 E-value=1.5e+02 Score=25.46 Aligned_cols=44 Identities=11% Similarity=0.158 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhh
Q 029363 18 VVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIE 63 (194)
Q Consensus 18 I~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~ 63 (194)
-++-|+.++|.+-+.+-- ..+.+|..+..++++.-++++++|.+
T Consensus 29 Al~ga~g~~L~~MV~~lt--~gKk~Y~~~d~e~k~i~~~~~~ik~~ 72 (208)
T COG3404 29 ALVGAMGCALASMVANLT--RGKKGYEDYDDEMKEILEELQKIKAE 72 (208)
T ss_pred HHHHHHHHHHHHHHHHHH--hcccchhhhhhhHHHHHHHHHHHHHH
Confidence 345666677775554433 37778999999999988888888764
No 127
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=47.17 E-value=94 Score=21.52 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHH----HHHHHHHHHhhh
Q 029363 23 FCTAIICESISWLLIYRTNSYKTLKSSI----DKASKKLETMKI 62 (194)
Q Consensus 23 ~~t~l~se~ls~~LVyr~e~y~klq~~~----~~~~kkl~k~ke 62 (194)
+++|.+.=.+--+| +-+++=+++++++ +++.+++++..+
T Consensus 5 ~l~Ga~~Ga~~glL-~aP~sG~e~R~~l~~~~~~~~~~~~~~~~ 47 (74)
T PF12732_consen 5 FLAGAAAGAAAGLL-FAPKSGKETREKLKDKAEDLKDKAKDLYE 47 (74)
T ss_pred HHHHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344 3555555555444 444444444433
No 128
>PHA02047 phage lambda Rz1-like protein
Probab=47.02 E-value=1.3e+02 Score=22.98 Aligned_cols=21 Identities=10% Similarity=0.159 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 029363 42 SYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 42 ~y~klq~~~~~~~kkl~k~ke 62 (194)
.-+.+.+.+|.++.++...++
T Consensus 35 ~a~~la~qLE~a~~r~~~~Q~ 55 (101)
T PHA02047 35 EAKRQTARLEALEVRYATLQR 55 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444544444444444
No 129
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=47.01 E-value=93 Score=29.79 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHhhh
Q 029363 17 TVVGISFCTAIICESISWLLIYRTNSYKTL-KSSIDKASKKLETMKI 62 (194)
Q Consensus 17 ~I~~ia~~t~l~se~ls~~LVyr~e~y~kl-q~~~~~~~kkl~k~ke 62 (194)
.++++.++.+++.-++.+++ =.+++|-=. |.+.++..+.++..+-
T Consensus 185 ~l~~~~~i~~~~~l~~l~~~-PESPk~Ll~~k~~~~~A~~sl~~y~G 230 (485)
T KOG0569|consen 185 YLLAFPLIPALLQLALLPFL-PESPKYLLIKKGDEEEARKALKFYRG 230 (485)
T ss_pred HHHHHHHHHHHHHHHHHhcC-CCCcchHHHHcCCHHHHHHHHHHHhC
Confidence 67778888888888888877 599999877 6788888888877766
No 130
>PF14182 YgaB: YgaB-like protein
Probab=46.80 E-value=58 Score=23.82 Aligned_cols=46 Identities=9% Similarity=0.250 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhh
Q 029363 41 NSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLF 95 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~ 95 (194)
++.=.||+++++-++-=..+++ -. ++++++.+++++..+.++|...
T Consensus 14 D~LL~LQsElERCqeIE~eL~~-l~--------~ea~l~~i~~EI~~mkk~Lk~I 59 (79)
T PF14182_consen 14 DKLLFLQSELERCQEIEKELKE-LE--------REAELHSIQEEISQMKKELKEI 59 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HH--------HHHhHHHHHHHHHHHHHHHHHH
Confidence 4445678888775553333332 11 1677888888888888877543
No 131
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=46.20 E-value=59 Score=27.56 Aligned_cols=26 Identities=4% Similarity=-0.042 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHH
Q 029363 23 FCTAIICESISWLLIYRTNSYKTLKSSI 50 (194)
Q Consensus 23 ~~t~l~se~ls~~LVyr~e~y~klq~~~ 50 (194)
+++|++ +||-=.-|-.-..++.+++.
T Consensus 143 ~LvGVL--vLQaG~~YAe~~~~~~~~~~ 168 (196)
T PF08229_consen 143 VLVGVL--VLQAGQWYAERKDAKELEEF 168 (196)
T ss_pred HHHHHH--HHHhhHHHHhhhhHHHHHHH
Confidence 344444 45555544333333333333
No 132
>PRK02463 OxaA-like protein precursor; Provisional
Probab=45.90 E-value=70 Score=28.75 Aligned_cols=56 Identities=7% Similarity=0.025 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhh----hhhhhhh----HHHHHHHHHHHH
Q 029363 45 TLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLS----LFKFKSG----AVVALVLFVVFG 112 (194)
Q Consensus 45 klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~----~~k~ksm----~~~~l~~i~~f~ 112 (194)
..+++|++++-+++++++ +.. .. +-+++.++++.|++ -....|+ .+-+++-+|+|.
T Consensus 88 ~~~~KM~~lqPe~~~Iq~-Kyk-------~~----~~~~~~~~~q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~ 151 (307)
T PRK02463 88 YQSEKMAYLKPVFEPINE-RLK-------NA----TTQEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFS 151 (307)
T ss_pred HHHHHHHHhChhHHHHHH-HHh-------cC----CChHHHHHHHHHHHHHHHHcCCCCccccchHHHHHHHHHHH
Confidence 346788888888888888 211 12 12344445555554 2227775 355566677775
No 133
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=45.71 E-value=1.4e+02 Score=26.95 Aligned_cols=39 Identities=13% Similarity=0.293 Sum_probs=16.9
Q ss_pred HhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHh
Q 029363 77 KIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSL 117 (194)
Q Consensus 77 kler~e~el~~~~~el~~~k~ksm~~~~l~~i~~f~l~~~~ 117 (194)
..|..+..+.+.++|.- +.-.++...+....++.+|...
T Consensus 289 ~~ee~~ldl~~I~~Qsl--rL~~~~l~~~~~~~l~~iWsdl 327 (340)
T PF12794_consen 289 EVEEPELDLEQISQQSL--RLLRSILLLILLVGLYWIWSDL 327 (340)
T ss_pred CcCCcccCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444432 2222333334444444466654
No 134
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=45.36 E-value=1.1e+02 Score=23.97 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=14.6
Q ss_pred HHhHHHHHHHHHHhhhhhhh
Q 029363 76 KKIDRVETSLKESSRDLSLF 95 (194)
Q Consensus 76 kkler~e~el~~~~~el~~~ 95 (194)
...+...++.++.+++++..
T Consensus 63 ~~~~t~~~~~k~~~~qls~v 82 (142)
T PF11712_consen 63 EPEDTPAQELKSVKRQLSTV 82 (142)
T ss_pred CCcCcHHHHHHHHHHHHHHH
Confidence 34456678889999999654
No 135
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=45.16 E-value=1.5e+02 Score=24.40 Aligned_cols=6 Identities=33% Similarity=0.573 Sum_probs=2.1
Q ss_pred HHHHHH
Q 029363 82 ETSLKE 87 (194)
Q Consensus 82 e~el~~ 87 (194)
|.++..
T Consensus 124 e~e~~~ 129 (161)
T TIGR02894 124 EKELEK 129 (161)
T ss_pred HHHHHH
Confidence 333333
No 136
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=44.98 E-value=1.6e+02 Score=23.67 Aligned_cols=11 Identities=9% Similarity=0.171 Sum_probs=5.0
Q ss_pred HHHHHHHHHHh
Q 029363 26 AIICESISWLL 36 (194)
Q Consensus 26 ~l~se~ls~~L 36 (194)
.++--++.+++
T Consensus 33 lil~~lL~~fl 43 (167)
T PRK08475 33 LIFVGILWYFA 43 (167)
T ss_pred HHHHHHHHHHH
Confidence 33334555554
No 137
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=44.95 E-value=57 Score=31.75 Aligned_cols=50 Identities=24% Similarity=0.292 Sum_probs=32.5
Q ss_pred HHhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhcC----ccccccC
Q 029363 76 KKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG----KVVAKLP 127 (194)
Q Consensus 76 kkler~e~el~~~~~el~~~k~ksm~~~~l~~i~~f~l~~~~f~g----~~VakLP 127 (194)
....++++..-.++ .+.-|.--++|+++.++++|-.++++|.| +.|--.|
T Consensus 457 s~~srves~~~~Lk--~s~pKanK~LWIsvAliVLLAaLlSfLtg~~fq~~vdaAp 510 (538)
T PF05781_consen 457 SRYSRVESWASYLK--TSFPKANKVLWISVALIVLLAALLSFLTGLFFQRCVDAAP 510 (538)
T ss_pred hHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhccCC
Confidence 33445554444332 33334557899999999999999999998 4444444
No 138
>COG4499 Predicted membrane protein [Function unknown]
Probab=44.13 E-value=38 Score=31.87 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=20.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhC
Q 029363 39 RTNSYKTLKSSIDKASKKLETMKIEN 64 (194)
Q Consensus 39 r~e~y~klq~~~~~~~kkl~k~ke~~ 64 (194)
|.+..+++.+++++..+++++.+++.
T Consensus 367 r~e~lk~~n~~lqd~~k~~~e~k~e~ 392 (434)
T COG4499 367 RQELLKEYNKKLQDYTKKLGEVKDET 392 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 45566778888899999998888754
No 139
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=43.55 E-value=35 Score=32.80 Aligned_cols=21 Identities=10% Similarity=0.260 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 029363 42 SYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 42 ~y~klq~~~~~~~kkl~k~ke 62 (194)
+.++|++++++++++++++++
T Consensus 32 kie~L~kql~~Lk~q~~~l~~ 52 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLND 52 (489)
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 788889999999888887666
No 140
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=43.30 E-value=1.5e+02 Score=25.84 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=13.4
Q ss_pred HHHHHHHHH-HHHHHHHHhhccchhHHHHHH
Q 029363 19 VGISFCTAI-ICESISWLLIYRTNSYKTLKS 48 (194)
Q Consensus 19 ~~ia~~t~l-~se~ls~~LVyr~e~y~klq~ 48 (194)
+++|++.|+ +|+.+.-.+ ++.|-=+++.+
T Consensus 87 ~~lAvliaivIs~pl~l~i-F~~eI~~~l~~ 116 (301)
T PF14362_consen 87 LLLAVLIAIVISEPLELKI-FEKEIDQKLDE 116 (301)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 334544444 344443333 67655554443
No 141
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=43.29 E-value=46 Score=32.00 Aligned_cols=54 Identities=24% Similarity=0.329 Sum_probs=36.4
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhC--CCccccchhhhHHhHHHHHHHHHHhhhhh
Q 029363 40 TNSYKTLKSSIDKASKKLETMKIEN--PAKISTKKSKTKKIDRVETSLKESSRDLS 93 (194)
Q Consensus 40 ~e~y~klq~~~~~~~kkl~k~ke~~--~~~~~~~k~~~kkler~e~el~~~~~el~ 93 (194)
++.-+.|++++..+++++++..+.. ......++.-.++|++.|.+|..+..||=
T Consensus 365 ~~~ek~lKeeI~~lk~~l~~~~~~~~~~~~~~~~~~~~e~i~~kE~eLe~L~~elD 420 (492)
T PF06273_consen 365 TEEEKFLKEEINALKERLEEEEASSEKSKGSGEEESLREEISQKEKELEKLTRELD 420 (492)
T ss_pred cccchhhhhhHHHHHHHHHhhhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 4456789999999999998876621 11011234456677888888888777773
No 142
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=43.19 E-value=73 Score=24.18 Aligned_cols=12 Identities=33% Similarity=0.612 Sum_probs=6.0
Q ss_pred hhHHhHHHHHHH
Q 029363 74 KTKKIDRVETSL 85 (194)
Q Consensus 74 ~~kkler~e~el 85 (194)
+.++|+++|+.+
T Consensus 88 ~~k~i~~le~~I 99 (100)
T PF04568_consen 88 HRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 344555555544
No 143
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=43.11 E-value=1.1e+02 Score=21.16 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029363 43 YKTLKSSIDKASKKLET 59 (194)
Q Consensus 43 y~klq~~~~~~~kkl~k 59 (194)
...+++..++..++..+
T Consensus 35 ~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 35 AEDLKDKAKDLYEEAKE 51 (74)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555444
No 144
>PRK12705 hypothetical protein; Provisional
Probab=42.67 E-value=1.1e+02 Score=29.66 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc
Q 029363 18 VVGISFCTAIICESISWLLIYRT 40 (194)
Q Consensus 18 I~~ia~~t~l~se~ls~~LVyr~ 40 (194)
++++-+++-+++-++.|+. ++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~-~~~ 29 (508)
T PRK12705 8 VILLLLIGLLLGVLVVLLK-KRQ 29 (508)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHH
Confidence 3333333444444444444 344
No 145
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=42.02 E-value=1.2e+02 Score=26.41 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=7.9
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 029363 98 KSGAVVALVLFVVFGLLN 115 (194)
Q Consensus 98 ksm~~~~l~~i~~f~l~~ 115 (194)
.-.+..|++.+.+|-+++
T Consensus 151 ~~gi~aml~Vf~LF~lvm 168 (230)
T PF03904_consen 151 YKGIGAMLFVFMLFALVM 168 (230)
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 334444444444443443
No 146
>PF06133 DUF964: Protein of unknown function (DUF964); InterPro: IPR010368 This entry consists of several relatively short bacterial and archaeal hypothetical sequences. It also includes YlbF and YmcA proteins which are involved in the formation of biofilms []. YlbF regulates sporulation prior to stage II, positively controlling the competence regulator ComK at a post-transcriptional level. It may also modulate the translation, stability or activity of ComS and may work together with YmcA to regulate community development [].; PDB: 2IAZ_C 2OEE_A 2OEQ_D 2PIH_A.
Probab=41.86 E-value=80 Score=23.02 Aligned_cols=40 Identities=13% Similarity=0.264 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHH
Q 029363 45 TLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKE 87 (194)
Q Consensus 45 klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~ 87 (194)
++-.+..+.++++..++. .|. ..+ +...++++.++.+++.
T Consensus 37 ~l~~~f~~~q~~~~~~q~-~g~-~~~-~e~~~~l~~~~~~l~~ 76 (108)
T PF06133_consen 37 KLIEEFQKLQQELQNAQM-YGK-EPP-KEEIEELQELQEELMQ 76 (108)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTS-CHH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh-hcc-CCc-HHHHHHHHHHHHHHHc
Confidence 333333444555655555 433 211 3445555555555543
No 147
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=41.28 E-value=1.1e+02 Score=20.44 Aligned_cols=60 Identities=20% Similarity=0.185 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Q 029363 41 NSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALV 106 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k~ksm~~~~l~ 106 (194)
++|++.++++.++.+++++..+ +. .+.+.+++++....+-...-..+-..||-.+.-++-
T Consensus 1 ~e~~~~~~~i~a~~e~l~~~~~-~l-----t~e~~~~l~~~~~al~~~~~~~~e~afr~G~~d~l~ 60 (64)
T PF12644_consen 1 EEYATKEDEIMATKEELEELEE-RL-----TKEDKKRLEEYIDALGARWGLESEEAFRQGFRDGLR 60 (64)
T ss_pred CcHHHHHHHHHHHHHHHHHHHh-hc-----CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4688888899999999998876 31 223455566555555554444444446666555443
No 148
>PRK12705 hypothetical protein; Provisional
Probab=41.25 E-value=1.4e+02 Score=28.88 Aligned_cols=20 Identities=5% Similarity=-0.006 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 029363 17 TVVGISFCTAIICESISWLL 36 (194)
Q Consensus 17 ~I~~ia~~t~l~se~ls~~L 36 (194)
+.++++++.+++.-++.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~ 29 (508)
T PRK12705 10 LLLLIGLLLGVLVVLLKKRQ 29 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 149
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=41.21 E-value=1.1e+02 Score=22.78 Aligned_cols=18 Identities=28% Similarity=0.398 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 029363 41 NSYKTLKSSIDKASKKLE 58 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~ 58 (194)
|.|++||+++++.++.++
T Consensus 68 eA~~eL~~eI~eAK~dLr 85 (91)
T PF08285_consen 68 EAAKELQKEIKEAKADLR 85 (91)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 150
>PRK06330 transcript cleavage factor/unknown domain fusion protein; Validated
Probab=41.14 E-value=64 Score=32.52 Aligned_cols=57 Identities=12% Similarity=0.204 Sum_probs=39.4
Q ss_pred cchhHHHHHHHHHHHHH--------HHHHhhhhCCCccccc--hhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 39 RTNSYKTLKSSIDKASK--------KLETMKIENPAKISTK--KSKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 39 r~e~y~klq~~~~~~~k--------kl~k~ke~~~~~~~~~--k~~~kkler~e~el~~~~~el~~~k 96 (194)
-.+.|++|++|++.+.. ++.+|.+ -|+-.++. +..+++..+++.++.++.++|..-+
T Consensus 570 T~eG~~kLkeEL~~L~~v~rpei~k~I~eAR~-~GDLsENaEY~aAKe~q~~le~RI~~Le~~L~rA~ 636 (718)
T PRK06330 570 TSESFTRMKNKLQSLVGKEMVENAKEIEDARA-LGDLRENSEYKFALEKRARLQEEIRVLSEEINRAR 636 (718)
T ss_pred CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH-CCCcccchhhHHHHHHHHHHHHHHHHHHHHHccCE
Confidence 67899999999999876 6777766 44421122 2445666677777777887777665
No 151
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.12 E-value=43 Score=30.30 Aligned_cols=12 Identities=33% Similarity=0.595 Sum_probs=5.8
Q ss_pred HHhHHHHHHHHH
Q 029363 76 KKIDRVETSLKE 87 (194)
Q Consensus 76 kkler~e~el~~ 87 (194)
..|+|.|.++..
T Consensus 81 ~ELdRREr~~a~ 92 (313)
T KOG3088|consen 81 QELDRRERALAR 92 (313)
T ss_pred HHHhHHHHHHhh
Confidence 344555555444
No 152
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=41.12 E-value=54 Score=25.71 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=12.7
Q ss_pred hhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 73 SKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 73 ~~~kkler~e~el~~~~~el~~~k 96 (194)
...+++...+..++...+|+...+
T Consensus 98 ~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 98 QLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555443
No 153
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=41.11 E-value=66 Score=33.34 Aligned_cols=16 Identities=44% Similarity=0.567 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHhhh
Q 029363 47 KSSIDKASKKLETMKI 62 (194)
Q Consensus 47 q~~~~~~~kkl~k~ke 62 (194)
+.++.++++|++|+|.
T Consensus 929 ~~e~~kl~kkl~klqk 944 (995)
T KOG0432|consen 929 DSEIQKLAKKLEKLQK 944 (995)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 154
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=40.55 E-value=1.8e+02 Score=23.42 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHH----HHhhhhhhhhh
Q 029363 41 NSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLK----ESSRDLSLFKF 97 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~----~~~~el~~~k~ 97 (194)
+.+..++..++...+.++.+++...+ ...-.++++.+|.+.. +...++.-.++
T Consensus 27 ~e~~~~k~ql~~~d~~i~~Lk~~~~d----~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~ 83 (155)
T PF06810_consen 27 EERDNLKTQLKEADKQIKDLKKSAKD----NEELKKQIEELQAKNKTAKEEYEAKLAQMKK 83 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777777777772222 2233556666666666 45555555554
No 155
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=40.38 E-value=83 Score=23.50 Aligned_cols=6 Identities=17% Similarity=0.230 Sum_probs=2.5
Q ss_pred HHHHHh
Q 029363 31 SISWLL 36 (194)
Q Consensus 31 ~ls~~L 36 (194)
++.+++
T Consensus 15 ~l~~~~ 20 (132)
T PF00430_consen 15 LLNKFL 20 (132)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 444443
No 156
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.33 E-value=1.1e+02 Score=24.59 Aligned_cols=45 Identities=20% Similarity=0.249 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccchh-HHHHHHHHHHHHHHHHHhhhh
Q 029363 19 VGISFCTAIICESISWLLIYRTNS-YKTLKSSIDKASKKLETMKIE 63 (194)
Q Consensus 19 ~~ia~~t~l~se~ls~~LVyr~e~-y~klq~~~~~~~kkl~k~ke~ 63 (194)
.+||+++|++.-.+-..|--+.-+ -+++|.++++.+.++|.-+.|
T Consensus 11 a~igLvvGi~IG~li~Rlt~~~~k~q~~~q~ELe~~K~~ld~~rqe 56 (138)
T COG3105 11 ALIGLVVGIIIGALIARLTNRKLKQQQKLQYELEKVKAQLDEYRQE 56 (138)
T ss_pred HHHHHHHHHHHHHHHHHHcchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345555665555555555322222 126777888777777776653
No 157
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=40.31 E-value=1.2e+02 Score=21.44 Aligned_cols=74 Identities=8% Similarity=0.268 Sum_probs=33.0
Q ss_pred chhHHHHHHHHHHHHHHHHH----hhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh-hhhhHHHHHHHHHHHHHH
Q 029363 40 TNSYKTLKSSIDKASKKLET----MKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK-FKSGAVVALVLFVVFGLL 114 (194)
Q Consensus 40 ~e~y~klq~~~~~~~kkl~k----~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k-~ksm~~~~l~~i~~f~l~ 114 (194)
.+++.++++++++.+..+.+ +-+ |+..-+.=..+...++..-+.+....+++-... ++..-+..++.+++..++
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~-Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~ 80 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLE-RGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIII 80 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhh
Confidence 35677777777776664443 222 222000000122223333333333444444444 455555555555555333
No 158
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=40.23 E-value=1.9e+02 Score=23.03 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 029363 43 YKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 43 y~klq~~~~~~~kkl~k~ke 62 (194)
|+.+++.+.+...++++++.
T Consensus 119 ~~~~~~~l~~k~~~~~kl~~ 138 (218)
T cd07596 119 LQSLKKDLASKKAQLEKLKA 138 (218)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34445555555666666665
No 159
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=40.11 E-value=1.4e+02 Score=21.32 Aligned_cols=23 Identities=9% Similarity=0.329 Sum_probs=14.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhhh
Q 029363 40 TNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 40 ~e~y~klq~~~~~~~kkl~k~ke 62 (194)
++.+++..+.+++++++++...+
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~ 47 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITK 47 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Confidence 44566666666666666666665
No 160
>PF04961 FTCD_C: Formiminotransferase-cyclodeaminase; InterPro: IPR007044 Enzymes containing the cyclodeaminase domain function in channeling one-carbon units to the folate pool. In most cases, this domain catalyses the cyclisation of formimidoyltetrahydrofolate to methenyltetrahydrofolate as shown in reaction (1). In the methylotrophic bacterium Methylobacterium extorquens, however, it catalyses the interconversion of formyltetrahydrofolate and methylenetetrahydrofolate [],as shown in reaction (2) (1) 5-formimidoyltetrahydrofolate = 5,10-methenyltetrahydrofolate + NH(3) (2) 10- formyltetrahydrofolate = 5,10-methenyltetrahydrofolate + H(2)O In prokaryotes, this domain mostly occurs on its own, while in eukaryotes it is fused to a glutamate formiminotransferase domain (which catalyses the previous step in the pathway) to form the bifunctional enzyme formiminotransferase-cyclodeaminase []. The eukaryotic enzyme is a circular tetramer of homodimers [], while the prokaryotic enzyme is a dimer [, ]. The crystal structure of the cyclodeaminase enzyme (Q9X1P6 from SWISSPROT) from Thermaotogoa maritima has been studied []. It is a homodimer, where each monomer is composed of six alpha helices arranged in an up and down helical bundle, forming a novel fold. The location of the active site is not known, but sequence alignments revealed two clusters of conserved residues located in a deep pocket within the dimmer interface. This pocket was large enough to accommodate the reaction product and it was postulated that this is the active site.; GO: 0003824 catalytic activity, 0044237 cellular metabolic process; PDB: 2PFD_C 1O5H_B.
Probab=39.75 E-value=1.2e+02 Score=25.07 Aligned_cols=45 Identities=13% Similarity=0.218 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 16 LTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 16 l~I~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
+.-++.|+.++|.+-..+ |-..+++|..++++++++.++++++++
T Consensus 22 aaAl~gAlgaaL~~Mv~~--lT~gkk~~~~~~~~~~~~~~~~~~~~~ 66 (184)
T PF04961_consen 22 AAALSGALGAALGSMVAN--LTLGKKKYEDVEEELKEIIEKLEELRE 66 (184)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTTSTTSGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HhCCCccchhHHHHHHHHHHHHHHHHH
Confidence 344556666666643333 334788888888787777777776665
No 161
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.42 E-value=45 Score=34.21 Aligned_cols=14 Identities=14% Similarity=0.532 Sum_probs=10.2
Q ss_pred cchhHHHHHHHHHH
Q 029363 39 RTNSYKTLKSSIDK 52 (194)
Q Consensus 39 r~e~y~klq~~~~~ 52 (194)
|+|+|.|=|.|+++
T Consensus 318 rkeNy~kGqaELer 331 (1118)
T KOG1029|consen 318 RKENYEKGQAELER 331 (1118)
T ss_pred hHHhHhhhhHHHHH
Confidence 67788777777755
No 162
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=39.23 E-value=62 Score=29.59 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 029363 41 NSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke 62 (194)
.+|.||+.|++++.+++++.+.
T Consensus 94 ~kl~RL~~Ev~EL~eEl~~~~~ 115 (388)
T PF04912_consen 94 QKLQRLRREVEELKEELEKRKA 115 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 5799999999999999999877
No 163
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=39.02 E-value=70 Score=29.43 Aligned_cols=22 Identities=5% Similarity=0.265 Sum_probs=16.6
Q ss_pred hhhHHhHHHHHHHHHHhhhhhh
Q 029363 73 SKTKKIDRVETSLKESSRDLSL 94 (194)
Q Consensus 73 ~~~kkler~e~el~~~~~el~~ 94 (194)
+-++++.|+.+|+.+|.-.++.
T Consensus 332 ~IKqAl~kLk~EI~qMdvrIGV 353 (359)
T PF10498_consen 332 KIKQALTKLKQEIKQMDVRIGV 353 (359)
T ss_pred HHHHHHHHHHHHHHHhhhhhhe
Confidence 5677788888888888766654
No 164
>PF08390 TRAM1: TRAM1-like protein; InterPro: IPR013599 This family comprises sequences that are similar to human TRAM1 (Q15629 from SWISSPROT). This is a transmembrane protein of the endoplasmic reticulum, thought to be involved in the membrane transfer of secretory proteins []. The region featured in this family is found N-terminal to the longevity-assurance protein region (IPR005547 from INTERPRO).
Probab=38.90 E-value=44 Score=23.05 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=20.6
Q ss_pred CCcchHHHHHHHHHHhhHHHHHHH
Q 029363 147 ATDCSMAFLYFLCSISIRTNLQKF 170 (194)
Q Consensus 147 ~tdcs~if~Y~Lcsm~~r~~iqKl 170 (194)
..|..+++.|+++...+|..++..
T Consensus 26 ~~D~~fV~fy~i~~t~lRa~~m~y 49 (65)
T PF08390_consen 26 WDDLYFVFFYIIVFTFLRAFLMEY 49 (65)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 337999999999999999998764
No 165
>PF05366 Sarcolipin: Sarcolipin; InterPro: IPR008028 Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase activity in skeletal muscle [].; GO: 0030234 enzyme regulator activity, 0016020 membrane; PDB: 1JDM_A.
Probab=38.66 E-value=42 Score=20.01 Aligned_cols=23 Identities=30% Similarity=0.684 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhhccchhH
Q 029363 20 GISFCTAIICESISWLLIYRTNSY 43 (194)
Q Consensus 20 ~ia~~t~l~se~ls~~LVyr~e~y 43 (194)
++-....+++.++-|+|| |+-+|
T Consensus 9 ~lnftvvlitvilmwllv-rsyqy 31 (31)
T PF05366_consen 9 FLNFTVVLITVILMWLLV-RSYQY 31 (31)
T ss_dssp HHHHHHHHHHHHHHHHHT-TS---
T ss_pred HHhhhHHHHHHHHHHHHH-HhhcC
Confidence 455566677888999998 76443
No 166
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=38.65 E-value=94 Score=28.94 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 029363 41 NSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke 62 (194)
++++++++++++++++++++++
T Consensus 334 ~~~~~l~~~~~~~~~~l~~l~~ 355 (451)
T PF03961_consen 334 EKLEELEEELEELKEELEKLKK 355 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555444444444443
No 167
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=38.33 E-value=1.1e+02 Score=24.37 Aligned_cols=23 Identities=17% Similarity=0.344 Sum_probs=12.7
Q ss_pred hhhHHhHHHHHHHHHHhhhhhhh
Q 029363 73 SKTKKIDRVETSLKESSRDLSLF 95 (194)
Q Consensus 73 ~~~kkler~e~el~~~~~el~~~ 95 (194)
.-...+++++++..++...|...
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666655555443
No 168
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=37.91 E-value=2e+02 Score=22.64 Aligned_cols=6 Identities=17% Similarity=0.335 Sum_probs=2.5
Q ss_pred HHHHHh
Q 029363 31 SISWLL 36 (194)
Q Consensus 31 ~ls~~L 36 (194)
++.|++
T Consensus 17 ~l~~~~ 22 (159)
T PRK09173 17 LVVYLK 22 (159)
T ss_pred HHHHHH
Confidence 344443
No 169
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=37.87 E-value=66 Score=25.03 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 029363 42 SYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 42 ~y~klq~~~~~~~kkl~k~ke 62 (194)
.+++++++++..++++++..+
T Consensus 44 ~~~~~~~~l~~~~~el~~~~~ 64 (158)
T PF03938_consen 44 KFKALQKELQAKQKELQKLQQ 64 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544
No 170
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=37.83 E-value=56 Score=24.58 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhh
Q 029363 41 NSYKTLKSSIDKASKKLETMKIE 63 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke~ 63 (194)
+.|++|++++++..++..++..+
T Consensus 22 ~EYk~L~~~v~~v~~~f~~L~~~ 44 (101)
T PF07303_consen 22 DEYKELHAEVDAVSRRFQELDSE 44 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999988887777663
No 171
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=37.78 E-value=1.8e+02 Score=22.15 Aligned_cols=35 Identities=14% Similarity=0.287 Sum_probs=25.6
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 28 ICESISWLLIYRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 28 ~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
+..+..|+...--..|..++..+...+++++++++
T Consensus 37 ~f~~~~~~g~~~~~~~~~l~~qi~~~~~e~~~L~~ 71 (117)
T COG2919 37 LFQYLAWFGKNGAADVLQLQRQIAAQQAELEKLSA 71 (117)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566777766666777888888888888888777
No 172
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=37.72 E-value=63 Score=33.76 Aligned_cols=54 Identities=7% Similarity=0.101 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhCCCcccc-ch-------hhhHHhHHHHHHHHHHhhhhhhhhh
Q 029363 43 YKTLKSSIDKASKKLETMKIENPAKIST-KK-------SKTKKIDRVETSLKESSRDLSLFKF 97 (194)
Q Consensus 43 y~klq~~~~~~~kkl~k~ke~~~~~~~~-~k-------~~~kkler~e~el~~~~~el~~~k~ 97 (194)
-.|+.++++++++++++++. +.++.+- ++ +..+++++.++++.++..++...+.
T Consensus 844 ~~rLekel~kl~Kel~kl~~-~L~n~~f~~kap~~~veka~~kl~~~~~~l~~le~~l~~L~~ 905 (1052)
T PRK14900 844 TARVDKEIGKVDQDLAVLER-KLQNPSFVQNAPPAVVEKDRARAEELREKRGKLEAHRAMLSG 905 (1052)
T ss_pred HhhHHHHHHHHHHHHHHHHH-HhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45777888888888888777 3222221 11 4556667777777778777776653
No 173
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=37.70 E-value=55 Score=18.52 Aligned_cols=20 Identities=15% Similarity=0.370 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 029363 42 SYKTLKSSIDKASKKLETMK 61 (194)
Q Consensus 42 ~y~klq~~~~~~~kkl~k~k 61 (194)
.+.+++.++.++..+|++-.
T Consensus 2 E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECR 21 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 46778888888888877644
No 174
>PRK01919 tatB sec-independent translocase; Provisional
Probab=37.53 E-value=1.4e+02 Score=24.88 Aligned_cols=16 Identities=13% Similarity=0.079 Sum_probs=10.8
Q ss_pred ccccchhhHHHHHHHH
Q 029363 10 LKYSDSLTVVGISFCT 25 (194)
Q Consensus 10 ~~~~d~l~I~~ia~~t 25 (194)
+-...+++|+++|++.
T Consensus 4 IG~~ElliI~VVALiV 19 (169)
T PRK01919 4 LGLSKLALIGVVALVV 19 (169)
T ss_pred CcHHHHHHHHHHHHhe
Confidence 4455677888777765
No 175
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=37.28 E-value=1.1e+02 Score=19.55 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=15.4
Q ss_pred hhHHHHHHHH-HHHHHHHHHhhh
Q 029363 41 NSYKTLKSSI-DKASKKLETMKI 62 (194)
Q Consensus 41 e~y~klq~~~-~~~~kkl~k~ke 62 (194)
.++.+++.++ ++..+++.|+|+
T Consensus 3 ~dle~~KqEIL~EvrkEl~K~K~ 25 (40)
T PF08776_consen 3 SDLERLKQEILEEVRKELQKVKE 25 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666554 777888888777
No 176
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=37.00 E-value=49 Score=23.68 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=15.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhh
Q 029363 39 RTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 39 r~e~y~klq~~~~~~~kkl~k~ke 62 (194)
.+|.|..+++.+.+++++++++.+
T Consensus 48 tREEFd~q~~~L~~~r~kl~~LEa 71 (79)
T PF04380_consen 48 TREEFDAQKAVLARTREKLEALEA 71 (79)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666555
No 177
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=36.91 E-value=47 Score=27.43 Aligned_cols=18 Identities=17% Similarity=0.551 Sum_probs=2.3
Q ss_pred hHHhHHHHHHHHHHhhhh
Q 029363 75 TKKIDRVETSLKESSRDL 92 (194)
Q Consensus 75 ~kkler~e~el~~~~~el 92 (194)
..+.||+.+|+.++..|+
T Consensus 30 ~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 30 REEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456777777777777777
No 178
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=36.81 E-value=91 Score=28.12 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 029363 42 SYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 42 ~y~klq~~~~~~~kkl~k~ke 62 (194)
+.+|-+.++++.+|++++++.
T Consensus 141 Kierrk~ElEr~rkRle~Lqs 161 (338)
T KOG3647|consen 141 KIERRKAELERTRKRLEALQS 161 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555555544
No 179
>PF08182 Pedibin: Pedibin/Hym-346 family; InterPro: IPR012594 This family consists of the pedibin and Hym-346 signalling peptides. These two peptides have been isolated from Hydra attenuata (Hydra) (Hydra vulgaris) and Hydra magnipapillata (Hydra). Experiments have indicated that both cause a reduction in the positional value gradient, the principle patterning process governing the maintenance of form in the adult hydra. The peptides cause an increase in the rate of foot regeneration following bisection of the body column. Thus both play important signalling roles in patterning processes in cnidaria and maybe in more complex metazoans [].
Probab=36.19 E-value=68 Score=19.90 Aligned_cols=31 Identities=23% Similarity=0.241 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHH
Q 029363 46 LKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKE 87 (194)
Q Consensus 46 lq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~ 87 (194)
|++++.-+|..+-+=.+ ..+.+|+.+.+|.+
T Consensus 2 L~~EI~~Lq~~~a~Ged-----------v~~~LE~Kek~L~n 32 (35)
T PF08182_consen 2 LCAEIDVLQIQLADGED-----------VCKELEQKEKELSN 32 (35)
T ss_pred HHHHHHHHHHHHhcchh-----------HHHHHHHHHHHHHh
Confidence 66777777776644222 26678888877765
No 180
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=35.95 E-value=2.4e+02 Score=22.89 Aligned_cols=18 Identities=11% Similarity=0.170 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 029363 45 TLKSSIDKASKKLETMKI 62 (194)
Q Consensus 45 klq~~~~~~~kkl~k~ke 62 (194)
|-.+++++++-++++.++
T Consensus 26 ~~~~km~~i~P~~~~i~~ 43 (181)
T TIGR03592 26 KSMRKMQELQPKLKEIQE 43 (181)
T ss_pred HHHHHHHHhhHHHHHHHH
Confidence 444566667777777666
No 181
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=35.36 E-value=1.3e+02 Score=21.42 Aligned_cols=15 Identities=33% Similarity=0.736 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhhc
Q 029363 24 CTAIICESISWLLIY 38 (194)
Q Consensus 24 ~t~l~se~ls~~LVy 38 (194)
-=|+++.+--|+|+|
T Consensus 11 sQG~fA~LFv~Ll~y 25 (71)
T PF10960_consen 11 SQGIFAVLFVWLLFY 25 (71)
T ss_pred HcCcHHHHHHHHHHH
Confidence 334444444455544
No 182
>PRK11677 hypothetical protein; Provisional
Probab=35.27 E-value=1.9e+02 Score=22.96 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 19 VGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 19 ~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
..+++++-+++-++-+++. |- .-.+. .+..+++++|+++|+
T Consensus 3 W~~a~i~livG~iiG~~~~-R~-~~~~~-~~q~~le~eLe~~k~ 43 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAM-RF-GNRKL-RQQQALQYELEKNKA 43 (134)
T ss_pred HHHHHHHHHHHHHHHHHHH-hh-ccchh-hHHHHHHHHHHHHHH
Confidence 3667777777777777774 53 22222 456777777777666
No 183
>PRK10884 SH3 domain-containing protein; Provisional
Probab=34.46 E-value=2.1e+02 Score=24.28 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 029363 42 SYKTLKSSIDKASKKLETMK 61 (194)
Q Consensus 42 ~y~klq~~~~~~~kkl~k~k 61 (194)
...++++++++++.+++.+.
T Consensus 94 rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555444443
No 184
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=33.99 E-value=2e+02 Score=25.31 Aligned_cols=67 Identities=21% Similarity=0.278 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhCCCcccc---chhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 25 TAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKIST---KKSKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 25 t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~---~k~~~kkler~e~el~~~~~el~~~k 96 (194)
.|++--+|+-+- |-..|-.+++..+++.+++++.+++. +.. -.....+++..+++++.+..+.+..-
T Consensus 114 nAlvRAGLktL~--~v~~~~d~ke~~ee~kekl~E~~~Ek---eeL~~eleele~e~ee~~erlk~le~E~s~Le 183 (290)
T COG4026 114 NALVRAGLKTLQ--RVPEYMDLKEDYEELKEKLEELQKEK---EELLKELEELEAEYEEVQERLKRLEVENSRLE 183 (290)
T ss_pred HHHHHHHHHHHh--ccchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444442 55566666666666666666655411 000 01233445556666666555555443
No 185
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=33.77 E-value=1.3e+02 Score=27.25 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=29.8
Q ss_pred HhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH---------HHHHhhcCccccccCC-cch
Q 029363 77 KIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFG---------LLNSLFEGKVVAKLPF-KPF 131 (194)
Q Consensus 77 kler~e~el~~~~~el~~~k~ksm~~~~l~~i~~f~---------l~~~~f~g~~VakLPF-~pi 131 (194)
|-.|+|.||.. -|......|.++.-.+.+..++ .|++|++..+++-.|| .|+
T Consensus 236 ~T~~lq~qL~~---AL~vQT~IPi~vsf~Pc~~~wy~pif~i~~~~~~n~~~~iAls~FPf~DPl 297 (310)
T PF10319_consen 236 KTKRLQRQLFK---ALIVQTVIPICVSFSPCVLSWYGPIFGIDLGRWNNYFSVIALSAFPFLDPL 297 (310)
T ss_pred hHHHHHHHHHH---HHHHHHHhHHHHhhccHHHHHhHHHHcCChhHHHHHHHHHHHHHccccCch
Confidence 33344445444 2333344565555555544443 6888888888888886 354
No 186
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.56 E-value=79 Score=27.44 Aligned_cols=43 Identities=23% Similarity=0.436 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH-----------hhhhCCCccccch------hhhHHhHHHHHHHHH
Q 029363 44 KTLKSSIDKASKKLET-----------MKIENPAKISTKK------SKTKKIDRVETSLKE 87 (194)
Q Consensus 44 ~klq~~~~~~~kkl~k-----------~ke~~~~~~~~~k------~~~kkler~e~el~~ 87 (194)
++||.++++.-|++.+ ... ...+.-.+| +.-|||||.+++++.
T Consensus 4 RKLQ~Eid~~lKkv~EG~~~F~~i~~K~~~-~~n~~QKEK~E~DLKkEIKKLQR~RdQIK~ 63 (233)
T PF04065_consen 4 RKLQQEIDRTLKKVQEGVEEFDEIYEKVES-ATNQNQKEKLEADLKKEIKKLQRLRDQIKT 63 (233)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHH
No 187
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=33.38 E-value=85 Score=26.86 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 029363 41 NSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke 62 (194)
+.|..++++++.++++.+++.+
T Consensus 132 ~~y~D~~arl~~l~~~~~rl~~ 153 (262)
T PF14257_consen 132 EQYVDLEARLKNLEAEEERLLE 153 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666555544443
No 188
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=33.38 E-value=1.6e+02 Score=23.78 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=8.8
Q ss_pred hHHhHHHHHHHHHH
Q 029363 75 TKKIDRVETSLKES 88 (194)
Q Consensus 75 ~kkler~e~el~~~ 88 (194)
++-++++++.+.+.
T Consensus 115 e~Ll~~vq~~le~~ 128 (139)
T KOG1510|consen 115 EKLLEQVQSLLEDI 128 (139)
T ss_pred HHHHHHHHHHHHHH
Confidence 55666666666663
No 189
>PRK03449 putative inner membrane protein translocase component YidC; Provisional
Probab=33.37 E-value=1.8e+02 Score=26.22 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=9.2
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 029363 40 TNSYKTLKSSIDKASKKLE 58 (194)
Q Consensus 40 ~e~y~klq~~~~~~~kkl~ 58 (194)
+.+++++|-+++++++|.+
T Consensus 58 ~~km~~lqP~l~~iq~kyk 76 (304)
T PRK03449 58 TRKMQELQPQIKALQKKYG 76 (304)
T ss_pred HHHHHHccHHHHHHHHHhh
Confidence 3444444555555555444
No 190
>PRK03830 small acid-soluble spore protein Tlp; Provisional
Probab=33.18 E-value=1.2e+02 Score=21.90 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=20.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhh
Q 029363 39 RTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 39 r~e~y~klq~~~~~~~kkl~k~ke 62 (194)
|++.-.|||..+...-+-++++++
T Consensus 7 RsDNVEkLQ~mi~nTieNi~eAee 30 (73)
T PRK03830 7 RSDNVEKLQEMIQNTIENIEEAEE 30 (73)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999998888888877
No 191
>PF06673 L_lactis_ph-MCP: Lactococcus lactis bacteriophage major capsid protein; InterPro: IPR009559 This family consists of several Lactococcus lactis bacteriophage major capsid proteins.
Probab=33.00 E-value=75 Score=27.70 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhCCCccccch
Q 029363 42 SYKTLKSSIDKASKKLETMKIENPAKISTKK 72 (194)
Q Consensus 42 ~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k 72 (194)
+.++|.+.++++.|+++++|+++....+++|
T Consensus 19 kvreleakveelnkereelkkereanipsek 49 (347)
T PF06673_consen 19 KVRELEAKVEELNKEREELKKEREANIPSEK 49 (347)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Confidence 4567888889999999998887655444443
No 192
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=32.90 E-value=1.2e+02 Score=30.31 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=24.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHh
Q 029363 40 TNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESS 89 (194)
Q Consensus 40 ~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~ 89 (194)
+.+|-+.+++++.+|+++-+.+- +=.+.+||+|+|-+++.
T Consensus 225 ~K~~vs~~e~i~~LQeE~l~tQ~----------kYQreLErlEKENkeLr 264 (980)
T KOG0447|consen 225 QKRKVSDKEKIDQLQEELLHTQL----------KYQRILERLEKENKELR 264 (980)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhHHHH
Confidence 34556677777777777766544 12456666666655544
No 193
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=32.46 E-value=1.1e+02 Score=31.74 Aligned_cols=58 Identities=9% Similarity=0.123 Sum_probs=39.4
Q ss_pred ccchhHHHHHHHHHHHHH--------HHHHhhhhCCCccccch--hhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 38 YRTNSYKTLKSSIDKASK--------KLETMKIENPAKISTKK--SKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 38 yr~e~y~klq~~~~~~~k--------kl~k~ke~~~~~~~~~k--~~~kkler~e~el~~~~~el~~~k 96 (194)
.-.|.|.+|++|++.+.. ++.+|.+ -|+=.++.. ..+++..++|.++.++.++|...+
T Consensus 752 lT~eg~~kL~~EL~~L~~v~Rpei~~~I~~Ar~-~GDLsENaEY~aAKe~q~~le~RI~eLe~~L~~A~ 819 (906)
T PRK14720 752 VTRRALNKKKKELEHLKDVEMPENSKDIGEAQE-LGDLRENAEYKAAKEKQQQLQAALKRLEAEIDSAK 819 (906)
T ss_pred eCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-CCCcccchhhHHHHHHHHHHHHHHHHHHHHHhcCE
Confidence 467899999999988753 4455555 343211221 456667788888888888887766
No 194
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=32.39 E-value=86 Score=26.39 Aligned_cols=15 Identities=27% Similarity=0.457 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhhh
Q 029363 48 SSIDKASKKLETMKI 62 (194)
Q Consensus 48 ~~~~~~~kkl~k~ke 62 (194)
++++++.+++++++.
T Consensus 182 ~~i~~L~kei~~L~~ 196 (221)
T PF14335_consen 182 EQIEKLEKEIAKLKK 196 (221)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 195
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=32.37 E-value=1.8e+02 Score=22.02 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=24.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 14 DSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 14 d~l~I~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
|+.|--.+=-+|++=+.++++. ++....+...+.+|.+|...+|
T Consensus 31 DsaVqsLF~~lt~mH~~LL~~i-----~~~ee~R~~~E~lQdkL~qi~e 74 (96)
T PF12210_consen 31 DSAVQSLFQTLTAMHPQLLKYI-----QEQEEKRVYYEGLQDKLAQIKE 74 (96)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555544 3444555555666777776666
No 196
>PRK11020 hypothetical protein; Provisional
Probab=32.35 E-value=1.1e+02 Score=23.90 Aligned_cols=25 Identities=8% Similarity=0.157 Sum_probs=21.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 38 YRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 38 yr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
=|.+.+.++.+|++.+.++++..|.
T Consensus 28 gd~~~i~qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 28 GDAEKYAQFEKEKATLEAEIARLKE 52 (118)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888899999999999988887
No 197
>PRK09039 hypothetical protein; Validated
Probab=32.28 E-value=78 Score=28.71 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHH-H---hhhhhhhhhhhhHHHH
Q 029363 41 NSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKE-S---SRDLSLFKFKSGAVVA 104 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~-~---~~el~~~k~ksm~~~~ 104 (194)
.+..+|+.+++.+++++..++++-.+.+..++.+..+++.++.++.. + ..+|.. +|+-|.--
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~--~~~~~~~~ 202 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNR--YRSEFFGR 202 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHH
Confidence 34556666666666655555542122222345667788888888877 3 334443 55665433
No 198
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=32.26 E-value=2.2e+02 Score=26.56 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=12.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHhh
Q 029363 39 RTNSYKTLKSSIDKASKKLETMK 61 (194)
Q Consensus 39 r~e~y~klq~~~~~~~kkl~k~k 61 (194)
.+....+.+.+...++.+++..+
T Consensus 58 ~~qq~~~~~~~~~~L~~ql~~~~ 80 (390)
T PRK10920 58 GKQQAQNQTATNDALANQLTALQ 80 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555656666666655543
No 199
>PRK09609 hypothetical protein; Provisional
Probab=32.08 E-value=1.7e+02 Score=26.56 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhhccchhHH-HHHHHHHHHHHHHHHhhh
Q 029363 22 SFCTAIICESISWLLIYRTNSYK-TLKSSIDKASKKLETMKI 62 (194)
Q Consensus 22 a~~t~l~se~ls~~LVyr~e~y~-klq~~~~~~~kkl~k~ke 62 (194)
+.++|++.-+.-|++ |+.-++- ..+.+.++..++.+..|+
T Consensus 86 a~l~GlI~Glf~~~~-fk~~~~~f~~~~~~~~~~~~i~~~~~ 126 (312)
T PRK09609 86 AMVYGFIPGIVGWFF-FKFGKKFFGKESRIKRYDNKIFKQKE 126 (312)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 446666666677777 4544433 446667777778877777
No 200
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=32.02 E-value=1.3e+02 Score=20.71 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 029363 17 TVVGISFCTAIICESISWLL 36 (194)
Q Consensus 17 ~I~~ia~~t~l~se~ls~~L 36 (194)
+|..+.++...++-++.+.+
T Consensus 12 Vi~l~vl~~~~Ftl~IRri~ 31 (58)
T PF13314_consen 12 VIILIVLFGASFTLFIRRIL 31 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455554
No 201
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=31.95 E-value=2.1e+02 Score=21.49 Aligned_cols=20 Identities=10% Similarity=0.360 Sum_probs=11.3
Q ss_pred ccchhHHHHHHHHHHHHHHH
Q 029363 38 YRTNSYKTLKSSIDKASKKL 57 (194)
Q Consensus 38 yr~e~y~klq~~~~~~~kkl 57 (194)
|-...+.+|+++.+...+-+
T Consensus 22 ~qs~~i~~L~a~n~~q~~tI 41 (110)
T PF10828_consen 22 YQSQRIDRLRAENKAQAQTI 41 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555666666665544433
No 202
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=31.91 E-value=1.2e+02 Score=24.66 Aligned_cols=9 Identities=22% Similarity=0.667 Sum_probs=3.8
Q ss_pred hHHHHHHHH
Q 029363 42 SYKTLKSSI 50 (194)
Q Consensus 42 ~y~klq~~~ 50 (194)
+|+.+++.+
T Consensus 50 ~Y~~~k~~L 58 (155)
T PF08496_consen 50 RYEDMKEQL 58 (155)
T ss_pred HHHHHHHHH
Confidence 344444444
No 203
>PF02949 7tm_6: 7tm Odorant receptor; InterPro: IPR004117 All known members of this group are seven-transmembrane proteins that are candidate odorant receptors in Drosophila.; GO: 0004984 olfactory receptor activity, 0005549 odorant binding, 0007608 sensory perception of smell, 0016020 membrane
Probab=31.90 E-value=2.9e+02 Score=22.70 Aligned_cols=21 Identities=10% Similarity=0.252 Sum_probs=11.7
Q ss_pred HHHhhccchhHHHHHHHHHHH
Q 029363 33 SWLLIYRTNSYKTLKSSIDKA 53 (194)
Q Consensus 33 s~~LVyr~e~y~klq~~~~~~ 53 (194)
.+.+++++++++++.+.+++.
T Consensus 22 ~~~~~~~r~~~~~l~~~l~~~ 42 (313)
T PF02949_consen 22 LIIFLLNRKKLKELIDKLEEL 42 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445666666666555443
No 204
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=31.90 E-value=2.9e+02 Score=24.04 Aligned_cols=35 Identities=11% Similarity=0.245 Sum_probs=16.1
Q ss_pred hHHhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 029363 75 TKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVF 111 (194)
Q Consensus 75 ~kkler~e~el~~~~~el~~~k~ksm~~~~l~~i~~f 111 (194)
.|.+++-++=..|+++++.. .|.+++. .++.++++
T Consensus 71 ~kl~~kD~el~~E~~~~~k~-~~~~ll~-~~i~ii~~ 105 (233)
T PF09973_consen 71 NKLMEKDKELQKEYKKQMKA-SMMNLLI-LPIYIILF 105 (233)
T ss_pred HHHHHhCHHHHHHHHHHHHH-HHHHHHH-HHHHHHHH
Confidence 34444444444446665532 3444444 44444444
No 205
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=31.76 E-value=1.2e+02 Score=28.71 Aligned_cols=38 Identities=26% Similarity=0.216 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 25 TAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 25 t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
.|++.|+-+-+=|.++|+|+--+.-.+-++.=++..+.
T Consensus 372 gAII~EL~~Eiki~N~e~y~~s~~w~q~lt~Ller~q~ 409 (510)
T KOG2470|consen 372 GAIIPELEREIKIQNTEQYRFSQTWLQILTGLLERMQA 409 (510)
T ss_pred ccchHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36778888888889999999888888888888888777
No 206
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=31.56 E-value=97 Score=26.07 Aligned_cols=12 Identities=42% Similarity=0.733 Sum_probs=0.0
Q ss_pred CCCCCCCCcchH
Q 029363 141 GLQGDDATDCSM 152 (194)
Q Consensus 141 gL~G~d~tdcs~ 152 (194)
.|.|+---.|+|
T Consensus 168 PL~G~~ggs~~w 179 (190)
T PF06936_consen 168 PLTGDGGGSCSW 179 (190)
T ss_dssp ------------
T ss_pred CCCCCCCCCCcc
Confidence 333443333555
No 207
>PF14127 DUF4294: Domain of unknown function (DUF4294)
Probab=31.51 E-value=1.1e+02 Score=25.09 Aligned_cols=55 Identities=29% Similarity=0.442 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHH-------HHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHH-Hhhhhhhhh
Q 029363 41 NSYKTLKSSIDK-------ASKKLETMKIENPAKISTKKSKTKKIDRVETSLKE-SSRDLSLFK 96 (194)
Q Consensus 41 e~y~klq~~~~~-------~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~-~~~el~~~k 96 (194)
..|.+|+.++.+ +.+++.+..+ ...+-++++++++=+.+.|+++++ ...+|-...
T Consensus 27 ~~Y~~L~~~vkkVyPyAk~a~~~l~e~~~-~l~~l~~kk~kkky~K~vek~i~~ef~~~lKkLT 89 (157)
T PF14127_consen 27 RRYNRLRRNVKKVYPYAKEAAERLIELNE-YLETLPNKKAKKKYIKRVEKYIKEEFTPELKKLT 89 (157)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555543 3445555444 323233455566667788888877 666665444
No 208
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.40 E-value=1.6e+02 Score=23.13 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHH----Hhhhhhhhh-------hhhhHHHHHHHHHHHHHHH
Q 029363 47 KSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKE----SSRDLSLFK-------FKSGAVVALVLFVVFGLLN 115 (194)
Q Consensus 47 q~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~----~~~el~~~k-------~ksm~~~~l~~i~~f~l~~ 115 (194)
.+.++.++.|+..+|+-..+=...-+.+.|-+++....... ++.-+..+| .+-+.|.++.+++.|.++-
T Consensus 35 ee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~sg~~l~~~m~~f~lV~~fi~~ 114 (118)
T KOG3385|consen 35 EEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARRSGISLLCWMAVFSLVAFFILW 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh
Confidence 34557788888888873211000112345556665555443 222222222 3345566666666664444
Q ss_pred Hh
Q 029363 116 SL 117 (194)
Q Consensus 116 ~~ 117 (194)
+|
T Consensus 115 ~~ 116 (118)
T KOG3385|consen 115 VW 116 (118)
T ss_pred ee
Confidence 33
No 209
>PLN02381 valyl-tRNA synthetase
Probab=31.38 E-value=1e+02 Score=32.38 Aligned_cols=53 Identities=13% Similarity=0.255 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhCCCccc-cch-------hhhHHhHHHHHHHHHHhhhhhhh
Q 029363 42 SYKTLKSSIDKASKKLETMKIENPAKIS-TKK-------SKTKKIDRVETSLKESSRDLSLF 95 (194)
Q Consensus 42 ~y~klq~~~~~~~kkl~k~ke~~~~~~~-~~k-------~~~kkler~e~el~~~~~el~~~ 95 (194)
.-.||+++++++++++++.+. +.++++ .++ +..+|++..++++..+...+...
T Consensus 998 E~~rL~K~l~klekei~~~~~-kLsN~~F~~KAP~~vve~e~~kl~~~~~~l~~l~~~l~~l 1058 (1066)
T PLN02381 998 ELEKLRNKMDEIQKQQEKLEK-KMNASGYKEKVPANIQEEDARKLTKLLQELEFFEKESKRL 1058 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-hhcCCchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777666 433222 112 44455566666666665555443
No 210
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=31.35 E-value=1.3e+02 Score=26.49 Aligned_cols=16 Identities=25% Similarity=0.559 Sum_probs=7.3
Q ss_pred chhHHHHHHHHHHHHH
Q 029363 40 TNSYKTLKSSIDKASK 55 (194)
Q Consensus 40 ~e~y~klq~~~~~~~k 55 (194)
++.|..++..++++++
T Consensus 134 ke~~ee~kekl~E~~~ 149 (290)
T COG4026 134 KEDYEELKEKLEELQK 149 (290)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445455444444444
No 211
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=31.29 E-value=1.5e+02 Score=26.14 Aligned_cols=19 Identities=26% Similarity=0.393 Sum_probs=14.8
Q ss_pred hhHHhHHHHHHHHHHhhhh
Q 029363 74 KTKKIDRVETSLKESSRDL 92 (194)
Q Consensus 74 ~~kkler~e~el~~~~~el 92 (194)
-++-|+|.|+|+.++.+++
T Consensus 237 ~de~I~rEeeEIreLE~k~ 255 (259)
T PF08657_consen 237 TDEDIRREEEEIRELERKK 255 (259)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3567889999988877765
No 212
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=30.83 E-value=3.2e+02 Score=23.77 Aligned_cols=20 Identities=15% Similarity=0.428 Sum_probs=12.4
Q ss_pred hhHHhHHHHHHHHHHhhhhhh
Q 029363 74 KTKKIDRVETSLKESSRDLSL 94 (194)
Q Consensus 74 ~~kkler~e~el~~~~~el~~ 94 (194)
+.+++|+.++...++++- +.
T Consensus 38 ~~~~~~e~~~kaeeaqK~-Gi 57 (306)
T PF04888_consen 38 KAEEIEEAQEKAEEAQKA-GI 57 (306)
T ss_pred HHHHHHHHHHHHHHHHhc-Ch
Confidence 355666666666666666 44
No 213
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=30.62 E-value=3e+02 Score=23.06 Aligned_cols=118 Identities=9% Similarity=0.079 Sum_probs=0.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhh
Q 029363 11 KYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSR 90 (194)
Q Consensus 11 ~~~d~l~I~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~ 90 (194)
+..+....+..+..+.+++.++...+.+-..+..=...-.+..++..+...+ ... +.-..+.+.+..+.+-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~--------~~g~~~~~~~~~~~~~ 150 (290)
T PF09991_consen 80 KKRSWSRSILAGTLASLLGVLVFFLLLAYLSGINIFEQLIEQIQESIEQVLK-IYS--------QSGLPQDQVDQLQKNL 150 (290)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH-HHH--------HcCCCchhHHHHHHHH
Q ss_pred hhhhhhhhhhHHHHHHHHHHHH-HHHHhhcCccccccCCc--chHHHHHH
Q 029363 91 DLSLFKFKSGAVVALVLFVVFG-LLNSLFEGKVVAKLPFK--PFGIVMKM 137 (194)
Q Consensus 91 el~~~k~ksm~~~~l~~i~~f~-l~~~~f~g~~VakLPF~--pi~~~~~~ 137 (194)
|-....++.++-..+....++. +++++...+...+.-.. +.++++++
T Consensus 151 ~~~~~~~~~~~P~~~~i~~~~~~~~~~~l~~~il~r~~~~~~~~~~~~~~ 200 (290)
T PF09991_consen 151 QQIAELIKRLFPALLIISALLMSLINYYLARRILRRLGIPIPPLPPFREW 200 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchHHH
No 214
>PRK10884 SH3 domain-containing protein; Provisional
Probab=30.58 E-value=89 Score=26.48 Aligned_cols=12 Identities=17% Similarity=0.415 Sum_probs=4.5
Q ss_pred HHHHHHHHhhhh
Q 029363 81 VETSLKESSRDL 92 (194)
Q Consensus 81 ~e~el~~~~~el 92 (194)
++.++.+.+++.
T Consensus 158 l~~~~~~~~~~~ 169 (206)
T PRK10884 158 ANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 215
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=30.39 E-value=75 Score=32.29 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 029363 44 KTLKSSIDKASKKLETMKIE 63 (194)
Q Consensus 44 ~klq~~~~~~~kkl~k~ke~ 63 (194)
-...++.++++|++++++.+
T Consensus 807 id~~~e~~rL~K~l~kl~~e 826 (874)
T PRK05729 807 IDVEAELARLEKELAKLEKE 826 (874)
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888873
No 216
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=30.33 E-value=90 Score=30.48 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 029363 41 NSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke 62 (194)
+.+++++++++++++++++++.
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~ 442 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEA 442 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554443
No 217
>PF15062 ARL6IP6: Haemopoietic lineage transmembrane helix
Probab=30.30 E-value=36 Score=25.19 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 029363 18 VVGISFCTAIICESISWLLIYR 39 (194)
Q Consensus 18 I~~ia~~t~l~se~ls~~LVyr 39 (194)
-.+.++++|++++..+|.+||=
T Consensus 25 ~~~~~ll~Gllv~~Ft~~ivYl 46 (85)
T PF15062_consen 25 SLLSSLLCGLLVCSFTWTIVYL 46 (85)
T ss_pred HHHHHHHHHHHHHHhhheeEEe
Confidence 3678999999999999999973
No 218
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=30.27 E-value=1.5e+02 Score=25.90 Aligned_cols=55 Identities=20% Similarity=0.261 Sum_probs=34.2
Q ss_pred HHhhccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhh
Q 029363 34 WLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDL 92 (194)
Q Consensus 34 ~~LVyr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el 92 (194)
.+|+-+.+.|++|-+...+.+|+-+..+.-+ ..-++.++.++++|+.|++...=|
T Consensus 50 ~Ll~~kd~ef~~llkla~eq~k~e~~m~~Le----a~VEkrD~~IQqLqk~LK~aE~iL 104 (272)
T KOG4552|consen 50 KLLDSKDDEFKTLLKLAPEQQKREQLMRTLE----AHVEKRDEVIQQLQKNLKSAEVIL 104 (272)
T ss_pred HHHHhccHHHHHHHHHhHhHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4677788888888777777666444333200 001245777888888888754433
No 219
>PRK11637 AmiB activator; Provisional
Probab=30.21 E-value=1.2e+02 Score=28.01 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHhhhh
Q 029363 78 IDRVETSLKESSRDL 92 (194)
Q Consensus 78 ler~e~el~~~~~el 92 (194)
++++++++.+..+++
T Consensus 105 i~~l~~eI~~~q~~l 119 (428)
T PRK11637 105 IDELNASIAKLEQQQ 119 (428)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 220
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.74 E-value=1.9e+02 Score=25.40 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=17.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhC
Q 029363 39 RTNSYKTLKSSIDKASKKLETMKIEN 64 (194)
Q Consensus 39 r~e~y~klq~~~~~~~kkl~k~ke~~ 64 (194)
|++.. +|.++..++|+++.+++.|.
T Consensus 49 ~~r~~-~L~~e~~s~Q~~~~~L~~ev 73 (247)
T COG3879 49 RARDL-DLVKELRSLQKKVNTLAAEV 73 (247)
T ss_pred hhhhh-HHHHHHHHHHHHHHHHHHHH
Confidence 44444 77778888888888877743
No 221
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=29.74 E-value=2.1e+02 Score=21.51 Aligned_cols=48 Identities=25% Similarity=0.359 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhh
Q 029363 44 KTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLF 95 (194)
Q Consensus 44 ~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~ 95 (194)
++.+++...+++++++.++ ... .=.+-.+++++.+.++.++.+.+-..
T Consensus 2 ~~~~~~~~~l~~~~~~~~~-~~~---~l~~~~~~~~~~~~~l~~~~~~lP~~ 49 (144)
T PF04350_consen 2 KTLQAQIQQLQQELAQLKE-KVA---NLEELKKQLEQLEQQLEELLKKLPAE 49 (144)
T ss_dssp ----------HHHHHHTGG-G-S---SHHHHHHHHHHHHHHHHHHHHCTTGG
T ss_pred hhHHHHHHHHHHHHHHHHH-HHH---hHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3456677777777777665 211 01122344555555555555544433
No 222
>PF14479 HeLo: Prion-inhibition and propagation; PDB: 2WVQ_A 2WVN_A 2WVO_A.
Probab=29.67 E-value=38 Score=27.66 Aligned_cols=32 Identities=16% Similarity=0.432 Sum_probs=23.8
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 30 ESISWLLIYRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 30 e~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
.=+.|.+ ||+++++++-+++..+...|+++=.
T Consensus 150 ~r~~Wai-~Dk~~F~~lI~~l~~~~d~L~~l~p 181 (212)
T PF14479_consen 150 KRARWAI-YDKEKFERLIEDLRDLNDSLENLFP 181 (212)
T ss_dssp ----EEE--SHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccceeee-cchHHHHHHHHHHHHHHHHHHHHcC
Confidence 4567887 8999999999999999999888543
No 223
>PHA02047 phage lambda Rz1-like protein
Probab=29.66 E-value=2.6e+02 Score=21.36 Aligned_cols=18 Identities=11% Similarity=0.381 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 029363 45 TLKSSIDKASKKLETMKI 62 (194)
Q Consensus 45 klq~~~~~~~kkl~k~ke 62 (194)
-.+++.+++..++|.++.
T Consensus 31 ~~h~~a~~la~qLE~a~~ 48 (101)
T PHA02047 31 IAHEEAKRQTARLEALEV 48 (101)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 458889999999999887
No 224
>PF08663 HalX: HalX domain; InterPro: IPR013971 HalX is a protein of unknown function, previously mis-annotated as HoxA-like transcriptional regulator. It is C-terminal to a CheY-like superfamily domain and suggests a role as a response regulator.
Probab=29.54 E-value=74 Score=22.56 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=24.2
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 32 ISWLLIYRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 32 ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
-..-| =+++.|+.|+++++++..+++..-+
T Consensus 28 ~~~eL-~~seeY~eL~~ri~~lr~~ld~~~~ 57 (71)
T PF08663_consen 28 SEAEL-EESEEYQELEDRIEELRAELDDTLD 57 (71)
T ss_pred CHHHH-hccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445 3889999999999999999988766
No 225
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=28.68 E-value=4.8e+02 Score=25.68 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=25.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhcC-ccccccCCcchHHHH
Q 029363 97 FKSGAVVALVLFVVFGLLNSLFEG-KVVAKLPFKPFGIVM 135 (194)
Q Consensus 97 ~ksm~~~~l~~i~~f~l~~~~f~g-~~VakLPF~pi~~~~ 135 (194)
++++++..++++.+| |-+|-.+ ..+.-+|+-|++.+.
T Consensus 122 ~~~~ivp~~i~i~v~--~~~w~aalIllit~PlIPlfMil 159 (559)
T COG4988 122 FLSAIVPLLILIAIF--FFNWAAALILLITAPLIPLFMIL 159 (559)
T ss_pred HHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666665 5567777 566678998886543
No 226
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=28.66 E-value=1.5e+02 Score=22.93 Aligned_cols=15 Identities=13% Similarity=0.446 Sum_probs=7.6
Q ss_pred hhhHHhHHHHHHHHH
Q 029363 73 SKTKKIDRVETSLKE 87 (194)
Q Consensus 73 ~~~kkler~e~el~~ 87 (194)
+..+++++.+.++..
T Consensus 80 ~~~~~l~~~~~~l~~ 94 (158)
T PF03938_consen 80 KRQQELQQKEQELQQ 94 (158)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555554
No 227
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=28.66 E-value=2.1e+02 Score=23.74 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhC
Q 029363 41 NSYKTLKSSIDKASKKLETMKIEN 64 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke~~ 64 (194)
.+..+++++++++++++++++..+
T Consensus 76 ~~~~~~~~~i~~l~~~i~~~~~~r 99 (188)
T PF03962_consen 76 KEIEELEKKIEELEEKIEEAKKGR 99 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345556666666666666666533
No 228
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=28.50 E-value=4.1e+02 Score=23.40 Aligned_cols=20 Identities=15% Similarity=0.486 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 029363 18 VVGISFCTAIICESISWLLI 37 (194)
Q Consensus 18 I~~ia~~t~l~se~ls~~LV 37 (194)
++...+++++++-++.|+++
T Consensus 155 ~~~~~~~~~l~~~~~~~~~~ 174 (435)
T PRK09467 155 LFRYTLAIGLLSVAGGWLFI 174 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344445555556666664
No 229
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=28.41 E-value=2.5e+02 Score=25.58 Aligned_cols=20 Identities=10% Similarity=0.290 Sum_probs=10.4
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 029363 40 TNSYKTLKSSIDKASKKLET 59 (194)
Q Consensus 40 ~e~y~klq~~~~~~~kkl~k 59 (194)
+.+++++|-+++++++|++.
T Consensus 68 ~~km~~lqPe~~~iq~kyk~ 87 (329)
T PRK01315 68 QRNMQEIQPKMKKIQEKYKG 87 (329)
T ss_pred HHHHHHccHHHHHHHHHHHh
Confidence 33455555555555555544
No 230
>COG2348 Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]
Probab=28.36 E-value=1.3e+02 Score=28.39 Aligned_cols=51 Identities=14% Similarity=0.269 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhh
Q 029363 42 SYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLS 93 (194)
Q Consensus 42 ~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~ 93 (194)
...+|+.+++++...+++.+. ...+.+..+++..++.++++++.-.+.+..
T Consensus 247 ~~~~l~~~l~~~~~~~~r~~~-~l~~~~~~~k~~~~l~~l~~q~~~~~~~~~ 297 (418)
T COG2348 247 YLKKLNQELAKLAAEIERVQE-ALKESPKSEKAQNKLNRLQMQLEAFEERIA 297 (418)
T ss_pred HHHHHHHHHHHHHhHHHHHHH-HhccCcchhhhhhhHHHHHHHHHhhHHHHh
Confidence 344666666666666666555 322122245677788888888887777776
No 231
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=28.27 E-value=73 Score=21.97 Aligned_cols=52 Identities=25% Similarity=0.349 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCccc-----cchhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 45 TLKSSIDKASKKLETMKIENPAKIS-----TKKSKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 45 klq~~~~~~~kkl~k~ke~~~~~~~-----~~k~~~kkler~e~el~~~~~el~~~k 96 (194)
+++.+++++++++++....+.|.++ .+.+..+..+..|.++.+.++++-..+
T Consensus 6 ~~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~~~~~~~~~~~~~l~es~~ki~~Lr 62 (72)
T cd00089 6 KLQSRLERLEKELSIELKVKEGAENLLRLYSDEKKKKLLAEAEQMLRESKQKLELLK 62 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 4566666776666654332211111 011222557777777777666665544
No 232
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=28.23 E-value=3.5e+02 Score=22.48 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=36.3
Q ss_pred hhhHHhHHHHHHHHH-HhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhcCccccccCCcchHHHH
Q 029363 73 SKTKKIDRVETSLKE-SSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGIVM 135 (194)
Q Consensus 73 ~~~kkler~e~el~~-~~~el~~~k~ksm~~~~l~~i~~f~l~~~~f~g~~VakLPF~pi~~~~ 135 (194)
++=.+++|.=+++++ ...+-.-.+.-.-..=.++..+++ .+-.-|.-.++=|+--.|+..+-
T Consensus 70 AkwaRlnRKi~kl~~ele~qs~n~~~q~~~~K~vlSv~f~-vl~~~~~~~~~~K~ss~pv~~~P 132 (175)
T KOG4253|consen 70 AKWARLNRKINKLDKELETQSKNKTAQAHLHKWVLSVAFY-VLKIMYGKTPVYKLSSSPVTLFP 132 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhceeeeecCCceeeec
Confidence 445555555555554 433433333555666665555555 77777777788787767765443
No 233
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=28.22 E-value=29 Score=29.00 Aligned_cols=28 Identities=14% Similarity=0.383 Sum_probs=24.4
Q ss_pred HHhhccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 34 WLLIYRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 34 ~~LVyr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
++|||+..+++.++ +++.+.+++++-|+
T Consensus 88 fVLVYs~~d~eSf~-rv~llKk~Idk~Kd 115 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQ-RVELLKKEIDKHKD 115 (198)
T ss_pred EEEEecCCCHHHHH-HHHHHHHHHhhccc
Confidence 46899999999988 89999999998666
No 234
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=27.76 E-value=1.1e+02 Score=22.74 Aligned_cols=22 Identities=14% Similarity=0.282 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 029363 41 NSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke 62 (194)
.+..+|..+++.++.+.+.+..
T Consensus 24 ~kvdqLss~V~~L~~kvdql~~ 45 (85)
T PRK09973 24 QKVNQLASNVQTLNAKIARLEQ 45 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4777777777777776666655
No 235
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=27.72 E-value=1.7e+02 Score=26.82 Aligned_cols=20 Identities=20% Similarity=0.690 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhHHHHHHHhC
Q 029363 153 AFLYFLCSISIRTNLQKFLG 172 (194)
Q Consensus 153 if~Y~Lcsm~~r~~iqKlLG 172 (194)
..+|+=|++++|.+|-+.=|
T Consensus 157 ~lvwyY~tLtiRE~IL~~NG 176 (330)
T PF07851_consen 157 LLVWYYCTLTIRESILIVNG 176 (330)
T ss_pred HHHHHHHHHHHHHHhhccCC
Confidence 33455799999999876544
No 236
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=27.18 E-value=1.3e+02 Score=27.56 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=13.4
Q ss_pred hhhHHhHHHHHHHHHHhhhhh
Q 029363 73 SKTKKIDRVETSLKESSRDLS 93 (194)
Q Consensus 73 ~~~kkler~e~el~~~~~el~ 93 (194)
...+.++++|+++++.+..+.
T Consensus 65 e~~~~i~~L~~~Ik~r~~~l~ 85 (330)
T PF07851_consen 65 EERELIEKLEEDIKERRCQLF 85 (330)
T ss_pred hHHHHHHHHHHHHHHHHhhHH
Confidence 346667777777777554443
No 237
>PF13907 DUF4208: Domain of unknown function (DUF4208)
Probab=27.12 E-value=2.6e+02 Score=20.63 Aligned_cols=64 Identities=11% Similarity=0.083 Sum_probs=39.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhh----------hhhhhhhhHHHHHH
Q 029363 38 YRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDL----------SLFKFKSGAVVALV 106 (194)
Q Consensus 38 yr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el----------~~~k~ksm~~~~l~ 106 (194)
|+......-++.|.-.++-|++++. . + .+.++ ++++..+..+|..+++.+ ..-+++..+|..+.
T Consensus 10 ~ds~~~~~ck~~m~Pvkk~LkkL~~-~-~-~~l~~--~e~a~~lk~~L~~IG~~I~~~l~~~~~~~~~~l~~~LW~fvs 83 (100)
T PF13907_consen 10 YDSMDEDECKELMRPVKKSLKKLKK-P-K-KGLPR--KERAKILKKELLKIGDFIDSILKEYKDDEPEKLRKHLWSFVS 83 (100)
T ss_pred cCccHHHHHHHHhHHHHHHHHHhcc-C-C-CCCCH--HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 5677778888889999999999888 3 2 22222 244444334443333222 33468888887765
No 238
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=26.87 E-value=1.6e+02 Score=25.13 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 029363 23 FCTAIICESISWLLIYRTNSYKTLKSSID 51 (194)
Q Consensus 23 ~~t~l~se~ls~~LVyr~e~y~klq~~~~ 51 (194)
+++|++ +||.=+-|-.-+.++.+++..
T Consensus 143 vLvGVL--~LQaG~wYAer~~~~~~~~~~ 169 (196)
T smart00786 143 VLVGVL--VLQAGLWYAERKDAKQKEEFA 169 (196)
T ss_pred HHHHHH--HHHhhHHHHHHhHHHHHHHHH
Confidence 344444 455555444434444444443
No 239
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=26.78 E-value=6.3e+02 Score=25.00 Aligned_cols=75 Identities=8% Similarity=0.066 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh-hhhh
Q 029363 22 SFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK-FKSG 100 (194)
Q Consensus 22 a~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k-~ksm 100 (194)
-.+.+.++++++..=+ |+++..++-++++++-.++- -+++.++.|.....-.++++-++-.- .-++
T Consensus 257 T~LmA~l~eLi~~~s~---e~lk~~~el~~klsea~~kd----------~ekKA~Eyee~vrKAEE~qK~mgCvgKIlG~ 323 (593)
T PRK15374 257 TMLMAMFIEIVGKNTE---ESLQNDLALFNALQEGRQAE----------MEKKSAEFQEETRKAEETNRIMGCIGKVLGA 323 (593)
T ss_pred HHHHHHHHHHHhhhhH---hHHHhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3455566666666643 44444433333333321110 11223334444444445666665443 5677
Q ss_pred HHHHHHHHH
Q 029363 101 AVVALVLFV 109 (194)
Q Consensus 101 ~~~~l~~i~ 109 (194)
++|.+.++.
T Consensus 324 vitaVsvvA 332 (593)
T PRK15374 324 LLTIVSVVA 332 (593)
T ss_pred HHHHHHHHH
Confidence 777776665
No 240
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=26.78 E-value=2e+02 Score=23.97 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=13.2
Q ss_pred Hhhhhhhhh------hhhhHHHHHHHHH
Q 029363 88 SSRDLSLFK------FKSGAVVALVLFV 109 (194)
Q Consensus 88 ~~~el~~~k------~ksm~~~~l~~i~ 109 (194)
+.+|+..|. ||.++...+-..+
T Consensus 173 ~k~El~rF~~~r~~dfk~~l~~~~e~~i 200 (216)
T cd07627 173 IKSELERFERERVEDFRNSVEIYLESAI 200 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666665 6666666554443
No 241
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=26.75 E-value=2.2e+02 Score=22.97 Aligned_cols=10 Identities=30% Similarity=0.670 Sum_probs=3.7
Q ss_pred hHHHHHHHHH
Q 029363 78 IDRVETSLKE 87 (194)
Q Consensus 78 ler~e~el~~ 87 (194)
+++++..+..
T Consensus 69 ~~~l~~~~~~ 78 (151)
T PF14584_consen 69 IEELEEKLRN 78 (151)
T ss_pred HHHHHHHHHh
Confidence 3333333333
No 242
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=26.60 E-value=2.8e+02 Score=22.96 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 029363 45 TLKSSIDKASKKLETMKI 62 (194)
Q Consensus 45 klq~~~~~~~kkl~k~ke 62 (194)
+||..+-+++.++.+.|+
T Consensus 84 ~LKq~ln~I~rkl~~ik~ 101 (165)
T PF11286_consen 84 QLKQLLNKIYRKLHKIKA 101 (165)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678888888888877665
No 243
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.52 E-value=3.7e+02 Score=23.33 Aligned_cols=58 Identities=10% Similarity=0.178 Sum_probs=25.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhhCCCccc-cchhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 38 YRTNSYKTLKSSIDKASKKLETMKIENPAKIS-TKKSKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 38 yr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~-~~k~~~kkler~e~el~~~~~el~~~k 96 (194)
.++|...+--.++++-+...-+-.. -|...- +=..|.+.+|+-++.|-+.+.+++..+
T Consensus 125 ~nTerLeRst~rl~ds~Ria~ETEq-IG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~ 183 (220)
T KOG1666|consen 125 QNTERLERSTDRLKDSQRIALETEQ-IGSEILEDLHGQREQLERARERLRETDANLGKSR 183 (220)
T ss_pred hhhHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHH
Confidence 4566555555555554433222221 111000 001345556666655555555554433
No 244
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=26.34 E-value=1e+02 Score=22.63 Aligned_cols=22 Identities=5% Similarity=0.200 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 029363 41 NSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke 62 (194)
+++++++.+++.++.+.+++-+
T Consensus 36 ~~~r~l~~~~e~lr~~rN~~sk 57 (108)
T PF02403_consen 36 QERRELQQELEELRAERNELSK 57 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHH
Confidence 3556666666666655555433
No 245
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=26.30 E-value=2.3e+02 Score=21.90 Aligned_cols=15 Identities=13% Similarity=0.167 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHh
Q 029363 22 SFCTAIICESISWLL 36 (194)
Q Consensus 22 a~~t~l~se~ls~~L 36 (194)
|+.+-++..+.+|..
T Consensus 72 avgsF~l~s~~~we~ 86 (118)
T PF12597_consen 72 AVGSFFLGSLGSWEY 86 (118)
T ss_pred hhHHHHHHHHHHHHH
Confidence 344444555666654
No 246
>PRK09546 zntB zinc transporter; Reviewed
Probab=26.27 E-value=4.5e+02 Score=23.08 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=10.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhcC
Q 029363 97 FKSGAVVALVLFVVFGLLNSLFEG 120 (194)
Q Consensus 97 ~ksm~~~~l~~i~~f~l~~~~f~g 120 (194)
||-+-++..+|+|+- ++..+|..
T Consensus 264 m~~Ltilt~IflPlT-~IaGiyGM 286 (324)
T PRK09546 264 TYTMSLMAMVFLPTT-FLTGLFGV 286 (324)
T ss_pred HHHHHHHHHHHHHHH-HHHhhhcc
Confidence 444444444444433 44444443
No 247
>PF13864 Enkurin: Calmodulin-binding
Probab=26.27 E-value=2.4e+02 Score=20.67 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=13.8
Q ss_pred hhhHHhHHHHHHHHHHhhhhhhh
Q 029363 73 SKTKKIDRVETSLKESSRDLSLF 95 (194)
Q Consensus 73 ~~~kkler~e~el~~~~~el~~~ 95 (194)
.+..+-+.+|.+|.++-+++..+
T Consensus 71 ~~~~rK~~lE~~L~qlE~dI~~l 93 (98)
T PF13864_consen 71 RKKRRKEELEKELKQLEKDIKKL 93 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667777666666443
No 248
>KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=26.24 E-value=1.9e+02 Score=28.79 Aligned_cols=29 Identities=10% Similarity=-0.046 Sum_probs=21.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhccch
Q 029363 13 SDSLTVVGISFCTAIICESISWLLIYRTN 41 (194)
Q Consensus 13 ~d~l~I~~ia~~t~l~se~ls~~LVyr~e 41 (194)
++.-.-++.+++.+++.++..|.|.|++-
T Consensus 353 ~~Ftahm~pgvlla~l~~~~~lrlly~~~ 381 (685)
T KOG2639|consen 353 AVFTAHMLPGVLLAMLQTFMYLRLLYWNI 381 (685)
T ss_pred hhhhHHHHHHHHHHHHHHhhhHhhheech
Confidence 33344456777888888999999999983
No 249
>TIGR03090 SASP_tlp small, acid-soluble spore protein tlp. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. Although previously designated tlp (thioredoxin-like protein), the B. subtilis protein was shown to be a minor small acid-soluble spore protein SASP, unique to spores. The motif E[VIL]XDE near the C-terminus probably represents at a germination protease cleavage site.
Probab=26.14 E-value=2.3e+02 Score=20.31 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=20.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhh
Q 029363 39 RTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 39 r~e~y~klq~~~~~~~kkl~k~ke 62 (194)
|++.-.|||..+....+-++++.+
T Consensus 6 RsDNVEkLQ~mi~nTieN~~eAee 29 (70)
T TIGR03090 6 RSDNVEKLQQMIDNTIENMEEANE 29 (70)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999998888888877
No 250
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=26.13 E-value=2.3e+02 Score=21.44 Aligned_cols=13 Identities=31% Similarity=0.519 Sum_probs=5.9
Q ss_pred HHhHHHHHHHHHH
Q 029363 76 KKIDRVETSLKES 88 (194)
Q Consensus 76 kkler~e~el~~~ 88 (194)
.++++.++++.+.
T Consensus 128 ~~l~~~~~~~~~a 140 (194)
T cd07307 128 SKLAEAEEELQEA 140 (194)
T ss_pred hHHHHHHHHHHHH
Confidence 3444444444443
No 251
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=26.01 E-value=67 Score=25.96 Aligned_cols=15 Identities=7% Similarity=-0.024 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhhh
Q 029363 48 SSIDKASKKLETMKI 62 (194)
Q Consensus 48 ~~~~~~~kkl~k~ke 62 (194)
...+++.+++++.++
T Consensus 106 ~~~D~l~~~~~~~~~ 120 (145)
T PRK12586 106 NDAHTHASILLSSNE 120 (145)
T ss_pred cchHHHHHHhhhhhh
Confidence 344667777776666
No 252
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=25.90 E-value=3.6e+02 Score=21.82 Aligned_cols=13 Identities=31% Similarity=0.209 Sum_probs=7.0
Q ss_pred hhHHHHHHHHHHH
Q 029363 16 LTVVGISFCTAII 28 (194)
Q Consensus 16 l~I~~ia~~t~l~ 28 (194)
++|.++|++.++.
T Consensus 7 l~taIlAv~~Ai~ 19 (157)
T PF14235_consen 7 LTTAILAVLGAIS 19 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 3455566655554
No 253
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.90 E-value=1.5e+02 Score=26.36 Aligned_cols=20 Identities=10% Similarity=0.189 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 029363 43 YKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 43 y~klq~~~~~~~kkl~k~ke 62 (194)
+..-..++..++++...++.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ 52 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQN 52 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 254
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=25.81 E-value=5e+02 Score=28.90 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=18.6
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHH
Q 029363 8 SSLKYSDSLTVVGISFCTAIICESISW 34 (194)
Q Consensus 8 ~~~~~~d~l~I~~ia~~t~l~se~ls~ 34 (194)
+.++.-|.++|+ +|++.-+++++.+.
T Consensus 1219 ~~WN~FDfvvvI-lSIv~~~ls~~~~~ 1244 (1592)
T KOG2301|consen 1219 SAWNVFDFVVTI-LSIVGIVLSEAVEK 1244 (1592)
T ss_pred ccchheEeeeee-HhHHHHHHHHHHHh
Confidence 456666776655 78888888888864
No 255
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=25.80 E-value=2e+02 Score=21.01 Aligned_cols=21 Identities=14% Similarity=0.468 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 029363 42 SYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 42 ~y~klq~~~~~~~kkl~k~ke 62 (194)
+..|+.+++++..+|+.+.++
T Consensus 2 KleKi~~eieK~k~Kiae~Q~ 22 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQA 22 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666555
No 256
>TIGR03488 cas_Cas5p CRISPR-associated protein, Cas5p family. CC Members of this protein family are cas, or CRISPR-associated, proteins. The two sequences in the alignment seed are found within cas gene clusters that are adjacent to CRISPR DNA repeats in two members of the order Bacteroidales, Porphyromonas gingivalis W83 and Bacteroides forsythus ATCC 43037. This cas protein family is unique to the Pgingi (Porphyromonas gingivalis) subtype, but shows some sequence similarity to genes of the Cas5 type (see TIGR02593).
Probab=25.78 E-value=68 Score=27.15 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=31.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q 029363 13 SDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLE 58 (194)
Q Consensus 13 ~d~l~I~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~ 58 (194)
..++++--=-++|||+-.+|-|-+ +..+-+..|+++++++|+-+
T Consensus 37 ykal~~p~k~iicgl~envlgwh~--~~kdr~~i~kdie~irkk~k 80 (237)
T TIGR03488 37 YKALLVPDKHIICGLFENVLGWHF--DRKDREAIQKDIEKIRKKQK 80 (237)
T ss_pred HHHhcCCcchhhhhhhhhhhhccc--chhhHHHHHHHHHHHHHhcc
Confidence 355666666789999999999997 55455666777766665543
No 257
>PHA03049 IMV membrane protein; Provisional
Probab=25.74 E-value=66 Score=22.85 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=13.7
Q ss_pred cccchhhHHHHHHHHHHHH
Q 029363 11 KYSDSLTVVGISFCTAIIC 29 (194)
Q Consensus 11 ~~~d~l~I~~ia~~t~l~s 29 (194)
|.+|.++++++.+++||+-
T Consensus 1 MI~d~~l~iICVaIi~lIv 19 (68)
T PHA03049 1 MIGDIILVIICVVIIGLIV 19 (68)
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 5678888877777777663
No 258
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=25.65 E-value=2.6e+02 Score=20.09 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 029363 43 YKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 43 y~klq~~~~~~~kkl~k~ke 62 (194)
..+++.+.++++++.++++-
T Consensus 44 l~~l~~~~~~l~~e~~~L~l 63 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRL 63 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55777788888887777666
No 259
>PF09919 DUF2149: Uncharacterized conserved protein (DUF2149); InterPro: IPR018676 This family of conserved hypothetical proteins has no known function.
Probab=25.61 E-value=42 Score=24.98 Aligned_cols=22 Identities=14% Similarity=0.301 Sum_probs=18.4
Q ss_pred ccccccchhhHHHHHHHHHHHH
Q 029363 8 SSLKYSDSLTVVGISFCTAIIC 29 (194)
Q Consensus 8 ~~~~~~d~l~I~~ia~~t~l~s 29 (194)
+-.+..|+.+|+++|+..++++
T Consensus 3 gvvNL~Dv~LVfav~llvalv~ 24 (92)
T PF09919_consen 3 GVVNLFDVMLVFAVGLLVALVM 24 (92)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4467889999999999998874
No 260
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=25.58 E-value=1.7e+02 Score=22.08 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=17.3
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 31 SISWLLIYRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 31 ~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
++=|+|++|+ .++++++.++-++.++.
T Consensus 20 ~ifyFli~RP-----QrKr~K~~~~ml~sL~k 46 (97)
T COG1862 20 AIFYFLIIRP-----QRKRMKEHQELLNSLKK 46 (97)
T ss_pred HHHHHhhcCH-----HHHHHHHHHHHHHhccC
Confidence 3448888776 34556666666666665
No 261
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=25.48 E-value=1e+02 Score=29.61 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 029363 42 SYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 42 ~y~klq~~~~~~~kkl~k~ke 62 (194)
+.++++.++++.+++++..+|
T Consensus 383 k~~q~q~k~~k~~kel~~~~E 403 (493)
T KOG0804|consen 383 KLQQLQTKLKKCQKELKEERE 403 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666665
No 262
>PF06790 UPF0259: Uncharacterised protein family (UPF0259); InterPro: IPR009627 This is a group of proteins of unknown function.
Probab=25.25 E-value=4.6e+02 Score=22.88 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=28.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 029363 14 DSLTVVGISFCTAIICESISWLLIYRTNSYKTLKS 48 (194)
Q Consensus 14 d~l~I~~ia~~t~l~se~ls~~LVyr~e~y~klq~ 48 (194)
....|+.+|++|++++-.+.+.+..+.|+.+.+-+
T Consensus 19 q~~~I~llsll~a~itvil~~~~~p~~~~l~~l~~ 53 (248)
T PF06790_consen 19 QLISILLLSLLTAFITVILNHIFSPNAEQLQILSN 53 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHh
Confidence 34578899999999999999999877777666665
No 263
>PLN02943 aminoacyl-tRNA ligase
Probab=25.24 E-value=1.1e+02 Score=31.75 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 029363 45 TLKSSIDKASKKLETMKIE 63 (194)
Q Consensus 45 klq~~~~~~~kkl~k~ke~ 63 (194)
.++++.++++|++++++.+
T Consensus 886 D~~~E~~rL~K~l~kleke 904 (958)
T PLN02943 886 DISAEVERLSKRLSKMQTE 904 (958)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4677788888888887773
No 264
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=25.18 E-value=3.2e+02 Score=24.06 Aligned_cols=19 Identities=16% Similarity=0.055 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 029363 42 SYKTLKSSIDKASKKLETM 60 (194)
Q Consensus 42 ~y~klq~~~~~~~kkl~k~ 60 (194)
.++.+++|-+++++++.++
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666555
No 265
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=25.13 E-value=2.7e+02 Score=24.88 Aligned_cols=15 Identities=13% Similarity=0.171 Sum_probs=8.5
Q ss_pred ccchhHHHHHHHHHH
Q 029363 38 YRTNSYKTLKSSIDK 52 (194)
Q Consensus 38 yr~e~y~klq~~~~~ 52 (194)
.+.|..++..+.=++
T Consensus 252 l~~e~~~K~~k~R~~ 266 (321)
T PF07946_consen 252 LSPEAKKKAKKNREE 266 (321)
T ss_pred eCHHHHHHHHHHHHH
Confidence 377777666444333
No 266
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=25.10 E-value=1.4e+02 Score=25.41 Aligned_cols=21 Identities=10% Similarity=0.272 Sum_probs=10.6
Q ss_pred HHhHHHHHHHHHHhhhhhhhh
Q 029363 76 KKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 76 kkler~e~el~~~~~el~~~k 96 (194)
+-++..++++.++++++.-..
T Consensus 77 ~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 77 RQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555554443
No 267
>PF14772 NYD-SP28: Sperm tail
Probab=24.72 E-value=2.9e+02 Score=20.29 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=37.6
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhh
Q 029363 31 SISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDL 92 (194)
Q Consensus 31 ~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el 92 (194)
--.|.-+++..+-+.|+++++.+++.-+..=+ .|++-+..++++|.+...+-
T Consensus 41 ~~~W~~i~~~~~~~eL~~~ie~q~~~~e~ii~----------~Kd~lI~~L~~eL~~~deqy 92 (104)
T PF14772_consen 41 NERWREILRKKKPQELRKEIEEQKQACERIID----------RKDALIKELQQELKEADEQY 92 (104)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 34677777888888888888888887777555 24666777777777765543
No 268
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=24.65 E-value=1.5e+02 Score=24.85 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=23.7
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHHHHhhhh
Q 029363 33 SWLLIYRTNSYKTLKSSIDKASKKLETMKIE 63 (194)
Q Consensus 33 s~~LVyr~e~y~klq~~~~~~~kkl~k~ke~ 63 (194)
+.+|--|.-++++|+.++.+++.++++...|
T Consensus 4 ~rvlSar~~ki~~L~n~l~elq~~l~~l~~E 34 (194)
T PF15619_consen 4 QRVLSARLHKIKELQNELAELQRKLQELRKE 34 (194)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445668999999999999988887763
No 269
>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i
Probab=24.64 E-value=2.8e+02 Score=23.70 Aligned_cols=48 Identities=13% Similarity=0.331 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhh---CCCccccchhhhHHhHHHHHHHHHHhhhh
Q 029363 41 NSYKTLKSSIDKASKKLETMKIE---NPAKISTKKSKTKKIDRVETSLKESSRDL 92 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke~---~~~~~~~~k~~~kkler~e~el~~~~~el 92 (194)
.+|.|++.+.+...-++.+-+.. ..+ .....-||+.-|..+.++...|
T Consensus 109 qrYdRmRQeaE~qa~eV~RRq~k~res~~----~~e~~~KL~~AE~Kl~elks~M 159 (209)
T cd07607 109 QRYDRLRQEVEAQAAEVARRRSKDKESGG----NPDNAAKLQSAESKLDELKSSM 159 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCC----ChHHHHHHHHHHHHHHHHHHHH
Confidence 47888888887765555443331 222 2234566777776666655444
No 270
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=24.55 E-value=3.1e+02 Score=20.61 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=25.5
Q ss_pred chhhhHHhHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 029363 71 KKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVA 104 (194)
Q Consensus 71 ~k~~~kkler~e~el~~~~~el~~~k~ksm~~~~ 104 (194)
+.+....+++.+.++.++..++....++..+.-.
T Consensus 44 ~ek~~~e~~~~~~el~~~~~e~~~~e~~~~~~~~ 77 (125)
T PF14265_consen 44 EEKAQEELEELEKELEELEAELARRELRSEAKKV 77 (125)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355678889999999999999888877655443
No 271
>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.33 E-value=1.6e+02 Score=22.00 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 029363 42 SYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 42 ~y~klq~~~~~~~kkl~k~ke 62 (194)
||.+=..+-++++.|+++|+.
T Consensus 64 K~~rD~he~~rl~ari~~Ar~ 84 (95)
T COG4298 64 KYRRDEHESARLSARIEKARN 84 (95)
T ss_pred HHhhhHHHHHHHHHHHHHHHH
Confidence 444444555566666666555
No 272
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.30 E-value=4.7e+02 Score=23.02 Aligned_cols=11 Identities=18% Similarity=0.329 Sum_probs=5.5
Q ss_pred HHHHHHHHhhh
Q 029363 52 KASKKLETMKI 62 (194)
Q Consensus 52 ~~~kkl~k~ke 62 (194)
++.+++..+++
T Consensus 54 ~L~~e~~s~Q~ 64 (247)
T COG3879 54 DLVKELRSLQK 64 (247)
T ss_pred HHHHHHHHHHH
Confidence 55555554444
No 273
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=24.21 E-value=3.3e+02 Score=20.83 Aligned_cols=17 Identities=12% Similarity=0.086 Sum_probs=8.2
Q ss_pred cchhhHHHHHHHHHHHH
Q 029363 13 SDSLTVVGISFCTAIIC 29 (194)
Q Consensus 13 ~d~l~I~~ia~~t~l~s 29 (194)
-|...++++|++.-++.
T Consensus 14 l~p~~~~~~~~lGN~l~ 30 (121)
T PF06695_consen 14 LPPWEAFLLAFLGNILP 30 (121)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34445555555444443
No 274
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=24.21 E-value=1.6e+02 Score=27.34 Aligned_cols=25 Identities=8% Similarity=0.250 Sum_probs=22.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhh
Q 029363 39 RTNSYKTLKSSIDKASKKLETMKIE 63 (194)
Q Consensus 39 r~e~y~klq~~~~~~~kkl~k~ke~ 63 (194)
+++.+.+||..++.+|+++..+++.
T Consensus 40 ~~~~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 40 DQQEISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888999999999999999999884
No 275
>PRK11878 psaM photosystem I reaction center subunit XII; Reviewed
Probab=24.19 E-value=1.2e+02 Score=18.76 Aligned_cols=23 Identities=0% Similarity=0.123 Sum_probs=12.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHH
Q 029363 12 YSDSLTVVGISFCTAIICESISW 34 (194)
Q Consensus 12 ~~d~l~I~~ia~~t~l~se~ls~ 34 (194)
...+++.+++|+.+|++.--+..
T Consensus 7 d~Qi~iaL~~Al~~giLA~RLG~ 29 (34)
T PRK11878 7 DTQVFVALVVALHAGVLALRLGT 29 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666544433
No 276
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=24.10 E-value=2.8e+02 Score=19.88 Aligned_cols=54 Identities=19% Similarity=0.316 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhC---CCccccchhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 43 YKTLKSSIDKASKKLETMKIEN---PAKISTKKSKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 43 y~klq~~~~~~~kkl~k~ke~~---~~~~~~~k~~~kkler~e~el~~~~~el~~~k 96 (194)
-+.+-.....++.|++++++.. .|-+-+-..+..+++.+|+++...+.=|..++
T Consensus 23 ~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 23 SKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777888888888731 11122334677788888888777666555443
No 277
>PRK10780 periplasmic chaperone; Provisional
Probab=24.06 E-value=1.7e+02 Score=23.39 Aligned_cols=19 Identities=0% Similarity=0.120 Sum_probs=10.2
Q ss_pred HHHhhccchhHHHHHHHHHH
Q 029363 33 SWLLIYRTNSYKTLKSSIDK 52 (194)
Q Consensus 33 s~~LVyr~e~y~klq~~~~~ 52 (194)
+.++ -..+.+++.++++++
T Consensus 32 q~il-~~~p~~k~~~~~le~ 50 (165)
T PRK10780 32 GSIF-QQVPQRTGVSKQLEN 50 (165)
T ss_pred HHHH-HHCHHHHHHHHHHHH
Confidence 3444 366666655555543
No 278
>PF07971 Glyco_hydro_92: Glycosyl hydrolase family 92; InterPro: IPR012939 This domain occurs within alpha-1,2-mannosidases, which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation [].; PDB: 2WW2_C 2WVY_B 2WVZ_B 2WW0_H 2WZS_D 2WVX_B 2WW1_D 2WW3_C.
Probab=23.97 E-value=48 Score=31.84 Aligned_cols=26 Identities=31% Similarity=0.726 Sum_probs=19.1
Q ss_pred hcCCCCCCCCCcch-HHHHHHHHHHhhHH
Q 029363 138 SHRGLQGDDATDCS-MAFLYFLCSISIRT 165 (194)
Q Consensus 138 thrgL~G~d~tdcs-~if~Y~Lcsm~~r~ 165 (194)
+..|++|+| ||+ +..||++++||+=+
T Consensus 400 ~p~G~pGnd--D~G~MSaWyV~salG~YP 426 (502)
T PF07971_consen 400 TPDGLPGND--DCGQMSAWYVFSALGFYP 426 (502)
T ss_dssp STT-CSSTT--TTTCCHHHHHHHHHTEE-
T ss_pred ccCCCCCCc--ccchHHHHHHHHHcCCCC
Confidence 368999987 776 57899999987643
No 279
>PRK02868 hypothetical protein; Provisional
Probab=23.75 E-value=5e+02 Score=22.75 Aligned_cols=96 Identities=14% Similarity=0.126 Sum_probs=51.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhh
Q 029363 14 DSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLS 93 (194)
Q Consensus 14 d~l~I~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~ 93 (194)
....|+.+|++|++++..+.+.++=+.|...-+++. ... . + +..-.+=+++.-.|++..==..+
T Consensus 16 q~~~i~~lsll~a~itv~i~~~~~p~~~~l~~l~~~-------~~~----~-~----~~~l~~~v~~ms~eqq~~ll~~s 79 (245)
T PRK02868 16 QFITILLLSLLTAFITVLLGHAFSPSDEQLSILENG-------IPI----S-G----SSGLFELVQNMSPEQQQILLKAS 79 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhh-------hhc----c-c----cccHHHHHHhCCHHHHHHHHHHH
Confidence 446789999999999999999998666554444211 111 1 1 11113334444444444333333
Q ss_pred hhh-hhhhHHHHHHHHHHHHHHHHhhcCccccc
Q 029363 94 LFK-FKSGAVVALVLFVVFGLLNSLFEGKVVAK 125 (194)
Q Consensus 94 ~~k-~ksm~~~~l~~i~~f~l~~~~f~g~~Vak 125 (194)
..+ +-..+...+..-.+..+....-.|+.+..
T Consensus 80 ~~~~~s~lig~~lL~g~il~~I~~~s~g~~v~~ 112 (245)
T PRK02868 80 AASTFSGLIGNTLLLGGILTLIQLVSAGQRVSA 112 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 333 43444444555555556666666654433
No 280
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=23.66 E-value=5e+02 Score=22.68 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=8.1
Q ss_pred hhhhHHHHHHHHHHH
Q 029363 97 FKSGAVVALVLFVVF 111 (194)
Q Consensus 97 ~ksm~~~~l~~i~~f 111 (194)
+-.|+.+.++|..+|
T Consensus 154 i~aml~Vf~LF~lvm 168 (230)
T PF03904_consen 154 IGAMLFVFMLFALVM 168 (230)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555555
No 281
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=23.60 E-value=1.4e+02 Score=26.46 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=17.3
Q ss_pred hhhHHhHHHHHHHHHHhhhhhhhh-hhhhH
Q 029363 73 SKTKKIDRVETSLKESSRDLSLFK-FKSGA 101 (194)
Q Consensus 73 ~~~kkler~e~el~~~~~el~~~k-~ksm~ 101 (194)
.-+.|+||...|+...++-|...+ .||-+
T Consensus 194 ~Le~KIekkk~ELER~qKRL~sLq~vRPAf 223 (267)
T PF10234_consen 194 NLEAKIEKKKQELERNQKRLQSLQSVRPAF 223 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 345566666666666666665554 66643
No 282
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=23.58 E-value=57 Score=23.22 Aligned_cols=18 Identities=11% Similarity=0.087 Sum_probs=11.8
Q ss_pred cccchhhHHHHHHHHHHH
Q 029363 11 KYSDSLTVVGISFCTAII 28 (194)
Q Consensus 11 ~~~d~l~I~~ia~~t~l~ 28 (194)
|.+|.++++++.+++|++
T Consensus 1 MI~d~iLi~ICVaii~lI 18 (68)
T PF05961_consen 1 MIGDFILIIICVAIIGLI 18 (68)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 456777777666666665
No 283
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=23.15 E-value=2.1e+02 Score=24.91 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=37.0
Q ss_pred ccchhHHHHHHHH--HHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 38 YRTNSYKTLKSSI--DKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 38 yr~e~y~klq~~~--~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k 96 (194)
+=++-|+|-+++. +.+.++.-.... ...+...++.++++.+...+.++.+-++|...|
T Consensus 90 LP~DPy~Ra~arfwa~~id~~~~~~~~-~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k~k 149 (231)
T KOG0406|consen 90 LPSDPYERAQARFWAEYIDKKVFFVGR-FVVAAKGGEEQEAAKEELREALKVLEEELGKGK 149 (231)
T ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHH-HHHhhcCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4677899888876 555655554444 211112235567777888888888888888434
No 284
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.09 E-value=81 Score=23.21 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=10.8
Q ss_pred HHhHHHHHHHHHHhhhh
Q 029363 76 KKIDRVETSLKESSRDL 92 (194)
Q Consensus 76 kkler~e~el~~~~~el 92 (194)
+++||+|+|-+.+++|+
T Consensus 21 erIERlEeEk~~i~~di 37 (85)
T COG3750 21 ERIERLEEEKKTIADDI 37 (85)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35666777666666655
No 285
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=23.01 E-value=2.9e+02 Score=20.93 Aligned_cols=8 Identities=0% Similarity=0.094 Sum_probs=4.7
Q ss_pred HHHHhhcC
Q 029363 113 LLNSLFEG 120 (194)
Q Consensus 113 l~~~~f~g 120 (194)
.+..|.+.
T Consensus 61 ~lG~WLD~ 68 (100)
T TIGR02230 61 AVGIWLDR 68 (100)
T ss_pred HHHHHHHh
Confidence 55666555
No 286
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=22.98 E-value=1.3e+02 Score=25.03 Aligned_cols=18 Identities=11% Similarity=0.252 Sum_probs=9.4
Q ss_pred hHHhHHHHHHHHHHhhhh
Q 029363 75 TKKIDRVETSLKESSRDL 92 (194)
Q Consensus 75 ~kkler~e~el~~~~~el 92 (194)
++++++.+++...+|.+|
T Consensus 155 e~~l~~a~~~y~~lN~~L 172 (216)
T cd07599 155 ERKLEEAKEEYEALNELL 172 (216)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555555
No 287
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=22.97 E-value=3.1e+02 Score=21.03 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhh
Q 029363 44 KTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLF 95 (194)
Q Consensus 44 ~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~ 95 (194)
.++.++++.+...+|+.=. ..++.+ +.+-++--+|.+.-|++.++.++-.
T Consensus 11 ~~l~~el~~L~d~lEevL~-ssg~~a-~~e~~~lR~r~~~~Lk~~r~rl~~~ 60 (104)
T COG4575 11 DQLLAELQELLDTLEEVLK-SSGSLA-GDEAEELRSKAESALKEARDRLGDT 60 (104)
T ss_pred HHHHHHHHHHHHHHHHHHH-hcccch-hhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6677777777777777555 223222 2233444456666666666655544
No 288
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=22.96 E-value=62 Score=26.04 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=18.1
Q ss_pred CCCCCCcchHHHHHHHHHHhhH
Q 029363 143 QGDDATDCSMAFLYFLCSISIR 164 (194)
Q Consensus 143 ~G~d~tdcs~if~Y~Lcsm~~r 164 (194)
.|++-+|||..++|.|-.-++.
T Consensus 24 ~G~~s~DCSs~V~~ALr~aG~~ 45 (145)
T PF05382_consen 24 NGPDSYDCSSFVYQALRAAGFK 45 (145)
T ss_pred CCCCcCchHHHHHHHHHHcCCC
Confidence 3888889999999998766663
No 289
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=22.76 E-value=3.3e+02 Score=21.45 Aligned_cols=19 Identities=11% Similarity=0.366 Sum_probs=12.7
Q ss_pred hHHhHHHHHHHHHHhhhhh
Q 029363 75 TKKIDRVETSLKESSRDLS 93 (194)
Q Consensus 75 ~kkler~e~el~~~~~el~ 93 (194)
+++++..++++...+.++.
T Consensus 167 ~~~l~~a~~~f~~~~~~l~ 185 (229)
T PF03114_consen 167 EEKLEEAKEEFEALNEELK 185 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6677777777777665553
No 290
>PRK03100 sec-independent translocase; Provisional
Probab=22.62 E-value=4e+02 Score=21.27 Aligned_cols=20 Identities=15% Similarity=0.380 Sum_probs=13.3
Q ss_pred ccccccccchhhHHHHHHHH
Q 029363 6 MLSSLKYSDSLTVVGISFCT 25 (194)
Q Consensus 6 ~~~~~~~~d~l~I~~ia~~t 25 (194)
|++.+-+..+++|+++|++.
T Consensus 1 Mf~~iG~~EllvI~vVaLvv 20 (136)
T PRK03100 1 MFANIGWGEMLVLVVAGLVI 20 (136)
T ss_pred CcccccHHHHHHHHHHHHhh
Confidence 44556667778887777654
No 291
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=22.44 E-value=2e+02 Score=17.56 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 029363 44 KTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 44 ~klq~~~~~~~kkl~k~ke 62 (194)
++|-.+-+.++++.+-+|.
T Consensus 4 qkL~sekeqLrrr~eqLK~ 22 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKH 22 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555544
No 292
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=22.44 E-value=5.1e+02 Score=24.32 Aligned_cols=6 Identities=0% Similarity=-0.003 Sum_probs=2.7
Q ss_pred HHHHHh
Q 029363 31 SISWLL 36 (194)
Q Consensus 31 ~ls~~L 36 (194)
++.+++
T Consensus 17 lL~kfl 22 (445)
T PRK13428 17 LVWRFV 22 (445)
T ss_pred HHHHHH
Confidence 344444
No 293
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.40 E-value=3.1e+02 Score=19.94 Aligned_cols=8 Identities=25% Similarity=0.372 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 029363 21 ISFCTAII 28 (194)
Q Consensus 21 ia~~t~l~ 28 (194)
+|++++++
T Consensus 22 igil~~~~ 29 (149)
T COG2165 22 IGILAALA 29 (149)
T ss_pred HHHHHHHH
Confidence 34444333
No 294
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=22.34 E-value=6e+02 Score=26.15 Aligned_cols=13 Identities=8% Similarity=0.020 Sum_probs=6.1
Q ss_pred HhhHHHHHHHhCC
Q 029363 161 ISIRTNLQKFLGF 173 (194)
Q Consensus 161 m~~r~~iqKlLG~ 173 (194)
|++.+.++--++.
T Consensus 708 mgvtmflqqkls~ 720 (795)
T PRK01001 708 LGVVMFAQQKISS 720 (795)
T ss_pred HHHHHHHHHHhcc
Confidence 4445555444443
No 295
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=22.33 E-value=1.4e+02 Score=22.89 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=7.7
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q 029363 39 RTNSYKTLKSSIDKASKKLE 58 (194)
Q Consensus 39 r~e~y~klq~~~~~~~kkl~ 58 (194)
+++++..|.++++++..+++
T Consensus 94 tk~ev~~L~~RI~~Le~~l~ 113 (118)
T TIGR01837 94 SREEIEALSAKIEQLAVQVE 113 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 296
>PF12848 ABC_tran_2: ABC transporter
Probab=22.32 E-value=1.1e+02 Score=21.20 Aligned_cols=8 Identities=13% Similarity=0.771 Sum_probs=4.3
Q ss_pred hhHHhHHH
Q 029363 74 KTKKIDRV 81 (194)
Q Consensus 74 ~~kkler~ 81 (194)
..++|+++
T Consensus 63 r~k~lekl 70 (85)
T PF12848_consen 63 REKRLEKL 70 (85)
T ss_pred HHHHHHHH
Confidence 44555555
No 297
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.25 E-value=1.1e+02 Score=29.05 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 029363 44 KTLKSSIDKASKKLETMKIE 63 (194)
Q Consensus 44 ~klq~~~~~~~kkl~k~ke~ 63 (194)
.||++|-+..++++++.|++
T Consensus 275 ~kyqeEfe~~q~elek~k~e 294 (497)
T KOG3838|consen 275 AKYQEEFEWAQLELEKRKDE 294 (497)
T ss_pred HHHHHHHHHHHHHHhhhHhh
Confidence 37788888888888888874
No 298
>PF09677 TrbI_Ftype: Type-F conjugative transfer system protein (TrbI_Ftype); InterPro: IPR014115 This entry represents TrbI, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm [, ].
Probab=22.16 E-value=3.6e+02 Score=20.57 Aligned_cols=43 Identities=19% Similarity=0.360 Sum_probs=27.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhc-cchhHH--HHHHHHHHHHHH
Q 029363 14 DSLTVVGISFCTAIICESISWLLIY-RTNSYK--TLKSSIDKASKK 56 (194)
Q Consensus 14 d~l~I~~ia~~t~l~se~ls~~LVy-r~e~y~--klq~~~~~~~kk 56 (194)
+.+.++.+++++.+++..++|.+.- +++.+- .+++-+++....
T Consensus 3 ~~l~~~~~~~~~~~~~~~vt~~l~~~~~p~iV~~dl~~tv~~f~~~ 48 (111)
T PF09677_consen 3 RWLVIVLLAVAALLLSAWVTWLLASQPQPRIVTFDLKGTVDEFVQQ 48 (111)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeeHHHHHHHHHHH
Confidence 4577788888899999999999963 244322 334444444333
No 299
>PRK09039 hypothetical protein; Validated
Probab=22.07 E-value=3.5e+02 Score=24.49 Aligned_cols=27 Identities=11% Similarity=0.277 Sum_probs=14.4
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHHHH
Q 029363 30 ESISWLLIYRTNSYKTLKSSIDKASKKLET 59 (194)
Q Consensus 30 e~ls~~LVyr~e~y~klq~~~~~~~kkl~k 59 (194)
.+.|.+| .+....+.+++++++.++..
T Consensus 38 ~~~q~fL---s~~i~~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 38 VVAQFFL---SREISGKDSALDRLNSQIAE 64 (343)
T ss_pred HHHHHHH---HHHHhhHHHHHHHHHHHHHH
Confidence 4666666 23455555555555554444
No 300
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=22.04 E-value=1.6e+02 Score=22.77 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=12.0
Q ss_pred hhHHhHHHHHHHHHHhhhh
Q 029363 74 KTKKIDRVETSLKESSRDL 92 (194)
Q Consensus 74 ~~kkler~e~el~~~~~el 92 (194)
...+++++|+++.++..++
T Consensus 88 l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 88 LTERVDALERQVADLENKL 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4556777777776665554
No 301
>PF05644 Miff: Mitochondrial and peroxisomal fission factor Mff; InterPro: IPR008518 This family consists of several eukaryotic proteins of unknown function.
Probab=21.96 E-value=1.8e+02 Score=25.54 Aligned_cols=34 Identities=32% Similarity=0.565 Sum_probs=19.0
Q ss_pred hHHhHHHHHHHHH-HhhhhhhhhhhhhHHHHHHHHHHHHHHHHhh
Q 029363 75 TKKIDRVETSLKE-SSRDLSLFKFKSGAVVALVLFVVFGLLNSLF 118 (194)
Q Consensus 75 ~kkler~e~el~~-~~~el~~~k~ksm~~~~l~~i~~f~l~~~~f 118 (194)
.+++.-+|++-++ .++|+-++ .+.+.|+++|.|+
T Consensus 208 nrRl~~lE~~n~~r~~re~~~y----------~~~va~~l~n~w~ 242 (246)
T PF05644_consen 208 NRRLQALEEENKERQQREMILY----------SITVAFWLLNSWL 242 (246)
T ss_pred hHHHHHHHHHhHHHHhHHHHHH----------HHHHHHHHHHHHH
Confidence 3456666777666 67776332 3333444666664
No 302
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.93 E-value=3.5e+02 Score=23.11 Aligned_cols=49 Identities=24% Similarity=0.453 Sum_probs=30.2
Q ss_pred ccch-----hHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhh
Q 029363 38 YRTN-----SYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLS 93 (194)
Q Consensus 38 yr~e-----~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~ 93 (194)
.|++ .+.+++++++...+|+..++. ..+ .+...+|+++.++..-.+++.
T Consensus 137 ~R~~k~~~~~i~~l~~ri~~~~~kl~~l~~-~~~------~~~~e~ekl~~~i~~d~~~i~ 190 (246)
T cd07597 137 ERHEKLSLNNIQRLLKRIELNKKKLESLRA-KPD------VKGAEVDKLEASIIKDKESIA 190 (246)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHhhc-CCC------CchhHHHHHHHHHhccHHHHH
Confidence 5666 788888888888888888876 311 123345555555544333333
No 303
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=21.76 E-value=2e+02 Score=28.69 Aligned_cols=44 Identities=9% Similarity=0.180 Sum_probs=25.2
Q ss_pred cchHHHHHHhcCCCCCCCCCcchHH-----HHHHHHHHh-hHHHHHHHhCCCC
Q 029363 129 KPFGIVMKMSHRGLQGDDATDCSMA-----FLYFLCSIS-IRTNLQKFLGFSP 175 (194)
Q Consensus 129 ~pi~~~~~~thrgL~G~d~tdcs~i-----f~Y~Lcsm~-~r~~iqKlLG~~~ 175 (194)
.|+..+..++|+++.+.. --+- .+|+.|.-+ .+.+.+.+.++++
T Consensus 520 ~pvk~ve~~t~~~Ie~~e---~~~gik~GDvi~v~~~sG~g~~~a~~li~~~~ 569 (652)
T COG2433 520 TPVKVVEKLTLEAIEEAE---EEYGIKEGDVILVEDPSGGGARTAEELIDKKP 569 (652)
T ss_pred cceehhhhhhHHHHHhHH---HhhccccCcEEEEEcCCCcchHhHHHHhccCc
Confidence 466666677777655332 1111 256666554 3467777777776
No 304
>PLN02320 seryl-tRNA synthetase
Probab=21.69 E-value=1.3e+02 Score=29.05 Aligned_cols=22 Identities=5% Similarity=0.176 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 029363 41 NSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke 62 (194)
+++++++.++++++.++++.-+
T Consensus 100 ~~~r~~~~~~~~lr~ern~~sk 121 (502)
T PLN02320 100 ENMLALQKEVERLRAERNAVAN 121 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666667666666655433
No 305
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=21.62 E-value=1.9e+02 Score=27.39 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029363 43 YKTLKSSIDKASKKLET 59 (194)
Q Consensus 43 y~klq~~~~~~~kkl~k 59 (194)
.+..+.+++++++++..
T Consensus 40 l~q~q~ei~~~~~~i~~ 56 (420)
T COG4942 40 LKQIQKEIAALEKKIRE 56 (420)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 306
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=21.50 E-value=3e+02 Score=19.40 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=15.8
Q ss_pred hHHhHHHHHHHHHHhhhhhhhhh
Q 029363 75 TKKIDRVETSLKESSRDLSLFKF 97 (194)
Q Consensus 75 ~kkler~e~el~~~~~el~~~k~ 97 (194)
..+++++-+++.+...++.....
T Consensus 86 ~~~i~a~~~~~~~~~~~l~~~~~ 108 (125)
T PF13801_consen 86 EAAIEALLEEIREAQAELRQERL 108 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777655443
No 307
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=21.49 E-value=2.2e+02 Score=29.00 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=22.2
Q ss_pred HHHHHHHhhhhC--CCccccchhhhHHhHHHHHHHHH-Hhhhh
Q 029363 53 ASKKLETMKIEN--PAKISTKKSKTKKIDRVETSLKE-SSRDL 92 (194)
Q Consensus 53 ~~kkl~k~ke~~--~~~~~~~k~~~kkler~e~el~~-~~~el 92 (194)
++.+.+.+|.|. ++ .++|..-+.|+|.+|+++++ +..-|
T Consensus 671 LK~k~E~Lk~Evaka~-~~pd~~~k~kieal~~qik~~~~~a~ 712 (762)
T PLN03229 671 LKSKIELLKLEVAKAS-KTPDVTEKEKIEALEQQIKQKIAEAL 712 (762)
T ss_pred HHHHHHHHHHHHHhcC-CCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 344555555431 22 33444445889999988887 44333
No 308
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=21.41 E-value=1.5e+02 Score=22.74 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=11.9
Q ss_pred HHhhccchhHHHHHHHHHHHHHHHH
Q 029363 34 WLLIYRTNSYKTLKSSIDKASKKLE 58 (194)
Q Consensus 34 ~~LVyr~e~y~klq~~~~~~~kkl~ 58 (194)
|+|+.|+. +|-+++.++....|+
T Consensus 18 yF~~iRPQ--kKr~K~~~~m~~~Lk 40 (109)
T PRK05886 18 MYFASRRQ--RKAMQATIDLHESLQ 40 (109)
T ss_pred HHHHccHH--HHHHHHHHHHHHhcC
Confidence 56666664 444445555444443
No 309
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=21.30 E-value=2.7e+02 Score=18.70 Aligned_cols=48 Identities=10% Similarity=0.249 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhhhh
Q 029363 48 SSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFK 98 (194)
Q Consensus 48 ~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k~k 98 (194)
.+++++..++....+-+.- ......+.|.+++.|-..+..+|...+++
T Consensus 4 ~Rl~ELe~klkaerE~R~~---d~~~a~~rl~~l~~EN~~Lr~eL~~~r~~ 51 (52)
T PF12808_consen 4 LRLEELERKLKAEREARSL---DRSAARKRLSKLEGENRLLRAELERLRSR 51 (52)
T ss_pred HHHHHHHHHHHHhHHhccC---CchhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4667777777666652211 12234778888888888888888766544
No 310
>PRK14127 cell division protein GpsB; Provisional
Probab=21.21 E-value=2.2e+02 Score=21.93 Aligned_cols=19 Identities=11% Similarity=0.406 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 029363 42 SYKTLKSSIDKASKKLETM 60 (194)
Q Consensus 42 ~y~klq~~~~~~~kkl~k~ 60 (194)
.|..+.++..+++++++.+
T Consensus 38 dye~l~~e~~~Lk~e~~~l 56 (109)
T PRK14127 38 DYEAFQKEIEELQQENARL 56 (109)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333
No 311
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=21.19 E-value=2.4e+02 Score=20.19 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHh
Q 029363 45 TLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESS 89 (194)
Q Consensus 45 klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~ 89 (194)
.|.+.++++++++++.+. . ...++++++++-+.+.+
T Consensus 2 eL~~~~~~l~~~~~~~~~-~--------e~~~~~~~i~~~~~~~G 37 (93)
T PF00816_consen 2 ELEAQIKELEKEIEERRK-Q--------EREEAIAEIRELMAEYG 37 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH-H--------CCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHHHHHhC
Confidence 455666666666665555 1 13566777776666633
No 312
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.17 E-value=2.9e+02 Score=21.36 Aligned_cols=14 Identities=29% Similarity=0.264 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhhh
Q 029363 49 SIDKASKKLETMKI 62 (194)
Q Consensus 49 ~~~~~~kkl~k~ke 62 (194)
+..+++++|+++|+
T Consensus 26 ~q~~l~~eL~~~k~ 39 (128)
T PF06295_consen 26 KQAKLEQELEQAKQ 39 (128)
T ss_pred hHHHHHHHHHHHHH
Confidence 34566677776555
No 313
>COG4605 CeuC ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
Probab=21.09 E-value=1.6e+02 Score=26.84 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=31.6
Q ss_pred ccccccchhhHHHHHHHHHH----HHHHHHHHhhccchhHHHHHHHH
Q 029363 8 SSLKYSDSLTVVGISFCTAI----ICESISWLLIYRTNSYKTLKSSI 50 (194)
Q Consensus 8 ~~~~~~d~l~I~~ia~~t~l----~se~ls~~LVyr~e~y~klq~~~ 50 (194)
.+.+..|.-.++.++++.|- +|++.|..+ |+++|..+|++|
T Consensus 123 f~~~~r~l~~~lLiGlv~G~lFrSiSsfmq~li--DPneF~~lQ~~m 167 (316)
T COG4605 123 FSGGGRDLHLLLLIGLVLGTLFRSISSFMQRLI--DPNEFAILQARM 167 (316)
T ss_pred HhcCCCceeHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHH
Confidence 34556788888887777765 567777665 999999999998
No 314
>KOG2447 consensus Oligosaccharyltransferase, delta subunit (ribophorin II) [Posttranslational modification, protein turnover, chaperones]
Probab=21.09 E-value=1.8e+02 Score=26.13 Aligned_cols=46 Identities=24% Similarity=0.364 Sum_probs=32.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhc-CccccccCCcchHHHHHHhcCCCCC
Q 029363 97 FKSGAVVALVLFVVFGLLNSLFE-GKVVAKLPFKPFGIVMKMSHRGLQG 144 (194)
Q Consensus 97 ~ksm~~~~l~~i~~f~l~~~~f~-g~~VakLPF~pi~~~~~~thrgL~G 144 (194)
.-|.+.++++++++.+++--|-- |..|-..|+.|.+ .-..|-|+.|
T Consensus 198 ~lS~iFt~iiv~pll~Llv~W~klg~Nv~n~pss~~s--~~~Fh~gi~g 244 (287)
T KOG2447|consen 198 PLSDIFTGIIVSPLLGLLVLWLKLGANVSNFPSSPTS--TLGFHAGIAG 244 (287)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCch--hhhhhhHHHH
Confidence 55788888888888887666644 5677788888874 3346777733
No 315
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=21.05 E-value=1.6e+02 Score=28.35 Aligned_cols=70 Identities=14% Similarity=0.233 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhccchhHHHHHH-HHHHHHHHHHHhhhh-------CCCccccchhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 27 IICESISWLLIYRTNSYKTLKS-SIDKASKKLETMKIE-------NPAKISTKKSKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 27 l~se~ls~~LVyr~e~y~klq~-~~~~~~kkl~k~ke~-------~~~~~~~~k~~~kkler~e~el~~~~~el~~~k 96 (194)
++..-+.-.-.|.-+.|.++.+ +++.....++.+..+ ..+.++.++.-.+++++.+..+++.++|+.--+
T Consensus 325 ll~sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 325 LLTSQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444466666666654 665555544443332 111122233344555566666666555554444
No 316
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=21.05 E-value=3.6e+02 Score=26.68 Aligned_cols=13 Identities=8% Similarity=0.350 Sum_probs=5.5
Q ss_pred hHHhHHHHHHHHH
Q 029363 75 TKKIDRVETSLKE 87 (194)
Q Consensus 75 ~kkler~e~el~~ 87 (194)
..++.++|.++.+
T Consensus 384 ~~~l~~le~~l~~ 396 (656)
T PRK06975 384 DSQFAQLDGKLAD 396 (656)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 317
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=20.94 E-value=2.4e+02 Score=23.26 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=14.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHh
Q 029363 39 RTNSYKTLKSSIDKASKKLETM 60 (194)
Q Consensus 39 r~e~y~klq~~~~~~~kkl~k~ 60 (194)
+-+.|+.+++.++++.++++.+
T Consensus 45 d~~~yknyk~ki~eLke~lK~~ 66 (160)
T PF03978_consen 45 DAEAYKNYKKKINELKEDLKDV 66 (160)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777777777777766654
No 318
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=20.91 E-value=5.1e+02 Score=22.64 Aligned_cols=13 Identities=46% Similarity=0.452 Sum_probs=10.0
Q ss_pred HHHHHHHHHhhhh
Q 029363 51 DKASKKLETMKIE 63 (194)
Q Consensus 51 ~~~~kkl~k~ke~ 63 (194)
.+.+|+++++|++
T Consensus 110 a~~rk~l~~LK~e 122 (251)
T COG5415 110 AIHRKKLEKLKEE 122 (251)
T ss_pred HHHHHHHHHHhhh
Confidence 4567889999884
No 319
>PF05752 Calici_MSP: Calicivirus minor structural protein; InterPro: IPR008437 This family consists of minor structural proteins largely from the Caliciviridaei family of viruses, including Sapporo virus (Hu/Chiba/041413/2004/JP) and Sapporo virus (Hu/Ehime/04-1680/2004/JP). These viruses cause gastroenteritis. The function of this family is unknown.
Probab=20.88 E-value=2.6e+02 Score=23.18 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=18.0
Q ss_pred hHHhHHHHHHHHHHhhhhhhhh
Q 029363 75 TKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 75 ~kkler~e~el~~~~~el~~~k 96 (194)
..|-|+++.+.++++++|+..-
T Consensus 45 ~~kqe~Lq~~~~dls~~La~ng 66 (167)
T PF05752_consen 45 MNKQEQLQRRQQDLSRDLAVNG 66 (167)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 5677889999999999996644
No 320
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=20.88 E-value=4.7e+02 Score=24.28 Aligned_cols=42 Identities=19% Similarity=0.273 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhh
Q 029363 21 ISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIE 63 (194)
Q Consensus 21 ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~ 63 (194)
.++.++=|.|+-+-+= -..|-|.+++.+|++..++..++..+
T Consensus 224 l~lY~aKyeefq~tl~-KSNE~F~~fK~E~ekmtKk~kklEKE 265 (391)
T KOG1850|consen 224 LALYMAKYEEFQTTLA-KSNELFTKFKQEMEKMTKKIKKLEKE 265 (391)
T ss_pred HHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888877766 68899999999999999988887765
No 321
>PLN02381 valyl-tRNA synthetase
Probab=20.79 E-value=1.4e+02 Score=31.32 Aligned_cols=19 Identities=11% Similarity=0.389 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 029363 45 TLKSSIDKASKKLETMKIE 63 (194)
Q Consensus 45 klq~~~~~~~kkl~k~ke~ 63 (194)
.++++.++++|++++++.+
T Consensus 994 D~~~E~~rL~K~l~kleke 1012 (1066)
T PLN02381 994 NAEAELEKLRNKMDEIQKQ 1012 (1066)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 3677888888888888773
No 322
>COG1133 SbmA ABC-type long-chain fatty acid transport system, fused permease and ATPase components [Lipid metabolism]
Probab=20.77 E-value=6.8e+02 Score=23.23 Aligned_cols=79 Identities=19% Similarity=0.202 Sum_probs=44.5
Q ss_pred HhHHHHHHHHHHhhhhhhh--hhhhhHHHHHHHHHHHHHHHHhhcCccccccCCcchHHHHHHhcCCCCCCCCCcchHHH
Q 029363 77 KIDRVETSLKESSRDLSLF--KFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAF 154 (194)
Q Consensus 77 kler~e~el~~~~~el~~~--k~ksm~~~~l~~i~~f~l~~~~f~g~~VakLPF~pi~~~~~~thrgL~G~d~tdcs~if 154 (194)
+-||+||+-|..++-+-.. .+-..+.|-+.|+|++.-++. +|..||+ .|+.+ .-.+
T Consensus 186 asQRvQEDTmrFSstlE~LGvsfi~siMTLiaFlPvL~~ls~-----~Vs~Lpi--------------ig~ip---~~Lv 243 (405)
T COG1133 186 ASQRVQEDTMRFSSTLENLGVSFINAIMTLIAFLPVLFTLSA-----HVSELPI--------------IGHIP---HALV 243 (405)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-----hcccCcc--------------cccCc---hHHH
Confidence 4578888888744433222 355667777888888744443 3445662 23331 2234
Q ss_pred HHHHHHHhhHHHHHHHhCCCCCC
Q 029363 155 LYFLCSISIRTNLQKFLGFSPPR 177 (194)
Q Consensus 155 ~Y~Lcsm~~r~~iqKlLG~~~~~ 177 (194)
|=.+.--.+...+--..|++.|.
T Consensus 244 ~aAi~wslfGtv~la~vGIKLPG 266 (405)
T COG1133 244 WAAIVWSLFGTVLLAVVGIKLPG 266 (405)
T ss_pred HHHHHHHHhchHHHHhhhccCCC
Confidence 44444445556666666777663
No 323
>PRK10780 periplasmic chaperone; Provisional
Probab=20.77 E-value=2.6e+02 Score=22.27 Aligned_cols=12 Identities=8% Similarity=0.207 Sum_probs=4.9
Q ss_pred HHhHHHHHHHHH
Q 029363 76 KKIDRVETSLKE 87 (194)
Q Consensus 76 kkler~e~el~~ 87 (194)
+++.+.++++..
T Consensus 90 ~el~~~~~~~q~ 101 (165)
T PRK10780 90 KDVMAQRQTFSQ 101 (165)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 324
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=20.65 E-value=1.5e+02 Score=30.73 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 029363 45 TLKSSIDKASKKLETMKI 62 (194)
Q Consensus 45 klq~~~~~~~kkl~k~ke 62 (194)
.+.++.++++|++++++.
T Consensus 926 d~~~E~~rL~K~l~kl~~ 943 (995)
T PTZ00419 926 DLKKELAKLEKKLAKLQK 943 (995)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 356777888888888777
No 325
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=20.58 E-value=1.5e+02 Score=27.69 Aligned_cols=20 Identities=5% Similarity=0.283 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 029363 42 SYKTLKSSIDKASKKLETMK 61 (194)
Q Consensus 42 ~y~klq~~~~~~~kkl~k~k 61 (194)
++++++.++++++.++++.-
T Consensus 36 ~~r~l~~~~~~lr~~rn~~s 55 (425)
T PRK05431 36 ERRELQTELEELQAERNALS 55 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554433
No 326
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=20.57 E-value=3.5e+02 Score=21.00 Aligned_cols=18 Identities=11% Similarity=0.294 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 029363 42 SYKTLKSSIDKASKKLET 59 (194)
Q Consensus 42 ~y~klq~~~~~~~kkl~k 59 (194)
+.+.++++++++++-+++
T Consensus 9 q~~~l~~~v~~lRed~r~ 26 (112)
T PF07439_consen 9 QLGTLNAEVKELREDIRR 26 (112)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666666666665543
No 327
>PF14048 MBD_C: C-terminal domain of methyl-CpG binding protein 2 and 3; PDB: 2L2L_B.
Probab=20.49 E-value=1.2e+02 Score=22.83 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=14.7
Q ss_pred HHhhccchhHHHHHHHHHHHHHHHHHh
Q 029363 34 WLLIYRTNSYKTLKSSIDKASKKLETM 60 (194)
Q Consensus 34 ~~LVyr~e~y~klq~~~~~~~kkl~k~ 60 (194)
.++| -.++.++...++++.++||.+|
T Consensus 70 ~~~V-T~eDIr~QE~rVk~aR~RLaeA 95 (96)
T PF14048_consen 70 QFVV-TEEDIRRQERRVKKARKRLAEA 95 (96)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcc-CHHHHHHHHHHHHHHHHHHHHH
Confidence 4445 4467777777777777777664
No 328
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=20.43 E-value=2.5e+02 Score=24.80 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=9.3
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q 029363 39 RTNSYKTLKSSIDKASKKLET 59 (194)
Q Consensus 39 r~e~y~klq~~~~~~~kkl~k 59 (194)
..+.|. +++++++++..+
T Consensus 25 p~~~Y~---~ei~~L~~~i~~ 42 (298)
T PF11262_consen 25 PKELYD---EEIERLEKEISQ 42 (298)
T ss_pred CHHHHH---HHHHHHHHHHHH
Confidence 444444 455555555554
No 329
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.41 E-value=3.9e+02 Score=23.34 Aligned_cols=24 Identities=13% Similarity=0.376 Sum_probs=13.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhh
Q 029363 38 YRTNSYKTLKSSIDKASKKLETMK 61 (194)
Q Consensus 38 yr~e~y~klq~~~~~~~kkl~k~k 61 (194)
.|+++.++|..++++++++.+..-
T Consensus 171 ~rre~~~kLe~~ie~~~~~ve~f~ 194 (240)
T cd07667 171 LRKEERPKVPTDVEKCQDRVECFN 194 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555554433
No 330
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=20.27 E-value=43 Score=25.83 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhhh
Q 029363 40 TNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 40 ~e~y~klq~~~~~~~kkl~k~ke 62 (194)
++..+.+..+++++...++.++.
T Consensus 111 ~~~~~~~~~~l~~l~~~l~~i~~ 133 (183)
T PF01105_consen 111 KEHLDPLEESLEKLESNLKEIKD 133 (183)
T ss_dssp -----------------------
T ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444
No 331
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.27 E-value=4.9e+02 Score=22.54 Aligned_cols=40 Identities=25% Similarity=0.381 Sum_probs=29.9
Q ss_pred HhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 029363 77 KIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNS 116 (194)
Q Consensus 77 kler~e~el~~~~~el~~~k~ksm~~~~l~~i~~f~l~~~ 116 (194)
-+.|-..-+..|.+-+-+.||-...+|.+.++.++..+-+
T Consensus 178 ~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY~ 217 (220)
T KOG1666|consen 178 NLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILYS 217 (220)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556788899999999998888888877777754433
No 332
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=20.26 E-value=2.5e+02 Score=25.11 Aligned_cols=8 Identities=38% Similarity=0.738 Sum_probs=1.7
Q ss_pred cccCCcch
Q 029363 124 AKLPFKPF 131 (194)
Q Consensus 124 akLPF~pi 131 (194)
+.+|..|+
T Consensus 159 Grl~~~~V 166 (314)
T PF04111_consen 159 GRLPNVPV 166 (314)
T ss_dssp --BTTB--
T ss_pred ccCCCCCC
Confidence 33444444
No 333
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=20.24 E-value=1.4e+02 Score=17.35 Aligned_cols=24 Identities=8% Similarity=0.333 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhHH
Q 029363 19 VGISFCTAIICESISWLLIYRTNSYK 44 (194)
Q Consensus 19 ~~ia~~t~l~se~ls~~LVyr~e~y~ 44 (194)
+++.+..+++. -+-+.|+ |.|+|.
T Consensus 2 i~~~l~~~L~~-YL~~aLl-~PErF~ 25 (26)
T TIGR02115 2 ILLVLAVGLFI-YLFYALL-RPERFX 25 (26)
T ss_pred HHHHHHHHHHH-HHHHHHh-CHHhcC
Confidence 34444445543 3444553 888763
No 334
>PRK00708 sec-independent translocase; Provisional
Probab=20.23 E-value=4.1e+02 Score=22.79 Aligned_cols=17 Identities=12% Similarity=0.272 Sum_probs=12.5
Q ss_pred cccccchhhHHHHHHHH
Q 029363 9 SLKYSDSLTVVGISFCT 25 (194)
Q Consensus 9 ~~~~~d~l~I~~ia~~t 25 (194)
.+-+..+++|++++++.
T Consensus 3 dIG~~ELlvI~vVaLvV 19 (209)
T PRK00708 3 DIGWSELLVIAIVLIVV 19 (209)
T ss_pred CccHHHHHHHHHHHHhh
Confidence 35667888888888765
No 335
>PRK12704 phosphodiesterase; Provisional
Probab=20.23 E-value=4.9e+02 Score=25.07 Aligned_cols=6 Identities=17% Similarity=0.628 Sum_probs=2.5
Q ss_pred HHHHHh
Q 029363 31 SISWLL 36 (194)
Q Consensus 31 ~ls~~L 36 (194)
++.|++
T Consensus 19 ~ig~~i 24 (520)
T PRK12704 19 VIGYFV 24 (520)
T ss_pred HHHHHH
Confidence 344443
No 336
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.19 E-value=3.4e+02 Score=26.36 Aligned_cols=55 Identities=16% Similarity=0.205 Sum_probs=35.5
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhh
Q 029363 30 ESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRD 91 (194)
Q Consensus 30 e~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~e 91 (194)
+-|+|++=.-.+.-+.++.+|+.+.+++.++++ ...+ --.||++.+.+.+++++-
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk-~~ad------~~~KI~~~k~r~~~Ls~R 391 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQK-HHAD------AVAKIEEAKNRHVELSHR 391 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhh------HHHHHHHHHHHHHHHHHH
Confidence 566666655666777888888888888888886 4331 134566555555554443
No 337
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=20.14 E-value=2.5e+02 Score=25.81 Aligned_cols=17 Identities=12% Similarity=0.460 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029363 43 YKTLKSSIDKASKKLET 59 (194)
Q Consensus 43 y~klq~~~~~~~kkl~k 59 (194)
|+..++++.+.+++.+.
T Consensus 275 Yr~~~~~ls~~~~~y~~ 291 (359)
T PF10498_consen 275 YRSAQDELSEVQEKYKQ 291 (359)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444443333
No 338
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=20.12 E-value=2.8e+02 Score=18.56 Aligned_cols=29 Identities=21% Similarity=0.159 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccchhHHHH
Q 029363 17 TVVGISFCTAIICESISWLLIYRTNSYKTL 46 (194)
Q Consensus 17 ~I~~ia~~t~l~se~ls~~LVyr~e~y~kl 46 (194)
+|..+-.+|+..+-++.+.. |+.-+|.+-
T Consensus 17 tV~~Lig~T~~~g~~~~~~~-y~~~~~~r~ 45 (59)
T PF14880_consen 17 TVLGLIGFTVYGGGLTVYTV-YSYFKYNRR 45 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34444344444433344443 454444433
No 339
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=20.12 E-value=1.7e+02 Score=22.23 Aligned_cols=16 Identities=13% Similarity=0.345 Sum_probs=8.7
Q ss_pred HHhHHHHHHHHHHhhh
Q 029363 76 KKIDRVETSLKESSRD 91 (194)
Q Consensus 76 kkler~e~el~~~~~e 91 (194)
+.++..++++.++.++
T Consensus 83 ~e~~~~~k~i~~le~~ 98 (100)
T PF04568_consen 83 EEIEHHRKEIDELEKH 98 (100)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344466666665554
No 340
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=20.06 E-value=56 Score=24.36 Aligned_cols=10 Identities=20% Similarity=0.727 Sum_probs=7.1
Q ss_pred HHHHHhhccc
Q 029363 31 SISWLLIYRT 40 (194)
Q Consensus 31 ~ls~~LVyr~ 40 (194)
+|=|+|++|+
T Consensus 85 ~l~w~f~~r~ 94 (96)
T PTZ00382 85 FLCWWFVCRG 94 (96)
T ss_pred HHhheeEEee
Confidence 4558888775
Done!