Query 029363
Match_columns 194
No_of_seqs 111 out of 133
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 19:12:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029363.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029363hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lf0_A Uncharacterized protein 82.6 2.5 8.4E-05 32.2 5.5 47 41-96 10-56 (123)
2 3hnw_A Uncharacterized protein 74.5 6.7 0.00023 30.1 5.9 32 31-63 66-97 (138)
3 3hd7_A Vesicle-associated memb 73.0 17 0.00058 25.7 7.4 30 88-117 59-88 (91)
4 3sjb_C Golgi to ER traffic pro 71.9 8.5 0.00029 27.9 5.5 24 73-96 53-76 (93)
5 3sja_C Golgi to ER traffic pro 71.1 7.5 0.00026 26.4 4.8 47 41-94 6-57 (65)
6 2akf_A Coronin-1A; coiled coil 70.6 5.6 0.00019 23.0 3.4 22 41-62 6-27 (32)
7 2k48_A Nucleoprotein; viral pr 67.2 8.6 0.00029 28.5 4.8 54 40-93 34-99 (107)
8 3iv1_A Tumor susceptibility ge 65.6 32 0.0011 24.1 7.8 58 29-96 9-66 (78)
9 2p4v_A Transcription elongatio 64.0 17 0.00057 28.2 6.3 57 39-96 7-73 (158)
10 3nmd_A CGMP dependent protein 61.8 17 0.00057 25.2 5.1 20 74-93 45-64 (72)
11 3vlc_E Golgi to ER traffic pro 60.4 9 0.00031 27.8 3.7 48 42-96 31-83 (94)
12 1lrz_A FEMA, factor essential 59.2 12 0.0004 33.0 5.1 49 44-93 250-298 (426)
13 2ic6_A Nucleocapsid protein; h 57.6 17 0.00059 25.5 4.7 54 40-93 4-69 (78)
14 3twe_A Alpha4H; unknown functi 57.1 11 0.00038 20.8 2.9 16 47-62 7-22 (27)
15 1grj_A GREA protein; transcrip 56.6 27 0.00093 26.9 6.3 57 39-96 7-73 (158)
16 4g3b_A Alpha4F3D; alpha helix, 53.2 17 0.00059 19.9 3.2 16 41-56 5-20 (26)
17 2kog_A Vesicle-associated memb 53.2 32 0.0011 25.6 5.9 74 39-113 31-112 (119)
18 3w03_C DNA repair protein XRCC 52.6 28 0.00097 28.0 5.9 32 27-62 142-173 (184)
19 3lay_A Zinc resistance-associa 48.2 37 0.0013 27.0 5.9 23 75-97 112-134 (175)
20 2knc_B Integrin beta-3; transm 45.7 40 0.0014 23.3 5.0 9 39-47 40-48 (79)
21 1tt9_A Formimidoyltransferase- 45.3 74 0.0025 29.7 8.2 45 17-63 360-404 (541)
22 1use_A VAsp, vasodilator-stimu 41.2 64 0.0022 20.3 4.9 23 40-62 6-29 (45)
23 1ic2_A Tropomyosin alpha chain 40.6 68 0.0023 21.8 5.6 22 41-62 6-27 (81)
24 3mq7_A Bone marrow stromal ant 40.4 60 0.0021 24.4 5.5 16 43-58 73-88 (121)
25 2yy0_A C-MYC-binding protein; 39.6 33 0.0011 22.0 3.5 24 39-62 17-40 (53)
26 1lq7_A Alpha3W; three helix bu 38.2 66 0.0023 21.1 4.9 16 72-87 51-66 (67)
27 2knc_B Integrin beta-3; transm 36.0 1E+02 0.0036 21.1 6.2 20 43-62 37-56 (79)
28 2f23_A Anti-cleavage anti-GREA 35.7 1.1E+02 0.0039 23.1 6.8 57 39-96 8-73 (156)
29 3nmd_A CGMP dependent protein 35.3 71 0.0024 22.0 4.9 22 75-96 39-60 (72)
30 3sok_A Fimbrial protein; pilus 34.4 1.1E+02 0.0038 22.8 6.5 44 17-62 9-52 (151)
31 3u1c_A Tropomyosin alpha-1 cha 34.0 91 0.0031 22.2 5.6 21 41-61 9-29 (101)
32 2l16_A SEC-independent protein 33.5 39 0.0013 23.4 3.4 17 7-23 2-18 (78)
33 2ic9_A Nucleocapsid protein; h 32.6 79 0.0027 22.9 5.0 23 40-62 4-33 (96)
34 3u0c_A Invasin IPAB, 62 kDa an 30.9 73 0.0025 25.6 4.9 11 25-35 71-81 (201)
35 2ve7_C Kinetochore protein NUF 30.9 26 0.00089 29.2 2.5 21 26-47 124-144 (250)
36 2ke4_A CDC42-interacting prote 30.8 1.4E+02 0.0049 21.3 6.2 20 44-63 18-37 (98)
37 3mud_A DNA repair protein XRCC 30.6 1.4E+02 0.0049 23.7 6.6 33 30-62 124-156 (175)
38 1gax_A Valrs, valyl-tRNA synth 30.1 82 0.0028 30.7 6.2 49 44-93 803-859 (862)
39 1pi7_A VPU protein, U ORF prot 29.6 80 0.0027 18.8 3.8 27 19-47 7-33 (36)
40 3uul_A Utrophin; spectrin repe 29.5 1.2E+02 0.0042 20.6 5.7 17 43-59 45-61 (118)
41 1gmj_A ATPase inhibitor; coile 28.3 1.3E+02 0.0045 21.2 5.4 14 75-88 57-70 (84)
42 3m9b_A Proteasome-associated A 28.3 50 0.0017 27.9 3.8 21 42-62 55-75 (251)
43 3err_A Fusion protein of micro 28.3 94 0.0032 28.7 6.0 33 28-62 162-194 (536)
44 3mq9_A Bone marrow stromal ant 27.9 48 0.0016 29.1 3.8 20 74-93 441-460 (471)
45 3okq_A BUD site selection prot 27.5 1.6E+02 0.0055 22.7 6.2 47 45-96 25-74 (141)
46 3p7i_A PHND, subunit of alkylp 27.5 1E+02 0.0035 25.7 5.7 52 39-95 259-310 (321)
47 1g6u_A Domain swapped dimer; d 26.1 1.2E+02 0.0041 18.7 5.3 36 53-96 5-40 (48)
48 2eqb_B RAB guanine nucleotide 25.9 75 0.0026 23.0 3.9 17 76-92 47-63 (97)
49 4f6r_C Stathmin-like domain R1 25.8 65 0.0022 22.9 3.5 14 49-62 43-56 (87)
50 1oqw_A Fimbrial protein; type 25.7 1.4E+02 0.0047 21.9 5.6 44 17-62 9-52 (144)
51 3swf_A CGMP-gated cation chann 25.3 1E+02 0.0036 21.2 4.3 44 41-87 7-50 (74)
52 3hnw_A Uncharacterized protein 25.0 76 0.0026 24.0 4.0 20 43-62 84-103 (138)
53 3u59_A Tropomyosin beta chain; 24.8 1.6E+02 0.0056 20.6 5.6 22 41-62 9-30 (101)
54 1go4_E MAD1 (mitotic arrest de 24.7 2E+02 0.0068 20.8 7.0 24 39-62 10-33 (100)
55 2efr_A General control protein 24.6 1.2E+02 0.0041 23.6 5.2 49 41-96 70-118 (155)
56 3ni0_A Bone marrow stromal ant 24.3 92 0.0031 22.6 4.0 21 73-93 64-84 (99)
57 2ve7_A Kinetochore protein HEC 24.3 49 0.0017 28.3 3.1 25 26-51 149-173 (315)
58 3b2e_E Golgi to ER traffic pro 30.0 16 0.00055 25.9 0.0 48 42-96 21-73 (84)
59 2wuj_A Septum site-determining 24.2 57 0.0019 20.9 2.7 22 41-62 34-55 (57)
60 1ic2_A Tropomyosin alpha chain 24.0 1.5E+02 0.005 20.1 5.0 16 75-90 47-62 (81)
61 1o5h_A Formiminotetrahydrofola 24.0 69 0.0024 26.2 3.8 44 17-62 40-83 (214)
62 3rvy_A ION transport protein; 23.7 49 0.0017 27.0 2.9 15 77-91 264-278 (285)
63 1xaw_A Occludin; coiled-coil, 23.6 1E+02 0.0036 23.6 4.5 23 40-62 58-80 (140)
64 1ses_A Seryl-tRNA synthetase; 22.6 1.3E+02 0.0046 26.6 5.7 22 41-62 35-56 (421)
65 2lf0_A Uncharacterized protein 22.5 83 0.0028 23.7 3.6 25 38-62 33-57 (123)
66 3n5l_A Binding protein compone 22.3 1.6E+02 0.0054 24.2 5.9 51 39-94 250-300 (310)
67 1gmj_A ATPase inhibitor; coile 22.0 2.1E+02 0.0073 20.1 6.2 13 76-88 65-77 (84)
68 2pih_A Protein YMCA; regulate 21.8 2.4E+02 0.0081 21.3 6.3 11 39-49 22-32 (151)
69 2wvx_A Mannosidase, putative a 21.5 41 0.0014 32.4 2.2 23 139-163 617-640 (744)
70 2q13_A DCC-interacting protein 21.0 1.9E+02 0.0064 24.6 6.2 22 41-62 124-145 (385)
71 1wt6_A Myotonin-protein kinase 20.9 2.2E+02 0.0076 19.9 7.2 11 78-88 61-71 (81)
72 3qne_A Seryl-tRNA synthetase, 20.8 70 0.0024 29.3 3.5 19 42-60 41-59 (485)
73 2b5u_A Colicin E3; high resolu 20.6 1.7E+02 0.0057 27.3 5.9 52 39-98 292-343 (551)
No 1
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=82.61 E-value=2.5 Score=32.15 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 41 NSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k 96 (194)
...++|.++++..+.++..++. +++ ...+.+.++|...++.++...|
T Consensus 10 ~Eiq~L~drLD~~~rKlaaa~~-rgd--------~~~i~qf~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 10 NEIKRLSDRLDAIRHQQADLSL-VEA--------ADKYAELEKEKATLEAEIARLR 56 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCT-TTC--------TTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCC--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777888888888777 766 5566666666666666666655
No 2
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=74.53 E-value=6.7 Score=30.12 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=22.2
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHHHHHhhhh
Q 029363 31 SISWLLIYRTNSYKTLKSSIDKASKKLETMKIE 63 (194)
Q Consensus 31 ~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~ 63 (194)
+..-++ --++.+..+.+++++..+++..+|.+
T Consensus 66 iadEl~-k~~~~~~~L~~~l~~~~kE~~~lK~e 97 (138)
T 3hnw_A 66 IADDYF-KAKKMADSLSLDIENKDKEIYDLKHE 97 (138)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 35667888888888888877777773
No 3
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=72.96 E-value=17 Score=25.68 Aligned_cols=30 Identities=7% Similarity=0.093 Sum_probs=16.7
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHHHHHHHh
Q 029363 88 SSRDLSLFKFKSGAVVALVLFVVFGLLNSL 117 (194)
Q Consensus 88 ~~~el~~~k~ksm~~~~l~~i~~f~l~~~~ 117 (194)
+++++-.-.+|-+++++++.+++.+.+-.|
T Consensus 59 l~rkmwwkn~K~~iii~~iv~~il~ii~~~ 88 (91)
T 3hd7_A 59 LKRKYWWKNLKMMIILGVICAIILIIIIVY 88 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444777777776666655444333
No 4
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=71.90 E-value=8.5 Score=27.91 Aligned_cols=24 Identities=8% Similarity=0.308 Sum_probs=21.3
Q ss_pred hhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 73 SKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 73 ~~~kkler~e~el~~~~~el~~~k 96 (194)
|..++++++.+|+...++++...+
T Consensus 53 KL~Rk~DKl~~ele~l~~~l~~~k 76 (93)
T 3sjb_C 53 KNNRKLDSLDKEINNLKDEIQSEN 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999998766
No 5
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=71.10 E-value=7.5 Score=26.42 Aligned_cols=47 Identities=6% Similarity=0.164 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhCCCccccch-----hhhHHhHHHHHHHHHHhhhhhh
Q 029363 41 NSYKTLKSSIDKASKKLETMKIENPAKISTKK-----SKTKKIDRVETSLKESSRDLSL 94 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k-----~~~kkler~e~el~~~~~el~~ 94 (194)
+++++++.++.++..++.. ..+.|. |-.++++++-+++...++++..
T Consensus 6 ~~~~~l~~E~~~lk~E~~s-------tSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 6 KKYLAKVKERHELKEFNNS-------ISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHTT-------SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455555555555554432 223344 7788899999999998888753
No 6
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=70.60 E-value=5.6 Score=23.04 Aligned_cols=22 Identities=14% Similarity=0.388 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 029363 41 NSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke 62 (194)
|+.++|+.-++++|++++++.+
T Consensus 6 e~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 6 EDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888888776
No 7
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=67.24 E-value=8.6 Score=28.52 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=28.9
Q ss_pred chhHHHHHHHHHHH-------HHHHHHhhhhC-CCccccch----hhhHHhHHHHHHHHHHhhhhh
Q 029363 40 TNSYKTLKSSIDKA-------SKKLETMKIEN-PAKISTKK----SKTKKIDRVETSLKESSRDLS 93 (194)
Q Consensus 40 ~e~y~klq~~~~~~-------~kkl~k~ke~~-~~~~~~~k----~~~kkler~e~el~~~~~el~ 93 (194)
++..++|++++... ++||++|.+.- -++++..| +....+..+|..+.++.++|+
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLA 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888764 45666665521 12222121 223334556666666665554
No 8
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=65.56 E-value=32 Score=24.06 Aligned_cols=58 Identities=12% Similarity=0.395 Sum_probs=39.4
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 29 CESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 29 se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k 96 (194)
..-|.|.+ +|.+...|++++.+.+--+++++ | +.|-+..+++++.+..++..++...+
T Consensus 9 eDKLRrrl---~E~~~q~qaEl~sLrrT~~EL~~---G----~~KL~~mi~~l~~E~~~l~~ni~~lk 66 (78)
T 3iv1_A 9 SDKLRWRM---KEEMDRAQAELNALKRTEEDLKK---G----HQKLEEMVTRLDQEVAEVDKNIELLK 66 (78)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHh---h----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666665 57888888888877776666666 3 23445667777777777766665544
No 9
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=64.01 E-value=17 Score=28.19 Aligned_cols=57 Identities=11% Similarity=0.191 Sum_probs=35.7
Q ss_pred cchhHHHHHHHHHHHHH--------HHHHhhhhCCC-ccccc-hhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 39 RTNSYKTLKSSIDKASK--------KLETMKIENPA-KISTK-KSKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 39 r~e~y~klq~~~~~~~k--------kl~k~ke~~~~-~~~~~-k~~~kkler~e~el~~~~~el~~~k 96 (194)
-.+.|++|+++++.+.. ++++|.+ .|+ +++.+ ...+++..++|.++.++.+.|...+
T Consensus 7 T~~g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~-~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~A~ 73 (158)
T 2p4v_A 7 TREGYEKLKQELNYLWREERPEVTKKVTWAAS-LGDRSENADYQYNKKRLREIDRRVRYLTKCMENLK 73 (158)
T ss_dssp CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH-HSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCE
T ss_pred cHHHHHHHHHHHHHHHhcchHHHHHHHHHHHh-CCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhCe
Confidence 56889999999999844 4444554 233 12210 1345666777777888777775544
No 10
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=61.83 E-value=17 Score=25.18 Aligned_cols=20 Identities=10% Similarity=0.212 Sum_probs=13.8
Q ss_pred hhHHhHHHHHHHHHHhhhhh
Q 029363 74 KTKKIDRVETSLKESSRDLS 93 (194)
Q Consensus 74 ~~kkler~e~el~~~~~el~ 93 (194)
.++.++..++++.+++.++=
T Consensus 45 LEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 45 LELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777763
No 11
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=60.41 E-value=9 Score=27.84 Aligned_cols=48 Identities=6% Similarity=0.131 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhCCCccccch-----hhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 42 SYKTLKSSIDKASKKLETMKIENPAKISTKK-----SKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 42 ~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k-----~~~kkler~e~el~~~~~el~~~k 96 (194)
++++++.++.++..++. +..+.|. |..++++++.+|+...+.+|...+
T Consensus 31 ~~~~lk~E~~~lk~E~~-------stSaQDEFAKWAKL~Rk~DKl~~ele~l~~~L~s~k 83 (94)
T 3vlc_E 31 KYLAKVKERHELKEFNN-------SISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSEN 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHT-------TSCTTTCHHHHHHHHHHHHHHHHHTTTHHHHTTTTH
T ss_pred HHHHHHHHHHHHHHHHh-------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544443 2233344 778889999999999999887766
No 12
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=59.19 E-value=12 Score=32.99 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhh
Q 029363 44 KTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLS 93 (194)
Q Consensus 44 ~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~ 93 (194)
..++++++++.++++++++ .....+..+|+++|+..+++++....+.+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 298 (426)
T 1lrz_A 250 KELNEERDILNKDLNKALK-DIEKRPENKKAHNKRDNLQQQLDANEQKIE 298 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HhhhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777888888888765 212122345667777777777777666554
No 13
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=57.56 E-value=17 Score=25.45 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=28.0
Q ss_pred chhHHHHHHHHHHH-------HHHHHHhhhhC-CCccccch----hhhHHhHHHHHHHHHHhhhhh
Q 029363 40 TNSYKTLKSSIDKA-------SKKLETMKIEN-PAKISTKK----SKTKKIDRVETSLKESSRDLS 93 (194)
Q Consensus 40 ~e~y~klq~~~~~~-------~kkl~k~ke~~-~~~~~~~k----~~~kkler~e~el~~~~~el~ 93 (194)
++..++|++++... ++||+++.+.- -++++..| +....+..+|..+.++.++|+
T Consensus 4 M~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlA 69 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELA 69 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888664 45666665521 12222121 223334556666666666554
No 14
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=57.08 E-value=11 Score=20.79 Aligned_cols=16 Identities=6% Similarity=0.314 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhhh
Q 029363 47 KSSIDKASKKLETMKI 62 (194)
Q Consensus 47 q~~~~~~~kkl~k~ke 62 (194)
-++++++|+++.++++
T Consensus 7 ykeledlqerlrklrk 22 (27)
T 3twe_A 7 YKELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455556655555443
No 15
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=56.59 E-value=27 Score=26.88 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=33.8
Q ss_pred cchhHHHHHHHHHHHHH--------HHHHhhhhCCC-ccccc-hhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 39 RTNSYKTLKSSIDKASK--------KLETMKIENPA-KISTK-KSKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 39 r~e~y~klq~~~~~~~k--------kl~k~ke~~~~-~~~~~-k~~~kkler~e~el~~~~~el~~~k 96 (194)
-.+.|++|+++++.+.. .+.+|.+ -++ +++.+ ...+++...+|..+.++.++|...+
T Consensus 7 T~~g~~~L~~El~~L~~~~rp~i~~~i~~A~~-~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~~a~ 73 (158)
T 1grj_A 7 TLRGAEKLREELDFLKSVRRPEIIAAIAEARE-HGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNAQ 73 (158)
T ss_dssp EHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT-TCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CHHHHHHHHHHHHHHHhccchhhHhhHHHHHh-cccccccchhhhHHHHHHHHHHHHHHHHHHHhhCe
Confidence 56889999999999876 3334444 222 12211 1234445556666777777776655
No 16
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=53.24 E-value=17 Score=19.85 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=6.9
Q ss_pred hhHHHHHHHHHHHHHH
Q 029363 41 NSYKTLKSSIDKASKK 56 (194)
Q Consensus 41 e~y~klq~~~~~~~kk 56 (194)
|.|++|.+..+++.+.
T Consensus 5 e~ykeled~qerlrk~ 20 (26)
T 4g3b_A 5 EXYKELEDXQERLRKX 20 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455444444443333
No 17
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=53.20 E-value=32 Score=25.56 Aligned_cols=74 Identities=11% Similarity=0.167 Sum_probs=41.0
Q ss_pred cchhHHHHHHHHHHHHHHHHH----hhhhCCCccc--cchh--hhHHhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 029363 39 RTNSYKTLKSSIDKASKKLET----MKIENPAKIS--TKKS--KTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVV 110 (194)
Q Consensus 39 r~e~y~klq~~~~~~~kkl~k----~ke~~~~~~~--~~k~--~~kkler~e~el~~~~~el~~~k~ksm~~~~l~~i~~ 110 (194)
..++..++|+++++.+..+.+ .-+ ||.+-+ .+|. -...-++.+..=.++++++-..++|.+++++++.+++
T Consensus 31 ~~d~l~~vq~evdeVk~IM~~NIdkvLe-RGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~ii 109 (119)
T 2kog_A 31 SNRRLQQTQAQVDEVVDIMRVNVDKVLE-RDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAII 109 (119)
T ss_dssp SCSHHHHSSHHHHHHHHHHHHHHHHHHC-CCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888887665444 333 433211 0110 0001123334445567777776788888887777766
Q ss_pred HHH
Q 029363 111 FGL 113 (194)
Q Consensus 111 f~l 113 (194)
.++
T Consensus 110 i~i 112 (119)
T 2kog_A 110 LII 112 (119)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 18
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=52.64 E-value=28 Score=28.04 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 27 IICESISWLLIYRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 27 l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
.+.|++.|.| +.+.+|+++.++++++-++++.
T Consensus 142 ~i~elid~~l----d~~~~L~~~n~~LqkeNeRL~~ 173 (184)
T 3w03_C 142 VIRELICYCL----DTIAENQAKNEHLQKENERLLR 173 (184)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777766 6899999999999999999888
No 19
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=48.23 E-value=37 Score=26.98 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=15.1
Q ss_pred hHHhHHHHHHHHHHhhhhhhhhh
Q 029363 75 TKKIDRVETSLKESSRDLSLFKF 97 (194)
Q Consensus 75 ~kkler~e~el~~~~~el~~~k~ 97 (194)
.++++++.+|+.+++.++...++
T Consensus 112 eakI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 112 TAKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777776666665553
No 20
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=45.65 E-value=40 Score=23.32 Aligned_cols=9 Identities=0% Similarity=0.316 Sum_probs=4.0
Q ss_pred cchhHHHHH
Q 029363 39 RTNSYKTLK 47 (194)
Q Consensus 39 r~e~y~klq 47 (194)
|+-+|+|.+
T Consensus 40 DrrE~~kFE 48 (79)
T 2knc_B 40 DRKEFAKFE 48 (79)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444444
No 21
>1tt9_A Formimidoyltransferase-cyclodeaminase (formiminotransferase- cyclodeaminase) (FTCD)...; hepatitis autoantigen, intermediate channeling; 3.42A {Rattus norvegicus} PDB: 2pfd_A
Probab=45.29 E-value=74 Score=29.67 Aligned_cols=45 Identities=9% Similarity=0.168 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhh
Q 029363 17 TVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIE 63 (194)
Q Consensus 17 ~I~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~ 63 (194)
.-++.|+.++|.+-..+ |-+.+++|..+.++++++.++.++++++
T Consensus 360 AAl~gAlgaAL~sMVan--LTiGKkkY~~~e~~m~~i~~~~~~l~~~ 404 (541)
T 1tt9_A 360 AAAVAALGAALASMVGQ--MTYGRRQFDHLDSTMRRLIPPFHAASAQ 404 (541)
T ss_pred HHHHHHHHHHHHHHHHH--HhcCccchhhHHHHHHHHHHHHHHHHHH
Confidence 34455666666644433 4469999999999999888888886664
No 22
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=41.23 E-value=64 Score=20.26 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=16.5
Q ss_pred chhHHHHHHHH-HHHHHHHHHhhh
Q 029363 40 TNSYKTLKSSI-DKASKKLETMKI 62 (194)
Q Consensus 40 ~e~y~klq~~~-~~~~kkl~k~ke 62 (194)
.+.+.++++++ ++..+++.|+|+
T Consensus 6 ~~dle~~KqEIL~E~RkElqK~K~ 29 (45)
T 1use_A 6 YSDLQRVKQELLEEVKKELQKVKE 29 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777665 677788888777
No 23
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=40.61 E-value=68 Score=21.85 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 029363 41 NSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke 62 (194)
.+++.++.+.+....+.+.+..
T Consensus 6 kKm~~lk~e~d~a~~~~~~~e~ 27 (81)
T 1ic2_A 6 KKMQMLKLDKENALDRAEQAEA 27 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566565555555555443
No 24
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=40.42 E-value=60 Score=24.43 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 029363 43 YKTLKSSIDKASKKLE 58 (194)
Q Consensus 43 y~klq~~~~~~~kkl~ 58 (194)
+++|+.+++++..+|+
T Consensus 73 vqeLqgEI~~Lnq~Lq 88 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQ 88 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444433333
No 25
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=39.58 E-value=33 Score=22.04 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=20.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhh
Q 029363 39 RTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 39 r~e~y~klq~~~~~~~kkl~k~ke 62 (194)
...+|.+|+.+.++++.|++.+++
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~ 40 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVE 40 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999888877
No 26
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=38.21 E-value=66 Score=21.08 Aligned_cols=16 Identities=19% Similarity=0.478 Sum_probs=8.7
Q ss_pred hhhhHHhHHHHHHHHH
Q 029363 72 KSKTKKIDRVETSLKE 87 (194)
Q Consensus 72 k~~~kkler~e~el~~ 87 (194)
++..+...++|++++.
T Consensus 51 kkveeevkkleeeikk 66 (67)
T 1lq7_A 51 KKVEEEVKKLEEEIKK 66 (67)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhc
Confidence 3445555566666653
No 27
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=36.02 E-value=1e+02 Score=21.11 Aligned_cols=20 Identities=10% Similarity=-0.044 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 029363 43 YKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 43 y~klq~~~~~~~kkl~k~ke 62 (194)
+-.=+.|-++..++..+++-
T Consensus 37 ~i~DrrE~~kFEkE~~~~~w 56 (79)
T 2knc_B 37 TIHDRKEFAKFEEERARAKW 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 33334455666666666653
No 28
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=35.70 E-value=1.1e+02 Score=23.14 Aligned_cols=57 Identities=12% Similarity=0.225 Sum_probs=33.8
Q ss_pred cchhHHHHHHHHHHHHHHHHH-------hhhhCCCc-cccc-hhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 39 RTNSYKTLKSSIDKASKKLET-------MKIENPAK-ISTK-KSKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 39 r~e~y~klq~~~~~~~kkl~k-------~ke~~~~~-~~~~-k~~~kkler~e~el~~~~~el~~~k 96 (194)
-.+.|++|+++++....++.+ |.+ .|+- ++.+ ...+++..++|..+.++.++|...+
T Consensus 8 T~~g~~~L~~el~~~~~~r~~~~~~i~~A~~-~GDlsEnaey~aak~~q~~~e~ri~~L~~~L~~a~ 73 (156)
T 2f23_A 8 TKAGYERLMQQLERERERLQEATKILQELME-SSDDYDDSGLEAAKQEKARIEARIDSLEDILSRAV 73 (156)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 578899999999885544443 333 2332 2211 1334445566667777777776654
No 29
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=35.27 E-value=71 Score=21.95 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=15.0
Q ss_pred hHHhHHHHHHHHHHhhhhhhhh
Q 029363 75 TKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 75 ~kkler~e~el~~~~~el~~~k 96 (194)
+..++.+|.++.+...++.-.+
T Consensus 39 d~~I~eLEk~L~ekd~eI~~Lq 60 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQ 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777766665544
No 30
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=34.44 E-value=1.1e+02 Score=22.82 Aligned_cols=44 Identities=9% Similarity=-0.047 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 17 TVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 17 ~I~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
+|.+++++.++..-.++... ++.+..+.+.++..++..++....
T Consensus 9 viaIigiLaaia~p~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~ 52 (151)
T 3sok_A 9 VVAIIGILAAFAIPAYNDYI--ARSQAAEGLTLADGLKVRISDHLE 52 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666644444443 445555556666666666666555
No 31
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=33.97 E-value=91 Score=22.19 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q 029363 41 NSYKTLKSSIDKASKKLETMK 61 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~k 61 (194)
.+++.|+.+.+....+.+.++
T Consensus 9 kKm~~lk~e~e~a~drae~~e 29 (101)
T 3u1c_A 9 KKMQMLKLDKENALDRAEQAE 29 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555444
No 32
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=33.53 E-value=39 Score=23.41 Aligned_cols=17 Identities=12% Similarity=0.256 Sum_probs=8.9
Q ss_pred cccccccchhhHHHHHH
Q 029363 7 LSSLKYSDSLTVVGISF 23 (194)
Q Consensus 7 ~~~~~~~d~l~I~~ia~ 23 (194)
+..+-..+.++|+++++
T Consensus 2 Mf~ig~~ElliIlvVaL 18 (78)
T 2l16_A 2 FSNIGIPGLILIFVIAL 18 (78)
T ss_dssp CSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 33444456666665554
No 33
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=32.60 E-value=79 Score=22.89 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=15.1
Q ss_pred chhHHHHHHHHHHH-------HHHHHHhhh
Q 029363 40 TNSYKTLKSSIDKA-------SKKLETMKI 62 (194)
Q Consensus 40 ~e~y~klq~~~~~~-------~kkl~k~ke 62 (194)
++..++|++++... ++||+++.+
T Consensus 4 M~~i~eLq~e~~~~E~QL~~A~QKLkdA~~ 33 (96)
T 2ic9_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKDAER 33 (96)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888887664 446666555
No 34
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=30.93 E-value=73 Score=25.60 Aligned_cols=11 Identities=27% Similarity=0.525 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 029363 25 TAIICESISWL 35 (194)
Q Consensus 25 t~l~se~ls~~ 35 (194)
|.|-+.+-+|.
T Consensus 71 TqL~nrL~~wl 81 (201)
T 3u0c_A 71 TALTNKITAWK 81 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444455554
No 35
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=30.89 E-value=26 Score=29.21 Aligned_cols=21 Identities=14% Similarity=0.320 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhccchhHHHHH
Q 029363 26 AIICESISWLLIYRTNSYKTLK 47 (194)
Q Consensus 26 ~l~se~ls~~LVyr~e~y~klq 47 (194)
-++|-++++.. ||.+++..+.
T Consensus 124 ~iLSalINF~~-FRE~~~~~~~ 144 (250)
T 2ve7_C 124 RFLSGIINFIH-FREACRETYM 144 (250)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHH
Confidence 34555666666 6776665443
No 36
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=30.81 E-value=1.4e+02 Score=21.26 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 029363 44 KTLKSSIDKASKKLETMKIE 63 (194)
Q Consensus 44 ~klq~~~~~~~kkl~k~ke~ 63 (194)
++|+..+++++++++++...
T Consensus 18 kkL~~Ki~el~~ei~ke~~~ 37 (98)
T 2ke4_A 18 KRLQQQLEERSRELQKEVDQ 37 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57788888888887776553
No 37
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=30.58 E-value=1.4e+02 Score=23.74 Aligned_cols=33 Identities=27% Similarity=0.285 Sum_probs=23.4
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 30 ESISWLLIYRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 30 e~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
|+++-++.|--..-.+|+++++++.+++..+|+
T Consensus 124 E~ireli~~AertV~kLqkeiD~LEDeL~~eKe 156 (175)
T 3mud_A 124 EVIRELICYCLDTTAKNEKSIDDLEEKVAHAKE 156 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445677899999999999988777
No 38
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=30.11 E-value=82 Score=30.69 Aligned_cols=49 Identities=10% Similarity=0.081 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhCCCccc-cch-------hhhHHhHHHHHHHHHHhhhhh
Q 029363 44 KTLKSSIDKASKKLETMKIENPAKIS-TKK-------SKTKKIDRVETSLKESSRDLS 93 (194)
Q Consensus 44 ~klq~~~~~~~kkl~k~ke~~~~~~~-~~k-------~~~kkler~e~el~~~~~el~ 93 (194)
+||.++++++++++++.+. ..++++ ..+ +.++|++..++++..+...+.
T Consensus 803 ~rl~k~~~~~~~~~~~~~~-~l~~~~f~~~ap~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (862)
T 1gax_A 803 RRQEKRLKELLALAERSQR-KLASPGFREKAPKEVVEAEEARLKENLEQAERIREALS 859 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHTSTTTSSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-hccCchhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777788777777665 322111 111 345556666666666555554
No 39
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=29.60 E-value=80 Score=18.79 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 029363 19 VGISFCTAIICESISWLLIYRTNSYKTLK 47 (194)
Q Consensus 19 ~~ia~~t~l~se~ls~~LVyr~e~y~klq 47 (194)
..+|+..+++...+-|-+||+ +|+|++
T Consensus 7 ~ivalivalIiaIVVWtiv~i--eYrk~~ 33 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVWSIVII--EGRGGK 33 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 456677777778888988765 465554
No 40
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=29.49 E-value=1.2e+02 Score=20.56 Aligned_cols=17 Identities=6% Similarity=0.118 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029363 43 YKTLKSSIDKASKKLET 59 (194)
Q Consensus 43 y~klq~~~~~~~kkl~k 59 (194)
.+.+++++...+.+++.
T Consensus 45 h~~l~~ei~~~~~~v~~ 61 (118)
T 3uul_A 45 HETFMMELSAHQSSVGS 61 (118)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444443333
No 41
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=28.34 E-value=1.3e+02 Score=21.16 Aligned_cols=14 Identities=21% Similarity=0.582 Sum_probs=6.2
Q ss_pred hHHhHHHHHHHHHH
Q 029363 75 TKKIDRVETSLKES 88 (194)
Q Consensus 75 ~kkler~e~el~~~ 88 (194)
.+.|+++|+++...
T Consensus 57 ~~ei~~le~~i~rh 70 (84)
T 1gmj_A 57 AKEIERLQKEIERH 70 (84)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 42
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=28.30 E-value=50 Score=27.87 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 029363 42 SYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 42 ~y~klq~~~~~~~kkl~k~ke 62 (194)
+++.++.+++.++.+.+++++
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~ 75 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLME 75 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555554444
No 43
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=28.25 E-value=94 Score=28.67 Aligned_cols=33 Identities=9% Similarity=0.319 Sum_probs=25.0
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 28 ICESISWLLIYRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 28 ~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
..-+.+|+. -..+|.++.++++.+.++++++++
T Consensus 162 a~~Lc~WV~--A~~~Y~~l~~eV~pLk~eLk~lE~ 194 (536)
T 3err_A 162 AGPMVKWAI--AQLNYADMLKRVEPLRNELQKLED 194 (536)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hcchhHHHHHhhhhhHHHHHHHHH
Confidence 334567775 667899999998888888877666
No 44
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=27.91 E-value=48 Score=29.06 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=15.5
Q ss_pred hhHHhHHHHHHHHHHhhhhh
Q 029363 74 KTKKIDRVETSLKESSRDLS 93 (194)
Q Consensus 74 ~~kkler~e~el~~~~~el~ 93 (194)
+.||++.+|.|+++++.+|-
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~ 460 (471)
T 3mq9_A 441 GQKKVEELEGEITTLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888877764
No 45
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=27.47 E-value=1.6e+02 Score=22.67 Aligned_cols=47 Identities=23% Similarity=0.404 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhhhh---CCCccccchhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 45 TLKSSIDKASKKLETMKIE---NPAKISTKKSKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 45 klq~~~~~~~kkl~k~ke~---~~~~~~~~k~~~kkler~e~el~~~~~el~~~k 96 (194)
.|-.+++++|.-++.++.. |+. +...+.++.+.+++.....+|..++
T Consensus 25 ~LvtkVDDLQD~VE~LRkDV~~Rgv-----rP~~~ql~~v~kdi~~a~~eL~~m~ 74 (141)
T 3okq_A 25 TLLSKVDDLQDVIEIMRKDVAERRS-----QPAKKKLETVSKDLENAQADVLKLQ 74 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666653 333 1236677777777777777776554
No 46
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=27.45 E-value=1e+02 Score=25.66 Aligned_cols=52 Identities=10% Similarity=0.056 Sum_probs=31.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhh
Q 029363 39 RTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLF 95 (194)
Q Consensus 39 r~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~ 95 (194)
+.+.|..+++ ++..+++.+-... ..-++..+.++++++++++.++++.+...
T Consensus 259 ~~~dy~~ir~-l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (321)
T 3p7i_A 259 SDLQLVPIRQ-LALFKEMQSVKDN----KGLNEQDKLAKTTAIQAQLDDLDRLNNAL 310 (321)
T ss_dssp CGGGGHHHHH-HHHHHHHHHHHTC----TTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHHHHHHHHhcc----CCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666653 4444444433222 11234566789999999999988776543
No 47
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=26.14 E-value=1.2e+02 Score=18.67 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=19.0
Q ss_pred HHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 53 ASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 53 ~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k 96 (194)
+..++..+|++..+ .+.+..+|.|+..+.+.+...|
T Consensus 5 lkselqalkkegfs--------peelaaleselqalekklaalk 40 (48)
T 1g6u_A 5 LKSELQALKKEGFS--------PEELAALESELQALEKKLAALK 40 (48)
T ss_dssp HHHHHHHHHHTTCS--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666662333 4455556666665555555443
No 48
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.85 E-value=75 Score=23.03 Aligned_cols=17 Identities=12% Similarity=0.413 Sum_probs=9.1
Q ss_pred HHhHHHHHHHHHHhhhh
Q 029363 76 KKIDRVETSLKESSRDL 92 (194)
Q Consensus 76 kkler~e~el~~~~~el 92 (194)
+...+++.|+.+++..|
T Consensus 47 ~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 47 EEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555666666555444
No 49
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene}
Probab=25.83 E-value=65 Score=22.93 Aligned_cols=14 Identities=36% Similarity=0.494 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhhh
Q 029363 49 SIDKASKKLETMKI 62 (194)
Q Consensus 49 ~~~~~~kkl~k~ke 62 (194)
.++++|++|++++|
T Consensus 43 SleeIqkKLeAAeE 56 (87)
T 4f6r_C 43 SLEEIQKKLEAAEE 56 (87)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 46788899998887
No 50
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=25.66 E-value=1.4e+02 Score=21.91 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 17 TVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 17 ~I~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
+|.+++++.++..-.++... ++.+..+...++..++.-++.+..
T Consensus 9 vi~Ii~il~~ia~p~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~ 52 (144)
T 1oqw_A 9 VVAIIGILAAIAIPQYQNYV--ARSEGASALASVNPLKTTVEEALS 52 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666655543333332 444444445555555555555444
No 51
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=25.27 E-value=1e+02 Score=21.20 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHH
Q 029363 41 NSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKE 87 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~ 87 (194)
|+-.+|...++.+|-|+.++-.+ .. +...|-+.++.++|..++.
T Consensus 7 EKv~~LE~sld~LQTrfARLLaE-y~--ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 7 EKVTRMESSVDLLQTRFARILAE-YE--SMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHhcc
Confidence 45667777777777777775552 11 2244555667777777766
No 52
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=24.96 E-value=76 Score=24.05 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 029363 43 YKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 43 y~klq~~~~~~~kkl~k~ke 62 (194)
.+.+.+++.++..++..++.
T Consensus 84 l~~~~kE~~~lK~el~~~~~ 103 (138)
T 3hnw_A 84 IENKDKEIYDLKHELIAAQI 103 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444445455444444444
No 53
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=24.81 E-value=1.6e+02 Score=20.65 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 029363 41 NSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke 62 (194)
.+++.|+.+.+....+.+.++.
T Consensus 9 kKm~~lk~e~e~a~d~ae~~e~ 30 (101)
T 3u59_A 9 KKMQMLKLDKENAIDRAEQAEA 30 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444433
No 54
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=24.70 E-value=2e+02 Score=20.78 Aligned_cols=24 Identities=8% Similarity=0.160 Sum_probs=17.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhh
Q 029363 39 RTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 39 r~e~y~klq~~~~~~~kkl~k~ke 62 (194)
..|.|.+++.+++.+..+.+++++
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~ 33 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEE 33 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888887776666554
No 55
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=24.56 E-value=1.2e+02 Score=23.56 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 41 NSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k 96 (194)
++..+|..+++.++.+++++.. +.. -..+.+.++|.++.++-++|..-|
T Consensus 70 qrEd~yEeqIk~L~~kLKEAE~-RAE------~AERsv~kLEk~id~lEd~L~~~K 118 (155)
T 2efr_A 70 QKEDKYEEEIKVLSDKLKEAET-RAE------FAERSVTKLEKSIDDLEDELYAQK 118 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888888888888776 422 123444455555554444444443
No 56
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=24.30 E-value=92 Score=22.60 Aligned_cols=21 Identities=14% Similarity=0.403 Sum_probs=16.3
Q ss_pred hhhHHhHHHHHHHHHHhhhhh
Q 029363 73 SKTKKIDRVETSLKESSRDLS 93 (194)
Q Consensus 73 ~~~kkler~e~el~~~~~el~ 93 (194)
++.++++.+|.|++.++++|-
T Consensus 64 ~qq~~v~elqgEI~~Lnq~Lq 84 (99)
T 3ni0_A 64 EQQARIKELENEVTKLNQELE 84 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456788888889888887764
No 57
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=24.30 E-value=49 Score=28.31 Aligned_cols=25 Identities=4% Similarity=0.214 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHH
Q 029363 26 AIICESISWLLIYRTNSYKTLKSSID 51 (194)
Q Consensus 26 ~l~se~ls~~LVyr~e~y~klq~~~~ 51 (194)
.-+++....++- ..++|..+.+++.
T Consensus 149 ~y~~~~Y~~fl~-~~d~~~~~~~e~~ 173 (315)
T 2ve7_A 149 DYTIKCYESFMS-GADSFDEMNAELQ 173 (315)
T ss_dssp HHHHHHHHHHHH-TCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCcchhHHHHHHH
Confidence 334444444442 2366666655543
No 58
>3b2e_E Golgi to ER traffic protein 1; protein-protein interaction, receptor complex, hydrolase, TR protein, ADP binding, coild-coil; HET: ADP; 3.00A {Saccharomyces cerevisiae} PDB: 3zs8_C
Probab=29.98 E-value=16 Score=25.90 Aligned_cols=48 Identities=6% Similarity=0.165 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhCCCccccch-----hhhHHhHHHHHHHHHHhhhhhhhh
Q 029363 42 SYKTLKSSIDKASKKLETMKIENPAKISTKK-----SKTKKIDRVETSLKESSRDLSLFK 96 (194)
Q Consensus 42 ~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k-----~~~kkler~e~el~~~~~el~~~k 96 (194)
+++.|+.++.++.+++... .+-|. |-.++++++.+|+...++++...+
T Consensus 21 ~~~~Lk~Ei~~lk~E~~st-------SaQDEFAKWAKL~Rk~dKl~~ele~~~k~l~~~k 73 (84)
T 3b2e_E 21 KYLAKVKERHELKEFNNSI-------SAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSEN 73 (84)
Confidence 4555555555555544331 22333 667888889999998888887766
No 59
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=24.16 E-value=57 Score=20.95 Aligned_cols=22 Identities=9% Similarity=0.205 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 029363 41 NSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke 62 (194)
+.|.++.++.++++++++++++
T Consensus 34 ~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 34 KDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666666554
No 60
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=24.00 E-value=1.5e+02 Score=20.09 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=7.4
Q ss_pred hHHhHHHHHHHHHHhh
Q 029363 75 TKKIDRVETSLKESSR 90 (194)
Q Consensus 75 ~kkler~e~el~~~~~ 90 (194)
.+|++.+|+++.....
T Consensus 47 ~kKiq~lE~eld~~ee 62 (81)
T 1ic2_A 47 QKKLKGTEDELDKYSE 62 (81)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555544444333
No 61
>1o5h_A Formiminotetrahydrofolate cyclodeaminase; TM1560, structural genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 2.80A {Thermotoga maritima} SCOP: a.191.1.1
Probab=23.96 E-value=69 Score=26.16 Aligned_cols=44 Identities=9% Similarity=0.221 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 17 TVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 17 ~I~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
.-++.|+.++|.+-..+ |-+.+++|..+.++++++.++.+++++
T Consensus 40 AAl~gAlgaAL~~MVan--LT~gKkky~~~e~~~~~i~~~~~~l~~ 83 (214)
T 1o5h_A 40 GSVVGAMACALAEMVAN--FTRKKKGYEDVEPEMERIVEAMEEARL 83 (214)
T ss_dssp HHHHHHHHHHHHHHHHH--TTTTCTTCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HhcCccchhhHHHHHHHHHHHHHHHHH
Confidence 34455566666544433 446888998888888888888877666
No 62
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=23.65 E-value=49 Score=26.96 Aligned_cols=15 Identities=13% Similarity=0.124 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHhhh
Q 029363 77 KIDRVETSLKESSRD 91 (194)
Q Consensus 77 kler~e~el~~~~~e 91 (194)
+++++++++.+++++
T Consensus 264 ~~~~l~~~~~~l~~~ 278 (285)
T 3rvy_A 264 EIIKLREEIVELKEL 278 (285)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444443333
No 63
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=23.62 E-value=1e+02 Score=23.65 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=19.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhhh
Q 029363 40 TNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 40 ~e~y~klq~~~~~~~kkl~k~ke 62 (194)
-..|++|+++++.+++++.++..
T Consensus 58 y~EYk~Lhaev~~v~~~F~~Ld~ 80 (140)
T 1xaw_A 58 LQEYKSLQSVLDEINKELSRLDK 80 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999888887765
No 64
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=22.65 E-value=1.3e+02 Score=26.56 Aligned_cols=22 Identities=9% Similarity=0.187 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 029363 41 NSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke 62 (194)
+++++++.+.++++.+.++..+
T Consensus 35 ~~~r~~~~~~~~l~~~~n~~sk 56 (421)
T 1ses_A 35 REVQELKKRLQEVQTERNQVAK 56 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888887776
No 65
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=22.48 E-value=83 Score=23.72 Aligned_cols=25 Identities=8% Similarity=0.206 Sum_probs=22.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhh
Q 029363 38 YRTNSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 38 yr~e~y~klq~~~~~~~kkl~k~ke 62 (194)
=|.+.+.++.+|++.+.++++..|.
T Consensus 33 gd~~~i~qf~~E~~~l~k~I~~lk~ 57 (123)
T 2lf0_A 33 EAADKYAELEKEKATLEAEIARLRE 57 (123)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999888
No 66
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=22.34 E-value=1.6e+02 Score=24.18 Aligned_cols=51 Identities=6% Similarity=0.152 Sum_probs=30.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhh
Q 029363 39 RTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSL 94 (194)
Q Consensus 39 r~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~ 94 (194)
+.+.|..+++ ++..+++. +++. +..-++..+.+++.++++++.++++.+.-
T Consensus 250 ~~~~y~~ir~-l~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (310)
T 3n5l_A 250 DDDQLLPIRQ-LELFKQRT-DVAN---NANLGAEEKAAKLKALDEELAKLEKRMAE 300 (310)
T ss_dssp CGGGGHHHHH-HHHHHHHH-HHHH---CTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHHHHHH-HHhc---cCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666553 44443333 3333 11123456678899999999998877654
No 67
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=21.97 E-value=2.1e+02 Score=20.08 Aligned_cols=13 Identities=38% Similarity=0.572 Sum_probs=6.3
Q ss_pred HHhHHHHHHHHHH
Q 029363 76 KKIDRVETSLKES 88 (194)
Q Consensus 76 kkler~e~el~~~ 88 (194)
+++++....++++
T Consensus 65 ~~i~rhk~~i~~l 77 (84)
T 1gmj_A 65 KEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3455555555543
No 68
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=21.83 E-value=2.4e+02 Score=21.26 Aligned_cols=11 Identities=18% Similarity=0.223 Sum_probs=7.1
Q ss_pred cchhHHHHHHH
Q 029363 39 RTNSYKTLKSS 49 (194)
Q Consensus 39 r~e~y~klq~~ 49 (194)
.++.|+++++-
T Consensus 22 eseeyk~yk~A 32 (151)
T 2pih_A 22 ETEEVDFFKRA 32 (151)
T ss_dssp TBHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 67777766543
No 69
>2wvx_A Mannosidase, putative alpha-1,2-mannosidase; glycoside hydrolase family 92, GH92, hydrolase, BT3990; HET: MSE; 1.90A {Bacteroides thetaiotaomicron} PDB: 2wvz_A* 2ww0_A* 2ww1_A* 2ww3_A* 2wvx_B* 2wzs_A*
Probab=21.49 E-value=41 Score=32.44 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=18.1
Q ss_pred cCCCCCCCCCcc-hHHHHHHHHHHhh
Q 029363 139 HRGLQGDDATDC-SMAFLYFLCSISI 163 (194)
Q Consensus 139 hrgL~G~d~tdc-s~if~Y~Lcsm~~ 163 (194)
-.||+|+| || .+-.||++.+|++
T Consensus 617 p~GlpGne--D~GqMSAWyVfsalGf 640 (744)
T 2wvx_A 617 PDGYCGDE--DNGQTSAWYVFSALGF 640 (744)
T ss_dssp TTCBSSCC--TTTHHHHHHHHHHHTE
T ss_pred CCCcCCcc--cccHHHHHHHHHHhcC
Confidence 35899998 78 5688999987754
No 70
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=20.98 E-value=1.9e+02 Score=24.65 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 029363 41 NSYKTLKSSIDKASKKLETMKI 62 (194)
Q Consensus 41 e~y~klq~~~~~~~kkl~k~ke 62 (194)
..++..+++.++.+++++.+.+
T Consensus 124 ~~~ke~kk~fek~~~~yd~al~ 145 (385)
T 2q13_A 124 KEILTLKEVFQIASNDHDAAIN 145 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777666
No 71
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=20.91 E-value=2.2e+02 Score=19.88 Aligned_cols=11 Identities=0% Similarity=0.202 Sum_probs=5.5
Q ss_pred hHHHHHHHHHH
Q 029363 78 IDRVETSLKES 88 (194)
Q Consensus 78 ler~e~el~~~ 88 (194)
++++++++.++
T Consensus 61 ~~~l~~~~eel 71 (81)
T 1wt6_A 61 VRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44555555543
No 72
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=20.79 E-value=70 Score=29.31 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 029363 42 SYKTLKSSIDKASKKLETM 60 (194)
Q Consensus 42 ~y~klq~~~~~~~kkl~k~ 60 (194)
++++++.+.++++.+++++
T Consensus 41 ~~r~~~~~~~~l~~~rn~~ 59 (485)
T 3qne_A 41 EWVKLRFDLDEHNKKLNSV 59 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544443
No 73
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=20.57 E-value=1.7e+02 Score=27.26 Aligned_cols=52 Identities=8% Similarity=0.204 Sum_probs=31.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhhhh
Q 029363 39 RTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFK 98 (194)
Q Consensus 39 r~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k~k 98 (194)
+.+..++-|++-++.+.+.+..+.+. ..++++|+.+.||.+..+......=|
T Consensus 292 t~~elkqrqeee~r~~qew~~~hp~~--------~Aer~~e~a~ael~~a~k~~a~~~er 343 (551)
T 2b5u_A 292 SPDQVKQRQDEENRRQQEWDATHPVE--------AAERNYERARAELNQANEDVARNQER 343 (551)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhhcCcHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777666665555421 23556666666666666655555433
Done!