BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029364
MGLEVRVSRMSECISSIPLSNSVPVTKIRTLSGSKWRPKNGSVRNGNLQYAMCTFKPPSK
NQELFDELGFKDKFSVNSAEENSREIAEVKEEKREEEKDGSDGSSEKVKLRRGRQVMRRS
NLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVFFFI
CVVYFPVHDMVCKD

High Scoring Gene Products

Symbol, full name Information P value
AT2G38570 protein from Arabidopsis thaliana 5.7e-20

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029364
        (194 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2064184 - symbol:AT2G38570 "AT2G38570" species...   237  5.7e-20   1


>TAIR|locus:2064184 [details] [associations]
            symbol:AT2G38570 "AT2G38570" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002685 InterPro:IPR011033
            SUPFAM:SSF50346 IPI:IPI00527655 RefSeq:NP_181391.4 UniGene:At.13130
            UniGene:At.66360 ProteinModelPortal:F4IT02 SMR:F4IT02 PRIDE:F4IT02
            EnsemblPlants:AT2G38570.1 GeneID:818439 KEGG:ath:AT2G38570
            OMA:FNINSGI Uniprot:F4IT02
        Length = 328

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 48/66 (72%), Positives = 58/66 (87%)

Query:   112 RG-RQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLL 170
             RG +Q   RSNL+AKQV+SIQSA+SLGF+SQLWVDTTSW+VLVV+V+P+LLSGE ER LL
Sbjct:   112 RGFKQSTTRSNLVAKQVVSIQSALSLGFISQLWVDTTSWLVLVVDVKPSLLSGESERFLL 171

Query:   171 EDICQV 176
              DI +V
Sbjct:   172 TDIVRV 177


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      194       171   0.00090  108 3  11 22  0.36    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  160 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.37u 0.18s 13.55t   Elapsed:  00:00:00
  Total cpu time:  13.37u 0.18s 13.55t   Elapsed:  00:00:00
  Start:  Fri May 10 17:13:06 2013   End:  Fri May 10 17:13:06 2013

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