Query 029364
Match_columns 194
No_of_seqs 106 out of 176
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 19:14:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029364.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029364hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pm3_A MTH1895; unknown functi 99.7 6.2E-18 2.1E-22 126.0 7.5 78 106-184 10-95 (97)
2 3htr_A Uncharacterized PRC-bar 99.1 8.1E-11 2.8E-15 90.1 5.8 72 110-183 8-85 (120)
3 1eys_H Photosynthetic reaction 96.8 0.0017 5.6E-08 56.6 6.1 61 120-182 149-211 (259)
4 1rzh_H Reaction center protein 96.0 0.013 4.4E-07 51.3 6.7 60 119-182 145-205 (260)
5 2wjn_H Reaction center protein 95.8 0.013 4.3E-07 51.2 5.6 52 120-173 150-201 (258)
6 2qgg_A 16S rRNA-processing pro 60.4 28 0.00094 27.7 6.9 67 117-185 104-179 (182)
7 3h9n_A Ribosome maturation fac 59.5 54 0.0018 25.9 8.5 67 117-185 95-168 (177)
8 1qzg_A Protection of telomeres 43.4 21 0.0007 29.5 3.7 58 120-184 37-111 (187)
9 3lag_A Uncharacterized protein 41.5 79 0.0027 22.0 6.1 27 133-159 1-27 (98)
10 2dyi_A Probable 16S rRNA-proce 33.2 48 0.0017 25.8 4.2 65 117-184 89-156 (162)
11 1hy9_A Cocaine and amphetamine 25.3 31 0.001 22.7 1.5 18 5-22 19-36 (41)
12 2f1l_A 16S rRNA processing pro 20.1 1E+02 0.0036 24.6 4.0 67 117-185 113-184 (187)
No 1
>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein structure initiative; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.41.1.2
Probab=99.73 E-value=6.2e-18 Score=126.00 Aligned_cols=78 Identities=18% Similarity=0.095 Sum_probs=57.9
Q ss_pred cccccccccceEEe-cccccceeEeccCCceeeeeeeEEEECCCCEEEEEEECCC----CCCC-C-CeEEeccCcceec-
Q 029364 106 EKVKLRRGRQVMRR-SNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPN----LLSG-E-PERLLLEDICQVF- 177 (194)
Q Consensus 106 ~~~~~~~~~qmmKr-SdL~~KEVINi~dG~RLG~IsDL~VD~~sG~V~AIiV~~~----~f~g-e-~e~IpWe~I~KIG- 177 (194)
-+.|+.+...||++ |+|.+|+||| .+|++||.|.|+++|+++|+|.+++++.+ +|+. + ...|||++|++||
T Consensus 10 ~~~~~~~~~~~Mr~~seL~Gk~Vin-~dG~~LG~V~Dv~iD~~~G~I~~lvl~~~~~~~~~g~~~~~~~IPw~~V~~IG~ 88 (97)
T 1pm3_A 10 HSSGLVPRGSHMRIVEEMVGKEVLD-SSAKVIGKVKDVEVDIESQAIESLVLGKGGISEGLGLSKGETIVPYEMVKKIGD 88 (97)
T ss_dssp ----------CEETTTTSSSCEEEC-TTSCEEEEEEEEEEETTTTEEEEEEEECCC---------CEEEEEGGGEEEESS
T ss_pred ccCCCCCCCeEEEeehhCCCCEeEC-CCCCEEeEEEEEEEECCCCEEEEEEEcCCCeeccccCCCeeEEEEhhHheEECC
Confidence 45678888999999 9999999999 99999999999999999999999999765 3553 3 3359999999999
Q ss_pred eEEEEec
Q 029364 178 FFICVVY 184 (194)
Q Consensus 178 DVILVe~ 184 (194)
|+||++.
T Consensus 89 dvIi~~~ 95 (97)
T 1pm3_A 89 KILLKGP 95 (97)
T ss_dssp SEEECCT
T ss_pred EEEEEec
Confidence 8887764
No 2
>3htr_A Uncharacterized PRC-barrel domain protein; beta-barrel, photo-reaction-center domain, structural genomics, PSI-2; HET: MSE; 2.06A {Rhodopseudomonas palustris}
Probab=99.11 E-value=8.1e-11 Score=90.11 Aligned_cols=72 Identities=11% Similarity=0.072 Sum_probs=59.9
Q ss_pred cccccceEEecccccceeEeccCCceeeeeeeEEEECCCCEEEEEEECCC-CCC-CCCe-EEeccCcceec---eEEEEe
Q 029364 110 LRRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPN-LLS-GEPE-RLLLEDICQVF---FFICVV 183 (194)
Q Consensus 110 ~~~~~qmmKrSdL~~KEVINi~dG~RLG~IsDL~VD~~sG~V~AIiV~~~-~f~-ge~e-~IpWe~I~KIG---DVILVe 183 (194)
......||+.|+|.+++|+|. +|++||.|.|++||..+|+|.+++|..+ ||+ ++.. .|||+.|+ +. +.+.|+
T Consensus 8 ~~~~~~l~~~~~l~G~~V~~~-dG~~iG~V~dv~iD~~~G~i~~~vv~~GgflG~g~~~v~ip~~~l~-~~~~~~~~~v~ 85 (120)
T 3htr_A 8 TNETLKLIGSDKVQGTAVYGP-DGEKIGSIERVMIEKVSGRVSYAVLSFGGFLGIGDDHYPLPWPALK-YNVELGGYQVM 85 (120)
T ss_dssp CCBCSSEEEHHHHTTCEEECT-TSCEEEEEEEEEEETTTCBEEEEEEEESSBTTBSCEEEEECGGGCE-EETTTTEEECC
T ss_pred ccCCcceEehhhccCCEEEcC-CCCEEEEEEEEEEECCCCcEEEEEEECCCccCcCCEEEEeCHHHeE-EecCCCEEEeC
Confidence 456678999999999999999 9999999999999999999999999754 886 4544 49999995 43 455443
No 3
>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Probab=96.84 E-value=0.0017 Score=56.59 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=48.0
Q ss_pred cccccceeEeccCCceeeeeeeEEEECCCCEEEEEEECCCCCCCCCeEEe--ccCcceeceEEEE
Q 029364 120 SNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLL--LEDICQVFFFICV 182 (194)
Q Consensus 120 SdL~~KEVINi~dG~RLG~IsDL~VD~~sG~V~AIiV~~~~f~ge~e~Ip--We~I~KIGDVILV 182 (194)
++|.+..|.+. ||.++|.|.|++||..+|+|.-++|.-+ |+++...|| |.+|..-.+-|-|
T Consensus 149 ~dl~G~~Vya~-DGekIG~V~Dv~vD~~sG~VrYlVVdtG-~ggkkVLiPi~~~~Id~d~~~V~V 211 (259)
T 1eys_H 149 PDPRGMTVVGL-DGEVAGTVSDVWVDRSEPQIRYLEVEVA-ANKKKVLLPIGFSRFDKKARKVKV 211 (259)
T ss_dssp CCCTTCEEECS-SSCEEEEEEEEEEETTTTEEEEEEEEET-TTCCEEEEEGGGCEEEGGGTEEEC
T ss_pred CCCcCCEEEeC-CCCeeEEEEEEEEECCCCeEEEEEEEcC-CCCCcEEEecChhhccccCCEEEE
Confidence 67889999998 9999999999999999999999999777 555555566 5555543344555
No 4
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=96.02 E-value=0.013 Score=51.25 Aligned_cols=60 Identities=22% Similarity=0.253 Sum_probs=47.0
Q ss_pred ecccccceeEeccCCceeeeeeeEEEECCCCEEEEEEECCCCCCCCCeEEeccCcceec-eEEEE
Q 029364 119 RSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVF-FFICV 182 (194)
Q Consensus 119 rSdL~~KEVINi~dG~RLG~IsDL~VD~~sG~V~AIiV~~~~f~ge~e~IpWe~I~KIG-DVILV 182 (194)
-.++++..|... ||.++|.|.|+|||-.+|+|.-++|--+ +++...|||.-. +|- +-|-|
T Consensus 145 ~~d~~G~~Vyg~-DGe~iGsV~Dl~VD~~eg~VRYLVVdtG--ggrkVLLP~~~~-riD~~~VyV 205 (260)
T 1rzh_H 145 GKNPIGLPVRGC-DLEIAGKVVDIWVDIPEQMARFLEVELK--DGSTRLLPMQMV-KVQSNRVHV 205 (260)
T ss_dssp SCCCTTCEEEET-TSCEEEEEEEEEEETTTTEEEEEEEECT--TSCEEEEEGGGC-EECSSCEEE
T ss_pred CCCCCCCEeEcC-CCCeeEEEEEEEEECCCCEEEEEEEEeC--CCCEEEeeeEEE-EEcCCeEEE
Confidence 457889999998 9999999999999999999999999766 345555898643 333 44444
No 5
>2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 3t6e_H* 4ac5_H* 5prc_H* 6prc_H* 7prc_H* 3t6d_H* 3g7f_H*
Probab=95.76 E-value=0.013 Score=51.21 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=42.9
Q ss_pred cccccceeEeccCCceeeeeeeEEEECCCCEEEEEEECCCCCCCCCeEEeccCc
Q 029364 120 SNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDI 173 (194)
Q Consensus 120 SdL~~KEVINi~dG~RLG~IsDL~VD~~sG~V~AIiV~~~~f~ge~e~IpWe~I 173 (194)
.|+++..|... ||.++|.|.|+|||-.+|+|.-++|--+. +++...|||.-.
T Consensus 150 ~D~~G~~Vyg~-DGe~iGsV~Dl~VD~~eg~VRYLVVdtGg-ggrkVLLP~~~~ 201 (258)
T 2wjn_H 150 VDPRGLPVVAA-DGVEAGTVTDLWVDRSEHYFRYLELSVAG-SARTALIPLGFC 201 (258)
T ss_dssp CCCTTCEEECT-TSCEEEEEEEEEEETTTTEEEEEEEEETT-TTEEEEEEGGGC
T ss_pred CCCCCCEeEcC-CCCeeEEEEEEEEECCCCEEEEEEEEcCC-CCCEEEeeeEEE
Confidence 57889999988 99999999999999999999999996543 344445898643
No 6
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus}
Probab=60.37 E-value=28 Score=27.70 Aligned_cols=67 Identities=24% Similarity=0.277 Sum_probs=43.9
Q ss_pred EEecccccceeEecc---CCceeeeeeeEEEECCCCEEEEEEECCCCCCC-CCeEEecc-C-cceec---eEEEEecC
Q 029364 117 MRRSNLLAKQVISIQ---SAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSG-EPERLLLE-D-ICQVF---FFICVVYF 185 (194)
Q Consensus 117 mKrSdL~~KEVINi~---dG~RLG~IsDL~VD~~sG~V~AIiV~~~~f~g-e~e~IpWe-~-I~KIG---DVILVe~~ 185 (194)
.=..||.+-+|++.. +|..||.|.++. ++-.+-|..|.-...- .+ +...||++ + |.+|= -.|.|+.+
T Consensus 104 ~Y~~dLiGl~V~~~~~~~~g~~lG~V~~v~-~~gandvl~V~~~~~~-~g~ke~LIPf~~~~V~~VDl~~~~I~v~~p 179 (182)
T 2qgg_A 104 YYWSDLKGLTVLGLDDEEQEVNLGQIHELF-ETGANDVMVVRATPDS-IDSEERMIPWHKDVVQRVDLEAGRIYVNWG 179 (182)
T ss_dssp CCHHHHTTCEEEEECTTSCEEEEEEEEEEE-ECSSCEEEEEECCSSS-SSSCCEEEECCTTTEEEEETTTTEEEESCC
T ss_pred EeHHHhCCcEEEEcccCCCCcEEEEEEEEc-cCCCcEEEEEEeccCC-CCCeEEEeecChhhEeEEECCCCEEEEeCC
Confidence 447899999999974 789999999984 6666777666431110 13 34569993 2 44543 35666654
No 7
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=59.47 E-value=54 Score=25.89 Aligned_cols=67 Identities=21% Similarity=0.277 Sum_probs=44.9
Q ss_pred EEecccccceeEeccCCceeeeeeeEEEECCCCEEEEEEECCC-CCCCCCeEEec--cCcc-eec---eEEEEecC
Q 029364 117 MRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPN-LLSGEPERLLL--EDIC-QVF---FFICVVYF 185 (194)
Q Consensus 117 mKrSdL~~KEVINi~dG~RLG~IsDL~VD~~sG~V~AIiV~~~-~f~ge~e~IpW--e~I~-KIG---DVILVe~~ 185 (194)
.=..||.+-+|++. +|..||.|.++ +++-.+-|..|.-+.. -++++...||+ ++++ +|= -.|.|+.+
T Consensus 95 ~Y~~dLiGl~V~~~-~g~~lG~V~~v-~~~gandvl~V~~~~~~~~~~~e~LIP~v~~~~V~~VDl~~~~I~v~~p 168 (177)
T 3h9n_A 95 YYWHDLIGCTVVNL-EGYTMGTVTEM-METGSNDVLVVKANTKDAFGKQERLIPFLYEQVVKRVDLTTKTIEVDWD 168 (177)
T ss_dssp GGGGGTTTCEEEET-TCCEEEEEEEE-EESSSCEEEEEECCTTCTTCCSEEEEECCBTTTEEEEEGGGTEEEECCC
T ss_pred CCHHHhcCCEEEeC-CCCEEEEEEEE-eeCCCcEEEEEEeccccCCCCcEEEeeccchheEEEEeCCCCEEEEECC
Confidence 45789999999996 68999999998 4666777776664321 22334446997 4444 343 46777644
No 8
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=43.39 E-value=21 Score=29.51 Aligned_cols=58 Identities=19% Similarity=0.105 Sum_probs=37.5
Q ss_pred cccccceeEeccCCceeeeeeeEEEECCC--CE---EEEEEECCC------------CCCCCCeEEeccCcceeceEEEE
Q 029364 120 SNLLAKQVISIQSAMSLGFVSQLWVDTTS--WV---VLVVEVRPN------------LLSGEPERLLLEDICQVFFFICV 182 (194)
Q Consensus 120 SdL~~KEVINi~dG~RLG~IsDL~VD~~s--G~---V~AIiV~~~------------~f~ge~e~IpWe~I~KIGDVILV 182 (194)
++++....||+ +|+|.|.-.=..+ |. +..+.|... +|....+. +-.|.++||||++
T Consensus 37 ~~~~~g~~VNv-----iGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~--LP~V~~~GDIIlL 109 (187)
T 1qzg_A 37 ELQKKNTIVNL-----FGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGND--LPVIKQVGQPLLL 109 (187)
T ss_dssp SCCSSCEEEEE-----EEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSC--SCCCCSTTCEEEE
T ss_pred hhccCCCEEEE-----EEEEEEccCceecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhh--CCCCCCCCCEEEE
Confidence 56777788887 7899888774433 44 666666321 44433333 3367788999998
Q ss_pred ec
Q 029364 183 VY 184 (194)
Q Consensus 183 e~ 184 (194)
+-
T Consensus 110 ~r 111 (187)
T 1qzg_A 110 HQ 111 (187)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 9
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=41.45 E-value=79 Score=21.98 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=17.4
Q ss_pred CceeeeeeeEEEECCCCEEEEEEECCC
Q 029364 133 AMSLGFVSQLWVDTTSWVVLVVEVRPN 159 (194)
Q Consensus 133 G~RLG~IsDL~VD~~sG~V~AIiV~~~ 159 (194)
|..++-..++-+|-+.-+|.-+.++++
T Consensus 1 ~~~~~a~~~V~ien~~~rV~r~~i~PG 27 (98)
T 3lag_A 1 GMTVAAKSEIQIDNDEVRVTEWRLPPG 27 (98)
T ss_dssp CCCEECEEEEEEESSSEEEEEEEECTT
T ss_pred CCCccceeeEEEcCCeEEEEEEEECCC
Confidence 345556666677777777777777554
No 10
>2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, STRU genomics, NPPSFA; 2.00A {Thermus thermophilus} PDB: 3a1p_A 2dog_A
Probab=33.17 E-value=48 Score=25.84 Aligned_cols=65 Identities=17% Similarity=0.023 Sum_probs=40.2
Q ss_pred EEecccccceeEeccCCceeeeeeeEEEECCCCEEEEEEECCCC-CCCCCeEEec-cCcceec-eEEEEec
Q 029364 117 MRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNL-LSGEPERLLL-EDICQVF-FFICVVY 184 (194)
Q Consensus 117 mKrSdL~~KEVINi~dG~RLG~IsDL~VD~~sG~V~AIiV~~~~-f~ge~e~IpW-e~I~KIG-DVILVe~ 184 (194)
.=..||.+-+|+ .+|..||.|.++. ++-.+-|..|.-+.+- ...+...||+ +++++|= -.|.|+.
T Consensus 89 ~y~~dLiGl~V~--~~g~~lG~V~~v~-~~ga~dvl~V~~~~g~~~~~~e~LIPfv~~~V~VD~~~I~v~~ 156 (162)
T 2dyi_A 89 YYYFALIGLPVY--VEGRQVGEVVDIL-DAGAQDVLIIRGVGERLRDRAERLVPLQAPYVRVEEGSIHVDP 156 (162)
T ss_dssp CCHHHHTTCEEE--ETTEEEEEEEEEE-EETTEEEEEEEECCSSGGGSTTEEEETTCTTEEECSSCEEECC
T ss_pred EeHHHhCCeEEE--ECCeEEEEEEEEc-cCCCceEEEEEeCCCCcCcCcEEEEeccccEEEEECCEEEEeC
Confidence 447899999999 7899999999985 6656677666544310 0003445775 3333332 3444543
No 11
>1hy9_A Cocaine and amphetamine regulated transcript protein; cysteine knot, signaling protein; NMR {Homo sapiens} SCOP: g.3.17.1
Probab=25.29 E-value=31 Score=22.70 Aligned_cols=18 Identities=11% Similarity=0.427 Sum_probs=12.9
Q ss_pred eeeeeecccccCCccCCC
Q 029364 5 VRVSRMSECISSIPLSNS 22 (194)
Q Consensus 5 ~~~~~mc~c~~s~~l~~s 22 (194)
-|+-+||||...+.-.+.
T Consensus 19 ~RigklC~C~rg~~Cn~f 36 (41)
T 1hy9_A 19 ARIGKLCDCPRGTSCNSF 36 (41)
T ss_dssp SSEEECCBCCTTCCBCTT
T ss_pred cccchhcCCCCCCcchhh
Confidence 378899999986654333
No 12
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=20.12 E-value=1e+02 Score=24.63 Aligned_cols=67 Identities=19% Similarity=0.104 Sum_probs=40.7
Q ss_pred EEecccccceeEeccCCceeeeeeeEEEECCCCEEEEEEECCCCCCCCCeEEec-cCcc-eec---eEEEEecC
Q 029364 117 MRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLL-EDIC-QVF---FFICVVYF 185 (194)
Q Consensus 117 mKrSdL~~KEVINi~dG~RLG~IsDL~VD~~sG~V~AIiV~~~~f~ge~e~IpW-e~I~-KIG---DVILVe~~ 185 (194)
.=..||.+-+|++. +|..||.|.++. ++-.+-|..|.-+.+--..+...||+ ++++ +|= -.|.|+.+
T Consensus 113 fY~~DLIGl~V~~~-~g~~lG~V~~v~-~~ganDvlvV~~~~g~~~~ke~LIPfv~~~V~~VDle~~~I~V~~p 184 (187)
T 2f1l_A 113 YYWHQLEGLKVIDQ-GRQLLGVIDHLL-ETGANDVMVVKPCAGSLDDRERLLPYTGQCVLSIDLAAGEMRVDWD 184 (187)
T ss_dssp CCHHHHTTCEEEET-TSCEEEEEEEEE-CCSSSCEEEEECCTTSSSSCCEEEECSTTTEEEEETTTTEEEECCC
T ss_pred EeHHHcCCeEEEeC-CCCEEEEEEEEc-cCCCcEEEEEEeCCCCCCCcEEEEechHHhcCEEeCCCCEEEEeCC
Confidence 45789999999986 688899999984 65566776654332100003445885 3333 332 35656543
Done!