BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029365
(194 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P74367|PS11_SYNY3 Photosystem II 11 kDa protein OS=Synechocystis sp. (strain PCC 6803
/ Kazusa) GN=slr1645 PE=1 SV=2
Length = 134
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 89 SGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAG 148
SG L Y + ++ TLRE++ + P+D N + D+A+ I DY+S +R + G
Sbjct: 27 SGTGLTGNYSQDTLTVIATLREAI-DLPQDAPNRQEVQDTARGQINDYISRYRRKGDAGG 85
Query: 149 EESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEK 192
+S+ ++ A+ SLA +Y+ G + P+P ++K + + AE+
Sbjct: 86 LKSFTTMQTALNSLAGYYTSYG-ARPIPEKLKKRLQLEFTQAER 128
>sp|Q9LR64|Y1360_ARATH Thylakoid lumenal protein At1g03610, chloroplastic OS=Arabidopsis
thaliana GN=At1g03600 PE=1 SV=1
Length = 174
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 97 YLKSARELVKTLRESL---KEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYV 153
Y+K ++ +R +L K DP N +E+ +++ +R +K + G+ S+
Sbjct: 74 YIKDTSAVISKVRSTLSMQKTDP----NVADAVAELREASNSWVAKYRKEKALLGKASFR 129
Query: 154 ELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 194
++ A+ +++ Y GP+AP+P + K+ IL +++TAEK L
Sbjct: 130 DIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKAL 170
>sp|E0T5V0|FTSP_EDWTF Cell division protein FtsP OS=Edwardsiella tarda (strain FL6-60)
GN=ftsP PE=3 SV=1
Length = 472
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 28/124 (22%)
Query: 25 LKAASSRRHVISCSSTALVAILTFNCGLAPLPVQAE--------------DMSNGQD--- 67
L A+++RR+++ S ++ + GL P P+QA+ DMS G++
Sbjct: 234 LNASNARRYLLQLSDGRPFFVIASDQGLLPAPLQADTLPLAPGERREVLIDMSKGEEISI 293
Query: 68 --EKEEGVVGAIKSLFDPNEKTKSGKVL---PKAYLKSARELVKTLRESLKEDP---KDI 119
+ G++ ++ LF+P+ S +VL P L + TL L DP D+
Sbjct: 294 TAGEAAGIMDRLRGLFEPSSMLVSTRVLTLRPTGLLPL---MTDTLPARLAADPLPEGDV 350
Query: 120 ANFR 123
N R
Sbjct: 351 VNNR 354
>sp|Q8LAM0|UBP4_ARATH Ubiquitin carboxyl-terminal hydrolase 4 OS=Arabidopsis thaliana
GN=UBP4 PE=1 SV=2
Length = 365
Score = 34.3 bits (77), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 36 SCSSTALVAILTFNCGLAPLPVQA-EDMSNGQDEKEEGVVGAIKSLFDP--NEKTKSGKV 92
+C +++ L F AP Q E +N + + EE ++ + LF ++K K+G +
Sbjct: 31 TCYCNSVLQALYF---CAPFREQLLEHYANNKADAEENLLTCLADLFSQISSQKKKTGVI 87
Query: 93 LPKAYLKSARELVKTLRESLKEDPKDIANFRRN 125
PK +++ ++ + R + +D + N+ N
Sbjct: 88 APKRFVQRLKKQNELFRSYMHQDAHEFLNYLLN 120
>sp|Q8MI28|LBN_BOVIN Limbin OS=Bos taurus GN=EVC2 PE=2 SV=1
Length = 1209
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 16/135 (11%)
Query: 35 ISCSSTALVAILTFNCGLAPLPVQAEDMSNGQDEKEEGV--------VGAIKSLFDPNEK 86
I S T + +L+ L +Q + + DE + V V +IK D + K
Sbjct: 502 IQSSETRMQGLLSTASAQLTLLIQKHERAGYLDEDQMQVLLERAQTEVFSIKQKLDNDLK 561
Query: 87 TKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRG---Q 143
+ K+ K +K RE+++ +E +E IA A A E YL WRG +
Sbjct: 562 QEKKKLHQKLIIKRRREMLQKHKEQRREQL-SIAE----ASGAAEDAGQYLGQWRGLMAE 616
Query: 144 KTVAGEESYVELEKA 158
+ A EE L++A
Sbjct: 617 HSAALEELQERLDQA 631
>sp|Q65DX0|ATPF_BACLD ATP synthase subunit b OS=Bacillus licheniformis (strain DSM 13 /
ATCC 14580) GN=atpF PE=3 SV=1
Length = 172
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 64 NGQDEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLK---EDPKD-- 118
N E+E+ + G I S NE+ K +A LK ARE ++L E+ K E KD
Sbjct: 43 NIMKEREDYITGEISSAEKKNEEAKKLIEEQQALLKEAREESQSLIENAKKLGEQQKDEI 102
Query: 119 IANFRRNADSAKESIRDYLSNWRGQKTVA 147
I R+ A+ KES R + R Q A
Sbjct: 103 IKAARQEAERMKESARSEIVKERDQAVTA 131
>sp|P58319|LTAE_ECO57 Low specificity L-threonine aldolase OS=Escherichia coli O157:H7
GN=ltaE PE=3 SV=1
Length = 333
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 85 EKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIAN 121
E T +GKVLP+ YLK A E + +L D I N
Sbjct: 136 ENTHNGKVLPREYLKDAWEFTRERNLALHVDGARIFN 172
>sp|P75823|LTAE_ECOLI Low specificity L-threonine aldolase OS=Escherichia coli (strain
K12) GN=ltaE PE=1 SV=1
Length = 333
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 85 EKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIAN 121
E T +GKVLP+ YLK A E + +L D I N
Sbjct: 136 ENTHNGKVLPREYLKEAWEFTRERNLALHVDGARIFN 172
>sp|Q8U0H4|RTCB_PYRFU tRNA-splicing ligase RtcB OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rtcB PE=3 SV=1
Length = 970
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 67 DEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNA 126
+E +G I +DP +K K ++ AYLK +E VK R E K I N
Sbjct: 442 EENIRNFLGKINYEYDPKKKAKG--LIAYAYLK-FKESVKKERRKAMEISKKIYEETGNI 498
Query: 127 DSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAG 170
D A ++++D ++ ++T+ E + K + F + G
Sbjct: 499 DRAYKAVKDIVNRRFVERTIYEGERNPRVPKNFLTFEEFAKERG 542
>sp|Q6DAA8|FTSP_ERWCT Cell division protein FtsP OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=ftsP PE=3 SV=1
Length = 471
Score = 30.4 bits (67), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 19/88 (21%)
Query: 25 LKAASSRRHVISCSSTALVAILTFNCGLAPLPVQAEDMSNGQDEKEE------------- 71
L A++SRR+V+ S + ++ + GL P P+ +S E+ E
Sbjct: 234 LNASNSRRYVMRLSDGRAMNVIASDQGLLPAPMAVNQLSLAPGERREILIDMSQGEEVTL 293
Query: 72 ------GVVGAIKSLFDPNEKTKSGKVL 93
G++ ++ LF+P+ S ++L
Sbjct: 294 TAGESAGIMDRLRGLFEPSSILISTQIL 321
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.126 0.342
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,290,564
Number of Sequences: 539616
Number of extensions: 2565996
Number of successful extensions: 7172
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 7156
Number of HSP's gapped (non-prelim): 56
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)