Query 029365
Match_columns 194
No_of_seqs 89 out of 91
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 19:15:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029365.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029365hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kmf_A Photosystem II 11 kDa p 100.0 3.7E-44 1.3E-48 280.7 10.0 104 89-194 8-111 (115)
2 2y6x_A PSB27, photosystem II 1 100.0 9.1E-44 3.1E-48 277.9 9.6 103 90-194 5-107 (113)
3 2pq4_B Periplasmic nitrate red 60.4 5.3 0.00018 24.8 2.2 13 29-41 3-15 (35)
4 1tex_A STF0 sulfotransferase; 57.1 5.9 0.0002 33.3 2.6 54 96-150 233-286 (287)
5 4fnv_A Heparinase III protein, 53.3 34 0.0012 32.7 7.4 66 124-189 178-245 (702)
6 2qgu_A Probable signal peptide 44.9 68 0.0023 25.9 7.1 66 104-189 38-103 (211)
7 4ebb_A Dipeptidyl peptidase 2; 44.7 16 0.00056 32.7 3.6 31 115-145 425-455 (472)
8 3vup_A Beta-1,4-mannanase; TIM 42.6 53 0.0018 25.3 5.8 50 126-175 134-220 (351)
9 2gmf_A Granulocyte-macrophage 41.2 11 0.00036 29.9 1.6 25 151-175 69-93 (127)
10 2dt7_A Splicing factor 3A subu 40.2 44 0.0015 21.0 4.1 30 146-176 6-36 (38)
11 3us6_A Histidine-containing ph 38.9 43 0.0015 25.8 4.8 36 95-130 47-82 (153)
12 1lbq_A Ferrochelatase; rossman 32.9 37 0.0013 30.0 3.9 56 132-189 23-90 (362)
13 4awe_A Endo-beta-D-1,4-mannana 30.8 77 0.0026 24.4 5.0 52 124-175 151-224 (387)
14 3n2z_B Lysosomal Pro-X carboxy 30.6 39 0.0013 30.3 3.7 28 115-142 418-445 (446)
15 3rh2_A Hypothetical TETR-like 28.4 1.7E+02 0.0058 21.2 8.5 68 120-187 112-184 (212)
16 1i5n_A Chemotaxis protein CHEA 27.9 1.9E+02 0.0066 21.7 11.9 97 93-189 8-125 (146)
17 2db7_A Hairy/enhancer-OF-split 26.7 1.2E+02 0.004 20.9 4.9 34 156-190 25-58 (64)
18 4hfk_B Putative uncharacterize 26.5 1.6E+02 0.0056 22.4 6.0 52 95-156 31-82 (105)
19 3mfq_A TROA, high-affinity zin 25.6 97 0.0033 25.8 5.1 48 90-141 105-153 (282)
20 3rkv_A Putative peptidylprolyl 25.5 64 0.0022 22.5 3.4 38 102-139 114-151 (162)
21 3hcn_A Ferrochelatase, mitocho 24.6 90 0.0031 27.6 4.9 58 132-189 20-85 (359)
22 1yvi_A Histidine-containing ph 24.5 1.2E+02 0.0041 22.8 5.0 38 95-132 48-85 (149)
23 1pq4_A Periplasmic binding pro 23.8 12 0.00041 31.5 -0.9 65 90-158 134-206 (291)
24 3gi1_A LBP, laminin-binding pr 23.8 84 0.0029 26.2 4.4 62 90-155 123-192 (286)
25 2kp7_A Crossover junction endo 23.6 23 0.00079 25.5 0.7 58 132-189 17-80 (87)
26 2p32_A Heat shock 70 kDa prote 22.7 1.9E+02 0.0064 21.0 5.6 51 90-140 40-91 (120)
27 2prs_A High-affinity zinc upta 22.0 97 0.0033 25.6 4.4 96 90-189 118-221 (284)
28 3cx3_A Lipoprotein; zinc-bindi 21.6 98 0.0033 25.6 4.3 95 90-189 121-224 (284)
29 2o1e_A YCDH; alpha-beta protei 21.3 98 0.0034 26.2 4.4 65 90-158 134-206 (312)
30 4ax2_A RAP1B; toxin, resistanc 21.3 94 0.0032 24.8 3.9 66 96-167 55-128 (142)
31 3hh8_A Metal ABC transporter s 21.2 1E+02 0.0034 25.9 4.4 49 90-142 125-174 (294)
32 3g2f_A Bone morphogenetic prot 21.0 76 0.0026 25.1 3.4 42 103-148 287-328 (336)
33 3ujp_A Mn transporter subunit; 20.2 1.1E+02 0.0037 26.1 4.4 49 90-142 132-181 (307)
No 1
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=100.00 E-value=3.7e-44 Score=280.74 Aligned_cols=104 Identities=30% Similarity=0.566 Sum_probs=101.0
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhcCCCCCchHHHhhHHHHHHHHHHHHHhccCCCCCCCcchHHHHHHHHHHHHhhhhh
Q 029365 89 SGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSK 168 (194)
Q Consensus 89 sg~~LPkdY~~dT~~VV~tLReaL~ldp~D~~~~~~aa~~AKe~IndyvsrYRr~~~V~G~~SFttM~TALNsLAGhYss 168 (194)
+.+.||++|++||++||++||++|++ |+|++++++++++||++|||||++|||++.|+|++||+|||||||+|||||++
T Consensus 8 ~~~~L~~~Y~~dT~~Vv~~lr~~l~l-~~d~~~~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sf~tm~tAlNaLAGHY~s 86 (115)
T 2kmf_A 8 SGTGLTGNYSQDTLTVIATLREAIDL-PQDAPNRQEVQDTARGQINDYISRYRRKGDAGGLKSFTTMQTALNSLAGYYTS 86 (115)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHHHHHS-CTTCTTHHHHHHHHHHHHHHHHHHTHHHHCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCccHHHHHHHHHHHHHHHHcC-CCCCccHHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHHhh
Confidence 35779999999999999999999998 89999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHhcC
Q 029365 169 AGPSAPLPGEVKSEILNDLDTAEKFL 194 (194)
Q Consensus 169 ~Gp~rPLPeklK~RLlqEL~~AE~aL 194 (194)
|| ++|||+|+|+||++||++||++|
T Consensus 87 ~g-~~PlPek~k~Rl~~el~~AE~al 111 (115)
T 2kmf_A 87 YG-ARPIPEKLKKRLQLEFTQAERSI 111 (115)
T ss_dssp HS-SCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cC-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 98 99999999999999999999986
No 2
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=100.00 E-value=9.1e-44 Score=277.93 Aligned_cols=103 Identities=22% Similarity=0.425 Sum_probs=99.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCCCchHHHhhHHHHHHHHHHHHHhccCCCCCCCcchHHHHHHHHHHHHhhhhhc
Q 029365 90 GKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKA 169 (194)
Q Consensus 90 g~~LPkdY~~dT~~VV~tLReaL~ldp~D~~~~~~aa~~AKe~IndyvsrYRr~~~V~G~~SFttM~TALNsLAGhYss~ 169 (194)
.+.||++|++||++||++||++|+| |+|++++++++++||++|||||++|||++.|+|++||+|||||||+|||||++|
T Consensus 5 ~~~L~~~Y~~dT~~Vv~~lr~~l~l-~~d~~~~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sfttm~tAlNaLAGHY~s~ 83 (113)
T 2y6x_A 5 PTGLTGNFREDTLALISSLREAIAL-PENDPNKKAAQAEARKKLNDFFALYRRDDSLRSLSSFMTMQTALNSLAGHYSSY 83 (113)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHHS-CTTCTTHHHHHHHHHHHHHHHHHHHTTCHHHHTSHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCccHHHHHHHHHHHHHHHHcC-CCCCccHHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHHhhc
Confidence 3569999999999999999999999 789999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhcC
Q 029365 170 GPSAPLPGEVKSEILNDLDTAEKFL 194 (194)
Q Consensus 170 Gp~rPLPeklK~RLlqEL~~AE~aL 194 (194)
| ++|||+|+|+||++||++||++|
T Consensus 84 g-~~PlPek~k~Rl~~el~~AE~al 107 (113)
T 2y6x_A 84 P-NRPLPEKLKARLEQEFKQVELAL 107 (113)
T ss_dssp T-TSCCCHHHHHHHHHHHHHHHHHH
T ss_pred C-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 8 99999999999999999999986
No 3
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=60.41 E-value=5.3 Score=24.84 Aligned_cols=13 Identities=31% Similarity=0.434 Sum_probs=10.2
Q ss_pred hhhhHHHhhhhhh
Q 029365 29 SSRRHVISCSSTA 41 (194)
Q Consensus 29 ~srr~~l~~~~~~ 41 (194)
.+||+||..++++
T Consensus 3 lsRR~FLK~~aaa 15 (35)
T 2pq4_B 3 LSRRSFMKANAVA 15 (35)
T ss_dssp CCSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 5899999877654
No 4
>1tex_A STF0 sulfotransferase; sulfolipid, sulfation, TREH trehalose-2-sulfate; HET: TRE; 2.60A {Mycobacterium smegmatis} SCOP: c.37.1.5
Probab=57.09 E-value=5.9 Score=33.34 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchHHHhhHHHHHHHHHHHHHhccCCCCCCCcc
Q 029365 96 AYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEE 150 (194)
Q Consensus 96 dY~~dT~~VV~tLReaL~ldp~D~~~~~~aa~~AKe~IndyvsrYRr~~~V~G~~ 150 (194)
+.++|-..+++.|-+-|.+++...+. ......+-...++|+.|||.+-..+|++
T Consensus 233 DLv~dP~~~l~~l~~FLGl~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 286 (287)
T 1tex_A 233 YLWRNLTEVVGTVLEALGQDPRLAPK-PVLERQADQRSDEWVERYRRDAQRDGLP 286 (287)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTCC---------------CCSTTTC-C-CCSCCC
T ss_pred HHHhCHHHHHHHHHHHhCCCccccCC-chhhcccCCchHHHHHHHHHHHHhcCCC
Confidence 34556667788888888885544443 2344455555699999999999999876
No 5
>4fnv_A Heparinase III protein, heparitin sulfate lyase; toroid fold, -sandwich fold, heparan sulfate degradation; 1.60A {Bacteroides thetaiotaomicron}
Probab=53.32 E-value=34 Score=32.72 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCCcchHHHHHHHHHHH--HhhhhhcCCCCCCChHHHHHHHHHHHH
Q 029365 124 RNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSL--ASFYSKAGPSAPLPGEVKSEILNDLDT 189 (194)
Q Consensus 124 ~aa~~AKe~IndyvsrYRr~~~V~G~~SFttM~TALNsL--AGhYss~Gp~rPLPeklK~RLlqEL~~ 189 (194)
+.++.++++|.||+..+-....+++.-....|.++++.+ ..+|.-+....-++++.+.++++.|.+
T Consensus 178 kYa~~a~~ll~dWi~~np~~~g~~~~~~W~~l~~a~Rli~wi~~~~~l~~s~~~t~e~~~~~l~sL~~ 245 (702)
T 4fnv_A 178 KYIQSWIEVYKNWIENNPKPTTGPNTTSWWQLQVSTRIGDQVQLLEYFKNSVNFTPEWLSTFLVEFAE 245 (702)
T ss_dssp HHHHHHHHHHHHHHHHCCCCSSSCCSSTTCHHHHHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcCCCCCccceeHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 368899999999999986555555556677899888754 345544433335889999999888753
No 6
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=44.91 E-value=68 Score=25.93 Aligned_cols=66 Identities=12% Similarity=0.102 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCCCCchHHHhhHHHHHHHHHHHHHhccCCCCCCCcchHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHH
Q 029365 104 LVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEI 183 (194)
Q Consensus 104 VV~tLReaL~ldp~D~~~~~~aa~~AKe~IndyvsrYRr~~~V~G~~SFttM~TALNsLAGhYss~Gp~rPLPeklK~RL 183 (194)
+++.+-..|.- +......-.+..++.|++.+..| |.--+-|-.+|+.||++ ++++-|++.
T Consensus 38 ~~~~vl~~lk~---~~~~~~~~~~~~~~~v~~~l~p~-----------~D~~~~a~~vLG~~wr~------at~~Qr~~F 97 (211)
T 2qgu_A 38 AVDDVLATIKG---DPDLRGGNLQKVFQLVDQKIVPR-----------ADFKRTTQIAMGRFWSQ------ATPEQQQQI 97 (211)
T ss_dssp HHHHHHHHHHT---CHHHHTTCHHHHHHHHHHHTGGG-----------BCHHHHHHHHHGGGTTT------SCHHHHHHH
T ss_pred HHHHHHHHHhC---CccccccCHHHHHHHHHHHhhhh-----------cCHHHHHHHHHhHhHhh------CCHHHHHHH
Confidence 44445555553 22222233445667777777666 33344566678888776 578888888
Q ss_pred HHHHHH
Q 029365 184 LNDLDT 189 (194)
Q Consensus 184 lqEL~~ 189 (194)
.+.|.+
T Consensus 98 ~~~F~~ 103 (211)
T 2qgu_A 98 QDGFKS 103 (211)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887764
No 7
>4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A*
Probab=44.70 E-value=16 Score=32.69 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=24.4
Q ss_pred CCCCchHHHhhHHHHHHHHHHHHHhccCCCC
Q 029365 115 DPKDIANFRRNADSAKESIRDYLSNWRGQKT 145 (194)
Q Consensus 115 dp~D~~~~~~aa~~AKe~IndyvsrYRr~~~ 145 (194)
.|.|++.+.++++...+.|+.||..||.+++
T Consensus 425 ~~~Dp~~l~~ar~~~~~~i~~Wl~~~~~~~~ 455 (472)
T 4ebb_A 425 HPEDPASVVEARKLEATIIGEWVKAARREQQ 455 (472)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4688899999999999999999999986543
No 8
>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai}
Probab=42.62 E-value=53 Score=25.26 Aligned_cols=50 Identities=12% Similarity=0.260 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhccCCCCCCC-------------------------------------cchHHHHHHHHHHHHhhhhh
Q 029365 126 ADSAKESIRDYLSNWRGQKTVAG-------------------------------------EESYVELEKAIRSLASFYSK 168 (194)
Q Consensus 126 a~~AKe~IndyvsrYRr~~~V~G-------------------------------------~~SFttM~TALNsLAGhYss 168 (194)
++..++.++..+.|||..|.|-+ .....++...++.++.+-++
T Consensus 134 ~~~~~~~~~~~v~r~kn~psi~~w~l~NEp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~ 213 (351)
T 3vup_A 134 QSYIDKALKPIVNHVKGHVALGGWDLMNEPEGMMIPDKHNAEKCYDTTALKNSGAGWAGNKYLYQDILRFLNWQADAIKT 213 (351)
T ss_dssp HHHHHHTHHHHHHHTTTCTTBCCEEEEECGGGGBCCSCCCSSGGGCCGGGTTSSTTTTCSCBCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEecccccccccccccccccccccchhhcccccccccccchhhHHHHHHHHHHHhhc
Confidence 44456667888999999998863 23457788888899998888
Q ss_pred cCCCCCC
Q 029365 169 AGPSAPL 175 (194)
Q Consensus 169 ~Gp~rPL 175 (194)
..|++++
T Consensus 214 ~dp~~lv 220 (351)
T 3vup_A 214 TDPGALV 220 (351)
T ss_dssp HSTTCCE
T ss_pred cCCCCee
Confidence 8888886
No 9
>2gmf_A Granulocyte-macrophage colony-stimulating factor; granulocyte-macrophage colony stimulating growth factor; 2.40A {Homo sapiens} SCOP: a.26.1.2 PDB: 1csg_A 3cxe_B*
Probab=41.22 E-value=11 Score=29.88 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHhhhhhcCCCCCC
Q 029365 151 SYVELEKAIRSLASFYSKAGPSAPL 175 (194)
Q Consensus 151 SFttM~TALNsLAGhYss~Gp~rPL 175 (194)
|++-+..+|+-+|.||..+-|..|=
T Consensus 69 slt~Lkg~LtmmA~hYkq~CppTpE 93 (127)
T 2gmf_A 69 SLTKLKGPLTMMASHYKQHCPPTPE 93 (127)
T ss_dssp GGGGGHHHHHHHHHHHHHHSCCCCC
T ss_pred hHHHhccHHHHHHHHHHhcCCCCCC
Confidence 8999999999999999999876653
No 10
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.23 E-value=44 Score=20.97 Aligned_cols=30 Identities=20% Similarity=0.559 Sum_probs=24.6
Q ss_pred CCCcchHHHHHHHHHHHHhhhhhcCCCCC-CC
Q 029365 146 VAGEESYVELEKAIRSLASFYSKAGPSAP-LP 176 (194)
Q Consensus 146 V~G~~SFttM~TALNsLAGhYss~Gp~rP-LP 176 (194)
.+|-.-|..-|.-|+.+=.||..| |+.+ +|
T Consensus 6 lsg~~~f~~FY~rlk~Ike~Hrr~-P~~~~~~ 36 (38)
T 2dt7_A 6 ISGPNEFAEFYNRLKQIKEFHRKH-PNEICVP 36 (38)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHSC-CSSCCCC
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhC-CCccccC
Confidence 345556999999999999999997 8877 55
No 11
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=38.93 E-value=43 Score=25.82 Aligned_cols=36 Identities=11% Similarity=0.270 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCchHHHhhHHHHH
Q 029365 95 KAYLKSARELVKTLRESLKEDPKDIANFRRNADSAK 130 (194)
Q Consensus 95 kdY~~dT~~VV~tLReaL~ldp~D~~~~~~aa~~AK 130 (194)
..|++++.+.+..|+.+++..|.|-...++.+...|
T Consensus 47 ~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LK 82 (153)
T 3us6_A 47 SLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQFK 82 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 478999999999999999865567777666555554
No 12
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=32.90 E-value=37 Score=30.02 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=41.9
Q ss_pred HHHHHHHhccCCCCCCCcchHHHHHHHHHH---------HHhhhhhcCCCCCCCh---HHHHHHHHHHHH
Q 029365 132 SIRDYLSNWRGQKTVAGEESYVELEKAIRS---------LASFYSKAGPSAPLPG---EVKSEILNDLDT 189 (194)
Q Consensus 132 ~IndyvsrYRr~~~V~G~~SFttM~TALNs---------LAGhYss~Gp~rPLPe---klK~RLlqEL~~ 189 (194)
.|+.|+.++..++.|-..+.+ ++.-|+- ++.+|.+.|--.||.. +..+.|.+.|++
T Consensus 23 ~V~~fL~~~~~d~~vi~~p~~--~~~~l~~~I~~~R~~k~~~~Y~~ig~gSPL~~~t~~q~~~L~~~L~~ 90 (362)
T 1lbq_A 23 ETYDFLYQLFADNDLIPISAK--YQKTIAKYIAKFRTPKIEKQYREIGGGSPIRKWSEYQATEVCKILDK 90 (362)
T ss_dssp GHHHHHHHHTTCCSSSCCCSS--SHHHHHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccccCCHH--HHHHHhhhcCccchHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHh
Confidence 678899999999998888766 5655554 8999999998888864 344456666653
No 13
>4awe_A Endo-beta-D-1,4-mannanase; hydrolase, endo-mannanase, glycosyl hydrolase, GH5; HET: NAG; 1.40A {Neurospora sitophila}
Probab=30.81 E-value=77 Score=24.45 Aligned_cols=52 Identities=6% Similarity=0.171 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCC----------------------cchHHHHHHHHHHHHhhhhhcCCCCCC
Q 029365 124 RNADSAKESIRDYLSNWRGQKTVAG----------------------EESYVELEKAIRSLASFYSKAGPSAPL 175 (194)
Q Consensus 124 ~aa~~AKe~IndyvsrYRr~~~V~G----------------------~~SFttM~TALNsLAGhYss~Gp~rPL 175 (194)
..++..++.++..+.+||..|.|-+ ...-..++..++.++.+..+.-|++|+
T Consensus 151 ~~~~~~~~~~~~~~~r~k~~p~I~~w~l~NEp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~Dp~~lv 224 (387)
T 4awe_A 151 KIKEAFKRYVKAMVTRYRDSEAILAWELANEARCGADGTRNLPRSEKGCTTETVTGWIEEMSAYVKSLDGNHLV 224 (387)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTEEEEESCBSCCSCCCTTTSCCCCSSSCCHHHHHHHHHHHHHHHHHHCSSSEE
T ss_pred HHHHHHHHHHHHHHhhcCCCcceeEeccCCCCCCCCCccccccccccccchHHHHHHHHHHHHHHHHhCCCCcE
Confidence 4567778889999999999988742 223466777788888888887787765
No 14
>3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens}
Probab=30.56 E-value=39 Score=30.34 Aligned_cols=28 Identities=4% Similarity=0.152 Sum_probs=23.0
Q ss_pred CCCCchHHHhhHHHHHHHHHHHHHhccC
Q 029365 115 DPKDIANFRRNADSAKESIRDYLSNWRG 142 (194)
Q Consensus 115 dp~D~~~~~~aa~~AKe~IndyvsrYRr 142 (194)
++.|++.+.++++...+.|+.||..|+.
T Consensus 418 ~~~Dp~~l~~ar~~~~~~i~~Wl~~~~~ 445 (446)
T 3n2z_B 418 NALDPMSVLLARSLEVRHMKNWIRDFYD 445 (446)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4678888888888888888888888864
No 15
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=28.36 E-value=1.7e+02 Score=21.20 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=40.7
Q ss_pred hHHHhhHHHHHHHHHHHHHhccCCCCCCCcc-hHHHHHHHHHHHHhhhhh----cCCCCCCChHHHHHHHHHH
Q 029365 120 ANFRRNADSAKESIRDYLSNWRGQKTVAGEE-SYVELEKAIRSLASFYSK----AGPSAPLPGEVKSEILNDL 187 (194)
Q Consensus 120 ~~~~~aa~~AKe~IndyvsrYRr~~~V~G~~-SFttM~TALNsLAGhYss----~Gp~rPLPeklK~RLlqEL 187 (194)
..+.+..+...+.+.+++.+......+.... ....+-..+-.+..+|.. ..+..+++++.-.++...+
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (212)
T 3rh2_A 112 ARYLKVQQAVLEQSIAVLNQLKKDGILQIEDERIADLADTIKMIIGFWISYKLTQSSIATISKASLYEGLLRV 184 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSBCCCGGGHHHHHHHHHHHHHHHHHHHHHHSSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhCCcccccHHHHHHHHHHH
Confidence 3455556667777788888887766665533 244455555445555543 3467777777666655543
No 16
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=27.93 E-value=1.9e+02 Score=21.68 Aligned_cols=97 Identities=15% Similarity=0.143 Sum_probs=57.3
Q ss_pred CchHHHHHHHHHHHHHHHHhcC---CCCCc---hHHHhhHHHHH---------------HHHHHHHHhccCCCCCCCcch
Q 029365 93 LPKAYLKSARELVKTLRESLKE---DPKDI---ANFRRNADSAK---------------ESIRDYLSNWRGQKTVAGEES 151 (194)
Q Consensus 93 LPkdY~~dT~~VV~tLReaL~l---dp~D~---~~~~~aa~~AK---------------e~IndyvsrYRr~~~V~G~~S 151 (194)
+=..|++++.+.+..|.+.|.. +|.|. ....+++-..| ..+-+.+..+|.........-
T Consensus 8 ll~~Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~~~~~~l 87 (146)
T 1i5n_A 8 FYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTDI 87 (146)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCCCCCHHH
Confidence 3368999999999999998842 45454 23333333333 234666777887666555556
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHHHH
Q 029365 152 YVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDT 189 (194)
Q Consensus 152 FttM~TALNsLAGhYss~Gp~rPLPeklK~RLlqEL~~ 189 (194)
+..+..++..|...-.......+.+...-+.+++.|..
T Consensus 88 ~~~l~~~~D~l~~~l~~~~~~~~~~~~~~~~l~~~L~~ 125 (146)
T 1i5n_A 88 INLFLETKDIMQEQLDAYKNSEEPDAASFEYICNALRQ 125 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Confidence 66677766666555544322334444444445555543
No 17
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=26.75 E-value=1.2e+02 Score=20.87 Aligned_cols=34 Identities=9% Similarity=0.201 Sum_probs=26.6
Q ss_pred HHHHHHHHhhhhhcCCCCCCChHHHHHHHHHHHHH
Q 029365 156 EKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTA 190 (194)
Q Consensus 156 ~TALNsLAGhYss~Gp~rPLPeklK~RLlqEL~~A 190 (194)
...+++++-|-++ .+.-...+.+|.||+.+|..-
T Consensus 25 ~eC~~EV~rfLs~-~eg~d~~d~~r~rLl~HL~~~ 58 (64)
T 2db7_A 25 RECLAEVARYLSI-IEGLDASDPLRVRLVSHLNNY 58 (64)
T ss_dssp HHHHHHHHHHHHH-TSCCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCCCCcchHHHHHHHHHHHHH
Confidence 3588889888888 466555577999999999763
No 18
>4hfk_B Putative uncharacterized protein; amidase, hydrolase; 2.10A {Enterobacter cloacae}
Probab=26.54 E-value=1.6e+02 Score=22.36 Aligned_cols=52 Identities=21% Similarity=0.155 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCchHHHhhHHHHHHHHHHHHHhccCCCCCCCcchHHHHH
Q 029365 95 KAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELE 156 (194)
Q Consensus 95 kdY~~dT~~VV~tLReaL~ldp~D~~~~~~aa~~AKe~IndyvsrYRr~~~V~G~~SFttM~ 156 (194)
++.-+||..-+..++|-... |-+. ..+++++|+.|+++==+++ .+ ..|+.|.
T Consensus 31 ~~~~~DA~sSasA~lE~~~y---d~Ea----~~~~~~Li~kyLa~~y~~~--~~-~~f~llK 82 (105)
T 4hfk_B 31 KSLKEDADASAAAWLEASNL---PAEN----FEKADEVIVSLLKQKVGGT--EP-GHYQILK 82 (105)
T ss_dssp HHHHHHHHHHHHHHHHHCCS---CHHH----HHHHHHHHHHHHTSCCBCS--SS-SCCHHHH
T ss_pred hhhhHHHHHHHHHHHHHHhC---CHHH----hHHHHHHHHHHHccccCCC--CC-CcchHHH
Confidence 57889999999999998887 5544 3669999999998522322 22 5666665
No 19
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=25.59 E-value=97 Score=25.79 Aligned_cols=48 Identities=15% Similarity=0.139 Sum_probs=35.5
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcC-CCCCchHHHhhHHHHHHHHHHHHHhcc
Q 029365 90 GKVLPKAYLKSARELVKTLRESLKE-DPKDIANFRRNADSAKESIRDYLSNWR 141 (194)
Q Consensus 90 g~~LPkdY~~dT~~VV~tLReaL~l-dp~D~~~~~~aa~~AKe~IndyvsrYR 141 (194)
=|-=|.++ ..+++++.+.|.. ||.+...+++..+.-.+.+.+.-..|+
T Consensus 105 vWldp~~~----~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~ld~~~~ 153 (282)
T 3mfq_A 105 FWFSIPLY----KSAVAVASEELQKLLPAKAEMIQKNTEKYQAQLDDLHAWVE 153 (282)
T ss_dssp GGGSHHHH----HHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHH----HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36566666 6777788887774 888888888888777777777766666
No 20
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=25.50 E-value=64 Score=22.45 Aligned_cols=38 Identities=16% Similarity=0.192 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCCCCchHHHhhHHHHHHHHHHHHHh
Q 029365 102 RELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSN 139 (194)
Q Consensus 102 ~~VV~tLReaL~ldp~D~~~~~~aa~~AKe~Indyvsr 139 (194)
.+-+..++.+|+++|.|..........+++.++++-.+
T Consensus 114 ~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 114 DEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKAD 151 (162)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888887777656555566666666655433
No 21
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=24.61 E-value=90 Score=27.60 Aligned_cols=58 Identities=14% Similarity=0.246 Sum_probs=37.8
Q ss_pred HHHHHHHhccCCCCCCCcchHHHHH-----HHHHHHHhhhhhcCCCCCCC---hHHHHHHHHHHHH
Q 029365 132 SIRDYLSNWRGQKTVAGEESYVELE-----KAIRSLASFYSKAGPSAPLP---GEVKSEILNDLDT 189 (194)
Q Consensus 132 ~IndyvsrYRr~~~V~G~~SFttM~-----TALNsLAGhYss~Gp~rPLP---eklK~RLlqEL~~ 189 (194)
.|+.|+.+..+++.|-..+...-+. .=....+.+|.+.|-..||- ++..+.|.+.|++
T Consensus 20 ~V~~fL~~~~~d~~Vi~~P~~~~L~~~I~~~R~~k~~~~Y~~igggSPL~~~t~~Q~~~L~~~L~~ 85 (359)
T 3hcn_A 20 DVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDE 85 (359)
T ss_dssp GHHHHHHHHHTCTTTCCCTTHHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCcccccchHHHHhHHhcccchHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhh
Confidence 5777888888888777776422221 11247899999998778886 3455556666653
No 22
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=24.53 E-value=1.2e+02 Score=22.83 Aligned_cols=38 Identities=11% Similarity=0.185 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCchHHHhhHHHHHHH
Q 029365 95 KAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKES 132 (194)
Q Consensus 95 kdY~~dT~~VV~tLReaL~ldp~D~~~~~~aa~~AKe~ 132 (194)
..|++|+...+..|+++++..+.|....++.+...|-+
T Consensus 48 ~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGs 85 (149)
T 1yvi_A 48 TLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQLKGS 85 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhH
Confidence 47899999999999999996445777766666665543
No 23
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=23.85 E-value=12 Score=31.46 Aligned_cols=65 Identities=14% Similarity=0.187 Sum_probs=39.6
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcC-CCCCchHHHhhHHHHHHHHHHHHHhcc-------CCCCCCCcchHHHHHHH
Q 029365 90 GKVLPKAYLKSARELVKTLRESLKE-DPKDIANFRRNADSAKESIRDYLSNWR-------GQKTVAGEESYVELEKA 158 (194)
Q Consensus 90 g~~LPkdY~~dT~~VV~tLReaL~l-dp~D~~~~~~aa~~AKe~IndyvsrYR-------r~~~V~G~~SFttM~TA 158 (194)
=|-=|.++ ..+++++.+.|.. ||.+...+++.++.-.+.+.+.-..|+ +.+-|..-+.|.=+...
T Consensus 134 ~Wldp~~~----~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~ 206 (291)
T 1pq4_A 134 IWLSPTLV----KRQATTIAKELAELDPDNRDQYEANLAAFLAELERLNQELGQILQPLPQRKFIVFHPSWAYFARD 206 (291)
T ss_dssp GGGCHHHH----HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCEEEESSCCCHHHHHH
T ss_pred ccCCHHHH----HHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEECCchHHHHHH
Confidence 45567777 4555556655553 888888777777777666666555554 34445555555544443
No 24
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=23.82 E-value=84 Score=26.25 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=38.7
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcC-CCCCchHHHhhHHHHHHHHHHHHHhcc-------CCCCCCCcchHHHH
Q 029365 90 GKVLPKAYLKSARELVKTLRESLKE-DPKDIANFRRNADSAKESIRDYLSNWR-------GQKTVAGEESYVEL 155 (194)
Q Consensus 90 g~~LPkdY~~dT~~VV~tLReaL~l-dp~D~~~~~~aa~~AKe~IndyvsrYR-------r~~~V~G~~SFttM 155 (194)
=|-=|..+ ..+++++.+.|.. ||.+...+++.++.-.+.+.+.-..|+ +.+-|...+.|.=+
T Consensus 123 vWldp~~~----~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf 192 (286)
T 3gi1_A 123 TWTDPVLA----GEEAVNIAKELGRLDPKHKDSYTKNAKAFKKEAEQLTEEYTQKFKKVRSKTFVTQHTAFSYL 192 (286)
T ss_dssp GGGSHHHH----HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEESCCHHH
T ss_pred eecCHHHH----HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCchHHH
Confidence 46667777 4566666666654 888888887777777666666655554 33344444555443
No 25
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=23.57 E-value=23 Score=25.53 Aligned_cols=58 Identities=17% Similarity=0.308 Sum_probs=34.6
Q ss_pred HHHHHHHhccCCCCCCCcchHHHHHHHHHHHHhhhhhcCCC------CCCChHHHHHHHHHHHH
Q 029365 132 SIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPS------APLPGEVKSEILNDLDT 189 (194)
Q Consensus 132 ~IndyvsrYRr~~~V~G~~SFttM~TALNsLAGhYss~Gp~------rPLPeklK~RLlqEL~~ 189 (194)
++-+|+..|+..-.-.+.-.+.+.+.|+++|-.|=..+..- .=+=+++-++|.+.|.+
T Consensus 17 lf~~wL~e~~~~a~~r~~k~~~~Y~KA~~sLk~~P~~i~s~~e~~~L~giG~ki~~~L~e~L~~ 80 (87)
T 2kp7_A 17 LFVRWLTEWRDEAASRGRHTRFVFQKALRSLQRYPLPLRSGKEAKILQHFGDRLCRMLDEKLKQ 80 (87)
T ss_dssp HHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHCCSCCCSHHHHHTCTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhCCCCCCCHHHHHHhhcccHHHHHHHHHHHHH
Confidence 45566666665444446677889999999998764332100 01225666666666654
No 26
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=22.65 E-value=1.9e+02 Score=20.97 Aligned_cols=51 Identities=8% Similarity=0.105 Sum_probs=39.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCC-CCCchHHHhhHHHHHHHHHHHHHhc
Q 029365 90 GKVLPKAYLKSARELVKTLRESLKED-PKDIANFRRNADSAKESIRDYLSNW 140 (194)
Q Consensus 90 g~~LPkdY~~dT~~VV~tLReaL~ld-p~D~~~~~~aa~~AKe~IndyvsrY 140 (194)
+..|+.+-.+...+.|+.|++.|+-+ ..|...+....++..+.+..++.+.
T Consensus 40 ~dkl~~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~~~~~~i~~k~ 91 (120)
T 2p32_A 40 KDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKL 91 (120)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688888888899999999998742 1366778888889999988888764
No 27
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=22.00 E-value=97 Score=25.59 Aligned_cols=96 Identities=15% Similarity=0.065 Sum_probs=51.7
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcC-CCCCchHHHhhHHHHHHHHHHHHHhcc-------CCCCCCCcchHHHHHHHHHH
Q 029365 90 GKVLPKAYLKSARELVKTLRESLKE-DPKDIANFRRNADSAKESIRDYLSNWR-------GQKTVAGEESYVELEKAIRS 161 (194)
Q Consensus 90 g~~LPkdY~~dT~~VV~tLReaL~l-dp~D~~~~~~aa~~AKe~IndyvsrYR-------r~~~V~G~~SFttM~TALNs 161 (194)
=|-=|.++. .+++++.+.|.. ||.+...+++.++.-.+.+.+.-..|+ +.+-|...+.|.=+....+-
T Consensus 118 ~Wldp~~~~----~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~yGl 193 (284)
T 2prs_A 118 LWLSPEIAR----ATAVAIHGKLVELMPQSRAKLDANLKDFEAQLASTETQVGNELAPLKGKGYFVFHDAYGYFEKQFGL 193 (284)
T ss_dssp GGGCHHHHH----HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCCEEEEESCCHHHHHHHTC
T ss_pred ccCCHHHHH----HHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEECccHHHHHHHCCC
Confidence 366677774 555555555553 888887777777666666655555444 44455555666555444321
Q ss_pred HHhhhhhcCCCCCCChHHHHHHHHHHHH
Q 029365 162 LASFYSKAGPSAPLPGEVKSEILNDLDT 189 (194)
Q Consensus 162 LAGhYss~Gp~rPLPeklK~RLlqEL~~ 189 (194)
=--....-.|...-+.+.-.+|.+.+++
T Consensus 194 ~~~~~~~~~~~~eps~~~l~~l~~~ik~ 221 (284)
T 2prs_A 194 TPLGHFTVNPEIQPGAQRLHEIRTQLVE 221 (284)
T ss_dssp CCCEEEESSTTSCCCHHHHHHHHHHHHH
T ss_pred eEeEeeccCCCCCCCHHHHHHHHHHHHH
Confidence 1000011123455555555666555543
No 28
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=21.56 E-value=98 Score=25.62 Aligned_cols=95 Identities=15% Similarity=0.195 Sum_probs=51.4
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcC-CCCCchHHHhhHHHHHHHHHHHHHhcc-------CCCCCCCcchHHHHHHHHHH
Q 029365 90 GKVLPKAYLKSARELVKTLRESLKE-DPKDIANFRRNADSAKESIRDYLSNWR-------GQKTVAGEESYVELEKAIRS 161 (194)
Q Consensus 90 g~~LPkdY~~dT~~VV~tLReaL~l-dp~D~~~~~~aa~~AKe~IndyvsrYR-------r~~~V~G~~SFttM~TALNs 161 (194)
=|-=|.++ ..+++++.+.|.. ||.+...+++.++.-.+.+.+.-..|+ +.+-|...+.|.=+....+-
T Consensus 121 ~Wldp~~~----~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~yGl 196 (284)
T 3cx3_A 121 TWLDPEKA----GEEAQIIADKLSEVDSEHKETYQKNAQAFIKKAQELTKKFQPKFEKATQKTFVTQHTAFSYLAKRFGL 196 (284)
T ss_dssp GGGSHHHH----HHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCEEEEESCCHHHHHHTTC
T ss_pred cccCHHHH----HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCchHHHHHHcCC
Confidence 46667777 4555555555553 888888777777766666665555444 44455555665554443321
Q ss_pred H-HhhhhhcCCCCCCChHHHHHHHHHHHH
Q 029365 162 L-ASFYSKAGPSAPLPGEVKSEILNDLDT 189 (194)
Q Consensus 162 L-AGhYss~Gp~rPLPeklK~RLlqEL~~ 189 (194)
= .+. ..-.|....+.+.-.+|.+.+++
T Consensus 197 ~~~~~-~~~~~~~eps~~~l~~l~~~ik~ 224 (284)
T 3cx3_A 197 NQLGI-AGISPEQEPSPRQLTEIQEFVKT 224 (284)
T ss_dssp CEEEE-ECSSTTCCCCSHHHHHHHHHHHH
T ss_pred EEeec-cCCCCCCCCCHHHHHHHHHHHHH
Confidence 0 011 11123445555555566555543
No 29
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=21.35 E-value=98 Score=26.20 Aligned_cols=65 Identities=15% Similarity=0.255 Sum_probs=39.3
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcC-CCCCchHHHhhHHHHHHHHHHHHHhcc-------CCCCCCCcchHHHHHHH
Q 029365 90 GKVLPKAYLKSARELVKTLRESLKE-DPKDIANFRRNADSAKESIRDYLSNWR-------GQKTVAGEESYVELEKA 158 (194)
Q Consensus 90 g~~LPkdY~~dT~~VV~tLReaL~l-dp~D~~~~~~aa~~AKe~IndyvsrYR-------r~~~V~G~~SFttM~TA 158 (194)
=|-=|.++ ..+++++.+.|.. ||.+...+++..+.-.+.+.+.-..|+ +.+-|...+.|.=+...
T Consensus 134 vWldp~n~----~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yfa~~ 206 (312)
T 2o1e_A 134 VWLSPVLA----QKEVKNITAQIVKQDPDNKEYYEKNSKEYIAKLQDLDKLYRTTAKKAEKKEFITQHTAFGYLAKE 206 (312)
T ss_dssp GGGSHHHH----HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCEEEESSCTTHHHHHH
T ss_pred cccCHHHH----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEECCchHHHHHH
Confidence 46667777 4555555555553 888888777777776666665555554 34445555555544433
No 30
>4ax2_A RAP1B; toxin, resistance protein, helical fold, S-SAD phasing; 1.88A {Serratia marcescens}
Probab=21.29 E-value=94 Score=24.80 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchHHHhhHHHHHHHHHHHHHh-ccCCCCCCCcchHHHHH-------HHHHHHHhhhh
Q 029365 96 AYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSN-WRGQKTVAGEESYVELE-------KAIRSLASFYS 167 (194)
Q Consensus 96 dY~~dT~~VV~tLReaL~ldp~D~~~~~~aa~~AKe~Indyvsr-YRr~~~V~G~~SFttM~-------TALNsLAGhYs 167 (194)
+.-+|+..=+..|+|-... |-++ +-++.+.+|..|++| |..++.+....-|..|. ..|+.|..=|.
T Consensus 55 ~~~~DA~sSasAllEwt~y---D~E~---~~~ai~~LV~kYLar~~~~~~~~~~~~k~~lLKCLDLYHS~ELd~l~kk~V 128 (142)
T 4ax2_A 55 AFSLDAARTANAMREWMPF---DIES---GDEKINVLIDKYKSRINEFHSETKDKSQGVTLNCLRLYHSPELDKLSRQLI 128 (142)
T ss_dssp HHHHHHHHHHHHHGGGSCB---CHHH---HHHHHHHHHHHHTTCCCCCCC----CCCCHHHHHHHHHHCHHHHHHHHHTB
T ss_pred hhhHhHHHHHHHHHHhccC---Chhh---CcHHHHHHHHHHHhccCCCCcccccccccceeehhhhhcCHHHHHHHHHHh
Confidence 5678888888999988887 4433 345678899999998 66655555444455442 45666666554
No 31
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=21.20 E-value=1e+02 Score=25.91 Aligned_cols=49 Identities=12% Similarity=0.127 Sum_probs=35.7
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcC-CCCCchHHHhhHHHHHHHHHHHHHhccC
Q 029365 90 GKVLPKAYLKSARELVKTLRESLKE-DPKDIANFRRNADSAKESIRDYLSNWRG 142 (194)
Q Consensus 90 g~~LPkdY~~dT~~VV~tLReaL~l-dp~D~~~~~~aa~~AKe~IndyvsrYRr 142 (194)
=|-=|.++ ..+++++.+.|.. ||.+...+++.++.-.+.+.+.-..||.
T Consensus 125 vWldp~~~----~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~ 174 (294)
T 3hh8_A 125 AWLNLENG----IIYSKNIAKQLIAKDPKNKETYEKNLKAYVAKLEKLDKEAKS 174 (294)
T ss_dssp GGGSHHHH----HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeCCHHHH----HHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37667777 5556666666654 8999988888888888888887777763
No 32
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=21.03 E-value=76 Score=25.09 Aligned_cols=42 Identities=21% Similarity=0.418 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCCCCchHHHhhHHHHHHHHHHHHHhccCCCCCCC
Q 029365 103 ELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAG 148 (194)
Q Consensus 103 ~VV~tLReaL~ldp~D~~~~~~aa~~AKe~IndyvsrYRr~~~V~G 148 (194)
++.+-|+..|..||.+-+ .++++.+.+.+.+..|.++..+.-
T Consensus 287 ~l~~li~~cl~~dP~~Rp----s~~e~l~~L~~ll~~~~~~~~~~~ 328 (336)
T 3g2f_A 287 SLKETIEDCWDQDAEARL----TAQXAEERMAELMMIWERNKSVSP 328 (336)
T ss_dssp HHHHHHHHHSCSSGGGSC----CHHHHHHHHHHHHHCCCC------
T ss_pred HHHHHHHHHhcCChhhCc----chHHHHHHHHHHHHHHHhcccCCC
Confidence 455666777887655544 477888889999999999877654
No 33
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=20.19 E-value=1.1e+02 Score=26.13 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=35.8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhc-CCCCCchHHHhhHHHHHHHHHHHHHhccC
Q 029365 90 GKVLPKAYLKSARELVKTLRESLK-EDPKDIANFRRNADSAKESIRDYLSNWRG 142 (194)
Q Consensus 90 g~~LPkdY~~dT~~VV~tLReaL~-ldp~D~~~~~~aa~~AKe~IndyvsrYRr 142 (194)
=|-=|.+. ..+++++.+.|. +||.+...+++.++.-.+.+.+.-..|+.
T Consensus 132 vWldp~n~----~~~a~~I~~~L~~~DP~~a~~Y~~Na~~~~~~L~~Ld~~~~~ 181 (307)
T 3ujp_A 132 AWMSPRNA----LVYVENIRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGA 181 (307)
T ss_dssp CTTCHHHH----HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHH----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777 555666666665 38989888888888888888777777753
Done!