Query 029366
Match_columns 194
No_of_seqs 139 out of 249
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 11:46:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15087 hemolysin; Provisiona 99.5 3E-14 6.6E-19 120.3 6.8 69 76-144 10-93 (219)
2 COG1272 Predicted membrane pro 99.5 6.3E-14 1.4E-18 120.8 5.9 68 76-143 15-97 (226)
3 TIGR01065 hlyIII channel prote 99.2 2.2E-11 4.9E-16 101.2 6.2 64 81-144 1-79 (204)
4 PF03006 HlyIII: Haemolysin-II 98.8 1.4E-08 3.1E-13 82.0 6.7 68 78-145 2-87 (222)
5 KOG4243 Macrophage maturation- 98.0 1.1E-05 2.3E-10 72.2 5.1 73 70-142 72-165 (298)
6 PF05875 Ceramidase: Ceramidas 94.4 0.21 4.6E-06 42.7 7.8 73 81-156 25-103 (262)
7 KOG0748 Predicted membrane pro 90.8 0.4 8.7E-06 42.9 4.7 25 120-144 98-125 (286)
8 KOG2329 Alkaline ceramidase [L 40.5 61 0.0013 29.7 5.2 63 79-144 31-99 (276)
9 PF12825 DUF3818: Domain of un 35.0 75 0.0016 29.4 5.0 58 114-174 29-91 (341)
10 cd06571 Bac_DnaA_C C-terminal 23.2 1.5E+02 0.0032 21.7 3.9 43 113-155 33-75 (90)
11 PF09125 COX2-transmemb: Cytoc 22.1 1.3E+02 0.0028 20.3 3.0 20 105-124 15-34 (38)
12 COG4181 Predicted ABC-type tra 21.6 1E+02 0.0023 27.5 3.2 60 28-87 127-189 (228)
13 PF13965 SID-1_RNA_chan: dsRNA 21.0 1.7E+02 0.0037 29.0 4.9 58 100-160 310-368 (570)
No 1
>PRK15087 hemolysin; Provisional
Probab=99.50 E-value=3e-14 Score=120.35 Aligned_cols=69 Identities=22% Similarity=0.314 Sum_probs=57.4
Q ss_pred CcchhhHHhhhhhhHHHHHhh-------------cC-CcchhHHHHHHHHHHHHHHHHHhhhccCC-hhHHHHHHHhhhH
Q 029366 76 DLHLLERVANVLTSLPFIALG-------------LQ-TPRKNLNMTLYANSLVGVGVTSSLYHSSR-GKLRKYLRWADYA 140 (194)
Q Consensus 76 dyS~~EEiANavTH~~giAlg-------------~~-~~~kivs~sIYg~SLIlLy~ASTLYHa~~-gr~K~~LRrlDHa 140 (194)
.|++.||.+|++||++++.++ .. +...+++..+|++|++++|++||+||..+ ++.|+++||+||+
T Consensus 10 ~~~~~eE~~N~~tH~ig~~~a~~~~~~l~~~~~~~~~~~~~~~~~~vy~~s~~~l~~~StlYH~~~~~~~~~~~~rlDh~ 89 (219)
T PRK15087 10 GYSLAEEIANSISHGIGLVFGIVGLVLLLVQAVDANADATAITSYSLYGGSMILLFLASTLYHAIPHQRAKRWLKKFDHC 89 (219)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHccHH
Confidence 388999999999997663211 01 34577899999999999999999999985 8899999999999
Q ss_pred HHHh
Q 029366 141 MIAT 144 (194)
Q Consensus 141 AIA~ 144 (194)
+|-.
T Consensus 90 ~I~l 93 (219)
T PRK15087 90 AIYL 93 (219)
T ss_pred HHHH
Confidence 9853
No 2
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=99.46 E-value=6.3e-14 Score=120.79 Aligned_cols=68 Identities=28% Similarity=0.249 Sum_probs=59.8
Q ss_pred CcchhhHHhhhhhhHHHHHhh-------------cCCcchhHHHHHHHHHHHHHHHHHhhhccCC--hhHHHHHHHhhhH
Q 029366 76 DLHLLERVANVLTSLPFIALG-------------LQTPRKNLNMTLYANSLVGVGVTSSLYHSSR--GKLRKYLRWADYA 140 (194)
Q Consensus 76 dyS~~EEiANavTH~~giAlg-------------~~~~~kivs~sIYg~SLIlLy~ASTLYHa~~--gr~K~~LRrlDHa 140 (194)
.|+..||.+|++||++++.+. ..++...++..+|+.|++++|++||+||..+ .|.|.++||+||+
T Consensus 15 ~~~~~~e~~n~~tHlvGail~i~~l~~l~~~a~~~~~~~~~~~~~iy~~sl~~l~~~St~YH~~~~~~~~k~~~rk~DH~ 94 (226)
T COG1272 15 SYSWHEEIANAITHLIGAILAIVGLVLLLVYALITGSALAVIVFSIYGLSLFLLFLVSTLYHSIPNGQKAKAILRKFDHS 94 (226)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHhhhhhHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHccHH
Confidence 789999999999998773222 2367888999999999999999999999996 5999999999999
Q ss_pred HHH
Q 029366 141 MIA 143 (194)
Q Consensus 141 AIA 143 (194)
+|-
T Consensus 95 ~I~ 97 (226)
T COG1272 95 GIY 97 (226)
T ss_pred HHH
Confidence 984
No 3
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=99.21 E-value=2.2e-11 Score=101.19 Aligned_cols=64 Identities=31% Similarity=0.345 Sum_probs=52.9
Q ss_pred hHHhhhhhhHHHHHhh-------------cCCcchhHHHHHHHHHHHHHHHHHhhhccCC--hhHHHHHHHhhhHHHHh
Q 029366 81 ERVANVLTSLPFIALG-------------LQTPRKNLNMTLYANSLVGVGVTSSLYHSSR--GKLRKYLRWADYAMIAT 144 (194)
Q Consensus 81 EEiANavTH~~giAlg-------------~~~~~kivs~sIYg~SLIlLy~ASTLYHa~~--gr~K~~LRrlDHaAIA~ 144 (194)
||.+|++||++++.+. ..+.....+..+|+++++++|++||+||..+ ++.|+++||+||++|..
T Consensus 1 ~e~~N~~tH~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~vy~~~~~~~~~~St~yH~~~~s~~~~~~~~rlD~~gI~~ 79 (204)
T TIGR01065 1 EEIANAITHGIGAVLSIIALALLVIYSWDHGGAVAVLGFSIYGISLILLFLVSTLYHSIPKGSKAKNWLRKIDHSMIYV 79 (204)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcCchhHHHHHHHccHHHHHH
Confidence 8999999998663221 1234477899999999999999999999984 68999999999998864
No 4
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=98.78 E-value=1.4e-08 Score=81.98 Aligned_cols=68 Identities=25% Similarity=0.209 Sum_probs=54.5
Q ss_pred chhhHHhhhhhhHHHHHhh------------c-C-CcchhHHHHHHHHHHHHHHHHHhhhccC---Ch-hHHHHHHHhhh
Q 029366 78 HLLERVANVLTSLPFIALG------------L-Q-TPRKNLNMTLYANSLVGVGVTSSLYHSS---RG-KLRKYLRWADY 139 (194)
Q Consensus 78 S~~EEiANavTH~~giAlg------------~-~-~~~kivs~sIYg~SLIlLy~ASTLYHa~---~g-r~K~~LRrlDH 139 (194)
+..||..|.+||+++..+. . . +........+|..+.+..|++||+||.. .. +.+++++++||
T Consensus 2 ~~hNEt~NiwtHll~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~St~yH~f~~~s~~~~~~~~~~lD~ 81 (222)
T PF03006_consen 2 QLHNETVNIWTHLLGAILFLALLIFLLSLASSPSFSPWDYIPFLIYLLSAILCFLCSTLYHLFSCHSEGKVYHIFLRLDY 81 (222)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhHHHhhCCCcCCcHHHHHHHHhcch
Confidence 4679999999997663221 0 1 2346789999999999999999999994 34 89999999999
Q ss_pred HHHHhH
Q 029366 140 AMIATA 145 (194)
Q Consensus 140 aAIA~~ 145 (194)
++|..-
T Consensus 82 ~gI~l~ 87 (222)
T PF03006_consen 82 AGIFLL 87 (222)
T ss_pred hhhhHh
Confidence 999754
No 5
>KOG4243 consensus Macrophage maturation-associated protein [Defense mechanisms]
Probab=97.95 E-value=1.1e-05 Score=72.22 Aligned_cols=73 Identities=26% Similarity=0.336 Sum_probs=54.9
Q ss_pred eecccCCc--chhhHHhhhhhhHHHH---Hhh-------cCCcchhHHHHHHHHHHHHHHHHHhhhccCC--h-------
Q 029366 70 RGCIHGDL--HLLERVANVLTSLPFI---ALG-------LQTPRKNLNMTLYANSLVGVGVTSSLYHSSR--G------- 128 (194)
Q Consensus 70 ~~~~~~dy--S~~EEiANavTH~~gi---Alg-------~~~~~kivs~sIYg~SLIlLy~ASTLYHa~~--g------- 128 (194)
+-|..|.| +..|..||.+||++++ .++ ..+.++-..+.|||..+.+||.+||.||... .
T Consensus 72 ra~~g~aYqPT~~EhvAN~~tHai~I~PaIl~~~~l~~~s~~d~q~i~awIYG~~lc~LFt~STvfH~~~~~~~hqn~~r 151 (298)
T KOG4243|consen 72 RAPAGGAYQPTEYEHVANCYTHAIWIVPAILGSALLHRLSDDDWQKITAWIYGMGLCALFTVSTVFHIVSWKKSHQNKLR 151 (298)
T ss_pred cCCCCCCCCCchHHHHHhhHhhHhhhhHHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777 4569999999997652 111 2378888999999999999999999999962 1
Q ss_pred hHHHHHHHhhhHHH
Q 029366 129 KLRKYLRWADYAMI 142 (194)
Q Consensus 129 r~K~~LRrlDHaAI 142 (194)
..|..|-++|-++|
T Consensus 152 ~l~~~lH~cDRa~I 165 (298)
T KOG4243|consen 152 TLEHCLHMCDRAVI 165 (298)
T ss_pred HHHHHHHHhhhhHh
Confidence 34556777777776
No 6
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=94.39 E-value=0.21 Score=42.75 Aligned_cols=73 Identities=22% Similarity=0.210 Sum_probs=50.6
Q ss_pred hHHhhhhhhHHHHHhhcC------CcchhHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHhhhHHHHhHHHHHHHHhh
Q 029366 81 ERVANVLTSLPFIALGLQ------TPRKNLNMTLYANSLVGVGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALR 154 (194)
Q Consensus 81 EEiANavTH~~giAlg~~------~~~kivs~sIYg~SLIlLy~ASTLYHa~~gr~K~~LRrlDHaAIA~~s~~lsrAl~ 154 (194)
-|..|++|.++++.++.. ..+.-....+..++++++++.|++||+.. +...+.+|-..|-.++.++--.+.
T Consensus 25 AEf~NtlSNl~fi~~al~gl~~~~~~~~~~~~~l~~~~l~~VGiGS~~FHaTl---~~~~ql~DelPMl~~~~~~~~~~~ 101 (262)
T PF05875_consen 25 AEFWNTLSNLAFIVAALYGLYLARRRGLERRFALLYLGLALVGIGSFLFHATL---SYWTQLLDELPMLWATLLFLYIVL 101 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHhHHHHHhCh---hhhHHHhhhhhHHHHHHHHHHHHh
Confidence 567899999988666632 11122244666778999999999999963 345677898888766666555555
Q ss_pred cC
Q 029366 155 DE 156 (194)
Q Consensus 155 ~~ 156 (194)
.+
T Consensus 102 ~~ 103 (262)
T PF05875_consen 102 TR 103 (262)
T ss_pred cc
Confidence 44
No 7
>KOG0748 consensus Predicted membrane proteins, contain hemolysin III domain [General function prediction only; Signal transduction mechanisms]
Probab=90.78 E-value=0.4 Score=42.91 Aligned_cols=25 Identities=40% Similarity=0.523 Sum_probs=22.6
Q ss_pred HhhhccCC---hhHHHHHHHhhhHHHHh
Q 029366 120 SSLYHSSR---GKLRKYLRWADYAMIAT 144 (194)
Q Consensus 120 STLYHa~~---gr~K~~LRrlDHaAIA~ 144 (194)
|.+||... .+.++.+-++||..|+.
T Consensus 98 S~~~H~~~~~s~~~~~~~~~lDY~GIs~ 125 (286)
T KOG0748|consen 98 SSLYHLFSCHSEKVSRFFLKLDYAGISL 125 (286)
T ss_pred HHHHHHHhcccHHHHHHHHHccHHhhHH
Confidence 99999973 68999999999999985
No 8
>KOG2329 consensus Alkaline ceramidase [Lipid transport and metabolism]
Probab=40.55 E-value=61 Score=29.74 Aligned_cols=63 Identities=24% Similarity=0.243 Sum_probs=41.0
Q ss_pred hhhHHhhhhhhHHHHHhhc----CCcchhH--HHHHHHHHHHHHHHHHhhhccCChhHHHHHHHhhhHHHHh
Q 029366 79 LLERVANVLTSLPFIALGL----QTPRKNL--NMTLYANSLVGVGVTSSLYHSSRGKLRKYLRWADYAMIAT 144 (194)
Q Consensus 79 ~~EEiANavTH~~giAlg~----~~~~kiv--s~sIYg~SLIlLy~ASTLYHa~~gr~K~~LRrlDHaAIA~ 144 (194)
-..|.+|.+|-.+++.+.. ...++-+ ...+=++++..++++|.+||+. .+-..+-+|-.+|--
T Consensus 31 yIAEf~NT~sN~~fil~~~~~l~~~y~~~~e~~~~l~~v~~~ivgl~S~~fH~T---L~~~~QllDElamiw 99 (276)
T KOG2329|consen 31 YIAEFANTESNSPFILLAFIGLHCAYRQKLEKRAYLICVLFTIVGLGSMYFHMT---LVYKGQLLDELAMIW 99 (276)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhh---HHHhheehhhhhHHH
Confidence 3478899999988864431 1222222 3445567778889999999996 334456667766655
No 9
>PF12825 DUF3818: Domain of unknown function in PX-proteins (DUF3818); InterPro: IPR024554 The function of this domain is not known, but it is almost always found C-terminal to a PX-domain (IPR001683 from INTERPRO).
Probab=35.00 E-value=75 Score=29.44 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=38.1
Q ss_pred HHHHHHHhhhccC--Ch---hHHHHHHHhhhHHHHhHHHHHHHHhhcCCcHHHHHHHhhhcccccc
Q 029366 114 VGVGVTSSLYHSS--RG---KLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPL 174 (194)
Q Consensus 114 IlLy~ASTLYHa~--~g---r~K~~LRrlDHaAIA~~s~~lsrAl~~~~p~~~~aas~~~~Pf~Pl 174 (194)
+-+.+|||+||.. .+ ..-..+|++ |..|=.+ .+...||=.||...|..++=++=-||+
T Consensus 29 ~~i~lAs~iy~~Fv~~d~s~~~~~~~krl-H~l~PY~--~ikq~Lri~Np~~m~~gm~dLfLaqpf 91 (341)
T PF12825_consen 29 CRIELASTIYQLFVGSDNSPELFAQLKRL-HSLIPYT--VIKQILRITNPATMMKGMMDLFLAQPF 91 (341)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHhCcHH--HHHHHHhcCCHHHHHHHHHHHHccCCC
Confidence 3468999999996 22 233334443 3444332 456788989999999987766667774
No 10
>cd06571 Bac_DnaA_C C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Probab=23.24 E-value=1.5e+02 Score=21.66 Aligned_cols=43 Identities=12% Similarity=0.083 Sum_probs=34.1
Q ss_pred HHHHHHHHhhhccCChhHHHHHHHhhhHHHHhHHHHHHHHhhc
Q 029366 113 LVGVGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRD 155 (194)
Q Consensus 113 LIlLy~ASTLYHa~~gr~K~~LRrlDHaAIA~~s~~lsrAl~~ 155 (194)
-+++|++.-.+..+....=..|..-||++|.-+--=+-+-+.+
T Consensus 33 ~ia~yl~~~~~~~s~~~Ig~~fg~r~hStV~~a~~ri~~~~~~ 75 (90)
T cd06571 33 QIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEE 75 (90)
T ss_pred HHHHHHHHHHhCCCHHHHHHHhCCCCHhHHHHHHHHHHHHHHh
Confidence 3678999999988877777788889999999887766665543
No 11
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=22.07 E-value=1.3e+02 Score=20.26 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 029366 105 NMTLYANSLVGVGVTSSLYH 124 (194)
Q Consensus 105 s~sIYg~SLIlLy~ASTLYH 124 (194)
+..+|++.|+++|++=..|-
T Consensus 15 ~Wi~F~l~mi~vFi~li~yt 34 (38)
T PF09125_consen 15 GWIAFALAMILVFIALIGYT 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999887774
No 12
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.62 E-value=1e+02 Score=27.54 Aligned_cols=60 Identities=18% Similarity=0.078 Sum_probs=47.7
Q ss_pred chhhhhccccccccc---ccCccchhHHHHHHHHHhhCCCCcccceecccCCcchhhHHhhhh
Q 029366 28 ALKEITEHEDYESTC---KSSFIGANQFLLMQRAWQQRPSCLRPIRGCIHGDLHLLERVANVL 87 (194)
Q Consensus 28 ~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~r~w~q~p~cl~pi~~~~~~dyS~~EEiANav 87 (194)
+-++..+.+--+.-+ .+-+++.+||.-|-|.+--||.-|--=.-.|+-|...++++||-+
T Consensus 127 A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLl 189 (228)
T COG4181 127 AKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189 (228)
T ss_pred HHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHH
Confidence 445555565555444 778899999999999999999988766667888899999998864
No 13
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=20.97 E-value=1.7e+02 Score=29.04 Aligned_cols=58 Identities=19% Similarity=0.347 Sum_probs=41.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHhhhH-HHHhHHHHHHHHhhcCCcHH
Q 029366 100 PRKNLNMTLYANSLVGVGVTSSLYHSSRGKLRKYLRWADYA-MIATATVCLSRALRDENPKM 160 (194)
Q Consensus 100 ~~kivs~sIYg~SLIlLy~ASTLYHa~~gr~K~~LRrlDHa-AIA~~s~~lsrAl~~~~p~~ 160 (194)
+.+..-.-..|++|++.++.|+.||-.+.+. -++ +|-+ +--.+.+||-|-...++|-.
T Consensus 310 ~~~~~~~~~~g~~li~egi~sa~yh~CPn~~--~fq-fdt~fmyvi~~L~~lkiyq~RH~di 368 (570)
T PF13965_consen 310 PQHYGLFYAMGLALIMEGILSACYHICPNRS--NFQ-FDTSFMYVIAGLCMLKIYQKRHPDI 368 (570)
T ss_pred CccchhHHHHHHHHHHHHHHHHHhhcCcCch--hhH-HHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 3344566678999999999999999987432 344 6644 44457778888888877654
Done!