Query 029366
Match_columns 194
No_of_seqs 139 out of 249
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 19:17:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029366.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029366hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l0a_A Putative exonuclease; R 27.8 9.6 0.00033 32.7 -0.8 37 53-90 223-259 (266)
2 3ec8_A Putative uncharacterize 18.2 35 0.0012 28.0 0.8 23 50-72 111-135 (166)
3 3pvv_A Chromosomal replication 11.4 2.1E+02 0.0073 20.7 3.4 41 113-154 39-79 (101)
4 4drb_C Fanconi anemia group M 11.2 42 0.0014 27.0 -0.6 12 53-64 74-85 (141)
5 1y29_A Huwentoxin-X; A double- 9.1 1.4E+02 0.0046 18.1 1.3 16 64-79 8-26 (28)
6 3jsz_A LGT1, putative uncharac 8.8 2.7E+02 0.0092 26.3 3.7 59 17-75 118-176 (525)
7 1j1v_A Chromosomal replication 8.4 1.8E+02 0.0062 20.7 2.0 41 113-153 35-75 (94)
8 2ls2_A High affinity copper up 10.2 90 0.0031 18.1 0.0 20 107-126 5-24 (26)
9 1q42_A MTR2, mRNA transport re 7.3 1.8E+02 0.006 24.6 1.7 17 50-66 86-102 (201)
10 1jb0_A Photosystem I P700 chlo 7.3 4.6E+02 0.016 26.1 4.8 68 57-126 101-181 (755)
No 1
>3l0a_A Putative exonuclease; RER070207002219, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; HET: PE4; 2.19A {Eubacterium rectale}
Probab=27.76 E-value=9.6 Score=32.73 Aligned_cols=37 Identities=22% Similarity=0.139 Sum_probs=29.7
Q ss_pred HHHHHHHhhCCCCcccceecccCCcchhhHHhhhhhhH
Q 029366 53 LLMQRAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSL 90 (194)
Q Consensus 53 l~~~r~w~q~p~cl~pi~~~~~~dyS~~EEiANavTH~ 90 (194)
-.|.|+|+...+=.+|++| +.|||.+.....+.++|.
T Consensus 223 ~~i~~i~~~~~g~~~p~~C-g~CdyCr~~k~~~~~~~~ 259 (266)
T 3l0a_A 223 MNMPRILRVKNGEVEPDRC-ELCDCCRHNRVLKKPISI 259 (266)
T ss_dssp HHHHHHHHHHTTSSCCCCC-SCSHHHHHHCCCCSCCCH
T ss_pred HHHHHHHHHhcCCCCCCCC-CCCccccccccccceeeH
Confidence 3468888888777788876 899999998888777764
No 2
>3ec8_A Putative uncharacterized protein FLJ10324; beta barrel, helix, structural genomics, structural genomics consortium, SGC, cell adhesion; 2.60A {Homo sapiens}
Probab=18.18 E-value=35 Score=28.01 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=18.9
Q ss_pred hHHHHHHHHHhhCCCCcccc--eec
Q 029366 50 NQFLLMQRAWQQRPSCLRPI--RGC 72 (194)
Q Consensus 50 ~~~l~~~r~w~q~p~cl~pi--~~~ 72 (194)
..=|+||++|+-+|+|.|-. +++
T Consensus 111 EcPL~iq~lW~p~~g~~RrFEl~~r 135 (166)
T 3ec8_A 111 EKPLLIQELWKPREGLSRRFELRKR 135 (166)
T ss_dssp CCHHHHHHHCCCCTTCCEEEEEEEH
T ss_pred CCceeehcccCCCccchhhhhhhch
Confidence 45578999999999999854 766
No 3
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=11.36 E-value=2.1e+02 Score=20.74 Aligned_cols=41 Identities=12% Similarity=0.065 Sum_probs=32.4
Q ss_pred HHHHHHHHhhhccCChhHHHHHHHhhhHHHHhHHHHHHHHhh
Q 029366 113 LVGVGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALR 154 (194)
Q Consensus 113 LIlLy~ASTLYHa~~gr~K~~LRrlDHaAIA~~s~~lsrAl~ 154 (194)
-|++|++--+...+-++.-..|- =||+++.-|---..+-+.
T Consensus 39 qiAmYL~r~~t~~Sl~~IG~~fg-RDHsTV~ha~~ki~~~~~ 79 (101)
T 3pvv_A 39 QIAMYLCRELTDLSLPKIGQAFG-RDHTTVMYAQRKILSEMA 79 (101)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHTT-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHH
Confidence 47889999998888777767777 799999888776666554
No 4
>4drb_C Fanconi anemia group M protein; DNA repair, DNA binding complex, histone fold, DNA damage RE binding, DNA binding-protein binding complex; 2.63A {Homo sapiens}
Probab=11.22 E-value=42 Score=27.02 Aligned_cols=12 Identities=42% Similarity=0.684 Sum_probs=9.2
Q ss_pred HHHHHHHhhCCC
Q 029366 53 LLMQRAWQQRPS 64 (194)
Q Consensus 53 l~~~r~w~q~p~ 64 (194)
|-=+|+||.+|=
T Consensus 74 LsEWr~WQn~p~ 85 (141)
T 4drb_C 74 LSEWRLWQDHPL 85 (141)
T ss_dssp SSTTGGGCSSCC
T ss_pred hhhhhhhcCCCC
Confidence 344899999984
No 5
>1y29_A Huwentoxin-X; A double-stranded beta-sheet, ICK, knottin; NMR {Synthetic} SCOP: g.3.6.2
Probab=9.09 E-value=1.4e+02 Score=18.08 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=11.3
Q ss_pred CCccc---ceecccCCcch
Q 029366 64 SCLRP---IRGCIHGDLHL 79 (194)
Q Consensus 64 ~cl~p---i~~~~~~dyS~ 79 (194)
+|.|| |-|+|.|.++.
T Consensus 8 pC~~~~~riPCCG~Cs~nk 26 (28)
T 1y29_A 8 PCYGATQKIPCCGVCSHNK 26 (28)
T ss_dssp CCCTTCCSCCBSSCBSSSC
T ss_pred cccCCccccccccccccCc
Confidence 46554 67999998763
No 6
>3jsz_A LGT1, putative uncharacterized protein; glucosyltransferase, legionnaire'S disease, legionella pneum transferase; HET: MSE UPG; 1.70A {Legionella pneumophila} PDB: 2wzg_A* 3jt1_A* 2wzf_A*
Probab=8.75 E-value=2.7e+02 Score=26.25 Aligned_cols=59 Identities=19% Similarity=0.171 Sum_probs=45.7
Q ss_pred cceeecCCCccchhhhhcccccccccccCccchhHHHHHHHHHhhCCCCcccceecccC
Q 029366 17 RGVHVVPHSPFALKEITEHEDYESTCKSSFIGANQFLLMQRAWQQRPSCLRPIRGCIHG 75 (194)
Q Consensus 17 ~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~w~q~p~cl~pi~~~~~~ 75 (194)
-|+.|....+|+++--+++++.-+..+...+...|.-.+.+.=+|.|+|---+--+-+|
T Consensus 118 ~G~~v~~~d~~~F~tn~~~~IWFSn~P~~fMp~e~q~~Lle~re~nPG~~i~LVYsStl 176 (525)
T 3jsz_A 118 GGFKVRDSNEFKFKTNVQTSIWFSIKPELFMPSKQQEALKRRREQYPGCKIRLIYSSSL 176 (525)
T ss_dssp TTEECCSSCCEEEESSEEEEECCCSSTTCSSCHHHHHHHHHHHHHCTTCEEEEEECSTT
T ss_pred cceeeeecCcccccCCceEEEEEeCChhHhccHHHHHHHHHHHhhCCCCeEEEEeehhh
Confidence 37788888899999999999988877888888877777777899999986544444333
No 7
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=8.37 E-value=1.8e+02 Score=20.66 Aligned_cols=41 Identities=10% Similarity=0.058 Sum_probs=30.3
Q ss_pred HHHHHHHHhhhccCChhHHHHHHHhhhHHHHhHHHHHHHHh
Q 029366 113 LVGVGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRAL 153 (194)
Q Consensus 113 LIlLy~ASTLYHa~~gr~K~~LRrlDHaAIA~~s~~lsrAl 153 (194)
-+++|++--++..+-++.-..|---||+++.-+---..+-+
T Consensus 35 qiamyL~r~~t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~ 75 (94)
T 1j1v_A 35 QMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLR 75 (94)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 47789999999888666666673339999988776665543
No 8
>2ls2_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=10.22 E-value=90 Score=18.15 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhhhccC
Q 029366 107 TLYANSLVGVGVTSSLYHSS 126 (194)
Q Consensus 107 sIYg~SLIlLy~ASTLYHa~ 126 (194)
.-|..|++++|+.+.+|-+.
T Consensus 5 ~~~v~Sci~ifll~~~YE~L 24 (26)
T 2ls2_A 5 GEMAGAFVAVFLLAMFYEGL 24 (26)
Confidence 34678899999999998654
No 9
>1q42_A MTR2, mRNA transport regulator MTR2; NTF2-fold, nuclear export, translation; 1.75A {Candida albicans} SCOP: d.17.4.2 PDB: 1q40_A
Probab=7.32 E-value=1.8e+02 Score=24.60 Aligned_cols=17 Identities=29% Similarity=0.474 Sum_probs=15.9
Q ss_pred hHHHHHHHHHhhCCCCc
Q 029366 50 NQFLLMQRAWQQRPSCL 66 (194)
Q Consensus 50 ~~~l~~~r~w~q~p~cl 66 (194)
.+|..|++.|++-|.+-
T Consensus 86 ~gr~~fqk~w~~lP~Sq 102 (201)
T 1q42_A 86 DCKLQFQKKWLQTPLSS 102 (201)
T ss_dssp CHHHHHHHHHHTSCCEE
T ss_pred ccHHHHHHHHHhCCCcc
Confidence 89999999999999985
No 10
>1jb0_A Photosystem I P700 chlorophyll A apoprotein A1; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.29.1.1 PDB: 3pcq_A* 2o01_A* 2wsc_A* 2wse_A* 2wsf_A* 3lw5_A*
Probab=7.28 E-value=4.6e+02 Score=26.07 Aligned_cols=68 Identities=18% Similarity=0.252 Sum_probs=51.5
Q ss_pred HHHhhCCCCcccceecccCCcchhhHHhhh----------hhhHHH---HHhhcCCcchhHHHHHHHHHHHHHHHHHhhh
Q 029366 57 RAWQQRPSCLRPIRGCIHGDLHLLERVANV----------LTSLPF---IALGLQTPRKNLNMTLYANSLVGVGVTSSLY 123 (194)
Q Consensus 57 r~w~q~p~cl~pi~~~~~~dyS~~EEiANa----------vTH~~g---iAlg~~~~~kivs~sIYg~SLIlLy~ASTLY 123 (194)
..|-+.|.-.|||---+= -..++++.|+ +|++++ .+.|.....++-..++++.-+.++++....+
T Consensus 101 e~Wl~dP~~i~P~Aq~VW--P~~GQ~ilna~~gg~~~gi~ItSG~fq~Wra~Gitt~~~Ly~~ai~~li~a~l~L~aGw~ 178 (755)
T 1jb0_A 101 EAWLADPTGIKPSAQVVW--PIVGQGILNGDVGGGFHGIQITSGLFQLWRASGITNEFQLYCTAIGGLVMAGLMLFAGWF 178 (755)
T ss_dssp HHHHHCTTTSCCEECCCC--CCTTGGGGSEEEETTEEEEECCSCHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCccccCccccccc--ccccHHHHhccccCCCCcceecccHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999999976665 4677888887 666665 5777777777778888888777777777777
Q ss_pred ccC
Q 029366 124 HSS 126 (194)
Q Consensus 124 Ha~ 126 (194)
|..
T Consensus 179 H~h 181 (755)
T 1jb0_A 179 HYH 181 (755)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
Done!