Query 029366
Match_columns 194
No_of_seqs 139 out of 249
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 19:17:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029366.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029366hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f9yb1 c.14.1.4 (B:23-285) Ac 19.8 15 0.0011 28.9 0.9 31 58-88 1-44 (263)
2 d1x4la1 g.39.1.3 (A:8-36) Four 14.6 21 0.0016 20.4 0.5 18 64-81 3-20 (29)
3 d1x68a1 g.39.1.3 (A:8-36) Four 11.3 28 0.0021 19.8 0.3 15 64-78 3-17 (29)
4 d1k04a_ a.24.14.1 (A:) FAT dom 9.4 44 0.0032 24.9 0.9 20 171-190 109-128 (142)
5 d2cchb2 a.74.1.1 (B:309-432) C 7.7 1E+02 0.0075 20.9 2.3 20 139-158 44-63 (124)
6 d2dara2 g.39.1.3 (A:8-52) PDZ 5.6 80 0.0058 19.3 0.6 11 64-74 23-33 (45)
7 d1j1va_ a.4.12.2 (A:) Chromoso 5.5 2.4E+02 0.018 18.1 3.2 47 113-160 35-81 (94)
8 d1x3ha1 g.39.1.3 (A:8-42) Leup 5.5 84 0.0061 17.8 0.6 10 64-73 13-22 (35)
9 d1jkwa1 a.74.1.1 (A:11-161) Cy 5.5 2.6E+02 0.019 18.9 3.5 30 138-167 66-100 (151)
10 d1rw1a_ c.47.1.12 (A:) Hypothe 5.1 1.1E+02 0.0081 20.1 1.1 20 121-140 3-23 (114)
No 1
>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}
Probab=19.80 E-value=15 Score=28.88 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=22.8
Q ss_pred HHhhCCCCcccc---------eecccCCc----chhhHHhhhhh
Q 029366 58 AWQQRPSCLRPI---------RGCIHGDL----HLLERVANVLT 88 (194)
Q Consensus 58 ~w~q~p~cl~pi---------~~~~~~dy----S~~EEiANavT 88 (194)
+|+.-|+|-++| ..|-+|+| +..||+..-+=
T Consensus 1 ~W~~C~~C~~~~~~~~l~~~~~vC~~C~~h~~ltaReRi~~L~D 44 (263)
T d2f9yb1 1 VWTKCDSCGQVLYRAELERNLEVCPKCDHHMRMTARNRLHSLLD 44 (263)
T ss_dssp CEECCTTTCCCEETTHHHHTTTBCTTTCCBCCCCHHHHHHHHSC
T ss_pred CcCcCCCCcceeeHHHHHHhCCCCcCCCCCCCcCHHHHHHHHcc
Confidence 699999999865 45667776 77788854443
No 2
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.65 E-value=21 Score=20.36 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=14.0
Q ss_pred CCcccceecccCCcchhh
Q 029366 64 SCLRPIRGCIHGDLHLLE 81 (194)
Q Consensus 64 ~cl~pi~~~~~~dyS~~E 81 (194)
.|-|||-|-|.+-|---|
T Consensus 3 ~C~kPItg~gg~kyisFE 20 (29)
T d1x4la1 3 GCTNPISGLGGTKYISFE 20 (29)
T ss_dssp TTTBCCCCSSSCSCEECS
T ss_pred ccCCcccccCCceEEEee
Confidence 699999999888774333
No 3
>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.30 E-value=28 Score=19.81 Aligned_cols=15 Identities=27% Similarity=0.634 Sum_probs=12.2
Q ss_pred CCcccceecccCCcc
Q 029366 64 SCLRPIRGCIHGDLH 78 (194)
Q Consensus 64 ~cl~pi~~~~~~dyS 78 (194)
.|-|||-|-+-+-|-
T Consensus 3 ~C~kPItg~gG~k~i 17 (29)
T d1x68a1 3 ACSKPISGLTGAKFI 17 (29)
T ss_dssp TTCCCCCTTTTCCEE
T ss_pred cccccccccCCceEE
Confidence 699999998877663
No 4
>d1k04a_ a.24.14.1 (A:) FAT domain of focal adhesion kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.39 E-value=44 Score=24.94 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=16.8
Q ss_pred cccchhhhhhhhhhhhhhcc
Q 029366 171 IQPLMVSAVHTGMMEVNSLF 190 (194)
Q Consensus 171 f~Pl~VSa~h~~~mE~~~~~ 190 (194)
++==|+|++|..+|..++||
T Consensus 109 yrr~MLsaaH~LA~DaKnLl 128 (142)
T d1k04a_ 109 YKKQMLTAAHALAVDAKNLL 128 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHH
Confidence 45558899999999999986
No 5
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.71 E-value=1e+02 Score=20.93 Aligned_cols=20 Identities=20% Similarity=0.076 Sum_probs=16.3
Q ss_pred hHHHHhHHHHHHHHhhcCCc
Q 029366 139 YAMIATATVCLSRALRDENP 158 (194)
Q Consensus 139 HaAIA~~s~~lsrAl~~~~p 158 (194)
-+.||.|+++|+|-..++.|
T Consensus 44 PS~lAaaai~lar~~l~~~~ 63 (124)
T d2cchb2 44 PSVIAGAAFHLALYTVTGQS 63 (124)
T ss_dssp HHHHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHHHHhCCCC
Confidence 46799999999998887654
No 6
>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.64 E-value=80 Score=19.32 Aligned_cols=11 Identities=36% Similarity=0.585 Sum_probs=8.6
Q ss_pred CCcccceeccc
Q 029366 64 SCLRPIRGCIH 74 (194)
Q Consensus 64 ~cl~pi~~~~~ 74 (194)
.|-+||.|+..
T Consensus 23 ~C~~pI~g~~v 33 (45)
T d2dara2 23 HCNQVIRGPFL 33 (45)
T ss_dssp SSCCBCCSCEE
T ss_pred ccCCcccCcee
Confidence 58899988754
No 7
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=5.54 E-value=2.4e+02 Score=18.10 Aligned_cols=47 Identities=11% Similarity=0.099 Sum_probs=32.7
Q ss_pred HHHHHHHHhhhccCChhHHHHHHHhhhHHHHhHHHHHHHHhhcCCcHH
Q 029366 113 LVGVGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKM 160 (194)
Q Consensus 113 LIlLy~ASTLYHa~~gr~K~~LRrlDHaAIA~~s~~lsrAl~~~~p~~ 160 (194)
-+++|++--+++.+....-..|-.=||++|.-+---+.+.+. ++|.+
T Consensus 35 ~va~yL~r~~~~~sl~~Ig~~fg~rdHsTV~~a~kki~~~~~-~d~~~ 81 (94)
T d1j1va_ 35 QMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLRE-ESHDI 81 (94)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHH-HCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHhCCCCchHHHHHHHHHHHHHH-hCHHH
Confidence 456799999988886665555644499999888776666543 34544
No 8
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.51 E-value=84 Score=17.77 Aligned_cols=10 Identities=30% Similarity=0.627 Sum_probs=7.7
Q ss_pred CCcccceecc
Q 029366 64 SCLRPIRGCI 73 (194)
Q Consensus 64 ~cl~pi~~~~ 73 (194)
.|.+||.|..
T Consensus 13 ~C~~~I~g~~ 22 (35)
T d1x3ha1 13 GCNRPVLENY 22 (35)
T ss_dssp TTCCBCCSSC
T ss_pred hcCCcccchh
Confidence 5889998764
No 9
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.45 E-value=2.6e+02 Score=18.85 Aligned_cols=30 Identities=20% Similarity=0.408 Sum_probs=14.2
Q ss_pred hhHHHHhHHHHHHHHhh-----cCCcHHHHHHHhh
Q 029366 138 DYAMIATATVCLSRALR-----DENPKMLMAASAL 167 (194)
Q Consensus 138 DHaAIA~~s~~lsrAl~-----~~~p~~~~aas~~ 167 (194)
.+..+|+|.+.+-|-+- ..+|+.++++.+.
T Consensus 66 ~~~~~~tA~~~~~RF~~~~s~~~~~~~li~~acl~ 100 (151)
T d1jkwa1 66 PRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAF 100 (151)
T ss_dssp CHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcCccccccHHHHHHHHHH
Confidence 34555555555554443 2345555444443
No 10
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.08 E-value=1.1e+02 Score=20.15 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=11.7
Q ss_pred hhhccCC-hhHHHHHHHhhhH
Q 029366 121 SLYHSSR-GKLRKYLRWADYA 140 (194)
Q Consensus 121 TLYHa~~-gr~K~~LRrlDHa 140 (194)
++||-.+ ++-|+.+++|+-.
T Consensus 3 ~iY~~p~Cs~srka~~~L~~~ 23 (114)
T d1rw1a_ 3 VLYGIKACDTMKKARTWLDEH 23 (114)
T ss_dssp EEEECSSCHHHHHHHHHHHHT
T ss_pred EEEECCCChHHHHHHHHHHHc
Confidence 5688775 4555555555543
Done!