BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029367
(194 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O04348|TPP1_ARATH Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis
thaliana GN=TPP1 PE=2 SV=2
Length = 340
Score = 174 bits (440), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 108/157 (68%), Gaps = 5/157 (3%)
Query: 41 ILIGLLLWSTFSEIRFIPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAP---FQ 97
+ + +L S +E + IPS+SMYPTL GDR++ EK SY+FR P + DIV F+AP +
Sbjct: 164 VTVSILFRSALAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLE 223
Query: 98 YP--GLGEEDVFIKRIVAKAGDLVQVRDGSLYVNGIAQNEDFIAEHPKYTSDLTYVPVGY 155
YP G DVFIKRIVA GD V+VRDG L+VN I Q EDF+ E Y + +VP GY
Sbjct: 224 YPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQEEDFVLEPMSYEMEPMFVPKGY 283
Query: 156 VYVLGDNRNNSFDSHVWGPLPVKNIAGRYLTRCYRPS 192
V+VLGDNRN SFDSH WGPLP++NI GR + R + PS
Sbjct: 284 VFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPPS 320
>sp|Q8H0W1|PLSP1_ARATH Chloroplast processing peptidase OS=Arabidopsis thaliana GN=PLSP1
PE=2 SV=2
Length = 291
Score = 170 bits (430), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 107/156 (68%), Gaps = 2/156 (1%)
Query: 39 LKILIGLLLWSTFSEIRFIPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAP--F 96
+ I + L +E R+IPS SMYPT +GDR++ EK SYYFR P +DIV F++P
Sbjct: 120 VAIAVSLAFRYFIAEPRYIPSLSMYPTFDVGDRLVAEKVSYYFRKPCANDIVIFKSPPVL 179
Query: 97 QYPGLGEEDVFIKRIVAKAGDLVQVRDGSLYVNGIAQNEDFIAEHPKYTSDLTYVPVGYV 156
Q G + DVFIKRIVAK GDLV+V +G L VNG+A+NE FI E P Y VP V
Sbjct: 180 QEVGYTDADVFIKRIVAKEGDLVEVHNGKLMVNGVARNEKFILEPPGYEMTPIRVPENSV 239
Query: 157 YVLGDNRNNSFDSHVWGPLPVKNIAGRYLTRCYRPS 192
+V+GDNRNNS+DSHVWGPLP+KNI GR + R + P+
Sbjct: 240 FVMGDNRNNSYDSHVWGPLPLKNIIGRSVFRYWPPN 275
>sp|Q9M9Z2|TPP2_ARATH Probable thylakoidal processing peptidase 2, chloroplastic
OS=Arabidopsis thaliana GN=TPP2 PE=2 SV=1
Length = 367
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/154 (54%), Positives = 102/154 (66%), Gaps = 2/154 (1%)
Query: 41 ILIGLLLWSTFSEIRFIPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAP--FQY 98
+ + LL S +E + IPS+SM PTL +GDR+I EK SY+FR P + DIV F+AP
Sbjct: 194 VTVSLLFRSALAEPKSIPSTSMLPTLDVGDRVIAEKVSYFFRKPEVSDIVIFKAPPILVE 253
Query: 99 PGLGEEDVFIKRIVAKAGDLVQVRDGSLYVNGIAQNEDFIAEHPKYTSDLTYVPVGYVYV 158
G DVFIKRIVA GD V+V DG L VN Q EDF+ E Y + +VP GYV+V
Sbjct: 254 HGYSCADVFIKRIVASEGDWVEVCDGKLLVNDTVQAEDFVLEPIDYEMEPMFVPEGYVFV 313
Query: 159 LGDNRNNSFDSHVWGPLPVKNIAGRYLTRCYRPS 192
LGDNRN SFDSH WGPLP+KNI GR + R + PS
Sbjct: 314 LGDNRNKSFDSHNWGPLPIKNIIGRSVFRYWPPS 347
>sp|P72660|LEP1_SYNY3 Probable signal peptidase I-1 OS=Synechocystis sp. (strain PCC 6803
/ Kazusa) GN=lepB1 PE=3 SV=1
Length = 196
Score = 130 bits (327), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 87/140 (62%), Gaps = 2/140 (1%)
Query: 52 SEIRFIPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAP--FQYPGLGEEDVFIK 109
+E R+IPS SM PTL GDR++VEK SY+F P + DI+ F P Q G FIK
Sbjct: 35 AEPRYIPSDSMLPTLEQGDRLVVEKVSYHFHPPQVGDIIVFHPPELLQVQGYDLGQAFIK 94
Query: 110 RIVAKAGDLVQVRDGSLYVNGIAQNEDFIAEHPKYTSDLTYVPVGYVYVLGDNRNNSFDS 169
R++A G V+V +G +Y +G E++I E P+Y VP G V+V+GDNRNNS DS
Sbjct: 95 RVIALPGQTVEVNNGIVYRDGQPLQEEYILEPPQYNLPAVRVPDGQVFVMGDNRNNSNDS 154
Query: 170 HVWGPLPVKNIAGRYLTRCY 189
HVWG LP +NI G L R +
Sbjct: 155 HVWGFLPQQNIIGHALFRFF 174
>sp|P73157|LEP2_SYNY3 Probable signal peptidase I-2 OS=Synechocystis sp. (strain PCC 6803
/ Kazusa) GN=lepB2 PE=3 SV=1
Length = 218
Score = 123 bits (309), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 93/165 (56%), Gaps = 3/165 (1%)
Query: 23 PCESWAFLRWPGLDGSLKILIGLLLWSTFSEIRFIPSSSMYPTLRIGDRIIVEKASYYFR 82
P +W L G +++ + + + +E R+IPSSSM PTL+I DR+I+EK SY R
Sbjct: 17 PENTWLEL---GKTMVTAVILAIGIRTFVAEARYIPSSSMEPTLQINDRLIIEKISYRLR 73
Query: 83 NPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAGDLVQVRDGSLYVNGIAQNEDFIAEHP 142
+P +IV F D FIKRI+ GD V+V G++YVNG +E++IA P
Sbjct: 74 DPERGEIVVFNPTDALKAKNFHDAFIKRIIGLPGDEVRVSQGNVYVNGKMLDENYIAAPP 133
Query: 143 KYTSDLTYVPVGYVYVLGDNRNNSFDSHVWGPLPVKNIAGRYLTR 187
Y VP VLGDNRNNS+DSH WG +P + + GR R
Sbjct: 134 AYEYGPVKVPDDQYLVLGDNRNNSYDSHYWGFVPREKLLGRAFVR 178
>sp|Q51876|LEP_PHOLA Signal peptidase I OS=Phormidium laminosum GN=lepB PE=3 SV=1
Length = 203
Score = 120 bits (302), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 88/153 (57%), Gaps = 6/153 (3%)
Query: 39 LKILIGLLLWSTFSEIRFIPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRA---- 94
L +++ L + + +E R+IPS SM PTL + DR+IVEK SY+F P DI+ F
Sbjct: 37 LSVVLALGIRTFVAEARYIPSESMLPTLEVNDRLIVEKISYHFNPPRRGDIIVFHPTEAL 96
Query: 95 PFQYPGLGEEDVFIKRIVAKAGDLVQVRDGSLYVNGIAQNEDFIAEHPKYTSDLTYVPVG 154
Q P L E FIKR++ G+ VQV G + +NG E++I P Y VP
Sbjct: 97 KQQNPSLNE--AFIKRVIGLPGETVQVTGGRVLINGQPLEENYIQSPPDYQWGPEKVPAD 154
Query: 155 YVYVLGDNRNNSFDSHVWGPLPVKNIAGRYLTR 187
VLGDNRNNS+DSH WG +P +NI GR + R
Sbjct: 155 SFLVLGDNRNNSYDSHFWGYVPRQNIIGRAVVR 187
>sp|O07560|LEPV_BACSU Signal peptidase I V OS=Bacillus subtilis (strain 168) GN=sipV PE=2
SV=1
Length = 168
Score = 73.9 bits (180), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 72/141 (51%), Gaps = 23/141 (16%)
Query: 57 IPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAG 116
+ SM PT + G+ ++V K S+ F+ DIV F+ P + V IKR++ G
Sbjct: 30 VEGVSMNPTFQEGNELLVNKFSHRFKTIHRFDIVLFKGP-------DHKVLIKRVIGLPG 82
Query: 117 DLVQVRDGSLYVNGIAQNEDFIAEHPKYTS------------DLT---YVPVGYVYVLGD 161
+ ++ +D LYVNG E F+ +H K S D+T VP G +V+GD
Sbjct: 83 ETIKYKDDQLYVNGKQVAEPFL-KHLKSVSAGSHVTGDFSLKDVTGTSKVPKGKYFVVGD 141
Query: 162 NRNNSFDSHVWGPLPVKNIAG 182
NR SFDS +GP+ KNI G
Sbjct: 142 NRIYSFDSRHFGPIREKNIVG 162
>sp|P71013|LEPT_BACSU Signal peptidase I T OS=Bacillus subtilis (strain 168) GN=sipT PE=1
SV=1
Length = 193
Score = 73.6 bits (179), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 17/155 (10%)
Query: 25 ESWAFLRWPGLDGSLKILIGLLLWSTFSEIRFIPSSSMYPTLRIGDRIIVEKASYYFRNP 84
++ +L W G + +L+ LL+ E + SSMYPTL G+R+ V K Y
Sbjct: 16 KTNTYLEW-GKAIVIAVLLALLIRHFLFEPYLVEGSSMYPTLHDGERLFVNKTVNYIGEL 74
Query: 85 SIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAGDLVQVRDGSLYVNGIAQNEDFIAEHPKY 144
DIV G + ++KR++ K G+ VQ++D +LY+NG E +++++ K
Sbjct: 75 KRGDIVIIN------GETSKIHYVKRLIGKPGETVQMKDDTLYINGKKVAEPYLSKNKKE 128
Query: 145 TSDL----------TYVPVGYVYVLGDNRNNSFDS 169
L VP G +V+GDNR NS DS
Sbjct: 129 AEKLGVSLTGDFGPVKVPKGKYFVMGDNRLNSMDS 163
>sp|Q9I5G7|LEP_PSEAE Signal peptidase I OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=lepB PE=3 SV=1
Length = 284
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 84/194 (43%), Gaps = 56/194 (28%)
Query: 41 ILIGLLLWSTFSEIRFIPSSSMYPTLRIGDRIIVEKASYYFR------------NPSIHD 88
+ I L+L S E IPS SM PTL +GD I+V K +Y R +P D
Sbjct: 70 LFIVLVLRSFLVEPFQIPSGSMKPTLEVGDFILVNKFAYGIRLPVLDTKVIPIGDPQRGD 129
Query: 89 IVTFRAPFQYPGLGEEDVFIKRIVAKAGDLVQ-VRDGSLYVNGIAQNEDFIAEHPKYTSD 147
++ FR P + P + +IKR+V GD V+ ++ LYVNG E + E P
Sbjct: 130 VMVFRYPSE-PNIN----YIKRVVGLPGDTVRYTKEKRLYVNGELVAEKLVGEEPGTLGS 184
Query: 148 LTY----------------------------VPVGYVYVLGDNRNNSFDSHVW------- 172
+T +P G+ +++GDNR+NS DS W
Sbjct: 185 VTLYQEKLGQAEHLIRKEMSRYRIEPDRQWTIPAGHYFMMGDNRDNSNDSRYWNDPKIPK 244
Query: 173 ---GPLPVKNIAGR 183
G +P +NI G+
Sbjct: 245 DLLGMVPDRNIVGK 258
>sp|Q10789|LEP_MYCTU Signal peptidase I OS=Mycobacterium tuberculosis GN=lepB PE=1 SV=1
Length = 294
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 83/191 (43%), Gaps = 55/191 (28%)
Query: 56 FIPSSSMYPTLR-----IGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLG-------- 102
IPS SM PTL +GDRI+V+K SY F +P D++ FR P + +G
Sbjct: 91 LIPSESMEPTLHGCSTCVGDRIMVDKLSYRFGSPQPGDVIVFRGPPSW-NVGYKSIRSHN 149
Query: 103 ------------------EEDVFIKRIVAKAGDLVQVR-DGSLYVNGIAQNEDFI----- 138
+E+ +KR++A G VQ R D L VNG E ++
Sbjct: 150 VAVRWVQNALSFIGFVPPDENDLVKRVIAVGGQTVQCRSDTGLTVNGRPLKEPYLDPATM 209
Query: 139 ----AEHPKYTSDL--TYVPVGYVYVLGDNRNNSFDSHVWGPL-----------PVKNIA 181
+ +P S+ VP G V+V+GDNR +S DS PL PV N+
Sbjct: 210 MADPSIYPCLGSEFGPVTVPPGRVWVMGDNRTHSADSRAHCPLLCTDDPLPGTVPVANVI 269
Query: 182 GRYLTRCYRPS 192
G+ + PS
Sbjct: 270 GKARLIVWPPS 280
>sp|P41025|LEP2_BACAM Signal peptidase I OS=Bacillus amyloliquefaciens GN=sipS2 PE=3 SV=1
Length = 193
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 16/141 (11%)
Query: 39 LKILIGLLLWSTFSEIRFIPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQY 98
+ + + LL+ E + SSMYPTL G+R+ V K+ Y DIV
Sbjct: 29 IAVALALLIRHFLFEPYLVEGSSMYPTLHDGERLFVNKSVNYIGEIERGDIVIIN----- 83
Query: 99 PGLGEEDVFIKRIVAKAGDLVQVRDGSLYVNGIAQNEDFIAEHPKYTSDL---------- 148
G + ++KR++ K G+ V++++ +LY+NG E ++A + K L
Sbjct: 84 -GDTSKVHYVKRLIGKPGETVEMKNDTLYINGKKIAEPYLASNKKEAKKLGVNLTGDFGP 142
Query: 149 TYVPVGYVYVLGDNRNNSFDS 169
VP G +V+GDNR NS DS
Sbjct: 143 VKVPKGKYFVMGDNRLNSMDS 163
>sp|P26844|LEP_PSEFL Signal peptidase I OS=Pseudomonas fluorescens GN=lepB PE=3 SV=1
Length = 284
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 83/194 (42%), Gaps = 56/194 (28%)
Query: 41 ILIGLLLWSTFSEIRFIPSSSMYPTLRIGDRIIVEKASYYFRNPSIH------------D 88
+ I L+L S E IPS SM PTL +GD I+V K SY R P I D
Sbjct: 70 LFIVLVLRSFLVEPFQIPSGSMKPTLDVGDFILVNKFSYGIRLPVIDKKVIEVGDPQRGD 129
Query: 89 IVTFRAPFQYPGLGEEDVFIKRIVAKAGDLVQ-VRDGSLYVNGIAQNEDFIAEHPK---- 143
++ FR P P + +IKR+V GD+V+ D L++NG + E + P
Sbjct: 130 VMVFRYPSD-PNVN----YIKRVVGLPGDVVRYTSDKRLFINGESVAEKLLGAEPNTLGS 184
Query: 144 ---YTSDLT---------------------YVPVGYVYVLGDNRNNSFDSHVW------- 172
Y L VP G+ +++GDNR+NS DS W
Sbjct: 185 AELYQEKLGAVEHEIRKEMSRYRAMPDGQWKVPAGHYFMMGDNRDNSNDSRYWDDPNIPK 244
Query: 173 ---GPLPVKNIAGR 183
G +P +NI G+
Sbjct: 245 DLLGMVPDENIVGK 258
>sp|P42668|LEP_BACLI Signal peptidase I OS=Bacillus licheniformis GN=lepB PE=3 SV=1
Length = 186
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 19/156 (12%)
Query: 39 LKILIGLLLWSTFSEIRFIPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQY 98
+ +++ LL+ + E + +SM PTL G+R+ V K Y DIV
Sbjct: 22 IAVVLALLIRAFLFEPYLVEGTSMDPTLHDGERLFVYKTVRYVGEFKRGDIVIIDGD--- 78
Query: 99 PGLGEEDV-FIKRIVAKAGDLVQVRDGSLYVNGIAQNEDFIAEHP--------KYTSDL- 148
E++V ++KR++ GD VQ++D +LY+NG +E +++E+ K T D
Sbjct: 79 ----EKNVHYVKRLIGLPGDTVQMKDDTLYINGKKVSEPYLSENRKEAEAVGVKLTGDFG 134
Query: 149 -TYVPVGYVYVLGDNRNNSFDS-HVWGPLPVKNIAG 182
VP G +V+GDNR S DS + G + K +AG
Sbjct: 135 PVKVPEGKYFVMGDNRQRSMDSRNGLGLIDKKRVAG 170
>sp|P41027|LEP_BACCL Signal peptidase I OS=Bacillus caldolyticus GN=lepB PE=3 SV=1
Length = 182
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 21/141 (14%)
Query: 57 IPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAG 116
+ SM PTL G+ +IV K SY DI+ F A +++ ++KR++ G
Sbjct: 34 VEGKSMMPTLESGNLLIVNKLSYDIGPIRRFDIIVFHA-------NKKEDYVKRVIGLPG 86
Query: 117 DLVQVRDGSLYVNGIAQNEDFIAEHP------KYTSDLTY--------VPVGYVYVLGDN 162
D + ++ LYVNG +E ++ + + T D T VP G ++VLGDN
Sbjct: 87 DRIAYKNDILYVNGKKVDEPYLRPYKQKLLDGRLTGDFTLEEVTGKTRVPPGCIFVLGDN 146
Query: 163 RNNSFDSHVWGPLPVKNIAGR 183
R +S+DS +G + + I G+
Sbjct: 147 RLSSWDSRHFGFVKINQIVGK 167
>sp|P41026|LEP1_BACAM Signal peptidase I OS=Bacillus amyloliquefaciens GN=sipA PE=3 SV=1
Length = 185
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 72/163 (44%), Gaps = 23/163 (14%)
Query: 35 LDGSLKILIGLLLWSTFSEIRFIP----SSSMYPTLRIGDRIIVEKASYYFRNPSIHDIV 90
LD + I+I ++L F P SM PTL +RI V Y + IV
Sbjct: 15 LDWAKAIIIAVVLAVLIRNFLFAPYVVDGESMEPTLHDRERIFVNMTVKYISDFKRGQIV 74
Query: 91 TFRAPFQYPGLGEEDVFIKRIVAKAGDLVQVRDGSLYVNGIAQNEDFIAEHPKYTSDLTY 150
GE + ++KRI+ GD VQ+++ LY+NG +E ++A + K Y
Sbjct: 75 VLN--------GENEHYVKRIIGLPGDTVQMKNDQLYINGKKVSEPYLAANKKKAKQDGY 126
Query: 151 ----------VPVGYVYVLGDNRNNSFDS-HVWGPLPVKNIAG 182
VP +V+GDNR NS DS + G K IAG
Sbjct: 127 TLTDDFGPVKVPDDKYFVMGDNRRNSMDSRNGLGLFTKKQIAG 169
>sp|O33021|LEP_MYCLE Probable signal peptidase I OS=Mycobacterium leprae (strain TN)
GN=lepB PE=3 SV=1
Length = 289
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 90/215 (41%), Gaps = 64/215 (29%)
Query: 41 ILIGL--LLWSTFSEIRFIPSSSMYPTLR-----IGDRIIVEKASYYFRNPSIHDIVTFR 93
I IGL ++ + + IPS SM PTL +GDRI+V+K +Y F +P D++ F+
Sbjct: 62 IAIGLYYVMLTFVARPYLIPSESMEPTLHGCSGCVGDRIMVDKITYRFSSPQPGDVIVFK 121
Query: 94 APFQYPGL-------------------------GEEDVFIKRIVAKAGDLVQVR-DGSLY 127
P + + +E+ +KR++A G VQ R D L
Sbjct: 122 GPPSWNTMYKSIRSNNIVLRSVQNALSFVGFVPPDENDLVKRVIAVGGQTVQCRSDTGLT 181
Query: 128 VNGIAQNEDFIAEHPKYTSDLTY------------VPVGYVYVLGDNRNNSFDSHVW--- 172
VNG E ++ +DL++ VP G ++V+GDNR +S DS
Sbjct: 182 VNGKPLKEPYLRPV-TMNADLSFSPCLGSEFGPVTVPQGRLWVMGDNRIHSADSRYHCNS 240
Query: 173 ---------------GPLPVKNIAGRYLTRCYRPS 192
G +PV N+ G+ + PS
Sbjct: 241 TDVVNGLSCTGDPNSGTVPVSNVIGKARVVVWPPS 275
>sp|Q57350|LEPQ_BACNA Signal peptidase I P OS=Bacillus subtilis subsp. natto GN=sipP PE=3
SV=1
Length = 185
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 76/159 (47%), Gaps = 25/159 (15%)
Query: 41 ILIGLLLWSTFSEIRFIP----SSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPF 96
ILI L+L F P SM PTL +R+ V K Y + DIV
Sbjct: 19 ILIALILVFLVRTFLFEPYIVQGESMKPTLFNSERLFVNKFVKYTGDFKRGDIVVLN--- 75
Query: 97 QYPGLGEEDV--FIKRIVAKAGDLVQVRDGSLYVNGIAQNEDFIAEHPK--YTSDLTY-- 150
GEE ++KR++ GD +++++ +L+VNG NE+++ E+ K + SDL
Sbjct: 76 -----GEEKKTHYVKRLIGLPGDTIEMKNDNLFVNGKRFNEEYLKENKKDAHDSDLNLTG 130
Query: 151 ------VPVGYVYVLGDNRNNSFDS-HVWGPLPVKNIAG 182
VP +V+GDNR NS DS + G K+I G
Sbjct: 131 DFGPIKVPKDKYFVMGDNRQNSMDSRNGLGLFNKKDIVG 169
>sp|Q5HHB9|LEP_STAAC Signal peptidase IB OS=Staphylococcus aureus (strain COL) GN=spsB
PE=3 SV=2
Length = 191
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 25/145 (17%)
Query: 57 IPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAG 116
I SM PTL+ G+R+ V Y ++V F A + D ++KR++ G
Sbjct: 32 IKGESMDPTLKDGERVAVNIVGYKTGGLEKGNVVVFHA-------NKNDDYVKRVIGVPG 84
Query: 117 DLVQVRDGSLYVNGIAQNEDF------------------IAEHPKYTSDLTYVPVGYVYV 158
D V+ ++ +LYVNG Q+E + + + P +P G V
Sbjct: 85 DKVEYKNDTLYVNGKKQDEPYLNYNLKHKQGDYITGTFQVKDLPNANPKSNVIPKGKYLV 144
Query: 159 LGDNRNNSFDSHVWGPLPVKNIAGR 183
LGDNR S DS +G + I G+
Sbjct: 145 LGDNREVSKDSRAFGLIDEDQIVGK 169
>sp|P28628|LEPS_BACSU Signal peptidase I S OS=Bacillus subtilis (strain 168) GN=sipS PE=1
SV=1
Length = 184
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 39 LKILIGLLLWSTFSEIRFIPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQY 98
+ +++ LL+ + + SMYPTL +R+ V Y DIV
Sbjct: 21 IAVVLALLIRNFIFAPYVVDGDSMYPTLHNRERVFVNMTVKYIGEFDRGDIVVLN----- 75
Query: 99 PGLGEEDVFIKRIVAKAGDLVQVRDGSLYVNGIAQNEDFIAEHPK---------YTSDL- 148
G++ ++KRI+ GD V++++ LY+NG +E ++A + K T D
Sbjct: 76 ---GDDVHYVKRIIGLPGDTVEMKNDQLYINGKKVDEPYLAANKKRAKQDGFDHLTDDFG 132
Query: 149 -TYVPVGYVYVLGDNRNNSFDS-HVWGPLPVKNIAG 182
VP +V+GDNR NS DS + G K IAG
Sbjct: 133 PVKVPDNKYFVMGDNRRNSMDSRNGLGLFTKKQIAG 168
>sp|Q6GIC4|LEPH_STAAR Inactive signal peptidase IA OS=Staphylococcus aureus (strain
MRSA252) GN=spsA PE=3 SV=1
Length = 174
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 68/143 (47%), Gaps = 20/143 (13%)
Query: 57 IPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAG 116
IP++ M PTL GDR+IV K F + DI+T+R G E ++ RI+AK G
Sbjct: 31 IPNNDMSPTLNKGDRVIVNKIKVTFNQLNNGDIITYRR-------GNE-IYTSRIIAKPG 82
Query: 117 DLVQVRDGSLYVN------GIAQN---EDF-IAEHPKYTSDLTYVPVGYVYVLGDNRNNS 166
+ R G LY + A+N +DF + K D+ +P VL D+ NN
Sbjct: 83 QSMAFRQGQLYRDDRPVDASYAKNRKIKDFSLRNFKKLDGDI--IPPNNFVVLNDHDNNQ 140
Query: 167 FDSHVWGPLPVKNIAGRYLTRCY 189
DS +G + K+I G R Y
Sbjct: 141 HDSRQFGLIDKKDIIGNISLRYY 163
>sp|Q6GIC3|LEP_STAAR Signal peptidase IB OS=Staphylococcus aureus (strain MRSA252)
GN=spsB PE=3 SV=1
Length = 191
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 25/145 (17%)
Query: 57 IPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAG 116
I SM PTL+ G+R+ V Y ++V F A + D ++KR++ G
Sbjct: 32 IKGESMDPTLKDGERVAVNIIGYKTGGLEKGNVVVFHA-------NKNDDYVKRVIGVPG 84
Query: 117 DLVQVRDGSLYVNGIAQNEDF------------------IAEHPKYTSDLTYVPVGYVYV 158
D V+ ++ +LYVNG Q+E + + + P +P G V
Sbjct: 85 DKVEYKNDTLYVNGKKQDEPYLNYNLKHKQGDYITGTFQVKDLPNANPKSNVIPKGKYLV 144
Query: 159 LGDNRNNSFDSHVWGPLPVKNIAGR 183
LGDNR S DS +G + I G+
Sbjct: 145 LGDNREVSKDSRAFGLIDEDQIVGK 169
>sp|P0A069|LEP_STAAW Signal peptidase IB OS=Staphylococcus aureus (strain MW2) GN=spsB
PE=3 SV=1
Length = 191
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 25/145 (17%)
Query: 57 IPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAG 116
I SM PTL+ G+R+ V Y ++V F A + D ++KR++ G
Sbjct: 32 IKGESMDPTLKDGERVAVNIIGYKTGGLEKGNVVVFHA-------NKNDDYVKRVIGVPG 84
Query: 117 DLVQVRDGSLYVNGIAQNEDF------------------IAEHPKYTSDLTYVPVGYVYV 158
D V+ ++ +LYVNG Q+E + + + P +P G V
Sbjct: 85 DKVEYKNDTLYVNGKKQDEPYLNYNLKHKQGDYITGTFQVKDLPNANPKSNVIPKGKYLV 144
Query: 159 LGDNRNNSFDSHVWGPLPVKNIAGR 183
LGDNR S DS +G + I G+
Sbjct: 145 LGDNREVSKDSRAFGLIDEDQIVGK 169
>sp|P0A070|LEP_STAAU Signal peptidase IB OS=Staphylococcus aureus GN=spsB PE=3 SV=1
Length = 191
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 25/145 (17%)
Query: 57 IPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAG 116
I SM PTL+ G+R+ V Y ++V F A + D ++KR++ G
Sbjct: 32 IKGESMDPTLKDGERVAVNIIGYKTGGLEKGNVVVFHA-------NKNDDYVKRVIGVPG 84
Query: 117 DLVQVRDGSLYVNGIAQNEDF------------------IAEHPKYTSDLTYVPVGYVYV 158
D V+ ++ +LYVNG Q+E + + + P +P G V
Sbjct: 85 DKVEYKNDTLYVNGKKQDEPYLNYNLKHKQGDYITGTFQVKDLPNANPKSNVIPKGKYLV 144
Query: 159 LGDNRNNSFDSHVWGPLPVKNIAGR 183
LGDNR S DS +G + I G+
Sbjct: 145 LGDNREVSKDSRAFGLIDEDQIVGK 169
>sp|Q6GAW1|LEP_STAAS Signal peptidase IB OS=Staphylococcus aureus (strain MSSA476)
GN=spsB PE=3 SV=1
Length = 191
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 25/145 (17%)
Query: 57 IPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAG 116
I SM PTL+ G+R+ V Y ++V F A + D ++KR++ G
Sbjct: 32 IKGESMDPTLKDGERVAVNIIGYKTGGLEKGNVVVFHA-------NKNDDYVKRVIGVPG 84
Query: 117 DLVQVRDGSLYVNGIAQNEDF------------------IAEHPKYTSDLTYVPVGYVYV 158
D V+ ++ +LYVNG Q+E + + + P +P G V
Sbjct: 85 DKVEYKNDTLYVNGKKQDEPYLNYNLKHKQGDYITGTFQVKDLPNANPKSNVIPKGKYLV 144
Query: 159 LGDNRNNSFDSHVWGPLPVKNIAGR 183
LGDNR S DS +G + I G+
Sbjct: 145 LGDNREVSKDSRAFGLIDEDQIVGK 169
>sp|P0A068|LEP_STAAN Signal peptidase IB OS=Staphylococcus aureus (strain N315) GN=spsB
PE=1 SV=1
Length = 191
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 25/145 (17%)
Query: 57 IPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAG 116
I SM PTL+ G+R+ V Y ++V F A + D ++KR++ G
Sbjct: 32 IKGESMDPTLKDGERVAVNIIGYKTGGLEKGNVVVFHA-------NKNDDYVKRVIGVPG 84
Query: 117 DLVQVRDGSLYVNGIAQNEDF------------------IAEHPKYTSDLTYVPVGYVYV 158
D V+ ++ +LYVNG Q+E + + + P +P G V
Sbjct: 85 DKVEYKNDTLYVNGKKQDEPYLNYNLKHKQGDYITGTFQVKDLPNANPKSNVIPKGKYLV 144
Query: 159 LGDNRNNSFDSHVWGPLPVKNIAGR 183
LGDNR S DS +G + I G+
Sbjct: 145 LGDNREVSKDSRAFGLIDEDQIVGK 169
>sp|P0A067|LEP_STAAM Signal peptidase IB OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=spsB PE=3 SV=1
Length = 191
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 25/145 (17%)
Query: 57 IPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAG 116
I SM PTL+ G+R+ V Y ++V F A + D ++KR++ G
Sbjct: 32 IKGESMDPTLKDGERVAVNIIGYKTGGLEKGNVVVFHA-------NKNDDYVKRVIGVPG 84
Query: 117 DLVQVRDGSLYVNGIAQNEDF------------------IAEHPKYTSDLTYVPVGYVYV 158
D V+ ++ +LYVNG Q+E + + + P +P G V
Sbjct: 85 DKVEYKNDTLYVNGKKQDEPYLNYNLKHKQGDYITGTFQVKDLPNANPKSNVIPKGKYLV 144
Query: 159 LGDNRNNSFDSHVWGPLPVKNIAGR 183
LGDNR S DS +G + I G+
Sbjct: 145 LGDNREVSKDSRAFGLIDEDQIVGK 169
>sp|P0A065|LEPH_STAAW Inactive signal peptidase IA OS=Staphylococcus aureus (strain MW2)
GN=spsA PE=3 SV=1
Length = 174
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 67/142 (47%), Gaps = 18/142 (12%)
Query: 57 IPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAG 116
IP++ M PTL GDR+IV K F + DI+T+R G E ++ RI+AK G
Sbjct: 31 IPNNDMSPTLNKGDRVIVNKIKVTFNQLNNGDIITYRR-------GNE-IYTSRIIAKPG 82
Query: 117 DLVQVRDGSLYVN------GIAQN---EDFIAEHPKYTSDLTYVPVGYVYVLGDNRNNSF 167
+ R G LY + A+N +DF + K D +P VL D+ NN
Sbjct: 83 QSMAFRQGQLYRDDRPVDASYAKNRKIKDFSLRNFKEL-DGDIIPPNNFVVLNDHDNNQH 141
Query: 168 DSHVWGPLPVKNIAGRYLTRCY 189
DS +G + K+I G R Y
Sbjct: 142 DSRQFGLIDKKDIIGNISLRYY 163
>sp|P0A066|LEPH_STAAU Inactive signal peptidase IA OS=Staphylococcus aureus GN=spsA PE=3
SV=1
Length = 174
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 67/142 (47%), Gaps = 18/142 (12%)
Query: 57 IPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAG 116
IP++ M PTL GDR+IV K F + DI+T+R G E ++ RI+AK G
Sbjct: 31 IPNNDMSPTLNKGDRVIVNKIKVTFNQLNNGDIITYRR-------GNE-IYTSRIIAKPG 82
Query: 117 DLVQVRDGSLYVN------GIAQN---EDFIAEHPKYTSDLTYVPVGYVYVLGDNRNNSF 167
+ R G LY + A+N +DF + K D +P VL D+ NN
Sbjct: 83 QSMAFRQGQLYRDDRPVDASYAKNRKIKDFSLRNFKEL-DGDIIPPNNFVVLNDHDNNQH 141
Query: 168 DSHVWGPLPVKNIAGRYLTRCY 189
DS +G + K+I G R Y
Sbjct: 142 DSRQFGLIDKKDIIGNISLRYY 163
>sp|Q6GAW2|LEPH_STAAS Inactive signal peptidase IA OS=Staphylococcus aureus (strain
MSSA476) GN=spsA PE=3 SV=1
Length = 174
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 67/142 (47%), Gaps = 18/142 (12%)
Query: 57 IPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAG 116
IP++ M PTL GDR+IV K F + DI+T+R G E ++ RI+AK G
Sbjct: 31 IPNNDMSPTLNKGDRVIVNKIKVTFNQLNNGDIITYRR-------GNE-IYTSRIIAKPG 82
Query: 117 DLVQVRDGSLYVN------GIAQN---EDFIAEHPKYTSDLTYVPVGYVYVLGDNRNNSF 167
+ R G LY + A+N +DF + K D +P VL D+ NN
Sbjct: 83 QSMAFRQGQLYRDDRPVDASYAKNRKIKDFSLRNFKEL-DGDIIPPNNFVVLNDHDNNQH 141
Query: 168 DSHVWGPLPVKNIAGRYLTRCY 189
DS +G + K+I G R Y
Sbjct: 142 DSRQFGLIDKKDIIGNISLRYY 163
>sp|P0A064|LEPH_STAAN Inactive signal peptidase IA OS=Staphylococcus aureus (strain N315)
GN=spsA PE=3 SV=1
Length = 174
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 67/142 (47%), Gaps = 18/142 (12%)
Query: 57 IPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAG 116
IP++ M PTL GDR+IV K F + DI+T+R G E ++ RI+AK G
Sbjct: 31 IPNNDMSPTLNKGDRVIVNKIKVTFNQLNNGDIITYRR-------GNE-IYTSRIIAKPG 82
Query: 117 DLVQVRDGSLYVN------GIAQN---EDFIAEHPKYTSDLTYVPVGYVYVLGDNRNNSF 167
+ R G LY + A+N +DF + K D +P VL D+ NN
Sbjct: 83 QSMAFRQGQLYRDDRPVDASYAKNRKIKDFSLRNFKEL-DGDIIPPNNFVVLNDHDNNQH 141
Query: 168 DSHVWGPLPVKNIAGRYLTRCY 189
DS +G + K+I G R Y
Sbjct: 142 DSRQFGLIDKKDIIGNISLRYY 163
>sp|P0A063|LEPH_STAAM Inactive signal peptidase IA OS=Staphylococcus aureus (strain Mu50
/ ATCC 700699) GN=spsA PE=3 SV=1
Length = 174
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 67/142 (47%), Gaps = 18/142 (12%)
Query: 57 IPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAG 116
IP++ M PTL GDR+IV K F + DI+T+R G E ++ RI+AK G
Sbjct: 31 IPNNDMSPTLNKGDRVIVNKIKVTFNQLNNGDIITYRR-------GNE-IYTSRIIAKPG 82
Query: 117 DLVQVRDGSLYVN------GIAQN---EDFIAEHPKYTSDLTYVPVGYVYVLGDNRNNSF 167
+ R G LY + A+N +DF + K D +P VL D+ NN
Sbjct: 83 QSMAFRQGQLYRDDRPVDASYAKNRKIKDFSLRNFKEL-DGDIIPPNNFVVLNDHDNNQH 141
Query: 168 DSHVWGPLPVKNIAGRYLTRCY 189
DS +G + K+I G R Y
Sbjct: 142 DSRQFGLIDKKDIIGNISLRYY 163
>sp|Q5HHC0|LEPH_STAAC Inactive signal peptidase IA OS=Staphylococcus aureus (strain COL)
GN=spsA PE=3 SV=1
Length = 174
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 66/142 (46%), Gaps = 18/142 (12%)
Query: 57 IPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAG 116
IP++ M PTL GDR+IV K F + DI+T+R G E ++ RI+AK G
Sbjct: 31 IPNNDMSPTLNKGDRVIVNKIKVTFNQLNNGDIITYRR-------GNE-IYTSRIIAKPG 82
Query: 117 DLVQVRDGSLYVN------GIAQN---EDFIAEHPKYTSDLTYVPVGYVYVLGDNRNNSF 167
+ R G LY + A+N +DF + K D +P VL D NN
Sbjct: 83 QSMAFRQGQLYRDDRPVDASYAKNRKIKDFSLRNFKEL-DGDIIPPNNFVVLNDQDNNKH 141
Query: 168 DSHVWGPLPVKNIAGRYLTRCY 189
DS +G + K+I G R Y
Sbjct: 142 DSRQFGLIDKKDIIGNVSLRYY 163
>sp|P44454|LEP_HAEIN Signal peptidase I OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=lepB PE=3 SV=1
Length = 349
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 81/211 (38%), Gaps = 85/211 (40%)
Query: 57 IPSSSMYPTLRIGDRIIVEKASYYFRNPSIH------------DIVTFRAPFQY---PGL 101
IPS SM TLR+GD ++V K +Y ++P D++ F+AP Q GL
Sbjct: 111 IPSGSMESTLRVGDFLVVNKYAYGVKDPIFQNTIIAGEKPQRGDVIVFKAPQQALIRTGL 170
Query: 102 GEEDV------------------FIKRIVAKAGDLV--QVRDGSLYV------------- 128
G +IKRIV K GD V V +L V
Sbjct: 171 GATRAAFAENLALSSKDNMSGVDYIKRIVGKGGDRVIFDVEQKTLKVVYGKEGKPCEIDC 230
Query: 129 ------------------------NGIAQNEDFIAEHPKYTSDLTY------------VP 152
G + I+E+ +Y SDL + VP
Sbjct: 231 ETKAFEYTQNPTNPAFPNELELTEKGDVTHNVLISEYRRY-SDLEFFPQEGMQTAEWLVP 289
Query: 153 VGYVYVLGDNRNNSFDSHVWGPLPVKNIAGR 183
G +V+GD+R++S DS WG +P KNI G+
Sbjct: 290 EGQYFVMGDHRDHSDDSRFWGFVPEKNIVGK 320
>sp|O67088|LEP_AQUAE Signal peptidase I OS=Aquifex aeolicus (strain VF5) GN=lepB PE=3
SV=1
Length = 256
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 79/201 (39%), Gaps = 56/201 (27%)
Query: 39 LKILIGLLLWSTFSEIRFIPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQ- 97
L IL L + ++ IPS+SM PTL +GD I+V K Y P D++ F+ P
Sbjct: 10 LIILAVLFIREYIAQAYTIPSASMEPTLLVGDFILVNKLVYSLSEPMRGDMIVFKYPKNP 69
Query: 98 ------------------YPGLGEEDVFIKRIVAKAGDLVQVR---------DGSLYVNG 130
+P E++ + VA G L ++ D Y
Sbjct: 70 DIDFIKRIIARGGDTVEFFPYYDEKNNVLIYKVAVNGKLYELTYEGEKNYSYDCYQYREK 129
Query: 131 IAQNEDFIAEHP------------------------KYTSD----LTYVPVGYVYVLGDN 162
+ + + + +H KY D VP GY +V+GDN
Sbjct: 130 LYREDGEVIQHSVCFRNTLLKVPGMVYNAISSDLCLKYNEDGFCVKFVVPEGYYFVMGDN 189
Query: 163 RNNSFDSHVWGPLPVKNIAGR 183
R+NS DS WG +P +NI G+
Sbjct: 190 RDNSQDSRFWGFVPRENIEGK 210
>sp|P42959|LEPU_BACSU Signal peptidase I U OS=Bacillus subtilis (strain 168) GN=sipU PE=1
SV=1
Length = 187
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 30/157 (19%)
Query: 41 ILIGLLLWS---TFSEIRFIPSSSMYPTLRIGDRIIVEKA----SYYFRNP--SIHDIVT 91
I+I L+++ F + I SSM PTL+ +RI+V+KA + R IHD +
Sbjct: 23 IMIAALIFTIRLVFYKPFLIEGSSMAPTLKDSERILVDKAVKWTGGFHRGDIIVIHDKKS 82
Query: 92 FRAPFQYPGLGEEDVFIKRIVAKAGDLVQVRDGSLYVNGIAQNEDFIAEHPK-------- 143
R+ F+KR++ GD +++++ LY+N E ++ E+ +
Sbjct: 83 GRS------------FVKRLIGLPGDSIKMKNDQLYINDKKVEEPYLKEYKQEVKESGVT 130
Query: 144 YTSDL-TYVPVGYVYVLGDNRNNSFDSHVWGPLPVKN 179
T D VP G +V+GDNR NS DS +P ++
Sbjct: 131 LTGDFEVEVPSGKYFVMGDNRLNSLDSRNGMGMPSED 167
>sp|Q96LU5|IMP1L_HUMAN Mitochondrial inner membrane protease subunit 1 OS=Homo sapiens
GN=IMMP1L PE=2 SV=1
Length = 166
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 61 SMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAGDLVQ 120
SM PT++ D + E S +F DIV ++P + KR++ GD +
Sbjct: 40 SMEPTIQNSDIVFAENLSRHFYGIQRGDIVIAKSPSD-----PKSNICKRVIGLEGDKIL 94
Query: 121 VRDGSLYVNGIAQNEDFIAEHPKYTSDLTYVPVGYVYVLGDNRNNSFDSHVWGPLPVKNI 180
S DF H +YVP+G+V++ GDN NS DS +GP+P I
Sbjct: 95 TTSPS----------DFFKSH-------SYVPMGHVWLEGDNLQNSTDSRCYGPIPYGLI 137
Query: 181 AGRYLTRCYRPSD 193
GR + + SD
Sbjct: 138 RGRIFFKIWPLSD 150
>sp|Q28I39|IMP1L_XENTR Mitochondrial inner membrane protease subunit 1 OS=Xenopus
tropicalis GN=immp1l PE=2 SV=1
Length = 167
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 22/137 (16%)
Query: 51 FSEIRFIPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKR 110
E+ SM PT+R D ++ + S +F + DI+ ++P + P + KR
Sbjct: 30 IGEVVICSGPSMEPTIRNYDVLLCDNLSRHFFSIHKGDIIVAKSPDK-PSVN----ICKR 84
Query: 111 IVAKAGDLVQVRDGSLYVNGIAQNEDFIAEHPKYTSDLTYVPVGYVYVLGDNRNNSFDSH 170
++ GD V + S + H TYVP G+V++ GDN +NS DS
Sbjct: 85 VIGLEGDKVCMSSPSA----------LLKRH-------TYVPKGHVWLEGDNLDNSTDSR 127
Query: 171 VWGPLPVKNIAGRYLTR 187
+GP+P I GR R
Sbjct: 128 SYGPVPYALIRGRICLR 144
>sp|P37943|LEPP_BACNA Signal peptidase I P OS=Bacillus subtilis subsp. natto GN=sipP PE=1
SV=1
Length = 186
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 16/142 (11%)
Query: 39 LKILIGLLLWSTFSEIRFIPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQY 98
+ +++ LL+ + E + SM PTL +R+ V K Y N DI+
Sbjct: 22 IAVILALLIRNFLFEPYVVEGKSMDPTLVDSERLFVNKTVKYTGNFKRGDIIILN----- 76
Query: 99 PGLGEEDVFIKRIVAKAGDLVQVRDGSLYVNGIAQNEDFIA---EHPK-----YTSDL-- 148
G + ++KR++ GD V++++ L++NG E +++ E+ K T D
Sbjct: 77 -GKEKSTHYVKRLIGLPGDTVEMKNDHLFINGNEVKEPYLSYNKENAKKVGINLTGDFGP 135
Query: 149 TYVPVGYVYVLGDNRNNSFDSH 170
VP +V+GDNR S DS
Sbjct: 136 IKVPKDKYFVMGDNRQESMDSR 157
>sp|Q1RHA1|LEP_RICBR Signal peptidase I OS=Rickettsia bellii (strain RML369-C) GN=lepB
PE=3 SV=1
Length = 291
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 79/202 (39%), Gaps = 62/202 (30%)
Query: 39 LKILIGLLLWSTFSEIRFIPSSSMYPTLRIGDRIIVEKASY------------------- 79
L ++I L++ E +P+ SM T+ DRI K SY
Sbjct: 48 LVVVIALMIRILIIESFVVPTGSMKATILENDRIFGTKYSYGYSNYSLSFFDFIHLFKGR 107
Query: 80 -YFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAGDLVQVRDGSLYVN--------- 129
+ R P DI+ FR P + +IKR++ GD VQ+ D +Y+N
Sbjct: 108 IFARTPERGDIIIFRPPHEM-----NTRYIKRLIGLPGDKVQLIDDVIYINDEKIERVES 162
Query: 130 GIAQNED--------------------------FIAEHPKY-TSDLTYVPVGYVYVLGDN 162
GI +E+ I + KY +D YVP G + LGDN
Sbjct: 163 GIYVSEEGRKYLKFKETLPNGKTYFSYKLAPVLGIMFNDKYGNTDAFYVPEGEYFFLGDN 222
Query: 163 RNNSFDSHV-WGPLPVKNIAGR 183
R+ S DS + G +P +N +
Sbjct: 223 RDQSNDSRIDLGFVPFENFIAK 244
>sp|A8GYE1|LEP_RICB8 Signal peptidase I OS=Rickettsia bellii (strain OSU 85-389) GN=lepB
PE=3 SV=1
Length = 289
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 79/202 (39%), Gaps = 62/202 (30%)
Query: 39 LKILIGLLLWSTFSEIRFIPSSSMYPTLRIGDRIIVEKASY------------------- 79
L ++I L++ E +P+ SM T+ DRI K SY
Sbjct: 46 LVVVIALMIRILIIESFVVPTGSMKATILENDRIFGTKYSYGYSNYSLSFFDFIHLFKGR 105
Query: 80 -YFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAGDLVQVRDGSLYVN--------- 129
+ R P DI+ FR P + +IKR++ GD VQ+ D +Y+N
Sbjct: 106 IFARTPERGDIIIFRPPHEM-----NTRYIKRLIGLPGDKVQLIDDVIYINDEKIERVES 160
Query: 130 GIAQNED--------------------------FIAEHPKY-TSDLTYVPVGYVYVLGDN 162
GI +E+ I + KY +D YVP G + LGDN
Sbjct: 161 GIYVSEEGRKYLKFKETLPNGKTYFSYKLAPVLGIMFNDKYGNTDAFYVPEGEYFFLGDN 220
Query: 163 RNNSFDSHV-WGPLPVKNIAGR 183
R+ S DS + G +P +N +
Sbjct: 221 RDQSNDSRIDLGFVPFENFIAK 242
>sp|Q9CQU8|IMP1L_MOUSE Mitochondrial inner membrane protease subunit 1 OS=Mus musculus
GN=Immp1l PE=2 SV=1
Length = 166
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 24/134 (17%)
Query: 61 SMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAGDLVQ 120
SM PT++ D + E S +F DIV ++P + KR++ GD +
Sbjct: 40 SMEPTIQNSDIVFAENLSRHFYGIQRGDIVIAKSPSD-----PKSNICKRVIGLEGDKI- 93
Query: 121 VRDGSLYVNGIAQNEDFIAEHPKYT-SDLTYVPVGYVYVLGDNRNNSFDSHVWGPLPVKN 179
++ P +YVP G+V++ GDN NS DS +GP+P
Sbjct: 94 -----------------LSTSPSDVFKSRSYVPTGHVWLEGDNLQNSTDSRYYGPIPYGL 136
Query: 180 IAGRYLTRCYRPSD 193
I GR + + SD
Sbjct: 137 IRGRIFFKIWPFSD 150
>sp|O74800|IMP1_SCHPO Mitochondrial inner membrane protease subunit 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=imp1 PE=3 SV=1
Length = 157
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 26/139 (18%)
Query: 53 EIRFIPSSSMYPTLRIGDR-IIVEKASYYF-RNPSIHDIVTFRAPFQYPGLGEEDVFIKR 110
+++ SM PTL G ++++K F R+ S+ D+V P + KR
Sbjct: 27 QVQMTSGPSMMPTLNSGGEFVLLDKLHGRFARSCSVGDVVVSAKPSD-----SKQHVCKR 81
Query: 111 IVAKAGDLVQVRDGSLYVNGIAQNEDFIAEHPKYTSDLTYVPVGYVYVLGDNRNNSFDSH 170
I+ GD ++YV+ + N+ +P+G+V++ GDN +S DS
Sbjct: 82 IIGMPGD-------TIYVDPTSSNKKIT------------IPLGHVWLAGDNIAHSLDSR 122
Query: 171 VWGPLPVKNIAGRYLTRCY 189
+GP+P+ I + + R +
Sbjct: 123 NYGPVPMGLIKAKVIARVW 141
>sp|A8GM78|LEP_RICAH Signal peptidase I OS=Rickettsia akari (strain Hartford) GN=lepB
PE=3 SV=1
Length = 266
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 81/203 (39%), Gaps = 68/203 (33%)
Query: 39 LKILIGLLLWSTFSEIRFIPSSSMYPTLRIGDRIIVEKASY------------------- 79
+ +LI +L+ F+ +P+ SM T+ D I K SY
Sbjct: 27 IALLIRILIMEPFT----VPTGSMKATILENDYIFSTKYSYGYSNYSLSFFDFIPLFKGR 82
Query: 80 -YFRNPSIHDIVTFRAPFQYPGLGEEDV-FIKRIVAKAGDLVQVRDGSLYVN-------- 129
+ R P DIV FR P + +V +IKR++ GD +Q+ D +Y+N
Sbjct: 83 IFAREPERGDIVVFRPP------NDMNVRYIKRLIGLPGDKIQLIDDVIYINDKKIERTE 136
Query: 130 -GIAQNEDFIA--------------------------EHPKY-TSDLTYVPVGYVYVLGD 161
G +ED I + +Y +D+ YVP G + LGD
Sbjct: 137 VGTYTSEDGIKYLKFKETLPNGRTYFSYKLAPIFSVIYNDRYGNTDVFYVPEGKYFFLGD 196
Query: 162 NRNNSFDSHV-WGPLPVKNIAGR 183
NR+ S DS V G +P +N +
Sbjct: 197 NRDQSNDSRVNLGFVPFENFIAK 219
>sp|Q4UKA7|LEP_RICFE Signal peptidase I OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=lepB PE=3 SV=1
Length = 266
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 82/203 (40%), Gaps = 68/203 (33%)
Query: 39 LKILIGLLLWSTFSEIRFIPSSSMYPTLRIGDRIIVEKASY------------------- 79
+ +LI +L+ F+ +P+ SM T+ D I K SY
Sbjct: 27 IALLIRILIMEPFT----VPTGSMKATILENDYIFSTKYSYGYSNYSLSFFDFIPLFKGR 82
Query: 80 -YFRNPSIHDIVTFRAPFQYPGLGEEDV-FIKRIVAKAGDLVQVRDGSLYVNG--IAQNE 135
+ R P DIV FR P + +V +IKR++ GD +Q+ D +Y+N I + E
Sbjct: 83 IFAREPERGDIVVFRPP------NDMNVRYIKRLIGLPGDKIQLIDDVIYINDKKIERTE 136
Query: 136 --DFIAEHP-KY-------------------------------TSDLTYVPVGYVYVLGD 161
+I+E KY +D+ YVP G + LGD
Sbjct: 137 VGTYISEEGIKYLKFKETLPNGRTYFSYKLAPIFGVIYNDRYGNTDVFYVPEGKYFFLGD 196
Query: 162 NRNNSFDSHV-WGPLPVKNIAGR 183
NR+ S DS V G +P +N +
Sbjct: 197 NRDQSNDSRVNLGFVPFENFIAK 219
>sp|A8F0M1|LEP_RICM5 Signal peptidase I OS=Rickettsia massiliae (strain Mtu5) GN=lepB
PE=3 SV=2
Length = 266
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 79/202 (39%), Gaps = 66/202 (32%)
Query: 39 LKILIGLLLWSTFSEIRFIPSSSMYPTLRIGDRIIVEKASY------------------- 79
+ +LI +L+ F+ +P+ SM T+ D I K SY
Sbjct: 27 IALLIRILIMEPFT----VPTGSMKATILENDYIFSTKYSYGYSNYSLSFFDFIPLFKGR 82
Query: 80 -YFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAGDLVQVRDGSLYVNG--IAQNE- 135
+ R P DIV FR P +IKR++ GD +Q+ D +Y+N I + E
Sbjct: 83 IFAREPERGDIVVFRPPHDMSVR-----YIKRLIGLPGDKIQLIDDVIYINDKKIERTEV 137
Query: 136 -DFIAEH-----------------------PKY---------TSDLTYVPVGYVYVLGDN 162
+I+E P Y +D+ YVP G + LGDN
Sbjct: 138 GTYISEEGIKYLKFKETLPNGRTYFSYKLAPIYGVIYNDRYGNTDVFYVPEGKYFFLGDN 197
Query: 163 RNNSFDSHV-WGPLPVKNIAGR 183
R+ S DS V G +P +N +
Sbjct: 198 RDQSNDSRVNLGFVPFENFIAK 219
>sp|Q92JB1|LEP_RICCN Signal peptidase I OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=lepB PE=3 SV=1
Length = 266
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 81/203 (39%), Gaps = 68/203 (33%)
Query: 39 LKILIGLLLWSTFSEIRFIPSSSMYPTLRIGDRIIVEKASY------------------- 79
+ +LI +L+ F+ +P+ SM T+ D I K SY
Sbjct: 27 IALLIRILIMEPFN----VPTGSMKATILENDYIFSTKYSYGYSNYSLSFFDFIPLFKGR 82
Query: 80 -YFRNPSIHDIVTFRAPFQYPGLGEEDV-FIKRIVAKAGDLVQVRDGSLYVNG--IAQNE 135
+ R P DIV FR P + V +IKR++ GD +Q+ D +Y+N I + E
Sbjct: 83 IFAREPDRGDIVVFRPP------NDMSVRYIKRLIGLPGDKIQLIDDVIYINDKKIERTE 136
Query: 136 --DFIAEH-----------------------PKY---------TSDLTYVPVGYVYVLGD 161
+I+E P Y +D+ YVP G + LGD
Sbjct: 137 VGTYISEEGIKYLKFKETLPNGRTYFSYKLAPIYGVIYNDRYSNTDVFYVPEGQYFFLGD 196
Query: 162 NRNNSFDSHV-WGPLPVKNIAGR 183
NR+ S DS V G +P +N +
Sbjct: 197 NRDQSNDSRVNLGFVPFENFIAK 219
>sp|A8GQT7|LEP_RICRS Signal peptidase I OS=Rickettsia rickettsii (strain Sheila Smith)
GN=lepB PE=1 SV=1
Length = 266
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 81/203 (39%), Gaps = 68/203 (33%)
Query: 39 LKILIGLLLWSTFSEIRFIPSSSMYPTLRIGDRIIVEKASY------------------- 79
+ +LI +L+ F+ +P+ SM T+ D I K SY
Sbjct: 27 IALLIRILIMEPFT----VPTGSMKATILENDYIFSTKYSYGYSNYSLSFFDFIPLFKGR 82
Query: 80 -YFRNPSIHDIVTFRAPFQYPGLGEEDV-FIKRIVAKAGDLVQVRDGSLYVNG--IAQNE 135
+ R P DIV FR P + V +IKR++ GD +Q+ D +Y+N I + E
Sbjct: 83 IFAREPDRGDIVVFRPP------NDMSVRYIKRLIGLPGDKIQLIDDVIYINDKKIERTE 136
Query: 136 --DFIAEH-----------------------PKY---------TSDLTYVPVGYVYVLGD 161
+I+E P Y +D+ YVP G + LGD
Sbjct: 137 VGTYISEEGIKYLKFKETLPNGRTYFSYKLAPIYGVIYNDRYGNTDVFYVPEGKYFFLGD 196
Query: 162 NRNNSFDSHV-WGPLPVKNIAGR 183
NR+ S DS V G +P +N +
Sbjct: 197 NRDQSNDSRVNLGFVPFENFIAK 219
>sp|P57347|LEP_BUCAI Signal peptidase I OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=lepB PE=3 SV=1
Length = 314
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 57 IPSSSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFR--------APFQYPGLGEEDVFI 108
IPS SM PTL +GD I+VEK SY + P H I+ A FQ+P +I
Sbjct: 84 IPSGSMMPTLLVGDFILVEKFSYGIKEPITHKILIRTKKPNRGDIAVFQHPT-DHNINYI 142
Query: 109 KRIVAKAGDLVQ 120
KRI+ GD ++
Sbjct: 143 KRIIGLPGDKIR 154
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 121 VRDGSLYVNGIAQNEDFIAEHPKYTSDLTYVPVGYVYVLGDNRNNSFDSHVWGPLPVKNI 180
V+ L +N I ++ + VP G +++GDNR+NS DS WG +P KN+
Sbjct: 224 VKHSILLLNSIKNTKENYFQQKNMPKLTWIVPKGEYFMMGDNRDNSLDSRYWGFVPEKNL 283
Query: 181 AGR 183
G+
Sbjct: 284 VGK 286
>sp|A8EXI2|LEP_RICCK Signal peptidase I OS=Rickettsia canadensis (strain McKiel) GN=lepB
PE=3 SV=1
Length = 265
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 80/203 (39%), Gaps = 68/203 (33%)
Query: 39 LKILIGLLLWSTFSEIRFIPSSSMYPTLRIGDRIIVEKASYYFRN--------------- 83
+ +LI +L+ F+ +P+ SM T+ D I K SY + N
Sbjct: 26 IALLIRILIMEPFT----VPTGSMKATILENDYIFSTKYSYGYSNYSLSFFDFIPLFKGR 81
Query: 84 -----PSIHDIVTFRAPFQYPGLGEEDV-FIKRIVAKAGDLVQVRDGSLYVNG--IAQNE 135
P DIV FR P + V +IKR++ GD +Q+ D +Y+N I + E
Sbjct: 82 IFACEPERGDIVVFRPP------NDMSVRYIKRLIGLPGDKIQLIDDIIYINDKKIERTE 135
Query: 136 --DFIAEHPKY--------------------------------TSDLTYVPVGYVYVLGD 161
+I+E + +D+ YVP G + LGD
Sbjct: 136 VGTYISEEGRKYLKFKETLPNGRTYFSYKLAPIFGVISDDRYGNTDVFYVPEGKYFFLGD 195
Query: 162 NRNNSFDSHV-WGPLPVKNIAGR 183
NR+ S DS V G +P +N +
Sbjct: 196 NRDQSNDSRVNLGFVPFENFIAK 218
>sp|Q8L2J7|LEP_RICTY Signal peptidase I OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=lepB PE=1 SV=1
Length = 264
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 80/203 (39%), Gaps = 68/203 (33%)
Query: 39 LKILIGLLLWSTFSEIRFIPSSSMYPTLRIGDRIIVEKASY------------------- 79
+ ++I +L+ F+ +P+ SM T+ D I K SY
Sbjct: 25 IALVIRILIMEPFT----VPTGSMKATILENDYIFSTKYSYGYSNYSLSFFDFIPLFKGR 80
Query: 80 -YFRNPSIHDIVTFRAPFQYPGLGEEDV-FIKRIVAKAGDLVQVRDGSLYVN-------- 129
+ R P DIV FR P + V +IKR++ GD +Q+ D +Y+N
Sbjct: 81 VFAREPERGDIVVFRPP------NDMSVRYIKRLIGLPGDKIQLIDDVIYINDKKIERTE 134
Query: 130 -GIAQNEDFIA--------------------------EHPKYT-SDLTYVPVGYVYVLGD 161
G ED I + +Y+ + + YVP G + LGD
Sbjct: 135 VGTYIGEDGIKYLKFKETLPNGRTYFSYKLAPIFGIISNDRYSNTGVFYVPEGQYFFLGD 194
Query: 162 NRNNSFDSHV-WGPLPVKNIAGR 183
NR+ S DS V G +P +N G+
Sbjct: 195 NRDRSNDSRVNLGFVPFENFIGK 217
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.142 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,106,384
Number of Sequences: 539616
Number of extensions: 3277165
Number of successful extensions: 8867
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 8705
Number of HSP's gapped (non-prelim): 97
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)