Query 029367
Match_columns 194
No_of_seqs 201 out of 1477
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 19:19:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029367.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029367hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b12_A Signal peptidase I; ser 100.0 1.8E-39 6.2E-44 268.1 12.2 141 47-192 1-229 (248)
2 1kca_A Repressor protein CI; g 99.2 2.2E-10 7.6E-15 82.6 10.8 87 53-192 14-106 (109)
3 1umu_A UMUD'; induced mutagene 99.0 1.3E-09 4.5E-14 79.1 9.1 50 52-113 27-77 (116)
4 2hnf_A Repressor protein CI101 98.9 1.3E-08 4.6E-13 75.5 9.9 50 53-113 45-100 (133)
5 1jhf_A LEXA repressor; LEXA SO 98.9 2E-08 6.9E-13 79.2 11.2 55 53-120 111-166 (202)
6 3bdn_A Lambda repressor; repre 98.6 7.4E-08 2.5E-12 77.3 7.9 87 53-192 141-233 (236)
7 3k2z_A LEXA repressor; winged 98.6 4.9E-07 1.7E-11 71.1 11.5 50 52-113 109-159 (196)
8 2fjr_A Repressor protein CI; g 95.9 0.052 1.8E-06 41.3 9.1 48 60-120 113-160 (189)
9 1w4s_A Polybromo, polybromo 1 84.6 3.2 0.00011 31.4 7.0 104 62-188 5-108 (174)
10 3v2d_O 50S ribosomal protein L 72.8 22 0.00074 25.4 7.8 26 152-178 80-105 (122)
11 3r8s_K 50S ribosomal protein L 65.4 26 0.0009 25.0 6.9 27 152-178 80-106 (122)
12 3bbo_M Ribosomal protein L14; 59.2 34 0.0012 24.3 6.6 26 152-178 80-105 (121)
13 1whi_A Ribosomal protein L14; 55.9 40 0.0014 24.0 6.5 27 151-178 79-105 (122)
14 2dgy_A MGC11102 protein; EIF-1 49.7 12 0.00041 26.3 2.8 28 67-95 35-65 (111)
15 1jt8_A EIF-1A, probable transl 47.2 7.8 0.00027 26.9 1.5 12 83-94 58-69 (102)
16 2xvs_A Tetratricopeptide repea 44.5 97 0.0033 23.2 8.2 56 67-133 102-165 (166)
17 3u5e_V L17A, YL32, 60S ribosom 44.3 79 0.0027 22.9 6.6 28 150-178 94-121 (137)
18 1vq8_K 50S ribosomal protein L 39.8 68 0.0023 23.1 5.6 28 150-178 89-116 (132)
19 2jv8_A Uncharacterized protein 35.6 47 0.0016 20.5 3.6 21 114-134 8-29 (73)
20 3i4o_A Translation initiation 34.9 18 0.00061 23.8 1.7 12 83-94 53-64 (79)
21 4dt4_A FKBP-type 16 kDa peptid 31.6 92 0.0031 23.2 5.5 34 83-123 112-145 (169)
22 3j21_J 50S ribosomal protein L 31.6 80 0.0027 23.0 4.9 28 150-178 98-125 (141)
23 4egx_A Kinesin-like protein KI 31.3 54 0.0018 24.8 4.2 34 123-160 139-172 (184)
24 3fm8_A Kinesin-like protein KI 29.4 1.2E+02 0.004 21.3 5.4 22 115-136 78-102 (124)
25 1d7q_A Translation initiation 28.9 37 0.0013 24.9 2.7 12 83-94 69-80 (143)
26 3hd7_A Vesicle-associated memb 26.5 32 0.0011 23.0 1.9 23 27-49 65-87 (91)
27 3uep_A YSCQ-C, type III secret 25.6 55 0.0019 22.0 3.0 12 83-94 39-50 (96)
28 1p3h_A 10 kDa chaperonin; beta 24.2 1.7E+02 0.0058 19.8 5.7 12 67-78 7-18 (99)
29 2kr7_A FKBP-type peptidyl-prol 24.1 2E+02 0.0068 20.6 7.3 34 83-123 93-126 (151)
30 4h4g_A (3R)-hydroxymyristoyl-[ 23.8 43 0.0015 24.6 2.3 45 74-135 102-146 (160)
31 3cgm_A SLYD, peptidyl-prolyl C 23.3 1.5E+02 0.0051 21.6 5.3 34 83-123 84-117 (158)
32 4b8u_A 3-hydroxydecanoyl-[acyl 22.9 1.4E+02 0.0048 22.3 5.1 41 82-135 115-156 (171)
33 4abn_A Tetratricopeptide repea 20.9 2.2E+02 0.0077 23.8 6.7 44 83-137 411-461 (474)
34 1o9y_A HRCQ2; secretory protei 20.2 1.1E+02 0.0038 19.7 3.6 12 83-94 35-46 (84)
No 1
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=100.00 E-value=1.8e-39 Score=268.05 Aligned_cols=141 Identities=36% Similarity=0.467 Sum_probs=119.3
Q ss_pred HHHhcceEEEecCCCcccccCCCCEEEEEeeeec------------cCCCCcceEEEEecCCCCCCCCCCceEEEEEEEe
Q 029367 47 LWSTFSEIRFIPSSSMYPTLRIGDRIIVEKASYY------------FRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAK 114 (194)
Q Consensus 47 i~~~~~~~~~V~~~SM~Ptl~~Gd~vlv~k~~~~------------~~~~~rGDiVvf~~p~~~~~~~~~~~~vKRVvgl 114 (194)
++.|+++.+.|+|+||+|||+.||+|+|+|..|. ..++++||||+|+.|. .++..+||||+|+
T Consensus 1 ir~fv~~~~~v~g~SM~Ptl~~GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~-----~~~~~~iKRVigl 75 (248)
T 1b12_A 1 VRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPE-----DPKLDYIKRAVGL 75 (248)
T ss_dssp -CBCCEEEEECCSCTTTTTSCTTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTT-----CTTSEEEEEEEEC
T ss_pred CeEEEEEEEEeccccccccccCCCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCC-----CCCceEEEEEEee
Confidence 3567899999999999999999999999998764 3689999999999986 3568899999999
Q ss_pred CCCeEEEeCC--EEEECC-----------EEcccchhcc-----------------------------------------
Q 029367 115 AGDLVQVRDG--SLYVNG-----------IAQNEDFIAE----------------------------------------- 140 (194)
Q Consensus 115 pGD~V~i~~~--~v~vnG-----------~~~~~~~~~~----------------------------------------- 140 (194)
|||+|+++++ .+|||| +.+.+++...
T Consensus 76 pGD~v~i~~~~~~l~ING~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~e~l 155 (248)
T 1b12_A 76 PGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETL 155 (248)
T ss_dssp TTCEEEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEEEEEE
T ss_pred CCCEEEEEcCceEEEECCccccccccccceeeeeeccccccccccccccccccccccccccccccccccchhhhhHHhhh
Confidence 9999999999 999999 6554321100
Q ss_pred ---------CCC-------C------CCceeeecCCeEEEecCCCCCCCCCCccccccCCCeeEEEEEEEeCCC
Q 029367 141 ---------HPK-------Y------TSDLTYVPVGYVYVLGDNRNNSFDSHVWGPLPVKNIAGRYLTRCYRPS 192 (194)
Q Consensus 141 ---------~~~-------~------~~~~~~vp~g~yfvlGDn~~~S~DSR~~G~V~~~~I~Gkv~~~~~p~~ 192 (194)
.+. + ...+++||+|+|||||||+++|.||||||+||+++|+|||.++|||.+
T Consensus 156 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~VP~g~yFvmGDNR~nS~DSR~~G~Vp~~~IvGka~~i~~s~~ 229 (248)
T 1b12_A 156 GDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFD 229 (248)
T ss_dssp TTEEEEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHHCCEEGGGEEEEEEEEEEEBC
T ss_pred cCccceeEecCCccccccchhcccccccccEEeCCCcEEEecCCCcccCCCCcccccCHHHeEEEEEEEEEeCC
Confidence 011 0 223679999999999999999999999999999999999999999875
No 2
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=99.18 E-value=2.2e-10 Score=82.57 Aligned_cols=87 Identities=15% Similarity=0.180 Sum_probs=65.7
Q ss_pred eEEEecCCCcc------cccCCCCEEEEEeeeeccCCCCcceEEEEecCCCCCCCCCCceEEEEEEEeCCCeEEEeCCEE
Q 029367 53 EIRFIPSSSMY------PTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAGDLVQVRDGSL 126 (194)
Q Consensus 53 ~~~~V~~~SM~------Ptl~~Gd~vlv~k~~~~~~~~~rGDiVvf~~p~~~~~~~~~~~~vKRVvglpGD~V~i~~~~v 126 (194)
....|.|+||+ |+|.+||++++++. .+++.||+|++..+ .+..++||+...
T Consensus 14 f~~~V~GdSM~~~~g~~p~i~~Gd~v~Vd~~----~~~~~Gdivv~~~~-------~~~~~vKrl~~~------------ 70 (109)
T 1kca_A 14 FWLEVEGNSMTAPTGSKPSFPDGMLILVDPE----QAVEPGDFCIARLG-------GDEFTFKKLIRD------------ 70 (109)
T ss_dssp EEEECCSSTTCCCTTCSSCCCTTCEEEEETT----SCCCTTCEEEEECS-------TTCEEEEEEEEE------------
T ss_pred EEEEEeCcCcCCCCCCCCeeCCCCEEEEecC----CcCCCCCEEEEEEC-------CCeEEEEEEEEe------------
Confidence 46789999999 99999999999985 46899999999873 247899999853
Q ss_pred EECCEEcccchhccCCCCCCceeeecCCeEEEecCCCCCCCCCCccccccCCCeeEEEEEEEeCCC
Q 029367 127 YVNGIAQNEDFIAEHPKYTSDLTYVPVGYVYVLGDNRNNSFDSHVWGPLPVKNIAGRYLTRCYRPS 192 (194)
Q Consensus 127 ~vnG~~~~~~~~~~~~~~~~~~~~vp~g~yfvlGDn~~~S~DSR~~G~V~~~~I~Gkv~~~~~p~~ 192 (194)
.|.+++.++|+.. .....- ..-+|+|+|+..+||..
T Consensus 71 --------------------------~~~~~L~s~N~~y--~~~~~~--~~~~IiG~Vv~~~~~~~ 106 (109)
T 1kca_A 71 --------------------------SGQVFLQPLNPQY--PMIPCN--ESCSVVGKVIASQWPEE 106 (109)
T ss_dssp --------------------------TTEEEEECSSTTS--CCEECC--TTCEEEEEEEEEECCGG
T ss_pred --------------------------CCEEEEEECCCCC--CCEEcC--CCcEEEEEEEEEEeCHH
Confidence 2456677787621 111111 35689999999999864
No 3
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=99.03 E-value=1.3e-09 Score=79.09 Aligned_cols=50 Identities=24% Similarity=0.266 Sum_probs=43.3
Q ss_pred ceEEEecCCCccc-ccCCCCEEEEEeeeeccCCCCcceEEEEecCCCCCCCCCCceEEEEEEE
Q 029367 52 SEIRFIPSSSMYP-TLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVA 113 (194)
Q Consensus 52 ~~~~~V~~~SM~P-tl~~Gd~vlv~k~~~~~~~~~rGDiVvf~~p~~~~~~~~~~~~vKRVvg 113 (194)
.....|.|+||+| ++++||.+++++. .+++.||+|++.. ++..++||+..
T Consensus 27 ~~~~~v~GdSM~p~~i~~Gd~v~vd~~----~~~~~gdivv~~~--------~~~~~vKr~~~ 77 (116)
T 1umu_A 27 TYFVKASGDSMIDGGISDGDLLIVDSA----ITASHGDIVIAAV--------DGEFTVKKLQL 77 (116)
T ss_dssp EEEEECCSSTTGGGTCCTTCEEEEETT----SCCCTTCEEEEEE--------TTEEEEEEEEC
T ss_pred EEEEEECCCCcCCCCCCCCCEEEEEcC----CCCCCCCEEEEEE--------CCEEEEEEEEe
Confidence 3567899999999 8999999999975 4689999999987 34789999986
No 4
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=98.87 E-value=1.3e-08 Score=75.51 Aligned_cols=50 Identities=14% Similarity=0.140 Sum_probs=43.1
Q ss_pred eEEEecCCCcc------cccCCCCEEEEEeeeeccCCCCcceEEEEecCCCCCCCCCCceEEEEEEE
Q 029367 53 EIRFIPSSSMY------PTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVA 113 (194)
Q Consensus 53 ~~~~V~~~SM~------Ptl~~Gd~vlv~k~~~~~~~~~rGDiVvf~~p~~~~~~~~~~~~vKRVvg 113 (194)
...+|.|+||+ |++.+||.+++++. .+++.||+|++..+ .+...+||+..
T Consensus 45 f~~~V~GdSM~~~~g~~p~i~~Gd~v~vd~~----~~~~~Gdivv~~~~-------~~~~~vKrl~~ 100 (133)
T 2hnf_A 45 FWLEVEGNSMTTPTGSKTSFPDGMLILVDPE----QAVEPGDFCIARLG-------GDEFTFAKLIR 100 (133)
T ss_dssp EEEECCSSTTCCC---CCCCCTTCEEEEETT----SCCCTTSEEEEEET-------TTEEEEEEEEE
T ss_pred EEEEEeCCCcCCCcCCCCccCCCCEEEEccC----CCCCCCCEEEEEEC-------CCEEEEEEEEE
Confidence 46789999999 99999999999985 57899999999873 34789999984
No 5
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=98.87 E-value=2e-08 Score=79.20 Aligned_cols=55 Identities=25% Similarity=0.352 Sum_probs=45.6
Q ss_pred eEEEecCCCcccc-cCCCCEEEEEeeeeccCCCCcceEEEEecCCCCCCCCCCceEEEEEEEeCCCeEE
Q 029367 53 EIRFIPSSSMYPT-LRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAGDLVQ 120 (194)
Q Consensus 53 ~~~~V~~~SM~Pt-l~~Gd~vlv~k~~~~~~~~~rGDiVvf~~p~~~~~~~~~~~~vKRVvglpGD~V~ 120 (194)
....|.|+||+|+ +.+||.+++++. .+++.||+|++.. .+...+||+. .+|+.+.
T Consensus 111 ~~~~v~GdSM~p~~i~~Gd~v~vd~~----~~~~~G~i~v~~~--------~~~~~vKrl~-~~~~~~~ 166 (202)
T 1jhf_A 111 FLLRVSGMSMKDIGIMDGDLLAVHKT----QDVRNGQVVVARI--------DDEVTVKRLK-KQGNKVE 166 (202)
T ss_dssp EEEECCSSTTGGGTCCTTCEEEEEEC----SCCCTTSEEEEEE--------TTEEEEEEEE-EETTEEE
T ss_pred EEEEECCCCCCCCCCCCCCEEEEecc----CCcCCCeEEEEEE--------CCEEEEEEEE-EeCCEEE
Confidence 4678999999999 999999999875 4689999999987 3578999998 4555443
No 6
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=98.63 E-value=7.4e-08 Score=77.30 Aligned_cols=87 Identities=15% Similarity=0.207 Sum_probs=62.8
Q ss_pred eEEEecCCCcc------cccCCCCEEEEEeeeeccCCCCcceEEEEecCCCCCCCCCCceEEEEEEEeCCCeEEEeCCEE
Q 029367 53 EIRFIPSSSMY------PTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAGDLVQVRDGSL 126 (194)
Q Consensus 53 ~~~~V~~~SM~------Ptl~~Gd~vlv~k~~~~~~~~~rGDiVvf~~p~~~~~~~~~~~~vKRVvglpGD~V~i~~~~v 126 (194)
....|.|+||+ |++.+||+++|++. .+++.||+|++... .+...+||+...+
T Consensus 141 ~~l~V~GdSM~~~~g~~P~i~~Gd~v~vd~~----~~~~~g~ivv~~~~-------~~~~~vKrl~~~~----------- 198 (236)
T 3bdn_A 141 FWLEVEGNSMTAPTGSKPSFPDGMLILVDPE----QAVEPGDFCIARLG-------GDEFTFKKLIRGS----------- 198 (236)
T ss_dssp EEEECCSSSSCCCSSCSSCCCSSCEEEECCS----SCCCTTSEEEEEST-------TTCCCCEEEECCS-----------
T ss_pred EEEEEeCCCcCCCCCCCCcCCCCCEEEECCC----CCCCCCcEEEEEEC-------CCeEEEEEEEEcC-----------
Confidence 46689999999 99999999999875 47899999999872 3578999998533
Q ss_pred EECCEEcccchhccCCCCCCceeeecCCeEEEecCCCCCCCCCCccccccCCCeeEEEEEEEeCCC
Q 029367 127 YVNGIAQNEDFIAEHPKYTSDLTYVPVGYVYVLGDNRNNSFDSHVWGPLPVKNIAGRYLTRCYRPS 192 (194)
Q Consensus 127 ~vnG~~~~~~~~~~~~~~~~~~~~vp~g~yfvlGDn~~~S~DSR~~G~V~~~~I~Gkv~~~~~p~~ 192 (194)
|.+++..+|+. +.....- ..-+|+|+|+..++|..
T Consensus 199 ---------------------------~~~~L~s~N~~--y~~~~~~--~~~~IiG~Vv~~~~~~~ 233 (236)
T 3bdn_A 199 ---------------------------GQVFLQPLNPQ--YPMIPCN--ESCSVVGKVIASQWPEE 233 (236)
T ss_dssp ---------------------------SSCEEECSSTT--SCCBC----CCCEEEEEEEECCCCSS
T ss_pred ---------------------------CcEEEEeCCCC--CCCeecC--CCcEEEEEEEEEEcCHH
Confidence 33445566652 1111111 34579999999988754
No 7
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=98.60 E-value=4.9e-07 Score=71.12 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=42.8
Q ss_pred ceEEEecCCCc-ccccCCCCEEEEEeeeeccCCCCcceEEEEecCCCCCCCCCCceEEEEEEE
Q 029367 52 SEIRFIPSSSM-YPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVA 113 (194)
Q Consensus 52 ~~~~~V~~~SM-~Ptl~~Gd~vlv~k~~~~~~~~~rGDiVvf~~p~~~~~~~~~~~~vKRVvg 113 (194)
.....|.|+|| +|++.+||.+++++. ..++.||+|++.. .+...+||+.-
T Consensus 109 ~f~l~v~GdSM~~p~i~~GD~viv~~~----~~~~~G~ivv~~~--------~~~~~vKr~~~ 159 (196)
T 3k2z_A 109 HFLLKVKGESMIEEHICDGDLVLVRRQ----DWAQNGDIVAAMV--------DGEVTLAKFYQ 159 (196)
T ss_dssp EEEEECCSSTTGGGTCCTTCEEEEEEC----SCCCTTCEEEEEE--------TTEEEEEEEEE
T ss_pred EEEEEEeCCCcCCCCCCCCCEEEEecc----CcCCCCCEEEEEE--------CCcEEEEEEEE
Confidence 45678999999 699999999999985 5789999999987 35899999864
No 8
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=95.87 E-value=0.052 Score=41.28 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=31.9
Q ss_pred CCcccccCCCCEEEEEeeeeccCCCCcceEEEEecCCCCCCCCCCceEEEEEEEeCCCeEE
Q 029367 60 SSMYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAGDLVQ 120 (194)
Q Consensus 60 ~SM~Ptl~~Gd~vlv~k~~~~~~~~~rGDiVvf~~p~~~~~~~~~~~~vKRVvglpGD~V~ 120 (194)
++|...-.+||.++|++. .+..|+++++.. .+...+||+.-.+|+.+.
T Consensus 113 ~~~~~v~~~Gd~v~Vd~~-----~~~~g~i~vv~~--------~g~~~vKrl~~~~~~~i~ 160 (189)
T 2fjr_A 113 TDGMAIRSEGKIYFVDKQ-----ASLSDGLWLVDI--------KGAISIRELTKLPGRKLH 160 (189)
T ss_dssp SSEEEEEETTEEEEEETT-----CCSCSEEEEEEE--------TTEEEEEEEEEETTTEEE
T ss_pred CCeEEEeeCCcEEEEEcC-----CccCCCEEEEEe--------CCeEEEEEEEECCCCEEE
Confidence 344444478888888763 356688888876 346788888765554443
No 9
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=84.56 E-value=3.2 Score=31.35 Aligned_cols=104 Identities=15% Similarity=0.067 Sum_probs=48.1
Q ss_pred cccccCCCCEEEEEeeeeccCCCCcceEEEEecCCCCCCCCCCceEEEEEEEeCCCeEEEeCCEEEECCEEcccchhccC
Q 029367 62 MYPTLRIGDRIIVEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAGDLVQVRDGSLYVNGIAQNEDFIAEH 141 (194)
Q Consensus 62 M~Ptl~~Gd~vlv~k~~~~~~~~~rGDiVvf~~p~~~~~~~~~~~~vKRVvglpGD~V~i~~~~v~vnG~~~~~~~~~~~ 141 (194)
.+|....++........+.-..++.||.|.+..+. .+..++|.||..+--+ .+|..+++++-.-.+--...
T Consensus 5 g~~~~~~~~r~~y~~~~~~g~~~~vGD~V~v~~~~-----~~~~p~I~rI~~i~~~----~~g~~~v~v~WfyRPeet~~ 75 (174)
T 1w4s_A 5 GSAGLSSLHRTYSQDCSFKNSMYHVGDYVYVEPAE-----ANLQPHIVCIERLWED----SAGEKWLYGCWFYRPNETFH 75 (174)
T ss_dssp ---------------------CCCTTCEEEECCSS-----TTSCCEEEEEEEEEEC----TTCCEEEEEEEEECGGGSCC
T ss_pred CCccccCCCcEEeEEEEECCEEEECCCEEEEeCCC-----CCCCCEEEEEEEEEEc----CCCCEEEEEEEecCHHHccc
Confidence 34666666666655554445678999999998765 2456788888864222 24555665553322111100
Q ss_pred CCCCCceeeecCCeEEEecCCCCCCCCCCccccccCCCeeEEEEEEE
Q 029367 142 PKYTSDLTYVPVGYVYVLGDNRNNSFDSHVWGPLPVKNIAGRYLTRC 188 (194)
Q Consensus 142 ~~~~~~~~~vp~g~yfvlGDn~~~S~DSR~~G~V~~~~I~Gkv~~~~ 188 (194)
.....+ -++++|.. .++--++.+.|+||..-+.
T Consensus 76 --~~~~~~--~~~EvF~S----------~~~d~~~~~~I~gkC~V~~ 108 (174)
T 1w4s_A 76 --LATRKF--LEKEVFKS----------DYYNKVPVSKILGKCVVMF 108 (174)
T ss_dssp --CTTCEE--ETTEEEEE----------EEEEEEEGGGEEEEEEEEE
T ss_pred --ccCCcC--CCCeeEEe----------CCcceecHHHeeeeEEEEE
Confidence 001111 26777773 2445688889999986443
No 10
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=72.83 E-value=22 Score=25.43 Aligned_cols=26 Identities=12% Similarity=0.302 Sum_probs=18.0
Q ss_pred cCCeEEEecCCCCCCCCCCccccccCC
Q 029367 152 PVGYVYVLGDNRNNSFDSHVWGPLPVK 178 (194)
Q Consensus 152 p~g~yfvlGDn~~~S~DSR~~G~V~~~ 178 (194)
.+|...++.++. +..-+|-||||++|
T Consensus 80 ddNa~Vlin~~~-~p~GTrI~GpVarE 105 (122)
T 3v2d_O 80 DDNAAVIINNQL-EPRGTRVFGPVARE 105 (122)
T ss_dssp SSCEEEEECTTS-CBSSSCBCSCBCTH
T ss_pred CCcEEEEECCCC-CEeeeEEEccchHH
Confidence 344555555543 77889999999875
No 11
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=65.37 E-value=26 Score=24.98 Aligned_cols=27 Identities=15% Similarity=0.400 Sum_probs=18.0
Q ss_pred cCCeEEEecCCCCCCCCCCccccccCC
Q 029367 152 PVGYVYVLGDNRNNSFDSHVWGPLPVK 178 (194)
Q Consensus 152 p~g~yfvlGDn~~~S~DSR~~G~V~~~ 178 (194)
.+|...++.++..+..-+|-||||++|
T Consensus 80 ddNa~Vlin~~~g~p~GTrI~GpVarE 106 (122)
T 3r8s_K 80 DGNACVLLNNNSEQPIGTRIFGPVTRE 106 (122)
T ss_dssp SSCEEEEEETTTEEESCSCBCSCCCGG
T ss_pred CCceEEEEeCCCCCEeeeEEEccccHH
Confidence 345555555552367788999999876
No 12
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=59.20 E-value=34 Score=24.32 Aligned_cols=26 Identities=8% Similarity=0.268 Sum_probs=18.3
Q ss_pred cCCeEEEecCCCCCCCCCCccccccCC
Q 029367 152 PVGYVYVLGDNRNNSFDSHVWGPLPVK 178 (194)
Q Consensus 152 p~g~yfvlGDn~~~S~DSR~~G~V~~~ 178 (194)
.+|...++.++ .+-.-+|-||||++|
T Consensus 80 ddNa~Vlin~~-g~p~GTrI~GPVarE 105 (121)
T 3bbo_M 80 DDNAAVIIDQE-GNPKGTRIFGAIARE 105 (121)
T ss_dssp SSCEEEECCTT-SSCSSSCCCSCCCGG
T ss_pred CCceEEEECCC-CCEeEeEEEcCcCHH
Confidence 34555555554 378889999999976
No 13
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=55.90 E-value=40 Score=23.98 Aligned_cols=27 Identities=11% Similarity=0.391 Sum_probs=19.0
Q ss_pred ecCCeEEEecCCCCCCCCCCccccccCC
Q 029367 151 VPVGYVYVLGDNRNNSFDSHVWGPLPVK 178 (194)
Q Consensus 151 vp~g~yfvlGDn~~~S~DSR~~G~V~~~ 178 (194)
..+|...++.++. +-.-+|-||||+++
T Consensus 79 FddNa~Vlin~~g-~p~GTrI~GPVarE 105 (122)
T 1whi_A 79 FDENACVIIRDDK-SPRGTRIFGPVARE 105 (122)
T ss_dssp CSSCEEEEECTTS-CBSSSCBCSCBCTH
T ss_pred eCCceEEEECCCC-CEeeeEEEccchHH
Confidence 3445555665553 77889999999875
No 14
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.67 E-value=12 Score=26.29 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=15.4
Q ss_pred CCCCEEEEEeeeeccC---CCCcceEEEEecC
Q 029367 67 RIGDRIIVEKASYYFR---NPSIHDIVTFRAP 95 (194)
Q Consensus 67 ~~Gd~vlv~k~~~~~~---~~~rGDiVvf~~p 95 (194)
..|..+++. ++..++ -+.+||+|++...
T Consensus 35 ~nG~~~la~-i~GK~Rk~IwI~~GD~VlVe~~ 65 (111)
T 2dgy_A 35 AQGQRFLVS-MPSKYRKNIWIKRGDFLIVDPI 65 (111)
T ss_dssp TTSCEEEEE-CCTTCCSCCCCCSSCEEEEEEC
T ss_pred CCCCEEEEE-echhhcccEEEcCCCEEEEEec
Confidence 456555543 222222 3578888888763
No 15
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=47.20 E-value=7.8 Score=26.86 Aligned_cols=12 Identities=17% Similarity=0.113 Sum_probs=8.3
Q ss_pred CCCcceEEEEec
Q 029367 83 NPSIHDIVTFRA 94 (194)
Q Consensus 83 ~~~rGDiVvf~~ 94 (194)
-+.+||+|++..
T Consensus 58 wI~~GD~VlVe~ 69 (102)
T 1jt8_A 58 WVREGDVVIVKP 69 (102)
T ss_dssp CCCSCEEEEECC
T ss_pred EecCCCEEEEEe
Confidence 357777777765
No 16
>2xvs_A Tetratricopeptide repeat protein 5; antitumor protein, P53 cofactor, stress-response; 1.80A {Homo sapiens}
Probab=44.50 E-value=97 Score=23.19 Aligned_cols=56 Identities=20% Similarity=0.014 Sum_probs=32.8
Q ss_pred CCCCEEEEEeeeeccCC-CCcceEEEEecCCCCCCCCCCceEEEEEEEeCCC-eEEEe------CCEEEECCEEc
Q 029367 67 RIGDRIIVEKASYYFRN-PSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAGD-LVQVR------DGSLYVNGIAQ 133 (194)
Q Consensus 67 ~~Gd~vlv~k~~~~~~~-~~rGDiVvf~~p~~~~~~~~~~~~vKRVvglpGD-~V~i~------~~~v~vnG~~~ 133 (194)
..|+...+.-+.-.... +..||.|++..| +++.+-....| .+.++ ...+.+||+.+
T Consensus 102 ~~g~c~avsVYNl~~~~G~~iGDsV~IpeP-----------~v~~v~i~~~~k~~~f~~IRVd~P~~l~vNGk~~ 165 (166)
T 2xvs_A 102 SDGPCYAVMVYNIVQSWGVLIGDSVAIPEP-----------NLRLHRIQHKGKDYSFSSVRVETPLLLVVNGKPQ 165 (166)
T ss_dssp SSSCCEEEEECCCCSSCCCCTTCEEEEESC-----------EEEEEEEEETTEEEEEEEEEESCGGGCEETTEEC
T ss_pred CCCCEEEEEEEeccCCcceEecCEEEeCCC-----------cEEEEecccCCceEEEeEEEEcCcceEEEcCCcC
Confidence 34565555544322223 788999998875 55555554343 33332 45688888865
No 17
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=44.27 E-value=79 Score=22.94 Aligned_cols=28 Identities=14% Similarity=0.149 Sum_probs=20.2
Q ss_pred eecCCeEEEecCCCCCCCCCCccccccCC
Q 029367 150 YVPVGYVYVLGDNRNNSFDSHVWGPLPVK 178 (194)
Q Consensus 150 ~vp~g~yfvlGDn~~~S~DSR~~G~V~~~ 178 (194)
...+|...++.++ .+-.-+|-||||++|
T Consensus 94 ~FddNA~Vlin~~-g~p~GTrI~GPVarE 121 (137)
T 3u5e_V 94 YFEDNAGVIANPK-GEMKGSAITGPVGKE 121 (137)
T ss_dssp EESSCEEEEBCTT-CCBSSSCBCSCBCHH
T ss_pred EcCCceEEEECCC-CCEeeeEEEcchhHH
Confidence 3445666666655 378899999999875
No 18
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=39.76 E-value=68 Score=23.12 Aligned_cols=28 Identities=11% Similarity=0.239 Sum_probs=19.4
Q ss_pred eecCCeEEEecCCCCCCCCCCccccccCC
Q 029367 150 YVPVGYVYVLGDNRNNSFDSHVWGPLPVK 178 (194)
Q Consensus 150 ~vp~g~yfvlGDn~~~S~DSR~~G~V~~~ 178 (194)
...+|...++.++. +-.-+|-||||++|
T Consensus 89 ~FddNA~Vlin~~g-~p~GTrI~GPVarE 116 (132)
T 1vq8_K 89 KFEDNAAVIVDENE-DPRGTELKGPIARE 116 (132)
T ss_dssp EESSCEEEEECTTS-CBSSSCBCSEECHH
T ss_pred EeCCceEEEECCCC-CEeEEEEEcCcCHH
Confidence 34455566665553 77889999999875
No 19
>2jv8_A Uncharacterized protein NE1242; solution structure, NESG, structural genomics, unknown function, PSI-2; NMR {Nitrosomonas europaea atcc 19718}
Probab=35.64 E-value=47 Score=20.45 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=16.5
Q ss_pred eCCCeEEEeCC-EEEECCEEcc
Q 029367 114 KAGDLVQVRDG-SLYVNGIAQN 134 (194)
Q Consensus 114 lpGD~V~i~~~-~v~vnG~~~~ 134 (194)
..|.++.++++ .+.|||+.+.
T Consensus 8 feggtidieddtsltingkeis 29 (73)
T 2jv8_A 8 FEGGTIDIEDDTSLTINGKEIS 29 (73)
T ss_dssp ETTEEEEEETTEEEEETTEECC
T ss_pred ecCCeeeeccCceeEECCEEee
Confidence 47889999754 6999999764
No 20
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=34.93 E-value=18 Score=23.78 Aligned_cols=12 Identities=17% Similarity=-0.042 Sum_probs=8.8
Q ss_pred CCCcceEEEEec
Q 029367 83 NPSIHDIVTFRA 94 (194)
Q Consensus 83 ~~~rGDiVvf~~ 94 (194)
.+..||.|.+..
T Consensus 53 ~Il~GD~V~ve~ 64 (79)
T 3i4o_A 53 RILPEDRVVVEL 64 (79)
T ss_dssp CCCTTCEEEEEE
T ss_pred cCCCCCEEEEEE
Confidence 467788888765
No 21
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=31.58 E-value=92 Score=23.15 Aligned_cols=34 Identities=26% Similarity=0.286 Sum_probs=25.0
Q ss_pred CCCcceEEEEecCCCCCCCCCCceEEEEEEEeCCCeEEEeC
Q 029367 83 NPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAGDLVQVRD 123 (194)
Q Consensus 83 ~~~rGDiVvf~~p~~~~~~~~~~~~vKRVvglpGD~V~i~~ 123 (194)
+++.|+.+.+..+ .+..+.-+|..+.+|+|.++.
T Consensus 112 ~~~~G~~~~~~~~-------~G~~~~~~V~~v~~~~V~vD~ 145 (169)
T 4dt4_A 112 EPEIGAIMLFTAM-------DGSEMPGVIREINGDSITVDF 145 (169)
T ss_dssp CCCTTCEEEEECT-------TSCEEEEEEEEEETTEEEEEC
T ss_pred CCCCCcEEEEECC-------CCCEEEEEEEEEcCCEEEEeC
Confidence 4678888888764 455677788888888888864
No 22
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.57 E-value=80 Score=23.01 Aligned_cols=28 Identities=7% Similarity=0.124 Sum_probs=20.5
Q ss_pred eecCCeEEEecCCCCCCCCCCccccccCC
Q 029367 150 YVPVGYVYVLGDNRNNSFDSHVWGPLPVK 178 (194)
Q Consensus 150 ~vp~g~yfvlGDn~~~S~DSR~~G~V~~~ 178 (194)
...+|...++.++ .+-.-+|-||||++|
T Consensus 98 ~FddNA~VLin~~-g~p~GTRI~GPVarE 125 (141)
T 3j21_J 98 KFEDNAAVIVTPE-GVPRGTEIRGPVARE 125 (141)
T ss_dssp CCSSCEEEEBCTT-SCBCSSCCCSEECHH
T ss_pred EcCCcEEEEECCC-CCEeeeEEEccccHH
Confidence 3455666666655 478899999999875
No 23
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=31.33 E-value=54 Score=24.77 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=20.3
Q ss_pred CCEEEECCEEcccchhccCCCCCCceeeecCCeEEEec
Q 029367 123 DGSLYVNGIAQNEDFIAEHPKYTSDLTYVPVGYVYVLG 160 (194)
Q Consensus 123 ~~~v~vnG~~~~~~~~~~~~~~~~~~~~vp~g~yfvlG 160 (194)
+..+||||+.+.++.... .-..+.+...++|...
T Consensus 139 ~a~t~VNG~~I~~~~~L~----~GDrI~lG~~h~Frfn 172 (184)
T 4egx_A 139 GADTYVNGKKVTEPSILR----SGNRIIMGKSHVFRFN 172 (184)
T ss_dssp TCCEEETTEECCSCEECC----TTCEEEETTTEEEEEE
T ss_pred CCeEEEcCEEccccEEcC----CCCEEEECCCCEEEEC
Confidence 567999999987643211 1234555556666554
No 24
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=29.38 E-value=1.2e+02 Score=21.32 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=14.6
Q ss_pred CCCeEEEe---CCEEEECCEEcccc
Q 029367 115 AGDLVQVR---DGSLYVNGIAQNED 136 (194)
Q Consensus 115 pGD~V~i~---~~~v~vnG~~~~~~ 136 (194)
+++.+.++ .+..||||+++.++
T Consensus 78 ~~g~~~l~dl~~ngt~VNG~~V~~~ 102 (124)
T 3fm8_A 78 SEGQVMLTPQKNTRTFVNGSSVSSP 102 (124)
T ss_dssp TTSCEEEEECTTCCEEETTEECCSC
T ss_pred CCCeEEEEECCCCCEEECCEEcCCc
Confidence 34445443 46799999998753
No 25
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=28.89 E-value=37 Score=24.88 Aligned_cols=12 Identities=17% Similarity=0.066 Sum_probs=8.6
Q ss_pred CCCcceEEEEec
Q 029367 83 NPSIHDIVTFRA 94 (194)
Q Consensus 83 ~~~rGDiVvf~~ 94 (194)
-+.+||+|++..
T Consensus 69 wI~~GD~VlVe~ 80 (143)
T 1d7q_A 69 WINTSDIILVGL 80 (143)
T ss_dssp CCCTTCEEEEEC
T ss_pred EecCCCEEEEee
Confidence 356788888875
No 26
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=26.50 E-value=32 Score=22.99 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=10.9
Q ss_pred ccccchhhhhHHHHHHHHHHHHH
Q 029367 27 WAFLRWPGLDGSLKILIGLLLWS 49 (194)
Q Consensus 27 ~~~l~~~~~~~~~~l~~~~li~~ 49 (194)
|++.++..+.+++++++++++..
T Consensus 65 wkn~K~~iii~~iv~~il~ii~~ 87 (91)
T 3hd7_A 65 WKNLKMMIILGVICAIILIIIIV 87 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555544444444444443
No 27
>3uep_A YSCQ-C, type III secretion protein; cytosol, protein transport; 2.25A {Yersinia pseudotuberculosis}
Probab=25.62 E-value=55 Score=22.03 Aligned_cols=12 Identities=0% Similarity=0.102 Sum_probs=7.8
Q ss_pred CCCcceEEEEec
Q 029367 83 NPSIHDIVTFRA 94 (194)
Q Consensus 83 ~~~rGDiVvf~~ 94 (194)
+++.||++.+..
T Consensus 39 ~L~~GdVI~Ld~ 50 (96)
T 3uep_A 39 SLEPGSLIDLTT 50 (96)
T ss_dssp HCCTTCEEEEEE
T ss_pred cCCCCCEEEeCC
Confidence 446777777765
No 28
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=24.20 E-value=1.7e+02 Score=19.80 Aligned_cols=12 Identities=25% Similarity=0.554 Sum_probs=9.1
Q ss_pred CCCCEEEEEeee
Q 029367 67 RIGDRIIVEKAS 78 (194)
Q Consensus 67 ~~Gd~vlv~k~~ 78 (194)
.-||+|++.+..
T Consensus 7 PL~DRVlVk~~e 18 (99)
T 1p3h_A 7 PLEDKILVQANE 18 (99)
T ss_dssp ECTTEEEEEECC
T ss_pred EeCCEEEEEEcc
Confidence 358999998864
No 29
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=24.11 E-value=2e+02 Score=20.57 Aligned_cols=34 Identities=12% Similarity=-0.095 Sum_probs=27.5
Q ss_pred CCCcceEEEEecCCCCCCCCCCceEEEEEEEeCCCeEEEeC
Q 029367 83 NPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAGDLVQVRD 123 (194)
Q Consensus 83 ~~~rGDiVvf~~p~~~~~~~~~~~~vKRVvglpGD~V~i~~ 123 (194)
.++.|+.+.+..+ .+..+.-+|..+-+|+|.++-
T Consensus 93 ~~~~G~~~~~~~~-------~G~~~~~~V~~v~~~~v~vD~ 126 (151)
T 2kr7_A 93 ELEKGMSVFGQTE-------DNQTIQAIIKDFSATHVMVDY 126 (151)
T ss_dssp CCCTTCEEEEEET-------TTEEEEEEEEEECSSEEEEEE
T ss_pred CCccCCEEEEECC-------CCCEEEEEEEEECCCEEEEEC
Confidence 6889999998874 456678889999999999864
No 30
>4h4g_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Burkholderia thailandensis}
Probab=23.79 E-value=43 Score=24.59 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=24.6
Q ss_pred EEeeeeccCCCCcceEEEEecCCCCCCCCCCceEEEEEEEeCCCeEEEeCCEEEECCEEccc
Q 029367 74 VEKASYYFRNPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAGDLVQVRDGSLYVNGIAQNE 135 (194)
Q Consensus 74 v~k~~~~~~~~~rGDiVvf~~p~~~~~~~~~~~~vKRVvglpGD~V~i~~~~v~vnG~~~~~ 135 (194)
+++..+ .+.+..||.+.++.. ++ +.. +. +..-++.++|||+.+.+
T Consensus 102 i~~~kF-~~~V~PGd~L~i~v~-----------~~-~~~---~~-~~~~~~~~~v~g~~va~ 146 (160)
T 4h4g_A 102 IDNARF-KRVVEPGDQLILNVT-----------FE-RYI---RG-IWKFKAVAEVDGKVAAE 146 (160)
T ss_dssp EEEEEE-CSCCCTTCEEEEEEE-----------EE-EEE---TT-EEEEEEEEEETTEEEEE
T ss_pred cceEEE-CcccCCCCEEEEEEE-----------EE-Eee---CC-EEEEEEEEEECCEEEEE
Confidence 444433 356788998877651 22 211 12 33335677888876654
No 31
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=23.25 E-value=1.5e+02 Score=21.58 Aligned_cols=34 Identities=18% Similarity=0.024 Sum_probs=26.2
Q ss_pred CCCcceEEEEecCCCCCCCCCCceEEEEEEEeCCCeEEEeC
Q 029367 83 NPSIHDIVTFRAPFQYPGLGEEDVFIKRIVAKAGDLVQVRD 123 (194)
Q Consensus 83 ~~~rGDiVvf~~p~~~~~~~~~~~~vKRVvglpGD~V~i~~ 123 (194)
.++.|+.+.+..+ .+..+.-+|..+-+|+|.++.
T Consensus 84 ~~~~G~~~~~~~~-------~G~~~~~~V~~v~~~~v~vD~ 117 (158)
T 3cgm_A 84 EVVPGAQFYAQDM-------EGNPMPLTVVAVEGEEVTVDF 117 (158)
T ss_dssp CCCTTCEEEEEET-------TTEEEEEEEEEEETTEEEEEC
T ss_pred CCccCCEEEEECC-------CCCEEEEEEEEECCCEEEEeC
Confidence 5788988888764 356677788888888888864
No 32
>4b8u_A 3-hydroxydecanoyl-[acyl-carrier-protein] dehydrat; lyase, fatty acid biosynthesis, inhibitor, bacterial virulen discovery; HET: IBK; 2.76A {Pseudomonas aeruginosa}
Probab=22.88 E-value=1.4e+02 Score=22.26 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=27.1
Q ss_pred CCCCcce-EEEEecCCCCCCCCCCceEEEEEEEeCCCeEEEeCCEEEECCEEccc
Q 029367 82 RNPSIHD-IVTFRAPFQYPGLGEEDVFIKRIVAKAGDLVQVRDGSLYVNGIAQNE 135 (194)
Q Consensus 82 ~~~~rGD-iVvf~~p~~~~~~~~~~~~vKRVvglpGD~V~i~~~~v~vnG~~~~~ 135 (194)
+.+..|| +|.++. .+||+....+ .+.+-++.++|||+.+.+
T Consensus 115 ~~V~Pgd~lv~~ei------------~i~~v~~~~~-~~~~~dg~~~VDG~~v~e 156 (171)
T 4b8u_A 115 GQVLPTAKKVTYNI------------HIKRTINRSL-VLAIADGTVSVDGREIYS 156 (171)
T ss_dssp CCCCTTCCEEEEEE------------EEEEEECSSS-EEEEEEEEEEETTEEEEE
T ss_pred eeECCCCEEEEEEE------------EEEEEEeCCc-eEEEEEEEEEECCEEEEE
Confidence 5667777 555554 5677765443 444557889999987654
No 33
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=20.86 E-value=2.2e+02 Score=23.79 Aligned_cols=44 Identities=25% Similarity=0.244 Sum_probs=26.5
Q ss_pred CCCcceEEEEecCCCCCCCCCCceEEEEE-EEeCCCeEEE-----e-CCEEEECCEEcccch
Q 029367 83 NPSIHDIVTFRAPFQYPGLGEEDVFIKRI-VAKAGDLVQV-----R-DGSLYVNGIAQNEDF 137 (194)
Q Consensus 83 ~~~rGDiVvf~~p~~~~~~~~~~~~vKRV-vglpGD~V~i-----~-~~~v~vnG~~~~~~~ 137 (194)
.+..||.|++..|. +|.| +-..|+.+.+ + ...+.|||++++..-
T Consensus 411 ~~~~gd~~~~~~p~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (474)
T 4abn_A 411 GVLIGDSVAIPEPN-----------LRHHQIRHKGKDYSFSSVRVETPLLLVVNGKPQNSSS 461 (474)
T ss_dssp CCCTTCEEEEESCE-----------EEEEEEEETTEEEEEEEEEESCGGGCEETTEECCGGG
T ss_pred ceecCceEeecCCc-----------ceEeeccccCeeeEEeEEEEcCcceeeECCEeCChhh
Confidence 47889988887653 3222 2223443333 2 467889999887653
No 34
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=20.21 E-value=1.1e+02 Score=19.74 Aligned_cols=12 Identities=8% Similarity=0.069 Sum_probs=8.8
Q ss_pred CCCcceEEEEec
Q 029367 83 NPSIHDIVTFRA 94 (194)
Q Consensus 83 ~~~rGDiVvf~~ 94 (194)
+++.||++-+..
T Consensus 35 ~L~~GdVi~Ld~ 46 (84)
T 1o9y_A 35 RLDAGTILEVTG 46 (84)
T ss_dssp TCCTTCEEEECS
T ss_pred cCCCCCEEEeCC
Confidence 567788887765
Done!