Query 029369
Match_columns 194
No_of_seqs 163 out of 1277
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 11:49:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029369.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029369hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3309 Ferredoxin [Energy pro 99.9 2.2E-21 4.7E-26 157.1 9.3 133 26-174 13-150 (159)
2 PLN02593 adrenodoxin-like ferr 99.8 3.3E-20 7.1E-25 144.3 11.3 98 58-170 1-103 (117)
3 PTZ00490 Ferredoxin superfamil 99.8 2.9E-20 6.4E-25 149.7 11.1 99 55-168 33-136 (143)
4 TIGR02007 fdx_isc ferredoxin, 99.8 1.2E-18 2.5E-23 133.8 9.7 84 76-170 16-102 (110)
5 COG0633 Fdx Ferredoxin [Energy 99.7 1E-16 2.3E-21 121.8 9.4 71 77-155 16-88 (102)
6 CHL00134 petF ferredoxin; Vali 99.7 4.5E-16 9.8E-21 117.5 9.2 78 76-171 17-96 (99)
7 TIGR02008 fdx_plant ferredoxin 99.6 8.5E-16 1.8E-20 115.3 8.8 77 76-170 15-93 (97)
8 PLN03136 Ferredoxin; Provision 99.6 1.9E-15 4.1E-20 122.4 9.3 95 54-173 51-147 (148)
9 PTZ00038 ferredoxin; Provision 99.6 6.2E-15 1.3E-19 123.9 10.4 79 76-172 107-187 (191)
10 PRK10713 2Fe-2S ferredoxin Yfa 99.6 7.1E-15 1.5E-19 107.7 9.0 71 77-166 12-83 (84)
11 PRK05464 Na(+)-translocating N 99.6 3.7E-15 8E-20 136.0 7.6 93 53-168 31-125 (409)
12 TIGR01941 nqrF NADH:ubiquinone 99.6 1.5E-14 3.2E-19 131.8 10.6 91 55-168 29-121 (405)
13 cd00207 fer2 2Fe-2S iron-sulfu 99.5 6.2E-14 1.3E-18 100.0 6.2 72 76-165 10-83 (84)
14 PRK07609 CDP-6-deoxy-delta-3,4 99.5 1.6E-13 3.6E-18 121.3 8.2 81 76-172 12-94 (339)
15 PRK05713 hypothetical protein; 99.4 1.8E-13 3.8E-18 120.5 6.4 75 76-168 9-85 (312)
16 PRK11872 antC anthranilate dio 99.4 4.2E-13 9E-18 119.7 8.8 79 76-170 15-95 (340)
17 PF00111 Fer2: 2Fe-2S iron-sul 99.4 3E-13 6.6E-18 96.0 4.6 69 76-155 8-78 (78)
18 PRK10684 HCP oxidoreductase, N 99.4 1E-12 2.2E-17 116.4 8.7 72 76-165 258-331 (332)
19 COG2871 NqrF Na+-transporting 99.4 8.6E-13 1.9E-17 117.7 7.0 77 76-167 47-125 (410)
20 TIGR02160 PA_CoA_Oxy5 phenylac 99.3 4.1E-12 8.9E-17 112.9 8.8 72 78-166 277-350 (352)
21 COG3894 Uncharacterized metal- 99.3 4.8E-12 1E-16 119.0 7.3 81 81-176 15-95 (614)
22 PF13085 Fer2_3: 2Fe-2S iron-s 99.1 7.8E-11 1.7E-15 91.3 5.6 92 57-172 1-96 (110)
23 PLN00129 succinate dehydrogena 99.0 5.1E-10 1.1E-14 98.9 6.5 90 58-171 46-136 (276)
24 PRK13552 frdB fumarate reducta 98.9 1.4E-09 3E-14 93.9 6.0 90 58-171 7-97 (239)
25 COG0479 FrdB Succinate dehydro 98.8 7.3E-09 1.6E-13 89.7 5.5 90 57-171 4-93 (234)
26 PRK08640 sdhB succinate dehydr 98.8 5.7E-09 1.2E-13 90.7 4.7 88 58-171 8-102 (249)
27 PRK12575 succinate dehydrogena 98.8 6.9E-09 1.5E-13 89.6 5.0 89 58-172 7-96 (235)
28 PRK12385 fumarate reductase ir 98.7 7.4E-09 1.6E-13 89.6 4.1 93 54-171 3-97 (244)
29 PRK06259 succinate dehydrogena 98.7 3.4E-08 7.4E-13 92.0 6.8 83 58-169 6-88 (486)
30 PRK12577 succinate dehydrogena 98.7 5.9E-08 1.3E-12 87.2 7.8 88 58-171 5-102 (329)
31 PRK12576 succinate dehydrogena 98.7 9.7E-08 2.1E-12 84.2 8.4 89 58-171 11-101 (279)
32 PRK07569 bidirectional hydroge 98.6 1E-07 2.2E-12 81.6 8.0 72 55-167 1-77 (234)
33 PRK12386 fumarate reductase ir 98.6 5.5E-08 1.2E-12 84.9 5.5 78 71-171 17-94 (251)
34 PRK05950 sdhB succinate dehydr 98.6 1.2E-07 2.5E-12 81.2 6.8 89 57-170 1-91 (232)
35 PRK07570 succinate dehydrogena 98.5 1.6E-07 3.4E-12 81.9 5.3 93 58-169 5-103 (250)
36 TIGR00384 dhsB succinate dehyd 98.4 1.4E-07 3.1E-12 79.9 3.7 74 72-171 13-88 (220)
37 PF13510 Fer2_4: 2Fe-2S iron-s 98.4 3.5E-07 7.5E-12 66.9 5.1 67 56-155 2-72 (82)
38 PRK08166 NADH dehydrogenase su 98.1 6.4E-06 1.4E-10 81.9 7.9 59 76-155 9-72 (847)
39 PRK11433 aldehyde oxidoreducta 97.6 0.00016 3.5E-09 62.2 7.2 43 76-125 61-103 (217)
40 PRK12814 putative NADPH-depend 97.5 0.00023 4.9E-09 69.2 7.0 70 56-166 2-76 (652)
41 PTZ00305 NADH:ubiquinone oxido 97.5 0.00048 1E-08 61.8 8.2 73 53-166 64-142 (297)
42 PRK07860 NADH dehydrogenase su 97.4 0.00048 1E-08 68.6 7.7 71 56-167 3-78 (797)
43 PRK08493 NADH dehydrogenase su 97.4 0.00068 1.5E-08 68.0 8.3 64 76-166 9-72 (819)
44 PRK09130 NADH dehydrogenase su 97.1 0.0013 2.9E-08 64.6 7.5 62 76-166 9-75 (687)
45 TIGR03193 4hydroxCoAred 4-hydr 97.1 0.00082 1.8E-08 54.8 4.8 76 76-180 11-88 (148)
46 TIGR01973 NuoG NADH-quinone ox 97.1 0.0012 2.7E-08 63.3 6.7 62 76-166 6-72 (603)
47 PRK09908 xanthine dehydrogenas 97.0 0.00096 2.1E-08 55.0 4.8 42 76-125 18-59 (159)
48 PRK09129 NADH dehydrogenase su 96.7 0.0045 9.8E-08 61.2 7.3 61 76-166 9-74 (776)
49 KOG3049 Succinate dehydrogenas 96.4 0.016 3.6E-07 50.5 7.8 90 56-169 47-138 (288)
50 COG3383 Uncharacterized anaero 95.9 0.02 4.4E-07 57.4 6.7 42 76-125 13-59 (978)
51 COG1034 NuoG NADH dehydrogenas 95.8 0.024 5.2E-07 56.2 6.9 63 76-163 9-71 (693)
52 TIGR03198 pucE xanthine dehydr 95.3 0.04 8.6E-07 45.0 5.5 42 76-125 13-55 (151)
53 PRK09800 putative hypoxanthine 95.0 0.019 4.2E-07 58.7 3.4 43 76-125 12-54 (956)
54 COG2080 CoxS Aerobic-type carb 94.3 0.12 2.6E-06 42.6 5.8 43 76-125 13-55 (156)
55 TIGR03313 Se_sel_red_Mo probab 92.6 0.084 1.8E-06 54.1 2.7 42 76-125 8-50 (951)
56 TIGR02963 xanthine_xdhA xanthi 91.6 0.24 5.2E-06 46.9 4.4 39 76-121 10-50 (467)
57 TIGR01372 soxA sarcosine oxida 89.8 1.3 2.9E-05 45.3 8.1 57 55-124 10-71 (985)
58 cd06218 DHOD_e_trans FAD/NAD b 89.8 0.44 9.4E-06 40.5 4.0 34 89-123 197-230 (246)
59 PRK00054 dihydroorotate dehydr 89.6 0.23 5.1E-06 42.2 2.2 34 89-123 198-231 (250)
60 PRK08345 cytochrome-c3 hydroge 89.3 0.21 4.6E-06 43.7 1.7 35 89-124 229-266 (289)
61 TIGR03311 Se_dep_Molyb_1 selen 88.6 0.54 1.2E-05 47.7 4.3 41 77-125 9-50 (848)
62 TIGR02969 mam_aldehyde_ox alde 88.4 0.7 1.5E-05 49.1 5.1 39 77-122 14-53 (1330)
63 cd06219 DHOD_e_trans_like1 FAD 88.2 0.44 9.6E-06 40.5 3.0 32 89-121 197-228 (248)
64 cd06221 sulfite_reductase_like 88.0 0.31 6.6E-06 41.7 1.9 31 89-120 207-240 (253)
65 PRK06222 ferredoxin-NADP(+) re 87.4 0.56 1.2E-05 40.8 3.2 32 89-121 198-229 (281)
66 cd06220 DHOD_e_trans_like2 FAD 85.4 0.64 1.4E-05 39.0 2.4 33 89-122 184-216 (233)
67 TIGR02911 sulfite_red_B sulfit 84.6 0.54 1.2E-05 40.5 1.6 31 89-120 207-240 (261)
68 PRK05802 hypothetical protein; 84.1 1.3 2.9E-05 39.6 4.0 33 89-122 271-305 (320)
69 PRK08221 anaerobic sulfite red 84.1 0.54 1.2E-05 40.6 1.4 31 89-120 209-242 (263)
70 PLN00192 aldehyde oxidase 82.7 2.1 4.5E-05 45.6 5.3 40 76-122 15-56 (1344)
71 KOG2282 NADH-ubiquinone oxidor 81.7 2.3 5.1E-05 41.5 4.8 46 76-124 40-86 (708)
72 cd06192 DHOD_e_trans_like FAD/ 78.6 2 4.4E-05 36.0 3.0 33 89-122 195-229 (243)
73 PRK12778 putative bifunctional 72.5 3.3 7.2E-05 41.0 3.1 32 89-121 198-229 (752)
74 PF10418 DHODB_Fe-S_bind: Iron 68.4 3.1 6.8E-05 26.6 1.3 20 105-125 3-22 (40)
75 PRK12775 putative trifunctiona 60.4 7.2 0.00016 40.4 2.9 32 89-121 198-229 (1006)
76 PRK12779 putative bifunctional 59.9 8.2 0.00018 39.8 3.1 33 89-122 864-896 (944)
77 PLN02906 xanthine dehydrogenas 57.7 10 0.00023 40.5 3.6 32 84-122 2-33 (1319)
78 COG4630 XdhA Xanthine dehydrog 56.4 24 0.00052 33.6 5.3 36 79-121 22-58 (493)
79 PRK01777 hypothetical protein; 43.6 59 0.0013 24.4 4.8 24 75-99 18-41 (95)
80 PF09791 Oxidored-like: Oxidor 33.5 28 0.00061 23.3 1.5 26 94-120 4-29 (48)
81 KOG0430 Xanthine dehydrogenase 32.4 44 0.00095 35.7 3.3 39 79-123 16-54 (1257)
82 PF03658 Ub-RnfH: RnfH family 31.7 71 0.0015 23.7 3.5 35 58-98 3-37 (84)
83 COG2440 FixX Ferredoxin-like p 20.7 47 0.001 25.5 0.9 16 110-125 66-82 (99)
No 1
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=99.85 E-value=2.2e-21 Score=157.14 Aligned_cols=133 Identities=25% Similarity=0.328 Sum_probs=105.1
Q ss_pred ccccccCCCCcceeeee-ecCCCCCCCCCCCCcEEEEEecCCCCCCCCccEEEEEecCCchHHHHHHHHCCCccccccCc
Q 029369 26 FKSKLSSPRRPKFVSFA-VNSTEPSSPEPEKPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGK 104 (194)
Q Consensus 26 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~I~v~f~~~~~~~dg~~~v~~v~v~~G~tLLr~aa~~~GI~l~~~~~~ 104 (194)
+|-..+-+.+.|..+.. .++ .+.++.+.+.|+|+|++++ |+ .+.+++..|+||| +++.++||++++
T Consensus 13 ~~~a~~~~~~~f~~~~t~~~~--~~~~~~~~e~i~Itfv~~d----G~--~~~i~g~vGdtlL-d~ah~n~idleG---- 79 (159)
T KOG3309|consen 13 SRLAPFTRNHIFRTSSTSEFS--PSKGPRKVEDIKITFVDPD----GE--EIKIKGKVGDTLL-DAAHENNLDLEG---- 79 (159)
T ss_pred hhccccccceeeccCcccccc--cccCCCCCceEEEEEECCC----CC--EEEeeeecchHHH-HHHHHcCCCccc----
Confidence 34444555555554332 222 2334455567999999874 43 3678999999999 999999999998
Q ss_pred ccCCCCceeccCcEEEEccCc-ccCCCCChHHHhccCCC---CCCeEEeeeeEeccccCCccEEEEecchhhHH
Q 029369 105 VMNCGGGGSCGTCIVEIIDGK-DLLNERTNTELRYLKKK---PESWRLACQTIVGNKENSGKVCSRTMFLLNLL 174 (194)
Q Consensus 105 ~~~C~G~G~CGTC~V~V~~G~-~~l~~~t~~E~~~L~~~---~~g~RLaCQ~~v~~~e~~gdv~i~~~~~~~~~ 174 (194)
.|+|..+|.||||+|.+-+ ..+++|+++|++||+.+ .+++||+||+.++ ++++|..+-.|-...+|.
T Consensus 80 --ACEgslACSTCHViv~~~~yekl~ep~DeE~DmLDlA~gLt~tSRLGCQI~l~-keldG~~v~vP~atrn~~ 150 (159)
T KOG3309|consen 80 --ACEGSLACSTCHVIVDEEYYEKLPEPEDEENDMLDLAFGLTETSRLGCQIVLT-KELDGMRVAVPEATRNFR 150 (159)
T ss_pred --cccccccccceEEEEcHHHHhcCCCCcchHHHHHHhhhccccccccceEEEec-cccCCcEEECcccccccc
Confidence 5999999999999999886 67899999999999986 7899999999998 999999887776666653
No 2
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=99.83 E-value=3.3e-20 Score=144.32 Aligned_cols=98 Identities=32% Similarity=0.418 Sum_probs=78.4
Q ss_pred EEEEEecCCCCCCCCccEEEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccC--cccCCCCChHH
Q 029369 58 IELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDG--KDLLNERTNTE 135 (194)
Q Consensus 58 I~v~f~~~~~~~dg~~~v~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G--~~~l~~~t~~E 135 (194)
|+|+|+++. |. .+++++..|+||| ++++++|+++++ .|+|.|.||||+|+|+++ ...++++++.|
T Consensus 1 ~~V~fi~~~----G~--~~~v~~~~G~tLl-~a~~~~gi~i~~------~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E 67 (117)
T PLN02593 1 ISVTFVDKD----GE--ERTVKAPVGMSLL-EAAHENDIELEG------ACEGSLACSTCHVIVMDEKVYNKLPEPTDEE 67 (117)
T ss_pred CEEEEEcCC----CC--EEEEEECCCCcHH-HHHHHcCCCCCc------cCCCcceeCCCEEEEecCccccCCCCCChHH
Confidence 578888764 32 2578899999999 999999999987 699999999999999643 36789999999
Q ss_pred HhccCC---CCCCeEEeeeeEeccccCCccEEEEecch
Q 029369 136 LRYLKK---KPESWRLACQTIVGNKENSGKVCSRTMFL 170 (194)
Q Consensus 136 ~~~L~~---~~~g~RLaCQ~~v~~~e~~gdv~i~~~~~ 170 (194)
.++|+. ..++||||||+.+. ++++ +++|..+..
T Consensus 68 ~~~L~~~~~~~~~sRLaCQ~~v~-~~~~-~~~v~ip~~ 103 (117)
T PLN02593 68 NDMLDLAFGLTETSRLGCQVIAK-PELD-GMRLALPAA 103 (117)
T ss_pred HHHHhcccCCCCCeEecceeEee-cCCC-CEEEEcCch
Confidence 999984 36899999999986 5554 455555433
No 3
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=99.83 E-value=2.9e-20 Score=149.67 Aligned_cols=99 Identities=23% Similarity=0.315 Sum_probs=82.2
Q ss_pred CCcEEEEEecCCCCCCCCccEEEEEecCCchHHHHHHHHC-CCccccccCcccCCCCceeccCcEEEEccCc-ccCCCCC
Q 029369 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEIIDGK-DLLNERT 132 (194)
Q Consensus 55 ~~~I~v~f~~~~~~~dg~~~v~~v~v~~G~tLLr~aa~~~-GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~-~~l~~~t 132 (194)
..+|+|+|.+++ |+ .+++++++|+||| +++.++ ++++++ .|+|.|.||||||+|.+|+ ..+++++
T Consensus 33 ~g~v~I~~~~~d----G~--~~~v~~~~G~sLL-eal~~~~~i~i~~------~CGG~g~CgtC~V~V~~g~~~~l~~~~ 99 (143)
T PTZ00490 33 PGKVKVCVKKRD----GT--HCDVEVPVGMSLM-HALRDVAKLDVEG------TCNGCMQCATCHVYLSAASFKKLGGPS 99 (143)
T ss_pred CCcEEEEEEcCC----CC--EEEEEECCCccHH-HHHHHcCCCCccc------cCCCCCEeCCCEEEECCCccccCCCCC
Confidence 458999999753 43 3688999999999 999995 688887 6999999999999999986 6788999
Q ss_pred hHHHhccCCC---CCCeEEeeeeEeccccCCccEEEEec
Q 029369 133 NTELRYLKKK---PESWRLACQTIVGNKENSGKVCSRTM 168 (194)
Q Consensus 133 ~~E~~~L~~~---~~g~RLaCQ~~v~~~e~~gdv~i~~~ 168 (194)
+.|.++|+.. .++||||||+.+. ++++|. +|+.+
T Consensus 100 ~~E~~~L~~~~~~~~gsRLaCQi~v~-~~ldgl-~V~vp 136 (143)
T PTZ00490 100 EEEEDVLAKALDVKETSRLACQVDLT-PEMDGL-EVELP 136 (143)
T ss_pred hHHHHHhhccccCCCCcEEeeeEEEe-cCCCCE-EEEeC
Confidence 9999999864 7899999999997 566544 45443
No 4
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=99.78 E-value=1.2e-18 Score=133.80 Aligned_cols=84 Identities=30% Similarity=0.471 Sum_probs=74.0
Q ss_pred EEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHHHhccCCC---CCCeEEeeee
Q 029369 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK---PESWRLACQT 152 (194)
Q Consensus 76 ~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~---~~g~RLaCQ~ 152 (194)
+++++.+|+||| ++|+++|+++++ .|+|.|.||||+|+|.+|...+++.+..|.+.|+.. .++|||+||+
T Consensus 16 ~~~~~~~g~tLL-~a~~~~gi~i~~------~CgG~G~CgtC~v~V~~G~~~~~~~~~~e~~~L~~~~~~~~~~RLaCq~ 88 (110)
T TIGR02007 16 AVVEAKPGETIL-DVALDNGIEIEH------ACEKSCACTTCHCIVREGFDSLEEASEQEEDMLDKAWGLEPDSRLSCQA 88 (110)
T ss_pred eEEEECCCChHH-HHHHHcCCCccc------cCCCCceeCCCEEEEeeccccCCCCCHHHHHHHhhccCCCCCcEEeeeE
Confidence 578899999999 999999999998 699999999999999999888888888899999753 7899999999
Q ss_pred EeccccCCccEEEEecch
Q 029369 153 IVGNKENSGKVCSRTMFL 170 (194)
Q Consensus 153 ~v~~~e~~gdv~i~~~~~ 170 (194)
.+. +++++|+.+..
T Consensus 89 ~~~----~~dl~v~~~~~ 102 (110)
T TIGR02007 89 VVA----DEDLVVEIPKY 102 (110)
T ss_pred EEc----CCCEEEEECch
Confidence 986 45899988643
No 5
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=99.70 E-value=1e-16 Score=121.79 Aligned_cols=71 Identities=32% Similarity=0.536 Sum_probs=62.0
Q ss_pred EEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHHHhccCC--CCCCeEEeeeeEe
Q 029369 77 RAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKK--KPESWRLACQTIV 154 (194)
Q Consensus 77 ~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~--~~~g~RLaCQ~~v 154 (194)
.+.+..|++|| ++|+++||++++ +|+| |.||||+|+|.+|...++++++.|+++|+. ...++||+||+++
T Consensus 16 ~~~~~~g~tiL-e~a~~~gi~i~~------~C~~-g~C~TC~v~v~~G~~~v~~~~~~e~~~l~~~~~~~~~rL~Cq~~~ 87 (102)
T COG0633 16 TEAVNEGETLL-EAAERNGIPIEY------ACRG-GACGTCRVKVLEGFDEVSPPEESEEDLLDAAGLEGNSRLSCQCRV 87 (102)
T ss_pred EEeccCCcHHH-HHHHHCCCccee------cCCC-CccCccEEEEecCcccCCCcchHHHHHHHhhccCCCcEEeeeeEE
Confidence 34566699999 999999999998 6996 599999999999976778889999999994 2678999999999
Q ss_pred c
Q 029369 155 G 155 (194)
Q Consensus 155 ~ 155 (194)
.
T Consensus 88 ~ 88 (102)
T COG0633 88 K 88 (102)
T ss_pred C
Confidence 6
No 6
>CHL00134 petF ferredoxin; Validated
Probab=99.66 E-value=4.5e-16 Score=117.52 Aligned_cols=78 Identities=17% Similarity=0.270 Sum_probs=64.7
Q ss_pred EEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHHHhccCC--CCCCeEEeeeeE
Q 029369 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKK--KPESWRLACQTI 153 (194)
Q Consensus 76 ~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~--~~~g~RLaCQ~~ 153 (194)
+.+.+++|+||| ++|+++||++++ .|+ .|.||+|+++|++|...... ...|+. .++||+|+||++
T Consensus 17 ~~~~~~~~~tLL-~a~~~~Gi~i~~------~C~-~G~Cg~C~v~v~~G~v~~~~-----~~~l~~~e~~~g~~L~C~~~ 83 (99)
T CHL00134 17 VTIDCPDDVYIL-DAAEEQGIDLPY------SCR-AGACSTCAGKVTEGTVDQSD-----QSFLDDDQLEAGFVLTCVAY 83 (99)
T ss_pred EEEEECCCCcHH-HHHHHcCCCCCc------CCC-CccCCCCEEEEEeCccccCc-----ccCCCHHHHhCCeEEEeeCE
Confidence 468999999999 999999999998 699 99999999999999864311 123554 378999999999
Q ss_pred eccccCCccEEEEecchh
Q 029369 154 VGNKENSGKVCSRTMFLL 171 (194)
Q Consensus 154 v~~~e~~gdv~i~~~~~~ 171 (194)
+. +|++|+.+...
T Consensus 84 ~~-----~d~~i~~~~~~ 96 (99)
T CHL00134 84 PT-----SDCTILTHQEE 96 (99)
T ss_pred EC-----CCeEEEecccc
Confidence 85 99999877653
No 7
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=99.64 E-value=8.5e-16 Score=115.30 Aligned_cols=77 Identities=18% Similarity=0.328 Sum_probs=63.7
Q ss_pred EEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHHHhccCC--CCCCeEEeeeeE
Q 029369 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKK--KPESWRLACQTI 153 (194)
Q Consensus 76 ~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~--~~~g~RLaCQ~~ 153 (194)
+++.+++|++|| ++++++||++++ .|+ +|.||+|+++|++|...+.. ...|+. ..+||+|+||+.
T Consensus 15 ~~~~~~~g~tLL-da~~~~Gi~i~~------~C~-~G~Cg~C~v~v~~G~~~~~~-----~~~l~~~~~~~g~~LaC~~~ 81 (97)
T TIGR02008 15 ETIECPDDQYIL-DAAEEAGIDLPY------SCR-AGACSTCAGKVEEGTVDQSD-----QSFLDDDQMEAGYVLTCVAY 81 (97)
T ss_pred EEEEECCCCcHH-HHHHHcCCCCCc------CCC-CccCCCCceEEEeCcEecCc-----cCCCCHHHHhCCeEEEeeCE
Confidence 567899999999 999999999998 699 89999999999999865321 123544 368999999999
Q ss_pred eccccCCccEEEEecch
Q 029369 154 VGNKENSGKVCSRTMFL 170 (194)
Q Consensus 154 v~~~e~~gdv~i~~~~~ 170 (194)
+. +|++|+.+..
T Consensus 82 ~~-----~di~v~~~~~ 93 (97)
T TIGR02008 82 PT-----SDCTIETHKE 93 (97)
T ss_pred EC-----CCeEEEeccc
Confidence 85 8999987654
No 8
>PLN03136 Ferredoxin; Provisional
Probab=99.62 E-value=1.9e-15 Score=122.43 Aligned_cols=95 Identities=20% Similarity=0.388 Sum_probs=75.9
Q ss_pred CCCcEEEEEecCCCCCCCCccEEEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCCh
Q 029369 54 EKPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTN 133 (194)
Q Consensus 54 ~~~~I~v~f~~~~~~~dg~~~v~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~ 133 (194)
.|..++|+|..+. + .+++++++|++|| ++++++||++++ .|+ .|.||+|+++|++|.+...
T Consensus 51 ~m~~~~V~l~~~~----~---~~~~~~~~g~tIL-dAa~~~Gi~lp~------sCr-~G~CGtC~~~l~~G~V~~~---- 111 (148)
T PLN03136 51 AMATYKVKFITPE----G---EQEVECEEDVYVL-DAAEEAGIDLPY------SCR-AGSCSSCAGKVVSGSIDQS---- 111 (148)
T ss_pred eeeeEEEEEecCC----C---cEEEEeCCCCcHH-HHHHHcCCCCCc------CCC-CccCCCCEEEEecCcCccC----
Confidence 3456778786542 2 1467899999999 999999999998 699 9999999999999996432
Q ss_pred HHHhccCCC--CCCeEEeeeeEeccccCCccEEEEecchhhH
Q 029369 134 TELRYLKKK--PESWRLACQTIVGNKENSGKVCSRTMFLLNL 173 (194)
Q Consensus 134 ~E~~~L~~~--~~g~RLaCQ~~v~~~e~~gdv~i~~~~~~~~ 173 (194)
+...|++. ++||+|+||+++. +|++|+.+.+.++
T Consensus 112 -~~~~L~~~e~~~G~~LaC~a~p~-----sD~~Ie~~~e~~l 147 (148)
T PLN03136 112 -DQSFLDDEQISEGYVLTCVAYPT-----SDVVIETHKEEAI 147 (148)
T ss_pred -cccCCCHHHhcCCEEEEeEeEEC-----CCcEEecCChhhc
Confidence 23446653 7899999999986 8999998877654
No 9
>PTZ00038 ferredoxin; Provisional
Probab=99.60 E-value=6.2e-15 Score=123.86 Aligned_cols=79 Identities=22% Similarity=0.363 Sum_probs=66.8
Q ss_pred EEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHHHhccCCC--CCCeEEeeeeE
Q 029369 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQTI 153 (194)
Q Consensus 76 ~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~--~~g~RLaCQ~~ 153 (194)
+++++++|++|| ++|+++||++++ .|+ .|.||+|+++|.+|.+.. .|...|++. ++||+|+||++
T Consensus 107 ~~~~v~~geTIL-dAae~aGI~lp~------sCr-~G~CGtCkvrV~~GeV~~-----~e~~~Ls~ee~~~G~~LaCqa~ 173 (191)
T PTZ00038 107 KVIECDEDEYIL-DAAERQGVELPY------SCR-GGSCSTCAAKLLEGEVDN-----EDQSYLDDEQLKKGYCLLCTCY 173 (191)
T ss_pred EEEEeCCCCcHH-HHHHHcCCCCCc------CCC-CccCCCCEeEEeeccccc-----CccccCCHHHhcCCEEEEeeCE
Confidence 467899999999 999999999998 699 599999999999998643 234456653 78999999999
Q ss_pred eccccCCccEEEEecchhh
Q 029369 154 VGNKENSGKVCSRTMFLLN 172 (194)
Q Consensus 154 v~~~e~~gdv~i~~~~~~~ 172 (194)
+. +|++|+.+.+.+
T Consensus 174 p~-----sDi~Ie~p~e~~ 187 (191)
T PTZ00038 174 PK-----SDCTIETHKEDE 187 (191)
T ss_pred EC-----CCeEEecCChHH
Confidence 85 899999887765
No 10
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=99.59 E-value=7.1e-15 Score=107.75 Aligned_cols=71 Identities=17% Similarity=0.280 Sum_probs=57.3
Q ss_pred EEEecC-CchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHHHhccCCCCCCeEEeeeeEec
Q 029369 77 RAKAIS-GEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVG 155 (194)
Q Consensus 77 ~v~v~~-G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLaCQ~~v~ 155 (194)
++.+.+ |+||| +||+++|+++++ +|+ .|.||+|++++++|.+...... ..+.++|++|+||+++.
T Consensus 12 ~~~~~~~~~tlL-~a~~~~gi~~p~------~Cr-~G~Cg~C~~~~~sG~v~~~~~~------~~~~~~g~~L~C~~~p~ 77 (84)
T PRK10713 12 QLLCQDEHPSLL-AALESHNVAVEY------QCR-EGYCGSCRTRLVAGQVDWIAEP------LAFIQPGEILPCCCRAK 77 (84)
T ss_pred EEEecCCCCcHH-HHHHHcCCCCCC------CCC-CeECCCCEeEEEeCeEecCCCc------cchhhCCEEEEeeCEEC
Confidence 467775 59999 999999999998 699 9999999999999986542211 12346789999999996
Q ss_pred cccCCccEEEE
Q 029369 156 NKENSGKVCSR 166 (194)
Q Consensus 156 ~~e~~gdv~i~ 166 (194)
+|++|+
T Consensus 78 -----sd~~ie 83 (84)
T PRK10713 78 -----GDIEIE 83 (84)
T ss_pred -----CCEEEe
Confidence 888775
No 11
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.57 E-value=3.7e-15 Score=135.95 Aligned_cols=93 Identities=31% Similarity=0.550 Sum_probs=74.0
Q ss_pred CCCCcEEEEEecCCCCCCCCccEEEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCC
Q 029369 53 PEKPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERT 132 (194)
Q Consensus 53 ~~~~~I~v~f~~~~~~~dg~~~v~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t 132 (194)
.+..+++|++.+.. .+++++++|+||| ++++++|+++++ .|+|+|.||+|+|+|.+|...+.
T Consensus 31 ~~~~~~~i~~~~~~--------~~~~~~~~g~tLL-~a~~~~gi~i~~------~C~g~G~CgtC~v~v~~G~~~~~--- 92 (409)
T PRK05464 31 VPSGDVTIKINGDP--------EKTITVPAGGKLL-GALASNGIFLSS------ACGGGGSCGQCRVKVKEGGGDIL--- 92 (409)
T ss_pred ccCccEEEEEcCCC--------cEEEEECCCchHH-HHHHHcCCCccc------CCCCccEeCCCEEEEecCCcCCC---
Confidence 34568888874310 1467899999999 999999999998 69988999999999999986443
Q ss_pred hHHHhccCCC--CCCeEEeeeeEeccccCCccEEEEec
Q 029369 133 NTELRYLKKK--PESWRLACQTIVGNKENSGKVCSRTM 168 (194)
Q Consensus 133 ~~E~~~L~~~--~~g~RLaCQ~~v~~~e~~gdv~i~~~ 168 (194)
..|...|+.. +++|||+||+.+. +|++|+..
T Consensus 93 ~~e~~~l~~~e~~~g~rLaCq~~~~-----~d~~ie~~ 125 (409)
T PRK05464 93 PTELSHISKREAKEGWRLSCQVKVK-----QDMKIEVP 125 (409)
T ss_pred hhhhhhcCHhhccCCcEEEeeCEEC-----CCEEEEEC
Confidence 3566777753 7899999999985 67777765
No 12
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.56 E-value=1.5e-14 Score=131.84 Aligned_cols=91 Identities=32% Similarity=0.609 Sum_probs=72.2
Q ss_pred CCcEEEEEecCCCCCCCCccEEEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChH
Q 029369 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNT 134 (194)
Q Consensus 55 ~~~I~v~f~~~~~~~dg~~~v~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~ 134 (194)
+.+|+|++.+ ++ .+++.+++|+||| ++++++|+++++ .|+|.|.||+|+|+|.+|...+ +..
T Consensus 29 ~~~v~v~~~~------~~--~~~~~~~~g~tlL-~a~~~~gi~i~~------~C~g~G~Cg~C~v~v~~G~~~~---~~~ 90 (405)
T TIGR01941 29 SGDITIGIND------DE--EKSITVPAGGKLL-NTLASNGIFISS------ACGGGGTCGQCRVRVVEGGGEI---LPT 90 (405)
T ss_pred cccEEEEEcC------CC--ceEEEECCCChHH-HHHHHcCCCCcc------cCCCccEeCCCEEEEccCCcCC---Chh
Confidence 3457766533 21 1568899999999 999999999998 6998899999999999998643 345
Q ss_pred HHhccCCC--CCCeEEeeeeEeccccCCccEEEEec
Q 029369 135 ELRYLKKK--PESWRLACQTIVGNKENSGKVCSRTM 168 (194)
Q Consensus 135 E~~~L~~~--~~g~RLaCQ~~v~~~e~~gdv~i~~~ 168 (194)
|...|+.. ++|+||+||+.+. +|++|+.+
T Consensus 91 ~~~~L~~~~~~~g~rLaCq~~~~-----~d~~i~~~ 121 (405)
T TIGR01941 91 ELSHFSKREAKEGWRLSCQVKVK-----QDMSIEIP 121 (405)
T ss_pred hhhhcCHhHhcCCcEEEeeCEEC-----CCEEEEEC
Confidence 66777763 7899999999985 77888765
No 13
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=99.48 E-value=6.2e-14 Score=100.03 Aligned_cols=72 Identities=29% Similarity=0.536 Sum_probs=58.1
Q ss_pred EEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHHHhccCC--CCCCeEEeeeeE
Q 029369 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKK--KPESWRLACQTI 153 (194)
Q Consensus 76 ~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~--~~~g~RLaCQ~~ 153 (194)
.++.+++|++|| ++++++|+++++ .|+ .|.||+|+|+|.+|.+.+.++ ..+.. ..+++||+||+.
T Consensus 10 ~~~~~~~g~~ll-~al~~~g~~~~~------~C~-~g~Cg~C~v~v~~G~~~~~~~-----~~~~~~~~~~~~~LaC~~~ 76 (84)
T cd00207 10 VEVEVPEGETLL-DAAREAGIDIPY------SCR-AGACGTCKVEVVEGEVDQSDP-----SLLDEEEAEGGYVLACQTR 76 (84)
T ss_pred EEEEECCCCcHH-HHHHHcCCCccc------CCC-CcCCcCCEEEEeeCccccCcc-----cCCCHHHHhCCeEEEEeCe
Confidence 467899999999 999999999987 699 589999999999999765432 22222 268999999999
Q ss_pred eccccCCccEEE
Q 029369 154 VGNKENSGKVCS 165 (194)
Q Consensus 154 v~~~e~~gdv~i 165 (194)
+. +|++|
T Consensus 77 ~~-----~~i~v 83 (84)
T cd00207 77 VT-----DGLVI 83 (84)
T ss_pred eC-----CCcEE
Confidence 85 66665
No 14
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.46 E-value=1.6e-13 Score=121.31 Aligned_cols=81 Identities=19% Similarity=0.297 Sum_probs=66.5
Q ss_pred EEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHHHhccCC--CCCCeEEeeeeE
Q 029369 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKK--KPESWRLACQTI 153 (194)
Q Consensus 76 ~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~--~~~g~RLaCQ~~ 153 (194)
+++.+++|+||| ++++++||++++ .|+ .|.||+|+|++.+|.+.... .+...|++ ..+|++|+||++
T Consensus 12 ~~~~~~~g~tlL-~a~~~~gi~~~~------~C~-~G~Cg~C~~~~~~G~~~~~~---~~~~~l~~~~~~~g~~L~C~~~ 80 (339)
T PRK07609 12 RQFTAEPDETIL-DAALRQGIHLPY------GCK-NGACGSCKGRLLEGEVEQGP---HQASALSGEERAAGEALTCCAK 80 (339)
T ss_pred eEEEeCCCCcHH-HHHHHcCCCCCC------CCC-CeECCCCEEEEEECcEeccc---ccccCCCHHHHhCCcEEEeeCE
Confidence 467899999999 999999999998 698 99999999999999965432 23455655 368999999999
Q ss_pred eccccCCccEEEEecchhh
Q 029369 154 VGNKENSGKVCSRTMFLLN 172 (194)
Q Consensus 154 v~~~e~~gdv~i~~~~~~~ 172 (194)
+. +|++|+.+...+
T Consensus 81 ~~-----~d~~i~~~~~~~ 94 (339)
T PRK07609 81 PL-----SDLVLEAREVPA 94 (339)
T ss_pred EC-----CCEEEEeccccc
Confidence 96 899998776555
No 15
>PRK05713 hypothetical protein; Provisional
Probab=99.43 E-value=1.8e-13 Score=120.50 Aligned_cols=75 Identities=27% Similarity=0.503 Sum_probs=62.1
Q ss_pred EEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHHHhccCC--CCCCeEEeeeeE
Q 029369 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKK--KPESWRLACQTI 153 (194)
Q Consensus 76 ~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~--~~~g~RLaCQ~~ 153 (194)
+++++++|+||| ++++++||.+++ .|+ .|.||+|+|+|++|.... .....|++ .++|+||+||+.
T Consensus 9 ~~~~~~~g~tlL-~a~~~~gi~~~~------~C~-~G~Cg~C~~~~~~G~~~~-----~~~~~l~~~~~~~g~~L~C~~~ 75 (312)
T PRK05713 9 RRWSVPAGSNLL-DALNAAGVAVPY------SCR-AGSCHACLVRCLQGEPED-----ALPEALAAEKREQGWRLACQCR 75 (312)
T ss_pred eEEEECCCCcHH-HHHHHcCCCCCc------CCC-CcCCCCCeEEEEeCcccc-----CccccCCHHHHhCCeEEEeECE
Confidence 467899999999 999999999998 699 799999999999998531 11234544 368999999999
Q ss_pred eccccCCccEEEEec
Q 029369 154 VGNKENSGKVCSRTM 168 (194)
Q Consensus 154 v~~~e~~gdv~i~~~ 168 (194)
+. +|++|+.+
T Consensus 76 ~~-----~d~~i~~~ 85 (312)
T PRK05713 76 VV-----GDLRVEVF 85 (312)
T ss_pred EC-----CceEEEec
Confidence 96 88999865
No 16
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.43 E-value=4.2e-13 Score=119.69 Aligned_cols=79 Identities=28% Similarity=0.263 Sum_probs=63.7
Q ss_pred EEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHHHhccCC--CCCCeEEeeeeE
Q 029369 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKK--KPESWRLACQTI 153 (194)
Q Consensus 76 ~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~--~~~g~RLaCQ~~ 153 (194)
.++.+.+|+||| ++++++|+.+++ +|+ .|.||+|++++++|.+.... .+...|+. .+++++|+||++
T Consensus 15 ~~~~~~~g~tlL-~a~~~~g~~~p~------~C~-~G~Cg~C~~~~~~G~~~~~~---~~~~~l~~~~~~~g~~L~C~~~ 83 (340)
T PRK11872 15 LFFPVGKDELLL-DAALRNGINLPL------DCR-EGVCGTCQGRCESGIYSQDY---VDEDALSERDLAQRKMLACQTR 83 (340)
T ss_pred EEEEeCCCCcHH-HHHHHcCCCCcC------CCC-CeECCCCEEEEEeCccccCc---cccccCCHHHHhCCeEEEeeCE
Confidence 346789999999 999999999998 699 89999999999999964322 23344654 378999999999
Q ss_pred eccccCCccEEEEecch
Q 029369 154 VGNKENSGKVCSRTMFL 170 (194)
Q Consensus 154 v~~~e~~gdv~i~~~~~ 170 (194)
+. +|++|+.++.
T Consensus 84 ~~-----~d~~i~~~~~ 95 (340)
T PRK11872 84 VK-----SDAAFYFDFD 95 (340)
T ss_pred EC-----CceEEEecCc
Confidence 86 8888875543
No 17
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=99.40 E-value=3e-13 Score=96.04 Aligned_cols=69 Identities=38% Similarity=0.610 Sum_probs=50.5
Q ss_pred EEEEecCCch-HHHHHHHHC-CCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHHHhccCCCCCCeEEeeeeE
Q 029369 76 ERAKAISGEK-LLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTI 153 (194)
Q Consensus 76 ~~v~v~~G~t-LLr~aa~~~-GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLaCQ~~ 153 (194)
+++++++|++ || ++|+++ |+++++ .|+|.+ ||+|+|+|.+|++ .......|.+.+. ..+.||+||++
T Consensus 8 ~~~~~~~~~~~ll-~~~~~~~gi~i~~------~C~~g~-Cg~C~v~v~~G~~-~~~~~~~~~~~~~--~~~~rLaCq~~ 76 (78)
T PF00111_consen 8 VTVEVPPGETLLL-DALERAGGIGIPY------SCGGGG-CGTCRVRVLEGEV-QSNETFLEDEELA--EGGIRLACQTR 76 (78)
T ss_dssp EEEEEETTSBBHH-HHHHHTTTTTSTT------SSSSSS-SSTTEEEEEESEE-ETTTSSSHHHHHH--TTEEEEGGGSE
T ss_pred EEEEeCCCccHHH-HHHHHcCCCCccc------CCCCCc-cCCcEEEEeeCcc-cCCcccCCHHHHH--cCCCcCCcEEE
Confidence 5788999999 99 999999 999997 699655 9999999999986 2111111222221 23458999998
Q ss_pred ec
Q 029369 154 VG 155 (194)
Q Consensus 154 v~ 155 (194)
++
T Consensus 77 ~t 78 (78)
T PF00111_consen 77 VT 78 (78)
T ss_dssp ES
T ss_pred eC
Confidence 73
No 18
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.39 E-value=1e-12 Score=116.44 Aligned_cols=72 Identities=25% Similarity=0.478 Sum_probs=59.8
Q ss_pred EEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHHHhccCCC--CCCeEEeeeeE
Q 029369 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQTI 153 (194)
Q Consensus 76 ~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~--~~g~RLaCQ~~ 153 (194)
+++.+++|+||| ++|+++|+++++ .|+ .|.||+|++++++|.+... ....|++. ++|++|+||++
T Consensus 258 ~~~~~~~~~~lL-~~~~~~gi~~~~------~C~-~G~Cg~C~~~~~~G~v~~~-----~~~~l~~~~~~~g~~l~C~~~ 324 (332)
T PRK10684 258 REFYAPVGTTLL-EALESNKVPVVA------ACR-AGVCGCCKTKVVSGEYTVS-----STMTLTPAEIAQGYVLACSCH 324 (332)
T ss_pred EEEEeCCCChHH-HHHHHcCCCccC------CCC-CcCCCCCEEEEecCccccc-----ccccCCHHHHhCCcEEEeeCE
Confidence 467889999999 999999999998 699 9999999999999997532 12345543 78999999999
Q ss_pred eccccCCccEEE
Q 029369 154 VGNKENSGKVCS 165 (194)
Q Consensus 154 v~~~e~~gdv~i 165 (194)
+. +|++|
T Consensus 325 ~~-----~d~~i 331 (332)
T PRK10684 325 PQ-----GDLVL 331 (332)
T ss_pred EC-----CCeEE
Confidence 86 77776
No 19
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.37 E-value=8.6e-13 Score=117.71 Aligned_cols=77 Identities=35% Similarity=0.647 Sum_probs=62.9
Q ss_pred EEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHHHhccCCC--CCCeEEeeeeE
Q 029369 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQTI 153 (194)
Q Consensus 76 ~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~--~~g~RLaCQ~~ 153 (194)
.++++++|.+|| .+|..+||.+++ .|||.|.||+|+|+|.+|.... -+.|...++.+ .+||||+||+.
T Consensus 47 ~~~t~~aG~kLL-~~L~~~gifi~S------aCGGggsC~QCkv~v~~ggge~---LpTe~sh~skrea~eG~RLsCQ~~ 116 (410)
T COG2871 47 KTKTVPAGGKLL-GALASSGIFISS------ACGGGGSCGQCKVRVKKGGGEI---LPTELSHISKREAKEGWRLSCQVN 116 (410)
T ss_pred hceecCCchhHH-HHHHhCCccccc------CCCCCccccccEEEEecCCCcc---CcchhhhhhhhhhhccceEEEEec
Confidence 467899999999 999999999999 5999999999999999987422 23566777663 79999999999
Q ss_pred eccccCCccEEEEe
Q 029369 154 VGNKENSGKVCSRT 167 (194)
Q Consensus 154 v~~~e~~gdv~i~~ 167 (194)
+. .|+.++.
T Consensus 117 Vk-----~dm~lev 125 (410)
T COG2871 117 VK-----HDMDLEV 125 (410)
T ss_pred cc-----ccceeec
Confidence 96 5555543
No 20
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.33 E-value=4.1e-12 Score=112.95 Aligned_cols=72 Identities=26% Similarity=0.466 Sum_probs=58.1
Q ss_pred EEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHHHhccCCC--CCCeEEeeeeEec
Q 029369 78 AKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQTIVG 155 (194)
Q Consensus 78 v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~--~~g~RLaCQ~~v~ 155 (194)
+.+++|+||| ++|+++||++++ +|+ .|.||+|++++++|.+.+. +...|+.. ++|++|+||+++.
T Consensus 277 ~~~~~~~slL-~~~~~~gi~~~~------~C~-~G~Cg~C~~~~~~G~v~~~-----~~~~l~~~~~~~g~~l~C~~~~~ 343 (352)
T TIGR02160 277 SSLSRDESVL-DAALRARPDLPF------ACK-GGVCGTCRAKVLEGKVDME-----RNYALEPDEVDAGYVLTCQAYPL 343 (352)
T ss_pred EecCCCCcHH-HHHHHcCCCCcC------CCC-CccCCCCEEEEeccccccc-----cccCCCHHHHhCCcEEEeeEEEC
Confidence 5688999999 999999999998 699 7999999999999997542 22345543 6899999999996
Q ss_pred cccCCccEEEE
Q 029369 156 NKENSGKVCSR 166 (194)
Q Consensus 156 ~~e~~gdv~i~ 166 (194)
..+|+|+
T Consensus 344 ----~~~~~~~ 350 (352)
T TIGR02160 344 ----SDKLVVD 350 (352)
T ss_pred ----CCcEEEe
Confidence 2346664
No 21
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=99.29 E-value=4.8e-12 Score=119.00 Aligned_cols=81 Identities=28% Similarity=0.496 Sum_probs=68.3
Q ss_pred cCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHHHhccCCCCCCeEEeeeeEeccccCC
Q 029369 81 ISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENS 160 (194)
Q Consensus 81 ~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLaCQ~~v~~~e~~ 160 (194)
+.|++|| +++++.|+.+.+ .|||+|.||.|.|.|.+|...+...+++| .++.. .||||+||+.+.
T Consensus 15 ~~g~~il-~aar~~gv~i~s------~cggk~~cgkc~v~v~~g~~~i~s~~dh~-k~~~~--~g~rlac~~~v~----- 79 (614)
T COG3894 15 DEGTTIL-DAARRLGVYIRS------VCGGKGTCGKCQVVVQEGNHKIVSSTDHE-KYLRE--RGYRLACQAQVL----- 79 (614)
T ss_pred CCCchHH-HHHHhhCceEee------ecCCCccccceEEEEEeCCceeccchhHH-HHHHh--hceeeeeehhhc-----
Confidence 5899999 999999999998 79999999999999999986665556664 34433 499999999985
Q ss_pred ccEEEEecchhhHHHH
Q 029369 161 GKVCSRTMFLLNLLAF 176 (194)
Q Consensus 161 gdv~i~~~~~~~~~~~ 176 (194)
||++|..|++..+.+.
T Consensus 80 gd~~i~ip~es~l~~q 95 (614)
T COG3894 80 GDLVIFIPPESRLERQ 95 (614)
T ss_pred CceEEEcCchhhHHHH
Confidence 9999999988777654
No 22
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=99.13 E-value=7.8e-11 Score=91.29 Aligned_cols=92 Identities=21% Similarity=0.308 Sum_probs=66.0
Q ss_pred cEEEEEecCCCC-CCCCccEEEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHH
Q 029369 57 EIELEFIAPRAG-DDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTE 135 (194)
Q Consensus 57 ~I~v~f~~~~~~-~dg~~~v~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E 135 (194)
+++|..++++.. ....|..+++++.+++|+| ++|....-.+..++.++++|+ .|.||+|.++|. |.
T Consensus 1 t~~I~R~~~~~~~~~~~~~~y~v~~~~~~tVL-d~L~~Ik~~~D~sLafr~sCr-~giCGsCam~IN-G~---------- 67 (110)
T PF13085_consen 1 TLRIFRFDPESDEGEPYYQEYEVPVEPGMTVL-DALNYIKEEQDPSLAFRYSCR-SGICGSCAMRIN-GR---------- 67 (110)
T ss_dssp EEEEEE--TTSTTSS-EEEEEEEEGGSTSBHH-HHHHHHHHHT-TT--B--SSS-SSSSSTTEEEET-TE----------
T ss_pred CEEEEEcCCCCCCCCCeEEEEEecCCCCCcHH-HHHHHHHhccCCCeEEEecCC-CCCCCCCEEEEC-Cc----------
Confidence 467777777432 2456777899999999999 999887777778888899999 899999999995 66
Q ss_pred HhccCCCCCCeEEeeeeEeccccCCc---cEEEEecchhh
Q 029369 136 LRYLKKKPESWRLACQTIVGNKENSG---KVCSRTMFLLN 172 (194)
Q Consensus 136 ~~~L~~~~~g~RLaCQ~~v~~~e~~g---dv~i~~~~~~~ 172 (194)
.+|||++.+. +..+. .|+|+|+..+.
T Consensus 68 ----------~~LAC~t~v~-~~~~~~~~~i~IePL~~fp 96 (110)
T PF13085_consen 68 ----------PRLACKTQVD-DLIEKFGNVITIEPLPNFP 96 (110)
T ss_dssp ----------EEEGGGSBGG-GCTTSETBEEEEEESTTSB
T ss_pred ----------eecceeeEch-hccCCCcceEEEEECCCCC
Confidence 4899999986 33322 39999986543
No 23
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=99.02 E-value=5.1e-10 Score=98.88 Aligned_cols=90 Identities=21% Similarity=0.358 Sum_probs=67.2
Q ss_pred EEEEEecCCCCCCCCccEEEEEecC-CchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHHH
Q 029369 58 IELEFIAPRAGDDGSYPVERAKAIS-GEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTEL 136 (194)
Q Consensus 58 I~v~f~~~~~~~dg~~~v~~v~v~~-G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~ 136 (194)
|+|..++|..+....|..++|++.+ |+|+| ++|....-....++.++++|+ .|.||+|.+.|. |.
T Consensus 46 ~~i~R~~p~~~~~~~~~~y~v~~~~~~~tVL-d~L~~Ik~~~D~sLsfr~sCr-~giCGsCam~IN-G~----------- 111 (276)
T PLN00129 46 FQIYRWNPDNPGKPHLQSYKVDLNDCGPMVL-DVLIKIKNEQDPSLTFRRSCR-EGICGSCAMNID-GK----------- 111 (276)
T ss_pred EEEEeeCCCCCCCceeEEEEeCCCCCCchHH-HHHHHHHHcCCCCeEEeccCC-CCCCCCCeeEEC-Cc-----------
Confidence 4445555543333456666777665 89999 999886666777788899999 899999999995 66
Q ss_pred hccCCCCCCeEEeeeeEeccccCCccEEEEecchh
Q 029369 137 RYLKKKPESWRLACQTIVGNKENSGKVCSRTMFLL 171 (194)
Q Consensus 137 ~~L~~~~~g~RLaCQ~~v~~~e~~gdv~i~~~~~~ 171 (194)
.+|||++.+. +..++.|+|+|+..+
T Consensus 112 ---------p~LAC~t~v~-~~~~~~i~iePl~~f 136 (276)
T PLN00129 112 ---------NTLACLTKID-RDESGPTTITPLPHM 136 (276)
T ss_pred ---------ccccccccHh-hcCCCcEEEEECCCC
Confidence 4899999986 333468999998654
No 24
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=98.93 E-value=1.4e-09 Score=93.95 Aligned_cols=90 Identities=19% Similarity=0.316 Sum_probs=69.4
Q ss_pred EEEEEecCCC-CCCCCccEEEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHHH
Q 029369 58 IELEFIAPRA-GDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTEL 136 (194)
Q Consensus 58 I~v~f~~~~~-~~dg~~~v~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~ 136 (194)
|+|..++|.. .....|..++|++.+++|+| +||....-.+..+++++++|+ .|.||+|.+.|. |.
T Consensus 7 ~~i~R~~p~~~~~~~~~~~y~v~~~~~~tvL-daL~~Ik~~~D~sL~fr~sCr-~giCGsCam~IN-G~----------- 72 (239)
T PRK13552 7 FNIFRYNPQDPGSKPHMVTYQLEETPGMTLF-IALNRIREEQDPSLQFDFVCR-AGICGSCAMVIN-GR----------- 72 (239)
T ss_pred EEEEeeCCCCCCCCcceEEEEecCCCCCCHH-HHHHHHHhcCCCCeeEeccCC-CCCCCCceeEEC-Ce-----------
Confidence 4555555532 22345777789999999999 999888777778888999999 999999999995 66
Q ss_pred hccCCCCCCeEEeeeeEeccccCCccEEEEecchh
Q 029369 137 RYLKKKPESWRLACQTIVGNKENSGKVCSRTMFLL 171 (194)
Q Consensus 137 ~~L~~~~~g~RLaCQ~~v~~~e~~gdv~i~~~~~~ 171 (194)
.+|||++.+. +-.++.|+|+|+..+
T Consensus 73 ---------~~LAC~t~v~-~~~~~~i~iePl~~f 97 (239)
T PRK13552 73 ---------PTLACRTLTS-DYPDGVITLMPLPVF 97 (239)
T ss_pred ---------EhhhhhccHh-hcCCCcEEEEECCCC
Confidence 4899999985 222358999998654
No 25
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=98.79 E-value=7.3e-09 Score=89.69 Aligned_cols=90 Identities=23% Similarity=0.352 Sum_probs=71.2
Q ss_pred cEEEEEecCCCCCCCCccEEEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHHH
Q 029369 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTEL 136 (194)
Q Consensus 57 ~I~v~f~~~~~~~dg~~~v~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~ 136 (194)
+++|..++++.+ .+.+..++|+..+|+++| ++|....-.+..++.++.+|+ .|.||+|.+.|. |.
T Consensus 4 ~~~i~R~~p~~~-~p~~~~yev~~~~~~~vL-daL~~Ik~e~d~~Lsfr~sCR-~gICGSCam~IN-G~----------- 68 (234)
T COG0479 4 KFKIYRYNPDDD-KPYWQTYEVPYDEGMTVL-DALLYIKEEQDPTLSFRRSCR-EGICGSCAMNIN-GK----------- 68 (234)
T ss_pred EEEEEEECCCCC-CcceEEEEecCCCCCcHH-HHHHHHHHhcCCccchhhhcc-CCcCCcceeEEC-Cc-----------
Confidence 466667776543 456666788888999999 999887777788889999999 899999999985 66
Q ss_pred hccCCCCCCeEEeeeeEeccccCCccEEEEecchh
Q 029369 137 RYLKKKPESWRLACQTIVGNKENSGKVCSRTMFLL 171 (194)
Q Consensus 137 ~~L~~~~~g~RLaCQ~~v~~~e~~gdv~i~~~~~~ 171 (194)
.||||++.+. +-.++.|+|+|+..+
T Consensus 69 ---------prLAC~t~~~-~~~~~~i~iePL~~f 93 (234)
T COG0479 69 ---------PRLACKTLMK-DLEEGVITIEPLPNF 93 (234)
T ss_pred ---------cccchhchhh-hccCCceEEEECCCC
Confidence 4789999985 333346899998854
No 26
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.78 E-value=5.7e-09 Score=90.70 Aligned_cols=88 Identities=15% Similarity=0.203 Sum_probs=64.3
Q ss_pred EEEEEecCCCCCCCCccEEEEEecCCchHHHHHHHHCCCc-------cccccCcccCCCCceeccCcEEEEccCcccCCC
Q 029369 58 IELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIE-------LYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNE 130 (194)
Q Consensus 58 I~v~f~~~~~~~dg~~~v~~v~v~~G~tLLr~aa~~~GI~-------l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~ 130 (194)
++|..+++ .+..+.|..++|++.+++|+| ++|....-. ...++.++++|+ .|.||+|.+.|. |.
T Consensus 8 ~~i~R~~~-~~~~~~~q~y~v~~~~~~tvL-daL~~I~~~~~~~~g~~~~~l~fr~sCr-~giCGsCam~IN-G~----- 78 (249)
T PRK08640 8 LIIKRQDG-PDSKPYWEEFEIPYRPNMNVI-SALMEIRRNPVNAKGEKTTPVVWDMNCL-EEVCGACSMVIN-GK----- 78 (249)
T ss_pred EEEEeeCC-CCCCceeEEEEecCCCCCcHH-HHHHHHHhcccccccccCCCeeEecccC-CCCCCcCeeEEC-Cc-----
Confidence 44444554 223345777788899999999 999765432 122367788999 999999999995 66
Q ss_pred CChHHHhccCCCCCCeEEeeeeEeccccCCccEEEEecchh
Q 029369 131 RTNTELRYLKKKPESWRLACQTIVGNKENSGKVCSRTMFLL 171 (194)
Q Consensus 131 ~t~~E~~~L~~~~~g~RLaCQ~~v~~~e~~gdv~i~~~~~~ 171 (194)
.+|||++.+. ++.+.|+|+|+..+
T Consensus 79 ---------------p~LAC~t~v~--~~~~~i~iePl~~f 102 (249)
T PRK08640 79 ---------------PRQACTALID--QLEQPIRLEPMSTF 102 (249)
T ss_pred ---------------cchhhhChHH--HcCCcEEEEECCCC
Confidence 3789999984 56678999998654
No 27
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.78 E-value=6.9e-09 Score=89.62 Aligned_cols=89 Identities=19% Similarity=0.220 Sum_probs=66.2
Q ss_pred EEEEEecCCCCCCCCccEEEEEecC-CchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHHH
Q 029369 58 IELEFIAPRAGDDGSYPVERAKAIS-GEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTEL 136 (194)
Q Consensus 58 I~v~f~~~~~~~dg~~~v~~v~v~~-G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~ 136 (194)
++|..+++.....+.|..++|++.+ ++|+| ++|.... ....++.++++|+ .|.||+|.+.|. |.
T Consensus 7 ~~i~R~~~~~~~~~~~~~y~v~~~~~~~tvl-d~L~~ik-~~d~~l~fr~sCr-~giCGsCa~~iN-G~----------- 71 (235)
T PRK12575 7 LHIYRYDPDDDAAPRMQRYEIAPRAEDRMLL-DVLGRVK-AQDETLSYRRSCR-EGICGSDAMNIN-GR----------- 71 (235)
T ss_pred EEEEeeCCCCCCCceeEEEEecCCCCCCcHH-HHHHHHH-hcCCCeeeeccCC-CCCCCCCeeEEC-Ce-----------
Confidence 4454555543333456666777765 56999 9998876 6677788999999 899999999995 65
Q ss_pred hccCCCCCCeEEeeeeEeccccCCccEEEEecchhh
Q 029369 137 RYLKKKPESWRLACQTIVGNKENSGKVCSRTMFLLN 172 (194)
Q Consensus 137 ~~L~~~~~g~RLaCQ~~v~~~e~~gdv~i~~~~~~~ 172 (194)
.+|||++.+. ++.+.|+|+|+..+.
T Consensus 72 ---------~~LaC~t~~~--~~~~~i~iePl~~~p 96 (235)
T PRK12575 72 ---------NGLACLTNMQ--ALPREIVLRPLPGLP 96 (235)
T ss_pred ---------EcchhhCcHh--HcCCCEEEeECCCCC
Confidence 5899999985 455679999986543
No 28
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.74 E-value=7.4e-09 Score=89.64 Aligned_cols=93 Identities=17% Similarity=0.249 Sum_probs=67.4
Q ss_pred CCCcEEEEE--ecCCCCCCCCccEEEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCC
Q 029369 54 EKPEIELEF--IAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNER 131 (194)
Q Consensus 54 ~~~~I~v~f--~~~~~~~dg~~~v~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~ 131 (194)
++.+|+|.+ ++++.+..+.|..+++++.+|+||| ++|...+-.+..+++.+.+|+ .|.||+|.|.|. |.
T Consensus 3 ~~~~v~~~i~R~~~~~~~~~~~~~~~v~~~~~~tvl-~~L~~ik~~~d~~l~fr~~C~-~giCGsC~v~In-G~------ 73 (244)
T PRK12385 3 EMKNLKIEVLRYNPEVDTEPHSQTYEVPYDETTSLL-DALGYIKDNLAPDLSYRWSCR-MAICGSCGMMVN-NV------ 73 (244)
T ss_pred CCcEEEEEEEeeCCCCCCCceeEEEEeeCCCCCcHH-HHHHHHHHhcCCCceeccCCC-CCcCCCCcceEC-cc------
Confidence 345555554 4544322245667788888999999 999887666655567778999 899999999997 64
Q ss_pred ChHHHhccCCCCCCeEEeeeeEeccccCCccEEEEecchh
Q 029369 132 TNTELRYLKKKPESWRLACQTIVGNKENSGKVCSRTMFLL 171 (194)
Q Consensus 132 t~~E~~~L~~~~~g~RLaCQ~~v~~~e~~gdv~i~~~~~~ 171 (194)
.+|||++.+. +..+.++|+|+..+
T Consensus 74 --------------~~laC~t~~~--~~~~~~~iePl~~f 97 (244)
T PRK12385 74 --------------PKLACKTFLR--DYTGGMKVEALANF 97 (244)
T ss_pred --------------ChhhHhhHHH--HcCCCeEEeeCCCC
Confidence 3679999885 44566889888644
No 29
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=98.68 E-value=3.4e-08 Score=91.99 Aligned_cols=83 Identities=22% Similarity=0.354 Sum_probs=59.3
Q ss_pred EEEEEecCCCCCCCCccEEEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHHHh
Q 029369 58 IELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELR 137 (194)
Q Consensus 58 I~v~f~~~~~~~dg~~~v~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~ 137 (194)
++|..++++.+ ...|...++++++|+||| ++|.+.+.....++....+|+ .|.||+|.|.| +|.
T Consensus 6 ~~i~r~~~~~~-~~~~~~~~v~~~~~~tvl-~al~~~~~~~~~~l~~~~~C~-~g~Cg~C~v~v-~G~------------ 69 (486)
T PRK06259 6 ITVKRFDPEKD-EPHFESYEVPVKEGMTVL-DALEYINKTYDANIAFRSSCR-AGQCGSCAVTI-NGE------------ 69 (486)
T ss_pred EEEEecCCCCC-CceeEEEEEeCCCCChHH-HHHHHhchhcCCCceecCCCC-CCCCCCCEEEE-CCe------------
Confidence 34434454432 356777788888999999 999975544222333445798 89999999996 565
Q ss_pred ccCCCCCCeEEeeeeEeccccCCccEEEEecc
Q 029369 138 YLKKKPESWRLACQTIVGNKENSGKVCSRTMF 169 (194)
Q Consensus 138 ~L~~~~~g~RLaCQ~~v~~~e~~gdv~i~~~~ 169 (194)
.+|+||+.+. .+++|+++.
T Consensus 70 --------~~laC~~~~~-----~~~~i~~~~ 88 (486)
T PRK06259 70 --------PVLACKTEVE-----DGMIIEPLD 88 (486)
T ss_pred --------EecccccCCC-----CCCEEEecC
Confidence 4789999986 458998886
No 30
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.67 E-value=5.9e-08 Score=87.23 Aligned_cols=88 Identities=19% Similarity=0.263 Sum_probs=66.9
Q ss_pred EEEEEecCCCCCCCCccEEEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHHHh
Q 029369 58 IELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELR 137 (194)
Q Consensus 58 I~v~f~~~~~~~dg~~~v~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~ 137 (194)
++|..+++. ....|..++|++++|+||| ++|...++.++.++..+.+|+ .|.||+|.|+|. |.
T Consensus 5 ~~i~R~~~~--~~p~~~~~~v~~~~~~tvL-~~l~~i~~~~d~tL~~~~~c~-~~~Cg~C~v~in-G~------------ 67 (329)
T PRK12577 5 FKILRQKQN--SAPYVQTYTLEVEPGNTIL-DCLNRIKWEQDGSLAFRKNCR-NTICGSCAMRIN-GR------------ 67 (329)
T ss_pred EEEEeeCCC--CCCeEEEEEEECCCCChHH-HHHHHhCCcCCCCcEEcCCCC-CCCCCCCEEEEC-Ce------------
Confidence 444445442 2345666789999999999 999999999976666778899 799999999994 65
Q ss_pred ccCCCCCCeEEeeeeEeccccC----------CccEEEEecchh
Q 029369 138 YLKKKPESWRLACQTIVGNKEN----------SGKVCSRTMFLL 171 (194)
Q Consensus 138 ~L~~~~~g~RLaCQ~~v~~~e~----------~gdv~i~~~~~~ 171 (194)
.+|||++.+. +.+ .+.|+|+|+..+
T Consensus 68 --------~~laC~t~v~-~~~~~~~~~~~~~~~~i~iePl~~~ 102 (329)
T PRK12577 68 --------SALACKENVG-SELARLSDSNSGAIPEITIAPLGNM 102 (329)
T ss_pred --------eecCcccchh-hhhccccccccCCCCeEEEEECCCC
Confidence 4779999886 322 267899998654
No 31
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.65 E-value=9.7e-08 Score=84.24 Aligned_cols=89 Identities=20% Similarity=0.291 Sum_probs=65.2
Q ss_pred EEEEEecCCCCCCCCccEEEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHHHh
Q 029369 58 IELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELR 137 (194)
Q Consensus 58 I~v~f~~~~~~~dg~~~v~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~ 137 (194)
++|..++++ .+..|..+++++++|+||| ++|...+..+...+..+..|+ .|.||.|.|.| +|.
T Consensus 11 ~~i~R~~~~--~~~~~~~~~v~~~~~~tvL-d~L~~i~~~~d~tl~~~~~C~-~G~CgsC~v~I-NG~------------ 73 (279)
T PRK12576 11 FKVKRYDPE--KGSWWQEYKVKVDRFTQVT-EALRRIKEEQDPTLSYRASCH-MAVCGSCGMKI-NGE------------ 73 (279)
T ss_pred EEEEecCCC--CCCeEEEEEEecCCCCHHH-HHHHHhCCccCCCceecCCCC-CCCCCCCEEEE-CCc------------
Confidence 444444443 3456777889999999999 999999887654456678897 99999999999 465
Q ss_pred ccCCCCCCeEEeeeeEeccc--cCCccEEEEecchh
Q 029369 138 YLKKKPESWRLACQTIVGNK--ENSGKVCSRTMFLL 171 (194)
Q Consensus 138 ~L~~~~~g~RLaCQ~~v~~~--e~~gdv~i~~~~~~ 171 (194)
.+|||++.+..- +....++|+|+..+
T Consensus 74 --------~~laC~t~v~~~~~~~~~~~tiePl~~~ 101 (279)
T PRK12576 74 --------PRLACKTLVLDVAKKYNSVITIEPMDYF 101 (279)
T ss_pred --------EeccccCcHHHhhcCCCCcEEEEECCCC
Confidence 377999988511 11346889888643
No 32
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=98.64 E-value=1e-07 Score=81.63 Aligned_cols=72 Identities=29% Similarity=0.413 Sum_probs=54.9
Q ss_pred CCcEEEEEecCCCCCCCCccEEEEEecCCchHHHHHHHHCCCccccccCcccCCC-----CceeccCcEEEEccCcccCC
Q 029369 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEIIDGKDLLN 129 (194)
Q Consensus 55 ~~~I~v~f~~~~~~~dg~~~v~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~-----G~G~CGTC~V~V~~G~~~l~ 129 (194)
|..|+|++.+ +++.+++|+||| +|++++|+.+++ .|. +.|.|+.|.|+|. |..
T Consensus 1 m~~v~i~idg-----------~~~~~~~g~til-~a~~~~gi~ip~------~C~~~~~~~~G~C~~C~V~v~-g~~--- 58 (234)
T PRK07569 1 MSVKTLTIDD-----------QLVSAREGETLL-EAAREAGIPIPT------LCHLDGLSDVGACRLCLVEIE-GSN--- 58 (234)
T ss_pred CceEEEEECC-----------EEEEeCCCCHHH-HHHHHcCCCCCc------CcCCCCCCCCCccCCcEEEEC-CCC---
Confidence 4567777632 357899999999 999999999998 576 5899999999994 542
Q ss_pred CCChHHHhccCCCCCCeEEeeeeEeccccCCccEEEEe
Q 029369 130 ERTNTELRYLKKKPESWRLACQTIVGNKENSGKVCSRT 167 (194)
Q Consensus 130 ~~t~~E~~~L~~~~~g~RLaCQ~~v~~~e~~gdv~i~~ 167 (194)
+.+.||++.+. +|+.+..-
T Consensus 59 ---------------~~~~aC~t~v~----~Gm~v~t~ 77 (234)
T PRK07569 59 ---------------KLLPACVTPVA----EGMVVQTN 77 (234)
T ss_pred ---------------ccccCcCCCCC----CCCEEEEC
Confidence 24569999886 56555443
No 33
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.61 E-value=5.5e-08 Score=84.91 Aligned_cols=78 Identities=24% Similarity=0.403 Sum_probs=61.7
Q ss_pred CCccEEEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHHHhccCCCCCCeEEee
Q 029369 71 GSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLAC 150 (194)
Q Consensus 71 g~~~v~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLaC 150 (194)
+.|..+++++.++++|| ++|.+.+..+..+++.+++|+ .|.||+|.|.|. |. .+|||
T Consensus 17 ~~~q~y~v~~~~~~tvL-d~L~~i~~~~d~~l~~r~~C~-~g~CGsCa~~In-G~--------------------p~laC 73 (251)
T PRK12386 17 GELQDYTVEVNEGEVVL-DVIHRLQATQAPDLAVRWNCK-AGKCGSCSAEIN-GR--------------------PRLMC 73 (251)
T ss_pred CceEEEEEeCCCCCCHH-HHHHHhccccCCCCcccCCCC-CCcCCCCEEEEC-cc--------------------EeccH
Confidence 35777889999999999 999998877777778889999 999999999996 65 48899
Q ss_pred eeEeccccCCccEEEEecchh
Q 029369 151 QTIVGNKENSGKVCSRTMFLL 171 (194)
Q Consensus 151 Q~~v~~~e~~gdv~i~~~~~~ 171 (194)
++.+..-+-.+.++|+|+..+
T Consensus 74 ~t~~~~~~~~~~itiepl~~f 94 (251)
T PRK12386 74 MTRMSTFDEDETVTVTPMRTF 94 (251)
T ss_pred HhHHHHhCCCCeEEEccCCCC
Confidence 998741111246888888554
No 34
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.59 E-value=1.2e-07 Score=81.17 Aligned_cols=89 Identities=22% Similarity=0.317 Sum_probs=64.6
Q ss_pred cEEEEEecCCCCCCCCccEEEEEec-CCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHH
Q 029369 57 EIELEFIAPRAGDDGSYPVERAKAI-SGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTE 135 (194)
Q Consensus 57 ~I~v~f~~~~~~~dg~~~v~~v~v~-~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E 135 (194)
+|+|..++++.+....|+.++++++ +|+||| ++|.+.+-.....++.+..|+ .|.||+|.|.|. |.
T Consensus 1 ~~~v~r~~~~~~~~~~~~~~~v~~~~~~~tvl-~~L~~~~~~~~~~l~~~~~c~-~g~Cg~C~v~vn-G~---------- 67 (232)
T PRK05950 1 TFKIYRYNPDVDANPRMQTYEVDVDECGPMVL-DALIKIKNEIDPTLTFRRSCR-EGVCGSDAMNIN-GK---------- 67 (232)
T ss_pred CeEEEecCCCCCCCceeEEEEeCCCCCCCHHH-HHHHHhCCccCCcceeeCCCC-CCCCCCCEEEEC-Cc----------
Confidence 3677777765433456777889998 999999 999998833333345567897 899999999994 65
Q ss_pred HhccCCCCCCeEEeeeeEeccccC-CccEEEEecch
Q 029369 136 LRYLKKKPESWRLACQTIVGNKEN-SGKVCSRTMFL 170 (194)
Q Consensus 136 ~~~L~~~~~g~RLaCQ~~v~~~e~-~gdv~i~~~~~ 170 (194)
.+|||.+.+. +. .+.++|+|+..
T Consensus 68 ----------~~laC~t~~~--~~~~~~~tiepl~~ 91 (232)
T PRK05950 68 ----------NGLACITPIS--DLKKGKIVIRPLPG 91 (232)
T ss_pred ----------CccchhChHh--HcCCCeEEEEECCC
Confidence 2568888874 33 34578888754
No 35
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=98.49 E-value=1.6e-07 Score=81.91 Aligned_cols=93 Identities=14% Similarity=0.174 Sum_probs=61.5
Q ss_pred EEEEEecCCCCCCCCccEEEEE-ecCCchHHHHHHHHCCCcc----ccccCcccCCCCceeccCcEEEEccCcccCCCCC
Q 029369 58 IELEFIAPRAGDDGSYPVERAK-AISGEKLLRNIMLDNKIEL----YATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERT 132 (194)
Q Consensus 58 I~v~f~~~~~~~dg~~~v~~v~-v~~G~tLLr~aa~~~GI~l----~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t 132 (194)
++|..+++. .....|..++|+ +.+++|+| ++|....-.+ ..++.++++|+ .|.||+|.+.|. |...++-
T Consensus 5 ~~i~R~~~~-~~~~~~q~y~v~~~~~~~tvL-d~L~~Ik~~~~~~~~~~l~fr~sCr-~~iCGsCam~IN-G~p~~~~-- 78 (250)
T PRK07570 5 LKIWRQKGP-DDKGKFETYEVDDISPDMSFL-EMLDVLNEQLIEKGEEPVAFDHDCR-EGICGMCGLVIN-GRPHGPD-- 78 (250)
T ss_pred EEEEecCCC-CCCceeEEEEecCCCCCCcHH-HHHHHHHHHhhccCCCCeeEecccc-CCcCCcceeEEC-CccCCCC--
Confidence 445444421 122346556777 67899999 9997543211 11367788999 999999999995 7754321
Q ss_pred hHHHhccCCCCCCeEEeeeeEeccccC-CccEEEEecc
Q 029369 133 NTELRYLKKKPESWRLACQTIVGNKEN-SGKVCSRTMF 169 (194)
Q Consensus 133 ~~E~~~L~~~~~g~RLaCQ~~v~~~e~-~gdv~i~~~~ 169 (194)
..||||++.+. +.. .+.|+|+|+.
T Consensus 79 ------------~~~LAC~t~~~-~~~~~~~i~iePl~ 103 (250)
T PRK07570 79 ------------RGTTTCQLHMR-SFKDGDTITIEPWR 103 (250)
T ss_pred ------------cccchhhhhhh-hcCCCCeEEEEECC
Confidence 14899999875 222 2578999985
No 36
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=98.44 E-value=1.4e-07 Score=79.94 Aligned_cols=74 Identities=26% Similarity=0.338 Sum_probs=54.9
Q ss_pred CccEEEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHHHhccCCCCCCeEEeee
Q 029369 72 SYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQ 151 (194)
Q Consensus 72 ~~~v~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLaCQ 151 (194)
.|..+++++.+|+||| ++|.+.+......++.+..|+ .|.||+|.|+|. |. .+|||+
T Consensus 13 ~~~~~~v~~~~~~tvl-~~l~~i~~~~~~~l~~~~~C~-~g~Cg~C~v~vn-G~--------------------~~laC~ 69 (220)
T TIGR00384 13 HLQSYEVPADEGMTVL-DALNYIKDEQDPSLAFRRSCR-NGICGSCAMNVN-GK--------------------PVLACK 69 (220)
T ss_pred eeEEEEEeCCCCCcHH-HHHHHHHHhcCCCceeecccC-CCCCCCCeeEEC-CE--------------------Ehhhhh
Confidence 4555678888999999 999987744433455667898 899999999974 64 367899
Q ss_pred eEeccccCCcc--EEEEecchh
Q 029369 152 TIVGNKENSGK--VCSRTMFLL 171 (194)
Q Consensus 152 ~~v~~~e~~gd--v~i~~~~~~ 171 (194)
+.+. ++ |+ ++|+|+..+
T Consensus 70 t~v~--~~-g~~~~~iepl~~~ 88 (220)
T TIGR00384 70 TKVE--DL-GQPVMKIEPLPNL 88 (220)
T ss_pred ChHH--Hc-CCCcEEEeeCCCC
Confidence 8885 32 44 788887553
No 37
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.44 E-value=3.5e-07 Score=66.89 Aligned_cols=67 Identities=25% Similarity=0.366 Sum_probs=41.8
Q ss_pred CcEEEEEecCCCCCCCCccEEEEEecCCchHHHHHHHHCCCccccccCc----ccCCCCceeccCcEEEEccCcccCCCC
Q 029369 56 PEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGK----VMNCGGGGSCGTCIVEIIDGKDLLNER 131 (194)
Q Consensus 56 ~~I~v~f~~~~~~~dg~~~v~~v~v~~G~tLLr~aa~~~GI~l~~~~~~----~~~C~G~G~CGTC~V~V~~G~~~l~~~ 131 (194)
..|+|+|.+ +++++.+|+||| +|+.++|+.++..-.- ...|. .|.|+.|.|.|. |..
T Consensus 2 ~~v~i~idG-----------~~v~~~~G~til-~al~~~gi~ip~~c~~~~~r~~~~~-~g~C~~C~Vev~-g~~----- 62 (82)
T PF13510_consen 2 KMVTITIDG-----------KPVEVPPGETIL-EALLAAGIDIPRLCYHGRPRGGLCP-IGSCRLCLVEVD-GEP----- 62 (82)
T ss_dssp EEEEEEETT-----------EEEEEEET-BHH-HHHHHTT--B-EETTTS-EEBSSSS-STT-SS-EEEES-SEE-----
T ss_pred CEEEEEECC-----------EEEEEcCCCHHH-HHHHHCCCeEEEeeeccCcccccCC-ccccceEEEEEC-CCc-----
Confidence 357777643 467899999999 9999999999973221 23343 699999999996 432
Q ss_pred ChHHHhccCCCCCCeEEeeeeEec
Q 029369 132 TNTELRYLKKKPESWRLACQTIVG 155 (194)
Q Consensus 132 t~~E~~~L~~~~~g~RLaCQ~~v~ 155 (194)
...||++.+.
T Consensus 63 --------------~v~AC~t~v~ 72 (82)
T PF13510_consen 63 --------------NVRACSTPVE 72 (82)
T ss_dssp --------------EEETTT-B--
T ss_pred --------------ceEcccCCCc
Confidence 3579999886
No 38
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=98.13 E-value=6.4e-06 Score=81.90 Aligned_cols=59 Identities=19% Similarity=0.311 Sum_probs=48.6
Q ss_pred EEEEecCCchHHHHHHHHCCCccccccCcccCCC-----CceeccCcEEEEccCcccCCCCChHHHhccCCCCCCeEEee
Q 029369 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLAC 150 (194)
Q Consensus 76 ~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~-----G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLaC 150 (194)
+++++++|+||| +|++++||.+|+ .|. +.|.|+.|.|+|.+|... ...+++++|
T Consensus 9 ~~~~~~~g~til-~a~~~~gi~ip~------~C~~~~~~~~G~C~~C~v~v~~g~~~--------------~~~~~~~aC 67 (847)
T PRK08166 9 KEYEVNGADNLL-EACLSLGIDIPY------FCWHPALGSVGACRQCAVKQYQNPED--------------TRGRLVMSC 67 (847)
T ss_pred EEEEeCCCCHHH-HHHHHcCCCCCc------cccCCCCCCCCccCCCeEEEeecCcc--------------CCCCcccCc
Confidence 457899999999 999999999998 697 358999999999988521 124588899
Q ss_pred eeEec
Q 029369 151 QTIVG 155 (194)
Q Consensus 151 Q~~v~ 155 (194)
++.+.
T Consensus 68 ~~~v~ 72 (847)
T PRK08166 68 MTPAT 72 (847)
T ss_pred CCCCC
Confidence 99886
No 39
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=97.65 E-value=0.00016 Score=62.21 Aligned_cols=43 Identities=28% Similarity=0.636 Sum_probs=31.9
Q ss_pred EEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCc
Q 029369 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGK 125 (194)
Q Consensus 76 ~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~ 125 (194)
+++++.++++|| ++|++.. .+. +....|+ .|.||.|.|.| +|.
T Consensus 61 ~~~~v~~~~tLL-d~LR~~l-~lt---GtK~GC~-~G~CGACTVlV-dG~ 103 (217)
T PRK11433 61 EQLEVDTRTTLL-DALREHL-HLT---GTKKGCD-HGQCGACTVLV-NGR 103 (217)
T ss_pred EEEecCCCCcHH-HHHHHhc-CCC---CCCCCCC-CCCcCceEEEE-CCE
Confidence 467899999999 9998742 222 2234698 89999999955 575
No 40
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.51 E-value=0.00023 Score=69.19 Aligned_cols=70 Identities=33% Similarity=0.497 Sum_probs=53.8
Q ss_pred CcEEEEEecCCCCCCCCccEEEEEecCCchHHHHHHHHCCCccccccCcccCCC-----CceeccCcEEEEccCcccCCC
Q 029369 56 PEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEIIDGKDLLNE 130 (194)
Q Consensus 56 ~~I~v~f~~~~~~~dg~~~v~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~-----G~G~CGTC~V~V~~G~~~l~~ 130 (194)
..|+|++.+ +++++++|+||| +||+++|+.++. .|. +.|.|+.|.|+|. |..
T Consensus 2 ~~v~~~idg-----------~~~~~~~g~ti~-~a~~~~g~~ip~------~c~~~~~~~~g~C~~C~V~v~-g~~---- 58 (652)
T PRK12814 2 NTISLTING-----------RSVTAAPGTSIL-EAAASAGITIPT------LCFHQELEATGSCWMCIVEIK-GKN---- 58 (652)
T ss_pred CeEEEEECC-----------EEEEeCCcCcHH-HHHHHcCCcccc------ccCCCCCCCccccceeEEEEC-CCc----
Confidence 457776643 467899999999 999999999997 576 3799999999984 541
Q ss_pred CChHHHhccCCCCCCeEEeeeeEeccccCCccEEEE
Q 029369 131 RTNTELRYLKKKPESWRLACQTIVGNKENSGKVCSR 166 (194)
Q Consensus 131 ~t~~E~~~L~~~~~g~RLaCQ~~v~~~e~~gdv~i~ 166 (194)
+..+||++.+. +|+.+..
T Consensus 59 --------------~~~~aC~t~~~----~Gm~v~t 76 (652)
T PRK12814 59 --------------RFVPACSTAVS----EGMVIET 76 (652)
T ss_pred --------------ceecCcCCCCC----CCCEEEe
Confidence 14669999886 6665554
No 41
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=97.49 E-value=0.00048 Score=61.77 Aligned_cols=73 Identities=22% Similarity=0.384 Sum_probs=52.8
Q ss_pred CCCCcEEEEEecCCCCCCCCccEEEEEe-cCCchHHHHHHHHCCCccccccCcccCCC-----CceeccCcEEEEccCcc
Q 029369 53 PEKPEIELEFIAPRAGDDGSYPVERAKA-ISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEIIDGKD 126 (194)
Q Consensus 53 ~~~~~I~v~f~~~~~~~dg~~~v~~v~v-~~G~tLLr~aa~~~GI~l~~~~~~~~~C~-----G~G~CGTC~V~V~~G~~ 126 (194)
+..|++.|++.+ +++++ ++|+||| +|++++||.||+ .|. -.|.|..|.|.| +|..
T Consensus 64 ~~~~~~~I~IDG-----------k~VeV~~~G~TIL-eAAr~~GI~IPt------LCy~~~L~p~G~CRlClVEV-eG~~ 124 (297)
T PTZ00305 64 EHKPRAIMFVNK-----------RPVEIIPQEENLL-EVLEREGIRVPK------FCYHPILSVAGNCRMCLVQV-DGTQ 124 (297)
T ss_pred ccCCceEEEECC-----------EEEEecCCCChHH-HHHHHcCCCcCc------cccCCCCCCCCccceeEEEE-CCCc
Confidence 445677775532 46788 8999999 999999999998 464 246799999998 4542
Q ss_pred cCCCCChHHHhccCCCCCCeEEeeeeEeccccCCccEEEE
Q 029369 127 LLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVCSR 166 (194)
Q Consensus 127 ~l~~~t~~E~~~L~~~~~g~RLaCQ~~v~~~e~~gdv~i~ 166 (194)
. ..-||.+.+. +|+++..
T Consensus 125 ~------------------lv~AC~tpV~----eGM~V~T 142 (297)
T PTZ00305 125 N------------------LVVSCATVAL----PGMSIIT 142 (297)
T ss_pred C------------------cccccCCcCC----CCCEEEe
Confidence 2 2348888876 5665553
No 42
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=97.39 E-value=0.00048 Score=68.55 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=54.2
Q ss_pred CcEEEEEecCCCCCCCCccEEEEEecCCchHHHHHHHHCCCccccccCcccCCC-----CceeccCcEEEEccCcccCCC
Q 029369 56 PEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEIIDGKDLLNE 130 (194)
Q Consensus 56 ~~I~v~f~~~~~~~dg~~~v~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~-----G~G~CGTC~V~V~~G~~~l~~ 130 (194)
++|+|++.+ +++++++|+||| +|+..+||.+|+ .|. ..|.|.-|.|.|. |...
T Consensus 3 ~~v~~~idg-----------~~~~~~~g~til-~aa~~~gi~ip~------~C~~~~l~~~g~Cr~C~Vev~-g~~~--- 60 (797)
T PRK07860 3 DLVTLTIDG-----------VEVSVPKGTLVI-RAAELLGIQIPR------FCDHPLLDPVGACRQCLVEVE-GQRK--- 60 (797)
T ss_pred ceEEEEECC-----------EEEEeCCCChHH-HHHHHcCCCCCe------ecCCCCCCCCcccCccEEEEC-CCcc---
Confidence 567776533 467999999999 999999999998 574 3689999999994 5421
Q ss_pred CChHHHhccCCCCCCeEEeeeeEeccccCCccEEEEe
Q 029369 131 RTNTELRYLKKKPESWRLACQTIVGNKENSGKVCSRT 167 (194)
Q Consensus 131 ~t~~E~~~L~~~~~g~RLaCQ~~v~~~e~~gdv~i~~ 167 (194)
..-||.+.+. +|+++..-
T Consensus 61 ---------------~~~aC~t~v~----~gm~V~t~ 78 (797)
T PRK07860 61 ---------------PQASCTTTVT----DGMVVKTQ 78 (797)
T ss_pred ---------------cccccCCCCC----CCcEEEeC
Confidence 2449999886 67766543
No 43
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=97.35 E-value=0.00068 Score=68.04 Aligned_cols=64 Identities=28% Similarity=0.386 Sum_probs=48.4
Q ss_pred EEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHHHhccCCCCCCeEEeeeeEec
Q 029369 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVG 155 (194)
Q Consensus 76 ~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLaCQ~~v~ 155 (194)
+++++++|+||| +|+.++||.+|.- -....|...|.|+.|.|+|. |. ..+||++.+.
T Consensus 9 ~~v~~~~G~til-~aa~~~gi~iP~l-C~~~~~~~~G~Cr~C~VeV~-G~--------------------~~~AC~t~v~ 65 (819)
T PRK08493 9 KECEAQEGEYIL-NVARRNGIFIPAI-CYLSGCSPTLACRLCMVEAD-GK--------------------RVYSCNTKAK 65 (819)
T ss_pred EEEEeCCCCHHH-HHHHHcCCccccc-cccCCCCCCccccceEEEEC-CE--------------------EeccccCCCC
Confidence 567899999999 9999999999851 11124566799999999994 53 2569999886
Q ss_pred cccCCccEEEE
Q 029369 156 NKENSGKVCSR 166 (194)
Q Consensus 156 ~~e~~gdv~i~ 166 (194)
+|+.+..
T Consensus 66 ----dGM~V~T 72 (819)
T PRK08493 66 ----EGMNILT 72 (819)
T ss_pred ----CCCEEEe
Confidence 6765554
No 44
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=97.12 E-value=0.0013 Score=64.60 Aligned_cols=62 Identities=26% Similarity=0.364 Sum_probs=47.5
Q ss_pred EEEEecCCchHHHHHHHHCCCccccccCcccCCC-----CceeccCcEEEEccCcccCCCCChHHHhccCCCCCCeEEee
Q 029369 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLAC 150 (194)
Q Consensus 76 ~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~-----G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLaC 150 (194)
++++|++|+||| +|++++||.+|. .|- -.|.|..|.|+|..+... ..-+|
T Consensus 9 ~~v~v~~g~til-~a~~~~gi~IP~------lCy~~~l~~~g~Cr~ClVev~~~~~~------------------~~~sC 63 (687)
T PRK09130 9 KEIEVPDGYTLL-QACEAAGAEIPR------FCYHERLSIAGNCRMCLVEVKGGPPK------------------PVASC 63 (687)
T ss_pred EEEEeCCCCHHH-HHHHHcCCCcCc------ccCCCCCCCCCCCCCCEEEECCCCCC------------------ccccc
Confidence 578999999999 999999999998 684 358899999999633121 23388
Q ss_pred eeEeccccCCccEEEE
Q 029369 151 QTIVGNKENSGKVCSR 166 (194)
Q Consensus 151 Q~~v~~~e~~gdv~i~ 166 (194)
.+.+. +|+++..
T Consensus 64 ~~~v~----~gm~v~T 75 (687)
T PRK09130 64 AMPVG----EGMVIFT 75 (687)
T ss_pred CCCCC----CCCEEEe
Confidence 88776 6666553
No 45
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=97.09 E-value=0.00082 Score=54.80 Aligned_cols=76 Identities=28% Similarity=0.476 Sum_probs=48.7
Q ss_pred EEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHHHhccCCCCCCeEEeeeeEec
Q 029369 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVG 155 (194)
Q Consensus 76 ~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLaCQ~~v~ 155 (194)
++++++++++|| ++|++. ..+. +....|+ .|.||.|.|.|. |+ .+.+|-..+.
T Consensus 11 ~~~~~~~~~~Ll-~~LR~~-lglt---g~K~gC~-~G~CGACtVlvd-g~--------------------~v~SCl~~~~ 63 (148)
T TIGR03193 11 REDAVADNMLLV-DYLRDT-VGLT---GTKQGCD-GGECGACTVLVD-GR--------------------PRLACSTLAH 63 (148)
T ss_pred EEeecCCCCcHH-HHHHHh-cCCC---CCCCCCC-CCCCCCCEEEEC-Ce--------------------EeeccHhhHh
Confidence 467899999999 999874 2232 2445798 899999999994 54 3557766553
Q ss_pred cccCCc--cEEEEecchhhHHHHHhhc
Q 029369 156 NKENSG--KVCSRTMFLLNLLAFLQKE 180 (194)
Q Consensus 156 ~~e~~g--dv~i~~~~~~~~~~~~~~~ 180 (194)
..+| -++|+.+.....+.-+|+.
T Consensus 64 --~~~G~~V~TiEgl~~~~~l~pvq~a 88 (148)
T TIGR03193 64 --RVAGRKVETVEGLATNGRLSRLQQA 88 (148)
T ss_pred --hcCCCcEEEeCCCCCCCCCCHHHHH
Confidence 3333 3566665533333334443
No 46
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=97.08 E-value=0.0012 Score=63.34 Aligned_cols=62 Identities=26% Similarity=0.336 Sum_probs=49.0
Q ss_pred EEEEecCCchHHHHHHHHCCCccccccCcccCCC-----CceeccCcEEEEccCcccCCCCChHHHhccCCCCCCeEEee
Q 029369 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLAC 150 (194)
Q Consensus 76 ~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~-----G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLaC 150 (194)
+++++++|+||| +|++++||.+|+ .|. ..|.|..|.|+|. |... ....||
T Consensus 6 ~~~~~~~g~~il-~a~~~~gi~ip~------~C~~~~l~~~g~Cr~C~v~v~-g~~~-----------------~~~~aC 60 (603)
T TIGR01973 6 KELEVPKGTTVL-QACLSAGIEIPR------FCYHEKLSIAGNCRMCLVEVE-KFPD-----------------KPVASC 60 (603)
T ss_pred EEEEeCCCCHHH-HHHHHcCCCccc------cCCCCCCCCCCccccCEEEEC-CCCC-----------------Cccccc
Confidence 578999999999 999999999998 694 3689999999985 4321 034599
Q ss_pred eeEeccccCCccEEEE
Q 029369 151 QTIVGNKENSGKVCSR 166 (194)
Q Consensus 151 Q~~v~~~e~~gdv~i~ 166 (194)
++.+. +|+++..
T Consensus 61 ~~~~~----~gm~v~t 72 (603)
T TIGR01973 61 ATPVT----DGMKIST 72 (603)
T ss_pred CCCCC----CCCEEEe
Confidence 99887 6766554
No 47
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=97.04 E-value=0.00096 Score=54.99 Aligned_cols=42 Identities=24% Similarity=0.469 Sum_probs=33.4
Q ss_pred EEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCc
Q 029369 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGK 125 (194)
Q Consensus 76 ~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~ 125 (194)
++++++++++|| +.|++.|+. +....|+ .|.||.|.|.|. |.
T Consensus 18 ~~~~~~~~~~Ll-~~LR~~glt-----gtK~GC~-~G~CGACtVlvd-g~ 59 (159)
T PRK09908 18 FQLHAAPGTPLS-ELLREQGLL-----SVKQGCC-VGECGACTVLVD-GT 59 (159)
T ss_pred EEEecCCCCcHH-HHHHHcCCC-----CCCCCcC-CCCCCCcEEEEC-Cc
Confidence 467899999999 999986543 2345798 899999999984 54
No 48
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=96.71 E-value=0.0045 Score=61.18 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=47.8
Q ss_pred EEEEecCCchHHHHHHHHCCCccccccCcccCCCC-----ceeccCcEEEEccCcccCCCCChHHHhccCCCCCCeEEee
Q 029369 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGG-----GGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLAC 150 (194)
Q Consensus 76 ~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G-----~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLaC 150 (194)
+++++++|+||| +|++++||.+|+ .|.- .|.|.-|.|+|. |.. ..+.||
T Consensus 9 ~~~~~~~g~~il-~a~~~~g~~ip~------~c~~~~~~~~~~C~~C~v~v~-~~~------------------~~~~aC 62 (776)
T PRK09129 9 KKVEVPEGSMVI-EAADKAGIYIPR------FCYHKKLSIAANCRMCLVEVE-KAP------------------KPLPAC 62 (776)
T ss_pred EEEEeCCCCHHH-HHHHHcCCCCCc------ccCCCCCCCCCCcceeEEEEC-CCC------------------CcCccc
Confidence 578899999999 999999999997 5862 378999999984 432 124599
Q ss_pred eeEeccccCCccEEEE
Q 029369 151 QTIVGNKENSGKVCSR 166 (194)
Q Consensus 151 Q~~v~~~e~~gdv~i~ 166 (194)
.+.+. +|+.+..
T Consensus 63 ~~~~~----~gm~v~t 74 (776)
T PRK09129 63 ATPVT----DGMKVFT 74 (776)
T ss_pred CCCCC----CCCEEEc
Confidence 99886 6766654
No 49
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=96.38 E-value=0.016 Score=50.47 Aligned_cols=90 Identities=21% Similarity=0.307 Sum_probs=61.3
Q ss_pred CcEEEEEecCCCCCCCC-ccEEEEEec-CCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCCh
Q 029369 56 PEIELEFIAPRAGDDGS-YPVERAKAI-SGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTN 133 (194)
Q Consensus 56 ~~I~v~f~~~~~~~dg~-~~v~~v~v~-~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~ 133 (194)
.+++|-..+|+..++.. .-.++|+.. =|--+| |||.+..-++...++++-+|+ .|.||+|...|- |.
T Consensus 47 KtFeIYRwnPd~pg~kP~~Q~y~vDL~~CGpMvL-DALiKIKnE~DptLTFRRSCR-EGICGSCAMNI~-G~-------- 115 (288)
T KOG3049|consen 47 KTFEIYRWNPDNPGDKPHLQTYEVDLNDCGPMVL-DALIKIKNEMDPTLTFRRSCR-EGICGSCAMNIN-GT-------- 115 (288)
T ss_pred ceEEEEecCCCCCCCCccceeeeecHHhcchHHH-HHHHHhhcccCCceehhhhhh-ccccccceeccC-CC--------
Confidence 45677777776544432 222334433 355778 999998888888899999999 999999999985 44
Q ss_pred HHHhccCCCCCCeEEeeeeEeccccCCccEEEEecc
Q 029369 134 TELRYLKKKPESWRLACQTIVGNKENSGKVCSRTMF 169 (194)
Q Consensus 134 ~E~~~L~~~~~g~RLaCQ~~v~~~e~~gdv~i~~~~ 169 (194)
.-|||-+.+. .+..-...|-|++
T Consensus 116 ------------NtLACi~kId-~n~sK~~kIyPLP 138 (288)
T KOG3049|consen 116 ------------NTLACICKID-QNESKSTKIYPLP 138 (288)
T ss_pred ------------ceeEEEEeec-cCCcccceeecCc
Confidence 3578888875 3333344555554
No 50
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=95.89 E-value=0.02 Score=57.39 Aligned_cols=42 Identities=40% Similarity=0.616 Sum_probs=35.5
Q ss_pred EEEEecCCchHHHHHHHHCCCccccccCcccCCC-----CceeccCcEEEEccCc
Q 029369 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEIIDGK 125 (194)
Q Consensus 76 ~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~-----G~G~CGTC~V~V~~G~ 125 (194)
+.++|++|+||| +++.++||++|+ .|- --+.|-+|.|.| +|.
T Consensus 13 ~~~~v~~G~tiL-~a~~~~gI~iP~------iCy~~~l~pi~sCd~ClVEi-dG~ 59 (978)
T COG3383 13 RSIEVEEGTTIL-RAANRNGIEIPH------ICYHESLGPIGSCDTCLVEI-DGK 59 (978)
T ss_pred eEEecCCChHHH-HHHHhcCCcccc------eeccCCCCcccccceEEEEe-cCc
Confidence 467899999999 999999999998 685 236799999995 576
No 51
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=95.80 E-value=0.024 Score=56.21 Aligned_cols=63 Identities=22% Similarity=0.333 Sum_probs=46.0
Q ss_pred EEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCcccCCCCChHHHhccCCCCCCeEEeeeeEec
Q 029369 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVG 155 (194)
Q Consensus 76 ~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLaCQ~~v~ 155 (194)
.+++++.|+||| +|++.+||+||+. =---.|+=.|.|..|.|.+..+. + ..-+|-+.+.
T Consensus 9 ~ei~v~~g~tvL-qAa~~aGi~IP~f-Cyh~~ls~~GaCRmClVEveg~~-k------------------~~~SC~tpv~ 67 (693)
T COG1034 9 KEIEVPEGETVL-QAAREAGIDIPTF-CYHPRLSIAGACRMCLVEVEGAP-K------------------LVASCATPVT 67 (693)
T ss_pred EEEecCCCcHHH-HHHHHcCCCCCcc-cccCCCCcccceeEEEEEecCCC-c------------------cccccccccC
Confidence 478999999999 9999999999972 00012344678999999986433 1 2448988776
Q ss_pred cccCCccE
Q 029369 156 NKENSGKV 163 (194)
Q Consensus 156 ~~e~~gdv 163 (194)
+|++
T Consensus 68 ----dGM~ 71 (693)
T COG1034 68 ----DGMV 71 (693)
T ss_pred ----CCeE
Confidence 6776
No 52
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=95.33 E-value=0.04 Score=45.05 Aligned_cols=42 Identities=29% Similarity=0.609 Sum_probs=31.4
Q ss_pred EEEEecCCchHHHHHHHHC-CCccccccCcccCCCCceeccCcEEEEccCc
Q 029369 76 ERAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEIIDGK 125 (194)
Q Consensus 76 ~~v~v~~G~tLLr~aa~~~-GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~ 125 (194)
.++.+.++++|+ +.|++. |+. + ....|+ .|.||.|.|.|. |.
T Consensus 13 ~~~~~~~~~~Ll-~~LR~~~~lt--g---tK~gC~-~G~CGACtVlvd-G~ 55 (151)
T TIGR03198 13 WEVAAVPTTRLS-DLLRKELQLT--G---TKVSCG-IGRCGACSVLID-GK 55 (151)
T ss_pred EEeecCCCcHHH-HHHHhccCCC--C---CCCCCC-CCcCCccEEEEC-Cc
Confidence 456788999999 988763 543 2 234698 899999999994 54
No 53
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=95.01 E-value=0.019 Score=58.67 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=31.7
Q ss_pred EEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCc
Q 029369 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGK 125 (194)
Q Consensus 76 ~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~ 125 (194)
++++++++++|| +.|++.| +.+ .+...|+ .|.||.|.|.|. |.
T Consensus 12 ~~~~~~~~~~l~-~~LR~~~--~~~--~k~g~c~-~g~CGaCtv~~d-g~ 54 (956)
T PRK09800 12 QELTVNPGENVQ-KLLFNMG--MHS--VRNSDDG-FGFAGSDAIIFN-GN 54 (956)
T ss_pred EEEecCCCCCHH-HHHHHCC--CCc--cccCCCC-cccCCCCEEEEC-Ce
Confidence 467899999999 9998844 443 1222355 899999999994 54
No 54
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=94.30 E-value=0.12 Score=42.65 Aligned_cols=43 Identities=28% Similarity=0.583 Sum_probs=32.6
Q ss_pred EEEEecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEccCc
Q 029369 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGK 125 (194)
Q Consensus 76 ~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~ 125 (194)
+++++.++++|| ++|++. +.+.+ .-+.|+ .|.||.|-|.+. |.
T Consensus 13 ~~~~~~p~~~Ll-~~LRd~-l~ltg---tk~GC~-~g~CGACtVlvD-G~ 55 (156)
T COG2080 13 VELDVDPRTPLL-DVLRDE-LGLTG---TKKGCG-HGQCGACTVLVD-GE 55 (156)
T ss_pred EEEEeCCCChHH-HHHHHh-cCCCC---cCCCCC-CccCCceEEEEC-Ce
Confidence 578999999999 988754 22322 234698 999999999985 65
No 55
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=92.57 E-value=0.084 Score=54.07 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=31.9
Q ss_pred EEEEecCCchHHHHHHHHCCCccccccCccc-CCCCceeccCcEEEEccCc
Q 029369 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVM-NCGGGGSCGTCIVEIIDGK 125 (194)
Q Consensus 76 ~~v~v~~G~tLLr~aa~~~GI~l~~~~~~~~-~C~G~G~CGTC~V~V~~G~ 125 (194)
++++++++++|| +.|++.|+. + ... .|+ .|.||.|.|.|. |.
T Consensus 8 ~~~~~~~~~~l~-~~LR~~~l~--~---~k~~~c~-~g~CGaCtv~~d-g~ 50 (951)
T TIGR03313 8 QTLECKLGENVQ-TLLFNMGMH--S---VRNSDDG-FGFAGSDAILFN-GV 50 (951)
T ss_pred EEEecCCCCCHH-HHHHHCCCC--C---CcCCCCC-cccCCCCEEEEC-Ce
Confidence 467889999999 999987543 2 122 465 899999999994 65
No 56
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=91.62 E-value=0.24 Score=46.89 Aligned_cols=39 Identities=23% Similarity=0.563 Sum_probs=30.3
Q ss_pred EEE-EecCCchHHHHHHHHC-CCccccccCcccCCCCceeccCcEEEE
Q 029369 76 ERA-KAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEI 121 (194)
Q Consensus 76 ~~v-~v~~G~tLLr~aa~~~-GI~l~~~~~~~~~C~G~G~CGTC~V~V 121 (194)
+++ +++++++|| +.|++. |+. |....|+ .|.||.|.|.|
T Consensus 10 ~~~~~~~~~~~ll-~~lR~~~~l~-----g~k~gC~-~G~CGaCtv~~ 50 (467)
T TIGR02963 10 VTLSDVDPTRTLL-DYLREDAGLT-----GTKEGCA-EGDCGACTVVV 50 (467)
T ss_pred EEeecCCCCCCHH-HHHHHhcCCC-----CCCcccC-CCCCCceEEEE
Confidence 356 589999999 998863 533 2345698 89999999999
No 57
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=89.78 E-value=1.3 Score=45.33 Aligned_cols=57 Identities=18% Similarity=0.328 Sum_probs=42.2
Q ss_pred CCcEEEEEecCCCCCCCCccEEEEEecCCchHHHHHHHHCCCcccc-c--cCc--ccCCCCceeccCcEEEEccC
Q 029369 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYA-T--YGK--VMNCGGGGSCGTCIVEIIDG 124 (194)
Q Consensus 55 ~~~I~v~f~~~~~~~dg~~~v~~v~v~~G~tLLr~aa~~~GI~l~~-~--~~~--~~~C~G~G~CGTC~V~V~~G 124 (194)
...|+|+|.+ +.+++.+|+||. .||+.+|+.+-. + |+. ...|. .|.|-.|.|.|..|
T Consensus 10 ~~~~~~~~dg-----------~~~~~~~g~t~a-~al~a~g~~~~~~s~~~~~prg~~c~-~~~~~~c~v~i~~~ 71 (985)
T TIGR01372 10 SRPLRFTFDG-----------KSYSGFAGDTLA-SALLANGVHLVGRSFKYHRPRGILTA-GVEEPNALVTVGSG 71 (985)
T ss_pred CCeEEEEECC-----------EEeecCCCCHHH-HHHHhCCCeeecccCCCCCCCccccc-CccCCCeEEEECCC
Confidence 3468887754 457899999999 999999987543 2 111 16797 67899999999654
No 58
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=89.75 E-value=0.44 Score=40.55 Aligned_cols=34 Identities=24% Similarity=0.546 Sum_probs=28.6
Q ss_pred HHHHHCCCccccccCcccCCCCceeccCcEEEEcc
Q 029369 89 NIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIID 123 (194)
Q Consensus 89 ~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~ 123 (194)
+++++.|++....+...+.|+ .|.||+|.+...+
T Consensus 197 ~~L~~~Gv~~~~~~~~~~~~~-~g~c~~c~~~~~~ 230 (246)
T cd06218 197 ELAAERGVPCQVSLEERMACG-IGACLGCVVKTKD 230 (246)
T ss_pred HHHHhcCCCEEEEecccccCc-cceecccEEEeec
Confidence 667889998666667778887 8999999999875
No 59
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=89.57 E-value=0.23 Score=42.17 Aligned_cols=34 Identities=29% Similarity=0.805 Sum_probs=27.3
Q ss_pred HHHHHCCCccccccCcccCCCCceeccCcEEEEcc
Q 029369 89 NIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIID 123 (194)
Q Consensus 89 ~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~ 123 (194)
+++.+.|++..-....++.|| .|.||+|.+.+..
T Consensus 198 ~~l~~~Gv~~~~~~e~~m~cg-~G~C~~C~~~~~~ 231 (250)
T PRK00054 198 EILKEKKVPAYVSLERRMKCG-IGACGACVCDTET 231 (250)
T ss_pred HHHHHcCCcEEEEEcccccCc-CcccCcCCcccCC
Confidence 667788987666667778887 9999999998654
No 60
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=89.27 E-value=0.21 Score=43.68 Aligned_cols=35 Identities=31% Similarity=0.731 Sum_probs=29.9
Q ss_pred HHHHHCCCc---cccccCcccCCCCceeccCcEEEEccC
Q 029369 89 NIMLDNKIE---LYATYGKVMNCGGGGSCGTCIVEIIDG 124 (194)
Q Consensus 89 ~aa~~~GI~---l~~~~~~~~~C~G~G~CGTC~V~V~~G 124 (194)
+.+.+.|++ +..++..++.|| .|.||.|+|....|
T Consensus 229 ~~L~~~Gv~~~~i~~~l~~~m~cg-~g~c~~c~~~~~~~ 266 (289)
T PRK08345 229 KELINRGYRPERIYVTLERRMRCG-IGKCGHCIVGTSTS 266 (289)
T ss_pred HHHHHcCCCHHHEEEEehhccccc-CcccCCCccCCCCc
Confidence 778889996 777788899998 99999999997654
No 61
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=88.55 E-value=0.54 Score=47.65 Aligned_cols=41 Identities=32% Similarity=0.770 Sum_probs=31.4
Q ss_pred EEEecCCchHHHHHHHHC-CCccccccCcccCCCCceeccCcEEEEccCc
Q 029369 77 RAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEIIDGK 125 (194)
Q Consensus 77 ~v~v~~G~tLLr~aa~~~-GI~l~~~~~~~~~C~G~G~CGTC~V~V~~G~ 125 (194)
+++++++++|| +.|++. |+. +....|+ .|.||.|.|.| +|.
T Consensus 9 ~~~~~~~~~l~-~~lr~~~~~~-----~~k~gc~-~g~cgactv~~-dg~ 50 (848)
T TIGR03311 9 EVDVNEEKKLL-EFLREDLRLT-----GVKNGCG-EGACGACTVIV-NGK 50 (848)
T ss_pred EeeCCCCCcHH-HHHHHhcCCC-----cCCCCCC-CCCCCCcEEEE-CCe
Confidence 56788999999 988863 543 2334698 89999999999 464
No 62
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=88.38 E-value=0.7 Score=49.06 Aligned_cols=39 Identities=31% Similarity=0.675 Sum_probs=30.2
Q ss_pred EEEecCCchHHHHHHHHC-CCccccccCcccCCCCceeccCcEEEEc
Q 029369 77 RAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEII 122 (194)
Q Consensus 77 ~v~v~~G~tLLr~aa~~~-GI~l~~~~~~~~~C~G~G~CGTC~V~V~ 122 (194)
...+.++++|| +.|++. |+. |....|+ .|.||.|.|.|.
T Consensus 14 ~~~~~~~~~ll-~~LR~~~~l~-----gtk~gC~-~G~CGaCtV~~~ 53 (1330)
T TIGR02969 14 EKNVDPETMLL-PYLRKKLRLT-----GTKYGCG-GGGCGACTVMIS 53 (1330)
T ss_pred eccCCCCCcHH-HHHHhhcCCC-----CCCCCcC-CCCCCCcEEEEC
Confidence 45789999999 988863 433 2334698 899999999996
No 63
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=88.24 E-value=0.44 Score=40.47 Aligned_cols=32 Identities=25% Similarity=0.491 Sum_probs=28.3
Q ss_pred HHHHHCCCccccccCcccCCCCceeccCcEEEE
Q 029369 89 NIMLDNKIELYATYGKVMNCGGGGSCGTCIVEI 121 (194)
Q Consensus 89 ~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V 121 (194)
+.+.+.|++..-+...++.|| .|.|+.|.|..
T Consensus 197 ~~l~~~Gv~~~~s~e~~m~Cg-~G~C~~C~~~~ 228 (248)
T cd06219 197 ELTRPYGIPTVVSLNPIMVDG-TGMCGACRVTV 228 (248)
T ss_pred HHHHHcCCCEEEEecccccCc-cceeeeEEEEe
Confidence 677789999888878889998 99999999996
No 64
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=88.05 E-value=0.31 Score=41.66 Aligned_cols=31 Identities=26% Similarity=0.738 Sum_probs=26.8
Q ss_pred HHHHHCCCc---cccccCcccCCCCceeccCcEEE
Q 029369 89 NIMLDNKIE---LYATYGKVMNCGGGGSCGTCIVE 120 (194)
Q Consensus 89 ~aa~~~GI~---l~~~~~~~~~C~G~G~CGTC~V~ 120 (194)
++|.+.|++ +..+++..+.|+ .|.||+|+|.
T Consensus 207 ~~L~~~Gv~~~~i~~~~~~~~~~~-~g~c~~c~~~ 240 (253)
T cd06221 207 KELLKLGVPEEQIWVSLERRMKCG-VGKCGHCQIG 240 (253)
T ss_pred HHHHHcCCCHHHEEEehhhccccC-CccccCcccC
Confidence 778899997 777777778887 9999999987
No 65
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=87.42 E-value=0.56 Score=40.84 Aligned_cols=32 Identities=25% Similarity=0.514 Sum_probs=28.4
Q ss_pred HHHHHCCCccccccCcccCCCCceeccCcEEEE
Q 029369 89 NIMLDNKIELYATYGKVMNCGGGGSCGTCIVEI 121 (194)
Q Consensus 89 ~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V 121 (194)
+++.+.|+++..++..++.|| .|.|+.|.|..
T Consensus 198 ~~l~~~gv~~~~sle~~M~CG-~G~C~~C~v~~ 229 (281)
T PRK06222 198 ELTKPYGIKTIVSLNPIMVDG-TGMCGACRVTV 229 (281)
T ss_pred HHHHhcCCCEEEECcccccCc-ccccceeEEEE
Confidence 667789999888889999996 99999999975
No 66
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=85.42 E-value=0.64 Score=38.99 Aligned_cols=33 Identities=24% Similarity=0.630 Sum_probs=25.1
Q ss_pred HHHHHCCCccccccCcccCCCCceeccCcEEEEc
Q 029369 89 NIMLDNKIELYATYGKVMNCGGGGSCGTCIVEII 122 (194)
Q Consensus 89 ~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~ 122 (194)
++|++.|++..-.+...+.|+ .|.||+|.|...
T Consensus 184 ~~L~~~g~~~~i~~e~f~~cg-~g~C~~C~v~~~ 216 (233)
T cd06220 184 EILDERGVRAQFSLERYMKCG-IGICGSCCIDPT 216 (233)
T ss_pred HHHHhcCCcEEEEecccccCc-CCCcCccEeccC
Confidence 677888885443445667787 999999999974
No 67
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=84.60 E-value=0.54 Score=40.55 Aligned_cols=31 Identities=32% Similarity=0.899 Sum_probs=25.1
Q ss_pred HHHHHCCCc---cccccCcccCCCCceeccCcEEE
Q 029369 89 NIMLDNKIE---LYATYGKVMNCGGGGSCGTCIVE 120 (194)
Q Consensus 89 ~aa~~~GI~---l~~~~~~~~~C~G~G~CGTC~V~ 120 (194)
+.+.+.|++ +..+++.++.|+ .|.||.|+|.
T Consensus 207 ~~L~~~Gv~~~~i~~~~~~~m~cg-~g~c~~c~~~ 240 (261)
T TIGR02911 207 QELLKKGIKEENIWVSYERKMCCG-VGKCGHCKID 240 (261)
T ss_pred HHHHHcCCCHHHEEEEeccceecc-CcCCCCcccC
Confidence 667788985 556777888887 9999999876
No 68
>PRK05802 hypothetical protein; Provisional
Probab=84.13 E-value=1.3 Score=39.65 Aligned_cols=33 Identities=33% Similarity=0.633 Sum_probs=26.3
Q ss_pred HHHHH--CCCccccccCcccCCCCceeccCcEEEEc
Q 029369 89 NIMLD--NKIELYATYGKVMNCGGGGSCGTCIVEII 122 (194)
Q Consensus 89 ~aa~~--~GI~l~~~~~~~~~C~G~G~CGTC~V~V~ 122 (194)
+.+.+ .||+...++..++.|| .|.||.|.|...
T Consensus 271 ~~l~~~~~~i~~~~Sle~~M~CG-~G~Cg~C~v~~~ 305 (320)
T PRK05802 271 EYLDKLNEKIKLSCSNNAKMCCG-EGICGACTVRYG 305 (320)
T ss_pred HHHhhhcCCceEEEeCCCeeeCc-CccCCeeEEEEC
Confidence 44445 6888777778889998 999999999964
No 69
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=84.10 E-value=0.54 Score=40.59 Aligned_cols=31 Identities=32% Similarity=0.842 Sum_probs=25.8
Q ss_pred HHHHHCCCc---cccccCcccCCCCceeccCcEEE
Q 029369 89 NIMLDNKIE---LYATYGKVMNCGGGGSCGTCIVE 120 (194)
Q Consensus 89 ~aa~~~GI~---l~~~~~~~~~C~G~G~CGTC~V~ 120 (194)
+.+++.|++ +..++...+.|+ .|.||+|+|.
T Consensus 209 ~~L~~~Gv~~~~i~~~~~~~m~cg-~g~c~~c~~~ 242 (263)
T PRK08221 209 LEFLKRGIKEENIWVSYERKMCCG-VGKCGHCKID 242 (263)
T ss_pred HHHHHcCCCHHHEEEEecceeEcc-CcccCCcccC
Confidence 667889995 557778888998 9999999976
No 70
>PLN00192 aldehyde oxidase
Probab=82.70 E-value=2.1 Score=45.65 Aligned_cols=40 Identities=23% Similarity=0.546 Sum_probs=30.3
Q ss_pred EEE-EecCCchHHHHHHHHC-CCccccccCcccCCCCceeccCcEEEEc
Q 029369 76 ERA-KAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEII 122 (194)
Q Consensus 76 ~~v-~v~~G~tLLr~aa~~~-GI~l~~~~~~~~~C~G~G~CGTC~V~V~ 122 (194)
+++ .+.++++|| +.|++. |+. + ....|+ .|.||.|.|.|.
T Consensus 15 ~~~~~~~p~~~Ll-~~LR~~~~lt--g---tK~gC~-~G~CGaCtV~v~ 56 (1344)
T PLN00192 15 FELSSVDPSTTLL-EFLRTQTPFK--S---VKLGCG-EGGCGACVVLLS 56 (1344)
T ss_pred EEeccCCCCCcHH-HHHHHhhCCC--C---cCCCCC-CCcCCCcEEEEe
Confidence 345 588999999 988864 433 2 335698 899999999994
No 71
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=81.74 E-value=2.3 Score=41.54 Aligned_cols=46 Identities=17% Similarity=0.421 Sum_probs=33.0
Q ss_pred EEEEecCCchHHHHHHHHCCCccccc-cCcccCCCCceeccCcEEEEccC
Q 029369 76 ERAKAISGEKLLRNIMLDNKIELYAT-YGKVMNCGGGGSCGTCIVEIIDG 124 (194)
Q Consensus 76 ~~v~v~~G~tLLr~aa~~~GI~l~~~-~~~~~~C~G~G~CGTC~V~V~~G 124 (194)
+.|.|++|+|+| +|....|+++|-. |+-+.+=. |-|--|.|.|...
T Consensus 40 ~~v~v~pg~tvl-qac~~~gv~iprfcyh~rlsva--gncrmclveveks 86 (708)
T KOG2282|consen 40 QSVMVEPGTTVL-QACAKVGVDIPRFCYHERLSVA--GNCRMCLVEVEKS 86 (708)
T ss_pred eeEeeCCCcHHH-HHHHHhCCCcchhhhhhhhhhc--cceeEEEEEeccC
Confidence 467899999999 9999999999972 22222222 5688888877543
No 72
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=78.59 E-value=2 Score=36.03 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=25.8
Q ss_pred HHHHHC--CCccccccCcccCCCCceeccCcEEEEc
Q 029369 89 NIMLDN--KIELYATYGKVMNCGGGGSCGTCIVEII 122 (194)
Q Consensus 89 ~aa~~~--GI~l~~~~~~~~~C~G~G~CGTC~V~V~ 122 (194)
+.+.+. ++++..+....+.|+ .|.||.|.+...
T Consensus 195 ~~l~~~g~~~~~~~s~~~~m~Cg-~G~C~~C~~~~~ 229 (243)
T cd06192 195 EALDEWLQLIKASVSNNSPMCCG-IGICGACTIETK 229 (243)
T ss_pred HHHHhhcCCceEEEECCccccCc-cccccceEEEeC
Confidence 455555 567777778889998 999999999864
No 73
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=72.49 E-value=3.3 Score=41.03 Aligned_cols=32 Identities=25% Similarity=0.476 Sum_probs=27.5
Q ss_pred HHHHHCCCccccccCcccCCCCceeccCcEEEE
Q 029369 89 NIMLDNKIELYATYGKVMNCGGGGSCGTCIVEI 121 (194)
Q Consensus 89 ~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V 121 (194)
+++.+.|++...++..++.|| .|.||.|.|..
T Consensus 198 ~~l~~~gv~~~~Sle~~M~CG-~G~C~~C~v~~ 229 (752)
T PRK12778 198 LLTKKYGIPTIVSLNTIMVDG-TGMCGACRVTV 229 (752)
T ss_pred HHHHHcCCCEEEeCcccccCc-ccccCcceeEe
Confidence 667788999888888889997 99999999953
No 74
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=68.42 E-value=3.1 Score=26.61 Aligned_cols=20 Identities=50% Similarity=1.195 Sum_probs=14.5
Q ss_pred ccCCCCceeccCcEEEEccCc
Q 029369 105 VMNCGGGGSCGTCIVEIIDGK 125 (194)
Q Consensus 105 ~~~C~G~G~CGTC~V~V~~G~ 125 (194)
++.|+ -|.|+.|.+...++.
T Consensus 3 ~M~CG-~G~C~~C~v~~~~~~ 22 (40)
T PF10418_consen 3 RMACG-VGACGGCVVPVKDGD 22 (40)
T ss_dssp --SSS-SSSS-TTEEECSSTT
T ss_pred cccCC-CcEeCCcEeeeecCC
Confidence 35797 999999999988653
No 75
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=60.45 E-value=7.2 Score=40.40 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=26.1
Q ss_pred HHHHHCCCccccccCcccCCCCceeccCcEEEE
Q 029369 89 NIMLDNKIELYATYGKVMNCGGGGSCGTCIVEI 121 (194)
Q Consensus 89 ~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V 121 (194)
+++...||+..-++.-.+.|+ .|.||.|+|.+
T Consensus 198 ~~~~~~gi~~~vSle~~M~cG-~G~Cg~C~v~~ 229 (1006)
T PRK12775 198 ETTRPFGVKTMVSLNAIMVDG-TGMCGSCRVTV 229 (1006)
T ss_pred HHHHHCCCcEEECChhheeCc-cceeCCCEeee
Confidence 556678997776777788997 99999999974
No 76
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=59.90 E-value=8.2 Score=39.81 Aligned_cols=33 Identities=21% Similarity=0.507 Sum_probs=27.7
Q ss_pred HHHHHCCCccccccCcccCCCCceeccCcEEEEc
Q 029369 89 NIMLDNKIELYATYGKVMNCGGGGSCGTCIVEII 122 (194)
Q Consensus 89 ~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~ 122 (194)
+.+.+.|++...++..++.|+ -|.||.|.|.+.
T Consensus 864 ~~l~~~Gv~~~vSlE~~M~CG-~G~C~~C~v~~~ 896 (944)
T PRK12779 864 DLTKPYGVKTVASLNSIMVDA-TGMCGACMVPVT 896 (944)
T ss_pred HHHHHcCCCeEEeecccccCC-CeeeCeeeeeee
Confidence 667788999877777889997 999999999863
No 77
>PLN02906 xanthine dehydrogenase
Probab=57.68 E-value=10 Score=40.46 Aligned_cols=32 Identities=34% Similarity=0.813 Sum_probs=24.4
Q ss_pred chHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEc
Q 029369 84 EKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEII 122 (194)
Q Consensus 84 ~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~ 122 (194)
++|| +.|++ ..+.+ ....|+ .|.||.|.|.|.
T Consensus 2 ~~ll-~~LR~--~~l~g---~k~gC~-~g~CGaCtv~~~ 33 (1319)
T PLN02906 2 QTLL-EYLRD--LGLTG---TKLGCG-EGGCGACTVMVS 33 (1319)
T ss_pred CcHH-HHHHh--CCCCC---CCCCcC-CCCCCCeEEEEC
Confidence 5788 88886 44432 345698 899999999997
No 78
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=56.43 E-value=24 Score=33.60 Aligned_cols=36 Identities=25% Similarity=0.566 Sum_probs=26.7
Q ss_pred EecCCchHHHHHHH-HCCCccccccCcccCCCCceeccCcEEEE
Q 029369 79 KAISGEKLLRNIML-DNKIELYATYGKVMNCGGGGSCGTCIVEI 121 (194)
Q Consensus 79 ~v~~G~tLLr~aa~-~~GI~l~~~~~~~~~C~G~G~CGTC~V~V 121 (194)
++++.+||| +-|+ +.+..=-- =-|. .|-||.|.|.|
T Consensus 22 ~v~P~~TlL-d~LR~d~~ltGtK-----EGCA-EGDCGACTVlV 58 (493)
T COG4630 22 DVPPTTTLL-DYLRLDRRLTGTK-----EGCA-EGDCGACTVLV 58 (493)
T ss_pred cCCcchHHH-HHHHHhccccccc-----cccc-CCCcCceEEEE
Confidence 688999999 9887 45544111 1487 89999999986
No 79
>PRK01777 hypothetical protein; Validated
Probab=43.57 E-value=59 Score=24.42 Aligned_cols=24 Identities=8% Similarity=0.099 Sum_probs=20.8
Q ss_pred EEEEEecCCchHHHHHHHHCCCccc
Q 029369 75 VERAKAISGEKLLRNIMLDNKIELY 99 (194)
Q Consensus 75 v~~v~v~~G~tLLr~aa~~~GI~l~ 99 (194)
..++++++|.|+- +|+...||...
T Consensus 18 ~~~l~vp~GtTv~-dal~~sgi~~~ 41 (95)
T PRK01777 18 LQRLTLQEGATVE-EAIRASGLLEL 41 (95)
T ss_pred EEEEEcCCCCcHH-HHHHHcCCCcc
Confidence 3678999999987 99999999765
No 80
>PF09791 Oxidored-like: Oxidoreductase-like protein, N-terminal; InterPro: IPR019180 This entry represents the N-terminal domain of various oxidoreductase-like proteins whose exact function is, as yet, unknown.
Probab=33.47 E-value=28 Score=23.25 Aligned_cols=26 Identities=19% Similarity=0.549 Sum_probs=14.5
Q ss_pred CCCccccccCcccCCCCceeccCcEEE
Q 029369 94 NKIELYATYGKVMNCGGGGSCGTCIVE 120 (194)
Q Consensus 94 ~GI~l~~~~~~~~~C~G~G~CGTC~V~ 120 (194)
+||.+|........|-|+| |..|.--
T Consensus 4 ~gv~~P~~P~~p~~CCgSG-C~~CVwd 29 (48)
T PF09791_consen 4 AGVPVPPKPPEPDECCGSG-CAPCVWD 29 (48)
T ss_pred CCCCCCcCccCcccccccC-CccchhH
Confidence 3555444222234677788 9888543
No 81
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=32.41 E-value=44 Score=35.72 Aligned_cols=39 Identities=26% Similarity=0.549 Sum_probs=28.5
Q ss_pred EecCCchHHHHHHHHCCCccccccCcccCCCCceeccCcEEEEcc
Q 029369 79 KAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIID 123 (194)
Q Consensus 79 ~v~~G~tLLr~aa~~~GI~l~~~~~~~~~C~G~G~CGTC~V~V~~ 123 (194)
.++++.||+ .-| |....+-+ .-+.|+ .|-||.|.|-|..
T Consensus 16 ~vdP~~TL~-~fL-R~k~~ltg---tKlgC~-EGGCGaCtv~ls~ 54 (1257)
T KOG0430|consen 16 LLPPDLTLN-TFL-REKLGLTG---TKLGCG-EGGCGACTVVLSK 54 (1257)
T ss_pred cCCcchhHH-HHH-HHhcCCcc---eeeccC-CCCccceEEEEec
Confidence 488899987 655 55566554 335698 7999999999864
No 82
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=31.67 E-value=71 Score=23.72 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=24.1
Q ss_pred EEEEEecCCCCCCCCccEEEEEecCCchHHHHHHHHCCCcc
Q 029369 58 IELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIEL 98 (194)
Q Consensus 58 I~v~f~~~~~~~dg~~~v~~v~v~~G~tLLr~aa~~~GI~l 98 (194)
|+|-|-.|+ ..+ ..++++++|.|+. +|+...|+.-
T Consensus 3 VeV~yA~p~----~q~-~~~l~vp~GtTv~-~Ai~~Sgi~~ 37 (84)
T PF03658_consen 3 VEVAYALPE----RQV-ILTLEVPEGTTVA-QAIEASGILE 37 (84)
T ss_dssp EEEEEEETT----CEE-EEEEEEETT-BHH-HHHHHHTHHH
T ss_pred EEEEEECCC----eEE-EEEEECCCcCcHH-HHHHHcCchh
Confidence 555555442 222 3578999999998 9999999863
No 83
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=20.74 E-value=47 Score=25.55 Aligned_cols=16 Identities=44% Similarity=0.665 Sum_probs=12.2
Q ss_pred CceeccCcEEEEcc-Cc
Q 029369 110 GGGSCGTCIVEIID-GK 125 (194)
Q Consensus 110 G~G~CGTC~V~V~~-G~ 125 (194)
|--.||||+|.... |.
T Consensus 66 gClECGTCRvlc~~~~~ 82 (99)
T COG2440 66 GCLECGTCRVLCPHSGL 82 (99)
T ss_pred CeeeccceeEecCCCcc
Confidence 34589999999876 44
Done!