BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029370
(194 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O48671|RER1B_ARATH Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2
Length = 195
Score = 295 bits (756), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 132/193 (68%), Positives = 162/193 (83%)
Query: 1 MEGPGADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQG 60
MEG G D+ S P+ K + R++QYYLD++TPH RWIGTL IY LRVY + G
Sbjct: 1 MEGSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHG 60
Query: 61 FYIVTYGLGIYILNLLIGFLSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAI 120
FYI++YGLGIY+LNLLIGFLSP +DPE E DGA+LPT+GSDEF+PFIRRLPEFKFWY++
Sbjct: 61 FYIISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSM 120
Query: 121 TKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYT 180
TKAFC+AFLMTFFS+FDVPVFWPILLCYW+VLFVLTM+RQ+ HMIK++YIPFS GKQKY+
Sbjct: 121 TKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQKYS 180
Query: 181 GKRSAASTSGSPR 193
G++S+A++ G R
Sbjct: 181 GRKSSANSGGGSR 193
>sp|O48670|RER1A_ARATH Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1
Length = 191
Score = 278 bits (712), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 130/190 (68%), Positives = 157/190 (82%), Gaps = 1/190 (0%)
Query: 1 MEGPGADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQG 60
M+ G D+ S P+ + + R++Q+YLD++TPH RWIGTL A IY LRVY +QG
Sbjct: 1 MDESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQG 60
Query: 61 FYIVTYGLGIYILNLLIGFLSPKIDPEFEAL-DGASLPTKGSDEFRPFIRRLPEFKFWYA 119
FYI+ YGLGIY+LNLLIGFLSP +DPE + DG SLPT+GSDEF+PFIRRLPEFKFWY+
Sbjct: 61 FYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYS 120
Query: 120 ITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKY 179
+TKAFC+AFLMTFFS+FDVPVFWPILLCYWIVLFVLTM+RQ+ HMIKY+YIPFSFGKQKY
Sbjct: 121 MTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQKY 180
Query: 180 TGKRSAASTS 189
G+ S+ S +
Sbjct: 181 GGRSSSGSRA 190
>sp|Q9ZPV7|RER1D_ARATH Protein RER1D OS=Arabidopsis thaliana GN=At2g18240 PE=2 SV=2
Length = 221
Score = 244 bits (623), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 115/175 (65%), Positives = 139/175 (79%), Gaps = 1/175 (0%)
Query: 3 GPGADAASAVA-PIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGF 61
G +A + VA P+AKWR +FS+ FQ YLDRS P+ ++RW+ TL AA IY+ RVY V G+
Sbjct: 6 GSENEADTIVASPLAKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVYGY 65
Query: 62 YIVTYGLGIYILNLLIGFLSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAIT 121
++++YGL YILNLLIGFLSPK+DPE EALD SLP SDE++PF+RRLPEFKFWYA T
Sbjct: 66 FVISYGLATYILNLLIGFLSPKVDPELEALDPDSLPVDESDEYKPFVRRLPEFKFWYAAT 125
Query: 122 KAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGK 176
KAF VAF+MTFFS DVPVFWPILLCYW+VL+ LTMKR ++HM KYRY PF K
Sbjct: 126 KAFVVAFVMTFFSFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDVRK 180
>sp|Q9ZWI7|RER1C_ARATH Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1
Length = 212
Score = 226 bits (576), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 103/170 (60%), Positives = 133/170 (78%), Gaps = 1/170 (0%)
Query: 22 FSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYGLGIYILNLLIGFLS 81
FS+ Q+ LD++ PH L RWI L IY++RVY V+GFYI+TY +GIY+LNL+I FLS
Sbjct: 44 FSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIYLLNLIIAFLS 103
Query: 82 PKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVF 141
P+ DPE G SLPT+ SDE+RPF+RRLPEFKFW +I +AF + F+MTFF +FDVPVF
Sbjct: 104 PQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIGFMMTFFEVFDVPVF 163
Query: 142 WPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYTGKRSAASTSGS 191
WPILL YW++LF LTM++Q+ HMIKYRY+PFSFGK++Y GK+ A + S
Sbjct: 164 WPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKKQY-GKKPAPTESSE 212
>sp|A5PJ65|RER1_BOVIN Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2
Length = 196
Score = 216 bits (549), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 107/194 (55%), Positives = 136/194 (70%), Gaps = 4/194 (2%)
Query: 2 EGPGADAASAVAPIAKWR--SDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQ 59
EG + P +R + +++Q +LD+STPH RW+ TL + IY++RVY +Q
Sbjct: 3 EGDSVGDSVHGKPSVVYRFFTRLGQIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLLQ 62
Query: 60 GFYIVTYGLGIYILNLLIGFLSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFW 117
G+YIVTY LGIY LNL I FLSPK+DP ++ DG SLPTK ++EFRPFIRRLPEFKFW
Sbjct: 63 GWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFW 122
Query: 118 YAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQ 177
+A TK VA + TFF F+VPVFWPIL+ Y+I+LF +TMKRQ+ HMIKYRYIPF+ GK+
Sbjct: 123 HAATKGILVAMVCTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKR 182
Query: 178 KYTGKRSAASTSGS 191
Y GK A S
Sbjct: 183 TYKGKEDAGKAFAS 196
>sp|Q498C8|RER1_RAT Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1
Length = 196
Score = 215 bits (547), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/194 (54%), Positives = 137/194 (70%), Gaps = 4/194 (2%)
Query: 2 EGPGADAASAVAPIAKWR--SDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQ 59
EG + P +R S +++Q +LD+STP+ RW+ TL + +Y++RVY +Q
Sbjct: 3 EGDSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQ 62
Query: 60 GFYIVTYGLGIYILNLLIGFLSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFW 117
G+YIVTY LGIY LNL I FLSPK+DP ++ DG SLPTK ++EFRPFIRRLPEFKFW
Sbjct: 63 GWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFW 122
Query: 118 YAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQ 177
+A TK VA + TFF F+VPVFWPIL+ Y+I+LF +TMKRQ+ HMIKYRYIPF+ GK+
Sbjct: 123 HAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKR 182
Query: 178 KYTGKRSAASTSGS 191
+Y GK T S
Sbjct: 183 RYKGKEDVGKTFAS 196
>sp|Q9CQU3|RER1_MOUSE Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1
Length = 196
Score = 215 bits (547), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/194 (54%), Positives = 137/194 (70%), Gaps = 4/194 (2%)
Query: 2 EGPGADAASAVAPIAKWR--SDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQ 59
EG + P +R S +++Q +LD+STP+ RW+ TL + +Y++RVY +Q
Sbjct: 3 EGDSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQ 62
Query: 60 GFYIVTYGLGIYILNLLIGFLSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFW 117
G+YIVTY LGIY LNL I FLSPK+DP ++ DG SLPTK ++EFRPFIRRLPEFKFW
Sbjct: 63 GWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFW 122
Query: 118 YAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQ 177
+A TK VA + TFF F+VPVFWPIL+ Y+I+LF +TMKRQ+ HMIKYRYIPF+ GK+
Sbjct: 123 HAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKR 182
Query: 178 KYTGKRSAASTSGS 191
+Y GK T S
Sbjct: 183 RYKGKEDVGKTFAS 196
>sp|Q5R5U4|RER1_PONAB Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1
Length = 196
Score = 213 bits (543), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 105/194 (54%), Positives = 137/194 (70%), Gaps = 4/194 (2%)
Query: 2 EGPGADAASAVAPIAKWR--SDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQ 59
EG + P +R + +++Q +LD+STP+ RW+ TL + +Y++RVY +Q
Sbjct: 3 EGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQ 62
Query: 60 GFYIVTYGLGIYILNLLIGFLSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFW 117
G+YIVTY LGIY LNL I FLSPK+DP ++ DG SLPTK ++EFRPFIRRLPEFKFW
Sbjct: 63 GWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFW 122
Query: 118 YAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQ 177
+A TK VA + TFF F+VPVFWPIL+ Y+I+LF +TMKRQ+ HMIKYRYIPF+ GK+
Sbjct: 123 HAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKR 182
Query: 178 KYTGKRSAASTSGS 191
+Y GK A S
Sbjct: 183 RYRGKEDAGKAFAS 196
>sp|O15258|RER1_HUMAN Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1
Length = 196
Score = 213 bits (543), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 105/194 (54%), Positives = 137/194 (70%), Gaps = 4/194 (2%)
Query: 2 EGPGADAASAVAPIAKWR--SDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQ 59
EG + P +R + +++Q +LD+STP+ RW+ TL + +Y++RVY +Q
Sbjct: 3 EGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQ 62
Query: 60 GFYIVTYGLGIYILNLLIGFLSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFW 117
G+YIVTY LGIY LNL I FLSPK+DP ++ DG SLPTK ++EFRPFIRRLPEFKFW
Sbjct: 63 GWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFW 122
Query: 118 YAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQ 177
+A TK VA + TFF F+VPVFWPIL+ Y+I+LF +TMKRQ+ HMIKYRYIPF+ GK+
Sbjct: 123 HAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKR 182
Query: 178 KYTGKRSAASTSGS 191
+Y GK A S
Sbjct: 183 RYRGKEDAGKAFAS 196
>sp|Q5ZHM5|RER1_CHICK Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1
Length = 196
Score = 213 bits (541), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 106/194 (54%), Positives = 136/194 (70%), Gaps = 4/194 (2%)
Query: 2 EGPGADAASAVAPIAKWR--SDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQ 59
EG + P +R + +++Q +LD+STP+ RWI TL + IY++RVY +Q
Sbjct: 3 EGDSIGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLLQ 62
Query: 60 GFYIVTYGLGIYILNLLIGFLSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFW 117
G+YIVTY LGIY LNL I FLSPK+DP ++ DG SLPT+ ++EFRPFIRRLPEFKFW
Sbjct: 63 GWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKFW 122
Query: 118 YAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQ 177
++ TK VA TFF F+VPVFWPIL+ Y+I+LF +TMKRQ+ HMIKYRYIPF+ GK+
Sbjct: 123 HSATKGILVAMACTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKR 182
Query: 178 KYTGKRSAASTSGS 191
KY GK T S
Sbjct: 183 KYKGKEDVGKTFAS 196
>sp|P79003|RER1_SACPS Protein RER1 OS=Saccharomyces pastorianus GN=RER1 PE=3 SV=1
Length = 188
Score = 178 bits (451), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 122/176 (69%), Gaps = 3/176 (1%)
Query: 7 DAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTY 66
+ AS+ A IAK S ++Q+YLD+ TPH QRW ++++R+ +G+Y++ Y
Sbjct: 10 NGASSNALIAKMNSA-KLLYQHYLDKVTPHAKQRWAVLGGLLCLFMVRITMAEGWYVICY 68
Query: 67 GLGIYILNLLIGFLSPKIDPEFEALDGASLPTKG--SDEFRPFIRRLPEFKFWYAITKAF 124
GLG+++LN + FL+PK D + + + G S+EFRPFIRRLPEFKFWY +A
Sbjct: 69 GLGLFLLNQFLAFLTPKFDMSLQQDEENNELEAGEKSEEFRPFIRRLPEFKFWYNSIRAT 128
Query: 125 CVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYT 180
++ +++ FSIFD+PVFWPILL Y+++LF LTM+RQ+ HM+KYRYIP GK+KY+
Sbjct: 129 VISLVLSLFSIFDIPVFWPILLMYFVLLFFLTMRRQIQHMMKYRYIPLDIGKKKYS 184
>sp|P25560|RER1_YEAST Protein RER1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=RER1 PE=1 SV=2
Length = 188
Score = 176 bits (445), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 81/184 (44%), Positives = 122/184 (66%), Gaps = 4/184 (2%)
Query: 1 MEGPGADAAS--AVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCV 58
M+ +D + + P+ + ++Q+YLD+ TPH +RW ++++R+
Sbjct: 1 MDYDSSDTMNGGSSNPLITKMNTMKLLYQHYLDKVTPHAKERWAVLGGLLCLFMVRITMA 60
Query: 59 QGFYIVTYGLGIYILNLLIGFLSPKIDPEFEALDGASLPTKG--SDEFRPFIRRLPEFKF 116
+G+Y++ YGLG+++LN + FL+PK D + + + G S+EFRPFIRRLPEFKF
Sbjct: 61 EGWYVICYGLGLFLLNQFLAFLTPKFDMSLQQDEENNELEAGEKSEEFRPFIRRLPEFKF 120
Query: 117 WYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGK 176
WY +A ++ L++ FSIFD+PVFWPILL Y+I+LF LTM+RQ+ HMIKYRYIP GK
Sbjct: 121 WYNSIRATVISLLLSLFSIFDIPVFWPILLMYFILLFFLTMRRQIQHMIKYRYIPLDIGK 180
Query: 177 QKYT 180
+KY+
Sbjct: 181 KKYS 184
>sp|P52879|RER1_CAEEL Protein RER1 homolog OS=Caenorhabditis elegans GN=rer-1 PE=3 SV=1
Length = 191
Score = 174 bits (442), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/166 (56%), Positives = 115/166 (69%), Gaps = 3/166 (1%)
Query: 26 FQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYGLGIYILNLLIGFLSPKID 85
+QYYLDR TPH RW+ L + + R+ +QGFYIV Y +GIY LNL + FL+P ID
Sbjct: 23 YQYYLDRLTPHTAFRWVIALISLVFFASRIILLQGFYIVAYAVGIYYLNLFLLFLTPSID 82
Query: 86 P--EFE-ALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFW 142
P EFE DG LP+K +DEFRPF+RRLPEFKFW++ KA +A TFF FDVPVFW
Sbjct: 83 PALEFEDEDDGPVLPSKTNDEFRPFMRRLPEFKFWHSFMKATLIAITCTFFEFFDVPVFW 142
Query: 143 PILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYTGKRSAAST 188
PIL+ Y+ +L LT+KRQ+MHMIKYRYIPF+ GK + GK
Sbjct: 143 PILVMYFFILTFLTLKRQIMHMIKYRYIPFTVGKPRMAGKEDTGKV 188
>sp|Q10358|RER1_SCHPO Protein rer1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rer1 PE=3 SV=1
Length = 184
Score = 170 bits (430), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 79/171 (46%), Positives = 116/171 (67%), Gaps = 7/171 (4%)
Query: 16 AKWRSDFS-RMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYGLGIYILN 74
K + +F+ R++++++DR+ P+ RW+ +++ +R+ V+G+YIV Y L IY+LN
Sbjct: 11 VKEKKNFAVRLYRHWVDRTIPYTTYRWLTVSGLIALFFIRILLVRGWYIVCYTLAIYLLN 70
Query: 75 LLIGFLSPKIDPEFE------ALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAF 128
L + FL+PK DP E ++ LPT DEFRPFIRRLPEFKFWY+ +A A
Sbjct: 71 LFLAFLTPKFDPSVEQAMKDEEIEEGVLPTSKDDEFRPFIRRLPEFKFWYSSMRATLFAL 130
Query: 129 LMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKY 179
+ +FF IFDVPVFWPIL+ Y++VL +RQ+ HM+KYRY+PF GK+K+
Sbjct: 131 VASFFRIFDVPVFWPILVVYYLVLSFFCFRRQIQHMLKYRYVPFDIGKKKF 181
>sp|Q54D10|RER1_DICDI Protein RER1 homolog OS=Dictyostelium discoideum GN=rer1 PE=3 SV=1
Length = 188
Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 110/166 (66%), Gaps = 4/166 (2%)
Query: 23 SRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQG-FYIVTYGLGIYILNLLIGFLS 81
+R +Q ++++ QRW + +Y+LRV G +Y++TY LGI++L I FLS
Sbjct: 23 ARKYQNLIEKTISFIPQRWAFVGFLSFLYILRVSLSSGGWYVITYALGIFLLTRFIAFLS 82
Query: 82 PKIDPEFEALDGASLPT---KGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDV 138
PK DPE E G SLPT + DE +PFIRRLPEF FW++I KA ++ TF D+
Sbjct: 83 PKWDPELEEDSGDSLPTTLNRNDDEAKPFIRRLPEFLFWHSIFKALFISIFCTFIPFLDL 142
Query: 139 PVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYTGKRS 184
PVFWPILL Y+I++F +TMK+Q+ HMIKY+YIPF+ GK+ YT S
Sbjct: 143 PVFWPILLLYFIIIFSVTMKKQIKHMIKYKYIPFTVGKKTYTKNNS 188
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.143 0.468
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,648,239
Number of Sequences: 539616
Number of extensions: 2860829
Number of successful extensions: 6843
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6814
Number of HSP's gapped (non-prelim): 18
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.9 bits)