Query 029370
Match_columns 194
No_of_seqs 118 out of 239
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 11:50:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1688 Golgi proteins involve 100.0 2.6E-91 5.7E-96 581.3 16.2 182 3-184 5-187 (188)
2 PF03248 Rer1: Rer1 family; I 100.0 2.4E-88 5.3E-93 563.9 17.8 168 15-182 2-176 (176)
3 COG5249 RER1 Golgi protein inv 100.0 1.3E-75 2.9E-80 479.6 14.3 168 14-181 10-179 (180)
4 PF09973 DUF2208: Predicted me 85.5 1.7 3.6E-05 38.4 5.1 43 119-165 7-49 (233)
5 PF13260 DUF4051: Protein of u 82.0 1.8 3.9E-05 30.3 3.1 22 146-167 4-25 (54)
6 CHL00161 secY preprotein trans 54.6 24 0.00053 33.1 5.1 112 59-173 295-416 (417)
7 PF06703 SPC25: Microsomal sig 42.5 47 0.001 26.8 4.4 40 120-159 33-77 (162)
8 PF12273 RCR: Chitin synthesis 31.2 22 0.00048 27.8 0.8 13 40-52 1-13 (130)
9 TIGR03097 PEP_O_lig_1 probable 31.1 1E+02 0.0022 28.3 5.2 59 108-166 69-130 (402)
10 PF12273 RCR: Chitin synthesis 30.6 70 0.0015 25.0 3.5 18 141-158 4-21 (130)
11 PRK14475 F0F1 ATP synthase sub 27.7 85 0.0019 25.5 3.7 13 131-144 3-15 (167)
12 PF03253 UT: Urea transporter; 27.5 1.1E+02 0.0025 27.6 4.8 48 115-168 249-301 (301)
13 PRK12907 secY preprotein trans 25.6 78 0.0017 30.2 3.5 110 59-173 309-430 (434)
14 KOG3827 Inward rectifier K+ ch 25.5 44 0.00095 32.1 1.8 47 18-69 46-92 (400)
15 PF14800 DUF4481: Domain of un 25.1 56 0.0012 30.4 2.4 44 79-125 15-68 (308)
16 PHA00736 hypothetical protein 24.6 50 0.0011 24.7 1.6 27 123-149 38-66 (79)
17 PF12387 Peptidase_C74: Pestiv 24.5 1.9E+02 0.004 25.3 5.2 51 95-161 25-75 (200)
18 PRK06531 yajC preprotein trans 22.4 65 0.0014 25.6 2.0 30 137-168 2-31 (113)
19 PRK05886 yajC preprotein trans 22.3 84 0.0018 24.9 2.6 28 140-168 6-33 (109)
20 PF07330 DUF1467: Protein of u 22.2 3.3E+02 0.0072 20.6 5.7 37 87-130 27-63 (85)
21 COG0817 RuvC Holliday junction 21.7 52 0.0011 27.9 1.3 35 133-167 91-125 (160)
22 KOG2887 Membrane protein invol 20.9 3.5E+02 0.0075 23.3 6.2 25 141-165 80-106 (175)
23 PRK09204 secY preprotein trans 20.1 2.1E+02 0.0045 27.1 5.2 110 59-172 307-425 (426)
No 1
>KOG1688 consensus Golgi proteins involved in ER retention (RER) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-91 Score=581.30 Aligned_cols=182 Identities=63% Similarity=1.159 Sum_probs=176.1
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHhheeccEEEehhhHHHHHHHHHHhhcCC
Q 029370 3 GPGADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYGLGIYILNLLIGFLSP 82 (194)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~l~~lf~~Rv~~~~g~YiVtY~LgIylLnlfi~FLtP 82 (194)
+.+++++++++|+.++.+++++.||+||||+|||+..||+++++++++|++||+..|||||||||||||+||+||+||||
T Consensus 5 ~~~~~~~~~a~~v~~~~~~~~~~yQ~yLDr~tPh~~~RW~~tl~l~~iy~iRi~~~~G~YII~Y~LgIYlLNlfiaFLtP 84 (188)
T KOG1688|consen 5 SSGEDSGGVASPVKRFFHELSQLYQHYLDRSTPHTAVRWVVTLVLLLIYCIRIYLVQGFYIITYALGIYLLNLFIAFLTP 84 (188)
T ss_pred ccCCCCCCcchHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 44667778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccc-cccCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHH
Q 029370 83 KIDPEFE-ALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQM 161 (194)
Q Consensus 83 k~Dp~l~-~edg~~Lp~~~~dEFrPFiRRLPEFkFW~~~tra~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~lTm~rqI 161 (194)
|+|||+| ++||+.||+++|||||||||||||||||+++|||+++|+.||||++||||||||||++||++||++||||||
T Consensus 85 k~Dp~~~~~~dg~~Lpt~~~dEFrPFIRRLPEFKFW~s~~ka~~ia~~~tfF~~fdVPVFwPILl~Y~i~lf~ltmrRqI 164 (188)
T KOG1688|consen 85 KVDPELQDADDGPSLPTRKSDEFRPFIRRLPEFKFWYSSTKATLIALLCTFFSIFDVPVFWPILLMYFIVLFFLTMRRQI 164 (188)
T ss_pred CCCchhhcccCCCCCCCCCccccchHHHcCchhHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999996 479999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccccCCcCcccccCCCC
Q 029370 162 MHMIKYRYIPFSFGKQKYTGKRS 184 (194)
Q Consensus 162 ~HMiKy~YvPf~~gK~~y~~~~~ 184 (194)
+|||||||+||++||++|+++++
T Consensus 165 ~HMiKyrY~Pf~~gK~~~~~~~~ 187 (188)
T KOG1688|consen 165 AHMIKYRYIPFDIGKKKYGSHSD 187 (188)
T ss_pred HHHHhhcccccccCchhhhcccc
Confidence 99999999999999999988764
No 2
>PF03248 Rer1: Rer1 family; InterPro: IPR004932 RER1 family proteins are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex [].; GO: 0016021 integral to membrane
Probab=100.00 E-value=2.4e-88 Score=563.94 Aligned_cols=168 Identities=62% Similarity=1.174 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHhheeccEEEehhhHHHHHHHHHHhhcCCCCCccccc----
Q 029370 15 IAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYGLGIYILNLLIGFLSPKIDPEFEA---- 90 (194)
Q Consensus 15 ~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~l~~lf~~Rv~~~~g~YiVtY~LgIylLnlfi~FLtPk~Dp~l~~---- 90 (194)
++++.++++++||++|||||||++.||+++++|+++|++||+..|||||||||||||+||+||+|||||+||++++
T Consensus 2 ~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~~Rv~~~~g~YiVtY~LgIylLnlfi~FltP~~Dp~l~~~~~~ 81 (176)
T PF03248_consen 2 VSRFFQKLKRTYQSYLDKSTPYTKYRWIAFLVLLFLFLLRVYYLQGWYIVTYALGIYLLNLFIAFLTPKFDPELEQDEED 81 (176)
T ss_pred HHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhcceeeehHHHHHHHHHHHHHHhCCcCcccccccccc
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999983
Q ss_pred -ccCCCCCC--CCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029370 91 -LDGASLPT--KGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKY 167 (194)
Q Consensus 91 -edg~~Lp~--~~~dEFrPFiRRLPEFkFW~~~tra~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~lTm~rqI~HMiKy 167 (194)
|||+.||+ +++||||||+|||||||||++||||+++|++||||++||||||||||++|||+||++||||||+|||||
T Consensus 82 ~~~g~~Lp~~~~~~~EFrPFiRRlPEFkFW~~~tka~~i~~~~tff~~fdiPVFWPiLl~Yfi~lf~~tm~~qI~hMiKy 161 (176)
T PF03248_consen 82 EEEGPELPTTNENDDEFRPFIRRLPEFKFWYSCTKATVISLFCTFFPFFDIPVFWPILLVYFIVLFVLTMKRQIKHMIKY 161 (176)
T ss_pred ccccccCCCCcccccccCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcCcccccCC
Q 029370 168 RYIPFSFGKQKYTGK 182 (194)
Q Consensus 168 ~YvPf~~gK~~y~~~ 182 (194)
||+|||+||++|++|
T Consensus 162 ~Y~Pf~~gK~~y~~~ 176 (176)
T PF03248_consen 162 RYVPFDFGKKKYGRK 176 (176)
T ss_pred CCCCccccchhccCC
Confidence 999999999999986
No 3
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.3e-75 Score=479.61 Aligned_cols=168 Identities=46% Similarity=0.898 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHhheeccEEEehhhHHHHHHHHHHhhcCCCCCccccc-cc
Q 029370 14 PIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYGLGIYILNLLIGFLSPKIDPEFEA-LD 92 (194)
Q Consensus 14 ~~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~l~~lf~~Rv~~~~g~YiVtY~LgIylLnlfi~FLtPk~Dp~l~~-ed 92 (194)
.+.+..+.+++.||+||||.+||+..||..+++|+++|++||+..+|||+|||+||||+||+|++|||||+||+.|+ ||
T Consensus 10 n~~~k~n~~k~LyqhylDr~~P~~~~RW~i~ggL~~lf~iRI~~~~gwY~icY~LgiyLLn~flaFLTPKfdms~eq~e~ 89 (180)
T COG5249 10 NLITKMNDLKTLYQHYLDRLAPRPDVRWGITGGLFLLFCIRIWSTGGWYLICYCLGIYLLNAFLAFLTPKFDMSFEQIED 89 (180)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhCCCCcccHhhhcc
Confidence 35567889999999999999999999999999999999999999999999999999999999999999999999984 34
Q ss_pred CC-CCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 029370 93 GA-SLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIP 171 (194)
Q Consensus 93 g~-~Lp~~~~dEFrPFiRRLPEFkFW~~~tra~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~lTm~rqI~HMiKy~YvP 171 (194)
++ ...++.|+|||||||||||||||+++|||+++|++.|+|++||||||||||++|||+|+..|||||||||+||||+|
T Consensus 90 d~eieeg~kd~EFrPFIRrLPEFkFWy~s~rat~~aLi~s~F~IfDvPVfwPILvvYfi~l~f~t~rRqIqHM~KYrY~P 169 (180)
T COG5249 90 DDEIEEGEKDNEFRPFIRRLPEFKFWYFSTRATGMALIGSYFGIFDVPVFWPILVVYFIFLVFYTARRQIQHMKKYRYNP 169 (180)
T ss_pred ccccccccccchhhHHHHcCchhHHHHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 43 44446899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccccC
Q 029370 172 FSFGKQKYTG 181 (194)
Q Consensus 172 f~~gK~~y~~ 181 (194)
|++||++|++
T Consensus 170 fdigKkky~s 179 (180)
T COG5249 170 FDIGKKKYKS 179 (180)
T ss_pred hhhhhhhhcc
Confidence 9999999975
No 4
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=85.46 E-value=1.7 Score=38.45 Aligned_cols=43 Identities=16% Similarity=0.461 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 029370 119 AITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMI 165 (194)
Q Consensus 119 ~~tra~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~lTm~rqI~HMi 165 (194)
+.+-.+++|++++|++.- ||++.+.||++.+++||.-.++++-
T Consensus 7 sq~~il~fa~Vla~~p~y----~~~~filYfiv~~~i~~~~~~Rs~r 49 (233)
T PF09973_consen 7 SQVSILLFAAVLAFFPQY----YFEVFILYFIVFFGIMIVMGIRSYR 49 (233)
T ss_pred HHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 445567888898877533 6899999999999999998888876
No 5
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=82.02 E-value=1.8 Score=30.34 Aligned_cols=22 Identities=45% Similarity=0.851 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 029370 146 LCYWIVLFVLTMKRQMMHMIKY 167 (194)
Q Consensus 146 l~Yfi~Lf~lTm~rqI~HMiKy 167 (194)
.-|||+|-++..-..+-||.+|
T Consensus 4 awywivli~lv~~gy~~hmkry 25 (54)
T PF13260_consen 4 AWYWIVLIVLVVVGYFCHMKRY 25 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999999999999999988
No 6
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=54.58 E-value=24 Score=33.14 Aligned_cols=112 Identities=15% Similarity=0.237 Sum_probs=60.0
Q ss_pred ccEEEehhhHHHHHHHHHHhhcCCCCCccccc----ccCCCCCCCCCC-CCCCcccC-CchhHHHHHHHHHHHHHHHHHh
Q 029370 59 QGFYIVTYGLGIYILNLLIGFLSPKIDPEFEA----LDGASLPTKGSD-EFRPFIRR-LPEFKFWYAITKAFCVAFLMTF 132 (194)
Q Consensus 59 ~g~YiVtY~LgIylLnlfi~FLtPk~Dp~l~~----edg~~Lp~~~~d-EFrPFiRR-LPEFkFW~~~tra~~ia~~~Tf 132 (194)
..+|+++|.+-+.+++-|-.+++ +||+... +.|...|.-+.. +=.-+++| +|-..+|=++ -..++|.++.+
T Consensus 295 ~~~y~~~y~~lii~Fs~f~~~i~--~~p~~iA~~Lkk~g~~IpGvRpG~~T~~yL~~~i~~~t~~Ga~-~l~~la~~p~l 371 (417)
T CHL00161 295 KILYLVLYFVLILFFSYFYSTIV--LNPKDISENLQKMAVSIPGIRPGKATTKYLKKTLNRLTLLGAL-FLAFIALLPNL 371 (417)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHhHH-HHHHHHHHHHH
Confidence 55688999999999999988887 8997652 356666664433 21222222 2333333222 23334444444
Q ss_pred hc-cccccchh---HHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 029370 133 FS-IFDVPVFW---PILLCYWIVLFVLTMKRQMMHMIKYRYIPFS 173 (194)
Q Consensus 133 f~-~fDiPVfW---PiLl~Yfi~Lf~lTm~rqI~HMiKy~YvPf~ 173 (194)
++ .++++++. +.=++=.+..-.=|+++-=.|+.+.+|-+|.
T Consensus 372 ~~~~~~~~~~~~~ggtslLI~Vgv~~~~~~qi~a~~~~~~Y~~~~ 416 (417)
T CHL00161 372 IESVLNLSVFKGLGTTSLLILVGVAIDTSRQIQTYLISNNYENMY 416 (417)
T ss_pred HHHhcCcccccccchhhhhhhHHHHHHHHHHHHHHHHHHhhcccc
Confidence 53 33566444 2111112222223444444577888887763
No 7
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=42.45 E-value=47 Score=26.77 Aligned_cols=40 Identities=20% Similarity=0.212 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhhcc-----ccccchhHHHHHHHHHHHHHHHHH
Q 029370 120 ITKAFCVAFLMTFFSI-----FDVPVFWPILLCYWIVLFVLTMKR 159 (194)
Q Consensus 120 ~tra~~ia~~~Tff~~-----fDiPVfWPiLl~Yfi~Lf~lTm~r 159 (194)
++-++++|.++.+++. -+-|+-+...+.||++..++|.-.
T Consensus 33 g~~a~~iA~~a~~~d~~~~f~~s~~~~~~~v~~YfiLs~il~~~~ 77 (162)
T PF06703_consen 33 GYLAVIIAGFAFFYDYKYPFPESKPYLIICVILYFILSGILTLYS 77 (162)
T ss_pred HHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777778888765 347888999999999998888744
No 8
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=31.18 E-value=22 Score=27.83 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHH
Q 029370 40 RWIGTLAAASIYL 52 (194)
Q Consensus 40 RW~~~~~l~~lf~ 52 (194)
||+++++++++++
T Consensus 1 RW~l~~iii~~i~ 13 (130)
T PF12273_consen 1 RWVLFAIIIVAIL 13 (130)
T ss_pred CeeeHHHHHHHHH
Confidence 8988887776554
No 9
>TIGR03097 PEP_O_lig_1 probable O-glycosylation ligase, exosortase system type 1-associated. These proteins are members of the O-antigen polymerase (wzy) family described by Pfam model pfam04932. This group is associated with genomes and ususally genomic contexts containing elements of the exosortase/PEP-CTERM protein export system, specificially the type 1 variety of this system described by the Genome Property, GenProp0652.
Probab=31.09 E-value=1e+02 Score=28.25 Aligned_cols=59 Identities=17% Similarity=0.243 Sum_probs=38.7
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhcccccc---chhHHHHHHHHHHHHHHHHHHHHHHhh
Q 029370 108 IRRLPEFKFWYAITKAFCVAFLMTFFSIFDVP---VFWPILLCYWIVLFVLTMKRQMMHMIK 166 (194)
Q Consensus 108 iRRLPEFkFW~~~tra~~ia~~~Tff~~fDiP---VfWPiLl~Yfi~Lf~lTm~rqI~HMiK 166 (194)
++.-|+.++..-..-.++++.+-+..+-...+ .+|+++++++++..+++-|++++.+..
T Consensus 69 ~~~~~~~~~lllf~~~~~ls~l~s~~~~~s~~~~~~~~~~~l~~~~~~~l~~~~~~l~~l~~ 130 (402)
T TIGR03097 69 IPWTPEVIFLLLLTIWMTVTTFFAFDPDVAFVQWDKVMKIFLMVLVTLMLISDRQRLHWLLW 130 (402)
T ss_pred CCCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 45677877766544444444433322222233 568999999999988899999988765
No 10
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=30.63 E-value=70 Score=24.99 Aligned_cols=18 Identities=11% Similarity=0.353 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 029370 141 FWPILLCYWIVLFVLTMK 158 (194)
Q Consensus 141 fWPiLl~Yfi~Lf~lTm~ 158 (194)
+|=|+++-++++++++++
T Consensus 4 l~~iii~~i~l~~~~~~~ 21 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYC 21 (130)
T ss_pred eHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 11
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=27.66 E-value=85 Score=25.49 Aligned_cols=13 Identities=38% Similarity=0.955 Sum_probs=8.0
Q ss_pred HhhccccccchhHH
Q 029370 131 TFFSIFDVPVFWPI 144 (194)
Q Consensus 131 Tff~~fDiPVfWPi 144 (194)
|||+ ++.|.||-+
T Consensus 3 ~~~~-~~~~~~w~~ 15 (167)
T PRK14475 3 SFFN-LSNPEFWVG 15 (167)
T ss_pred CCCC-CCchHHHHH
Confidence 4555 557888843
No 12
>PF03253 UT: Urea transporter; InterPro: IPR004937 Proteins in this entry include low-affinity urea transporters found in the erythrocytes and kidneys of higher organisms. The erythrocyte proteins carry the clinically important Kidd (Jk) blood group antigens which help determine blood type. The two commonest forms are Jk(a) and Jk(b), which arise from a single residue variation at position 280; aspartate in Jk(a) and asparagine in Jk(b) []. A much rarer phenotype, Jk(null), arises when the protein is not expressed on the erythrocyte surface, and is linked to a urine-concentrating defect []. The Kidd blood group is clinically significant as Jk antibodies can cause acute transfusion reactions and haemolytic disease of the newborn (HDN), where the mother's body creates antibodies against the foetal blood cells. HDN associated with Jk antibodies is generally mild, but fatal cases can occur []. The bacterial proteins in this entry also appear to be involved in urea transport, promoting its entry into the cell []. This uptake of urea can be advantageous for bacteria as its hydrolysis by urease generates ammonium which is an efficient source of nitrogen and, through its buffering capacity, can also provide resistance to acidic conditions.; GO: 0015204 urea transmembrane transporter activity, 0071918 urea transmembrane transport, 0016021 integral to membrane; PDB: 3M6E_A 3K3G_A 3ME1_B 3K3F_A.
Probab=27.49 E-value=1.1e+02 Score=27.60 Aligned_cols=48 Identities=29% Similarity=0.614 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHH----HHHhhccccccch-hHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 029370 115 KFWYAITKAFCVAF----LMTFFSIFDVPVF-WPILLCYWIVLFVLTMKRQMMHMIKYR 168 (194)
Q Consensus 115 kFW~~~tra~~ia~----~~Tff~~fDiPVf-WPiLl~Yfi~Lf~lTm~rqI~HMiKy~ 168 (194)
.+++....+++-.+ +.+++.-+.+|++ ||..+.=|+++. +-+|+.|||
T Consensus 249 ~~~~al~g~~lsv~i~~a~~~~l~~~glP~lT~PFvl~tw~~l~------~~~~~~~~~ 301 (301)
T PF03253_consen 249 SYLYALLGAVLSVLIQLALSTFLAPLGLPALTAPFVLATWLLLL------AGKKFKKYR 301 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCT---TTHHHHHHHHHHHH------HHTT-TT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHhhhHHHHHHHHHHHH------hcccccccC
Confidence 45666555444333 3345558899999 998777775444 345666665
No 13
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=25.62 E-value=78 Score=30.22 Aligned_cols=110 Identities=18% Similarity=0.249 Sum_probs=59.3
Q ss_pred ccEEEehhhHHHHHHHHHHhhcCCCCCccccc----ccCCCCCCCCC-CCCCCcccC-CchhHHHHHHHHHHHHHHHHHh
Q 029370 59 QGFYIVTYGLGIYILNLLIGFLSPKIDPEFEA----LDGASLPTKGS-DEFRPFIRR-LPEFKFWYAITKAFCVAFLMTF 132 (194)
Q Consensus 59 ~g~YiVtY~LgIylLnlfi~FLtPk~Dp~l~~----edg~~Lp~~~~-dEFrPFiRR-LPEFkFW~~~tra~~ia~~~Tf 132 (194)
+.+|.+.|++-|.+.+-|-.++. +||+... +.|...|.-+. +|=+-+++| ++...++ .+.-..++|.+.++
T Consensus 309 ~~~~~~~y~~lii~Fs~fyt~i~--~nP~~iAenL~k~G~~IPGiRPGk~T~~yL~~~i~rlt~~-Gai~L~~ia~lP~i 385 (434)
T PRK12907 309 HPIGMTLYVGLIVAFTYFYAFIQ--VNPEQMAENLKKQNGYVPGIRPGKSTEQYVTKILYRLTFI-GAIFLGAISILPLV 385 (434)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHc--cCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHH-hHHHHHHHHHHHHH
Confidence 44567789888888888888775 8997652 34656666432 222233333 2223332 23333444445454
Q ss_pred h-ccccccch-----hHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 029370 133 F-SIFDVPVF-----WPILLCYWIVLFVLTMKRQMMHMIKYRYIPFS 173 (194)
Q Consensus 133 f-~~fDiPVf-----WPiLl~Yfi~Lf~lTm~rqI~HMiKy~YvPf~ 173 (194)
. ..+.+|.+ --+|.+ +..-.=|+++-=.|+...+|-+|-
T Consensus 386 ~~~~~~~~~~~~~gGTslLI~--VgV~ldt~~qi~s~l~~~~Y~~~~ 430 (434)
T PRK12907 386 FTKIATLPPSAQIGGTSLLII--VGVALETMKTLESQLVKRHYKGFI 430 (434)
T ss_pred HHHHhCCCcccccchhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 33455532 223332 222333455555688888998873
No 14
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=25.51 E-value=44 Score=32.06 Aligned_cols=47 Identities=17% Similarity=0.318 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHhheeccEEEehhhHH
Q 029370 18 WRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYGLG 69 (194)
Q Consensus 18 ~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~l~~lf~~Rv~~~~g~YiVtY~Lg 69 (194)
..+=++..+-.++| .+.||..+++.+...+-=.++.--||+|+|+-|
T Consensus 46 ~~rYl~DifTTlVD-----~kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hG 92 (400)
T KOG3827|consen 46 RLRYLQDIFTTLVD-----LKWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHG 92 (400)
T ss_pred HHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33344445555556 678888777766543333444445677777654
No 15
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=25.10 E-value=56 Score=30.35 Aligned_cols=44 Identities=18% Similarity=0.487 Sum_probs=25.3
Q ss_pred hcCCCCCccccc----ccCCCCCCCCCCCCCCcccC-Cch-----hHHHHHHHHHHH
Q 029370 79 FLSPKIDPEFEA----LDGASLPTKGSDEFRPFIRR-LPE-----FKFWYAITKAFC 125 (194)
Q Consensus 79 FLtPk~Dp~l~~----edg~~Lp~~~~dEFrPFiRR-LPE-----FkFW~~~tra~~ 125 (194)
.+||+|||++-. ..|-.+|. |||+--+.. +.+ |.+|.+|-+-+.
T Consensus 15 ~~tp~F~~e~~~E~L~a~Glqlp~---e~y~~~~E~al~~p~VRRy~~yNs~~fr~~ 68 (308)
T PF14800_consen 15 WCTPSFDPELCPEELMAQGLQLPV---EDYVHLMESALLDPQVRRYTLYNSRYFRLL 68 (308)
T ss_pred eecCccChhhCHHHHHhhCccccH---HHHHHHHHHhccchhheeeeeecchHHHHH
Confidence 679999999863 25766776 344422211 111 667776655443
No 16
>PHA00736 hypothetical protein
Probab=24.61 E-value=50 Score=24.69 Aligned_cols=27 Identities=33% Similarity=0.642 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhc-ccc-ccchhHHHHHHH
Q 029370 123 AFCVAFLMTFFS-IFD-VPVFWPILLCYW 149 (194)
Q Consensus 123 a~~ia~~~Tff~-~fD-iPVfWPiLl~Yf 149 (194)
|++.++..||-- ++| +|+||-|-+++=
T Consensus 38 aii~giastf~lmfmdflplfwgi~vifg 66 (79)
T PHA00736 38 AILVGIASTFTLMFMDFLPLFWGITVIFG 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444322 233 899999987653
No 17
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=24.48 E-value=1.9e+02 Score=25.33 Aligned_cols=51 Identities=16% Similarity=0.301 Sum_probs=37.4
Q ss_pred CCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHH
Q 029370 95 SLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQM 161 (194)
Q Consensus 95 ~Lp~~~~dEFrPFiRRLPEFkFW~~~tra~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~lTm~rqI 161 (194)
++|+++...+. +.+=...+||++||.+.+-+. ++.++|.++=+..-|.|.|
T Consensus 25 lfPS~qk~~~~--------~~~~lpllra~LIsCiSS~Wq--------~~Yl~yL~ie~~Yy~H~kI 75 (200)
T PF12387_consen 25 LFPSRQKGGSC--------TGFLLPLLRAILISCISSKWQ--------CFYLLYLIIELSYYMHRKI 75 (200)
T ss_pred EccccccCCCC--------ccchHHHHHHHHHHHHhhhhH--------HHHHHHHHHHHHHHHHHHH
Confidence 57777644332 223456789999999988766 5888999988888887765
No 18
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=22.43 E-value=65 Score=25.60 Aligned_cols=30 Identities=10% Similarity=0.270 Sum_probs=15.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 029370 137 DVPVFWPILLCYWIVLFVLTMKRQMMHMIKYR 168 (194)
Q Consensus 137 DiPVfWPiLl~Yfi~Lf~lTm~rqI~HMiKy~ 168 (194)
|++.++|+.+++-++ | +..|.|-|-+.+|+
T Consensus 2 ~~~~il~~vv~~~i~-y-f~iRPQkKr~Ke~~ 31 (113)
T PRK06531 2 GIPTIIMFVVMLGLI-F-FMQRQQKKQAQERQ 31 (113)
T ss_pred chHHHHHHHHHHHHH-H-heechHHHHHHHHH
Confidence 455565554443332 2 23666666665553
No 19
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=22.27 E-value=84 Score=24.86 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=15.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 029370 140 VFWPILLCYWIVLFVLTMKRQMMHMIKYR 168 (194)
Q Consensus 140 VfWPiLl~Yfi~Lf~lTm~rqI~HMiKy~ 168 (194)
.+.|++++..+ ++++.+|.|-|-+.+++
T Consensus 6 ~ll~lv~i~~i-~yF~~iRPQkKr~K~~~ 33 (109)
T PRK05886 6 LFLPFLLIMGG-FMYFASRRQRKAMQATI 33 (109)
T ss_pred HHHHHHHHHHH-HHHHHccHHHHHHHHHH
Confidence 44566655444 33444677766555553
No 20
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=22.20 E-value=3.3e+02 Score=20.57 Aligned_cols=37 Identities=11% Similarity=0.142 Sum_probs=21.9
Q ss_pred ccccccCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHH
Q 029370 87 EFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLM 130 (194)
Q Consensus 87 ~l~~edg~~Lp~~~~dEFrPFiRRLPEFkFW~~~tra~~ia~~~ 130 (194)
..|+|+|+..|..+.. -| -.++.+..+..+|++|.+.
T Consensus 27 rtq~E~g~vv~Gt~~s--AP-----~~~~l~rk~~~TTiiaavi 63 (85)
T PF07330_consen 27 RTQDEAGEVVPGTDPS--AP-----ANPRLKRKALITTIIAAVI 63 (85)
T ss_pred cccCcCCCcCCCCCCC--CC-----CCchHHHHHHHHHHHHHHH
Confidence 3445667666664432 23 3456677777777777763
No 21
>COG0817 RuvC Holliday junction resolvasome, endonuclease subunit [DNA replication, recombination, and repair]
Probab=21.70 E-value=52 Score=27.88 Aligned_cols=35 Identities=23% Similarity=0.022 Sum_probs=20.1
Q ss_pred hccccccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029370 133 FSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKY 167 (194)
Q Consensus 133 f~~fDiPVfWPiLl~Yfi~Lf~lTm~rqI~HMiKy 167 (194)
-.-+++..|-|-.+==-++=..=.=|+||+||+|.
T Consensus 91 ~~~l~v~eY~p~~VKkavvG~G~A~K~QVq~MV~~ 125 (160)
T COG0817 91 RRGLPVFEYTPNQVKKAVVGNGKADKEQVQHMVKR 125 (160)
T ss_pred HcCCChhhccHHHHHHHhhcCCcccHHHHHHHHHH
Confidence 34344455567554333333333348999999985
No 22
>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.95 E-value=3.5e+02 Score=23.34 Aligned_cols=25 Identities=24% Similarity=0.277 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHH--HHHHHHHh
Q 029370 141 FWPILLCYWIVLFVLTM--KRQMMHMI 165 (194)
Q Consensus 141 fWPiLl~Yfi~Lf~lTm--~rqI~HMi 165 (194)
+|-+=-+-++.-|+..| ++|++||-
T Consensus 80 ~~TlGnll~i~sf~fLmGP~~ql~~m~ 106 (175)
T KOG2887|consen 80 LYTLGNLLAIGSFAFLMGPVSQLKHMF 106 (175)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 36555566777777777 79999995
No 23
>PRK09204 secY preprotein translocase subunit SecY; Reviewed
Probab=20.13 E-value=2.1e+02 Score=27.12 Aligned_cols=110 Identities=19% Similarity=0.341 Sum_probs=56.4
Q ss_pred ccEEEehhhHHHHHHHHHHhhcCCCCCccccc----ccCCCCCCCCC-CCCCCcccC-CchhHHHHHHHHHHHHHHHHHh
Q 029370 59 QGFYIVTYGLGIYILNLLIGFLSPKIDPEFEA----LDGASLPTKGS-DEFRPFIRR-LPEFKFWYAITKAFCVAFLMTF 132 (194)
Q Consensus 59 ~g~YiVtY~LgIylLnlfi~FLtPk~Dp~l~~----edg~~Lp~~~~-dEFrPFiRR-LPEFkFW~~~tra~~ia~~~Tf 132 (194)
+-.|++.|.+-|.+.+-|-.+++ +||+... +.|...|.-+. ++=+-+++| +|-..++ .+.-..++|.+..+
T Consensus 307 ~~~~~~~y~~lii~Fs~fy~~i~--~~p~~iAe~l~k~g~~IpGiRpG~~T~~yL~~~i~r~t~~-Ga~~l~~ia~~p~~ 383 (426)
T PRK09204 307 SPLYILLYALLIIFFTFFYTAIQ--FNPEEIAENLKKSGGFIPGIRPGEQTAEYLDKVLTRLTLV-GAIYLAFIALLPEI 383 (426)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHCCCcccCCCCChhHHHHHHHHHHHHHHH-hHHHHHHHHHHHHH
Confidence 44578899888888888888887 8887652 35666666443 222223322 3333333 33333344444444
Q ss_pred hccc-cccchh-HHHHHHHHHHHHHHHHHHHH-HHhhhccccC
Q 029370 133 FSIF-DVPVFW-PILLCYWIVLFVLTMKRQMM-HMIKYRYIPF 172 (194)
Q Consensus 133 f~~f-DiPVfW-PiLl~Yfi~Lf~lTm~rqI~-HMiKy~YvPf 172 (194)
+..+ +++..- +.=+ --++-..+...|||+ |+...+|-+|
T Consensus 384 ~~~~~~~~~~~ggTsl-LI~Vgv~l~~~~qi~~~~~~~~Y~~~ 425 (426)
T PRK09204 384 LQNALGVPFYFGGTSL-LIVVGVALDTMKQIESQLMSRQYEGF 425 (426)
T ss_pred HHHHcCcccccchHHH-HHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4322 332211 1111 112233333455554 6677777654
Done!