Query 029370
Match_columns 194
No_of_seqs 118 out of 239
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 19:23:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029370.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029370hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3owt_C Regulatory protein SIR3 34.9 12 0.00042 21.9 0.8 15 18-32 13-27 (27)
2 2rdd_B UPF0092 membrane protei 31.2 55 0.0019 19.9 3.4 27 141-168 6-32 (37)
3 3r84_A Mediator of RNA polymer 29.8 29 0.001 25.4 2.3 24 154-177 60-86 (86)
4 3j01_A Preprotein translocase 27.1 1.3E+02 0.0044 27.4 6.6 106 60-173 308-426 (435)
5 3k3f_A UREA transporter; membr 21.9 75 0.0026 28.1 3.9 23 132-154 287-310 (340)
6 3din_C Preprotein translocase 21.6 1.4E+02 0.0047 27.2 5.6 108 60-173 304-422 (431)
7 3dl8_G Preprotein translocase 15.2 1.1E+02 0.0039 27.7 3.5 106 60-172 309-426 (429)
8 1v74_A Colicin D; colicin D - 13.2 83 0.0028 24.0 1.7 12 158-169 12-23 (107)
9 2hac_A T-cell surface glycopro 11.1 1.8E+02 0.0061 17.9 2.4 19 143-161 10-28 (33)
10 2pif_A UPF0317 protein pspto_5 10.7 32 0.0011 30.2 -1.5 6 138-143 226-231 (276)
No 1
>3owt_C Regulatory protein SIR3; RCT domain, protein binding; 2.00A {Saccharomyces cerevisiae}
Probab=34.89 E-value=12 Score=21.86 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhhc
Q 029370 18 WRSDFSRMFQYYLDR 32 (194)
Q Consensus 18 ~~~~~~~~yQ~~LDk 32 (194)
..++++.+||..||+
T Consensus 13 tlsklkkkyqiildr 27 (27)
T 3owt_C 13 TLSKLKKKYQIILDR 27 (27)
T ss_pred HHHHHHhhheeeecC
Confidence 467899999999996
No 2
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=31.16 E-value=55 Score=19.87 Aligned_cols=27 Identities=4% Similarity=0.312 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 029370 141 FWPILLCYWIVLFVLTMKRQMMHMIKYR 168 (194)
Q Consensus 141 fWPiLl~Yfi~Lf~lTm~rqI~HMiKy~ 168 (194)
++|+++ -+++++++..|-|-|...+++
T Consensus 6 ~l~~v~-~~~ifYFl~iRPQ~Kr~K~~~ 32 (37)
T 2rdd_B 6 ILMLVV-FGLIFYFMILRPQQKRTKEHK 32 (37)
T ss_dssp HHHHHH-HHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHHHHHhhhHHHHHHHHH
Confidence 344433 345556666788888777764
No 3
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=29.76 E-value=29 Score=25.40 Aligned_cols=24 Identities=13% Similarity=0.463 Sum_probs=15.4
Q ss_pred HHHHHHHHHHH---hhhccccCCcCcc
Q 029370 154 VLTMKRQMMHM---IKYRYIPFSFGKQ 177 (194)
Q Consensus 154 ~lTm~rqI~HM---iKy~YvPf~~gK~ 177 (194)
...|||||+|| |--+-+|-+.+||
T Consensus 60 ~v~LrkEIk~LdEnig~~~LPinv~~k 86 (86)
T 3r84_A 60 TTQLRKEIQLLDENVGTRLLPINVNKK 86 (86)
T ss_dssp HHHHHHHHHHHHHTBTTTBCCC-----
T ss_pred HHHHHHHHHHHHHccCCeeecccCCCC
Confidence 45689999999 6677888777764
No 4
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Probab=27.07 E-value=1.3e+02 Score=27.40 Aligned_cols=106 Identities=19% Similarity=0.409 Sum_probs=57.1
Q ss_pred cEEEehhhHHHHHHHHHHhhcCCCCCccccc----ccCCCCCCCCCC-CCCCcccC-CchhHHHHHHHHHHHHHHH---H
Q 029370 60 GFYIVTYGLGIYILNLLIGFLSPKIDPEFEA----LDGASLPTKGSD-EFRPFIRR-LPEFKFWYAITKAFCVAFL---M 130 (194)
Q Consensus 60 g~YiVtY~LgIylLnlfi~FLtPk~Dp~l~~----edg~~Lp~~~~d-EFrPFiRR-LPEFkFW~~~tra~~ia~~---~ 130 (194)
-.|++.|++-|....-|-.++ .+||+... +.|...|.-+.. +=.-++.| +|-. ....|+.++++ .
T Consensus 308 ~~~~~~y~~lii~F~~fyt~i--~~np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~ri----t~~Ga~~L~~iavlP 381 (435)
T 3j01_A 308 PLYVLLYASAIIFFCFFYTAL--VFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRL----TLVGALYITFICLIP 381 (435)
T ss_dssp GGGTHHHHHHHHHHHHHHHHH--SSCTTHHHHHTTSTTCSSSCCSSSSSSCSHHHHHHHHH----CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHcCCcCCCcCCChhHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 357788888888888887877 57887542 356666664432 11112221 2222 22333444443 3
Q ss_pred Hhhc-cccccchh---HHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 029370 131 TFFS-IFDVPVFW---PILLCYWIVLFVLTMKRQMMHMIKYRYIPFS 173 (194)
Q Consensus 131 Tff~-~fDiPVfW---PiLl~Yfi~Lf~lTm~rqI~HMiKy~YvPf~ 173 (194)
.++. .+++|.+- -+|++ +..-.=|+++--.||+.++|-.|-
T Consensus 382 ~~l~~~~~~~~~~gGTslLI~--VgV~ldt~~qi~s~l~~~~Y~g~~ 426 (435)
T 3j01_A 382 EFMRDAMKVPFYFGGTSLLIV--VVVIMDFMAQVQTLMMSSQYESAL 426 (435)
T ss_dssp HHTTSCCSSSSSSCCHHHHHT--HHHHHHHHHHHHHHTSCCCCCCSC
T ss_pred HHHHHhhccCeecccHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 35677442 12221 222223555555688999999884
No 5
>3k3f_A UREA transporter; membrane protein, channel, TRAN protein, structural genomics, PSI-2; 2.30A {Desulfovibrio vulgaris} PDB: 3k3g_A 3m6e_A 3me1_A
Probab=21.95 E-value=75 Score=28.13 Aligned_cols=23 Identities=30% Similarity=1.009 Sum_probs=18.4
Q ss_pred hhccccccch-hHHHHHHHHHHHH
Q 029370 132 FFSIFDVPVF-WPILLCYWIVLFV 154 (194)
Q Consensus 132 ff~~fDiPVf-WPiLl~Yfi~Lf~ 154 (194)
++.-+++|++ ||.-+.=|++|..
T Consensus 287 ~l~~~glP~lT~PFvl~twl~ll~ 310 (340)
T 3k3f_A 287 LLSPIGMPALTWPFIVVTWLFLFA 310 (340)
T ss_dssp HTGGGTCCCTTHHHHHHHHHHHHH
T ss_pred HHhhcCCcccCHhHHHHHHHHHHH
Confidence 5567899998 9988888887753
No 6
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=21.59 E-value=1.4e+02 Score=27.18 Aligned_cols=108 Identities=17% Similarity=0.237 Sum_probs=55.6
Q ss_pred cEEEehhhHHHHHHHHHHhhcCCCCCccccc----ccCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHH---Hh
Q 029370 60 GFYIVTYGLGIYILNLLIGFLSPKIDPEFEA----LDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLM---TF 132 (194)
Q Consensus 60 g~YiVtY~LgIylLnlfi~FLtPk~Dp~l~~----edg~~Lp~~~~dEFrPFiRRLPEFkFW~~~tra~~ia~~~---Tf 132 (194)
-.|++.|++.|.+..-|-.+++ +||+... +.|...|.-+.. ||=.+-|-.--.=.....|+.++++| .+
T Consensus 304 ~~y~~~y~~lii~Fs~fy~~i~--~np~diA~~lkk~G~~IpGiRpG--~~T~~yL~~vi~rit~~Ga~~L~~iavlp~~ 379 (431)
T 3din_C 304 FLYLLIYGLLVFFFTYFYSVVI--FDPREISENIRKYGGYIPGLRPG--RSTEQYLHRVLNRVTFIGAVFLVVIALLPYL 379 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCT--THHHHHTTSCCCCBCSSCCCCCT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHCCCcCCCCCCC--hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3566788888888888888886 8887542 234445543332 12111111111112233344444433 44
Q ss_pred hcc-ccccchhH---HHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 029370 133 FSI-FDVPVFWP---ILLCYWIVLFVLTMKRQMMHMIKYRYIPFS 173 (194)
Q Consensus 133 f~~-fDiPVfWP---iLl~Yfi~Lf~lTm~rqI~HMiKy~YvPf~ 173 (194)
... +++|.+-. +|+ -+..-.=|+++-=.|++.++|-.|-
T Consensus 380 ~~~~~g~~~~~gGTslLI--~Vgv~l~~~~qi~s~~~~~~Y~g~~ 422 (431)
T 3din_C 380 VQGAIKVNVWIGGTSALI--AVGVALDIIQQMETHMVMRHYEGFI 422 (431)
T ss_dssp HTTTSCCSCCTTHHHHHH--HHHHHHHHHHHHHHHCCCCCSSTTC
T ss_pred HHHHhCCCccccchhhhh--hHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 443 56774432 222 1222222444444688999999884
No 7
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=15.21 E-value=1.1e+02 Score=27.70 Aligned_cols=106 Identities=20% Similarity=0.327 Sum_probs=52.8
Q ss_pred cEEEehhhHHHHHHHHHHhhcCCCCCccccc----ccCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHH---Hh
Q 029370 60 GFYIVTYGLGIYILNLLIGFLSPKIDPEFEA----LDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLM---TF 132 (194)
Q Consensus 60 g~YiVtY~LgIylLnlfi~FLtPk~Dp~l~~----edg~~Lp~~~~dEFrPFiRRLPEFkFW~~~tra~~ia~~~---Tf 132 (194)
-.|.+.|++.|.+..-|-.+++ +||+... +.|...|.-+.. +|=.+-|-.--.=.....|+.++++| .+
T Consensus 309 ~~y~~~y~~lii~Fs~fy~~i~--~np~diA~~lkk~G~~IpGiRpG--~~T~~yL~~vi~rit~~Ga~~L~~iavlp~~ 384 (429)
T 3dl8_G 309 IFYNFLYVTFIVFFTYFYTAVL--INPVELAENLHKAGAFIPGVRPG--QDTVKYLERIINRLIFFGALFLSVIALIPIL 384 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCT--THHHHHHHTCCCCBSSSBCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHc--cCHHHHHHHHHHCCCcCCCCCCC--hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3567788888888888888886 8887542 234444443322 01111111111111223333444433 44
Q ss_pred hcc-ccccchh---HHHHHHHHHHHHH-HHHHHHHHHhhhccccC
Q 029370 133 FSI-FDVPVFW---PILLCYWIVLFVL-TMKRQMMHMIKYRYIPF 172 (194)
Q Consensus 133 f~~-fDiPVfW---PiLl~Yfi~Lf~l-Tm~rqI~HMiKy~YvPf 172 (194)
... +++|.+- -+|+ ++-..+ |+++-=.||+.++|-.|
T Consensus 385 ~~~~~g~~~~~gGTslLI---~Vgv~l~~~~qi~s~l~~~~Y~g~ 426 (429)
T 3dl8_G 385 ISVWFNIPFYFGGTTALI---VVGVALDTFRQIETYLIQKKYKSY 426 (429)
T ss_dssp HTTSSCCSCCCSTHHHHH---HHHHHHHHHHHHHHHCCCCCTTCS
T ss_pred HHHHhCCCccccchhhhh---hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 443 5677442 1222 122233 44444468888888776
No 8
>1v74_A Colicin D; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: d.243.1.1 PDB: 1tfo_A 1tfk_A*
Probab=13.24 E-value=83 Score=24.02 Aligned_cols=12 Identities=17% Similarity=0.080 Sum_probs=10.6
Q ss_pred HHHHHHHhhhcc
Q 029370 158 KRQMMHMIKYRY 169 (194)
Q Consensus 158 ~rqI~HMiKy~Y 169 (194)
++|.+||-||..
T Consensus 12 ~~qLqkkfkHa~ 23 (107)
T 1v74_A 12 RKQLDKKYKHAG 23 (107)
T ss_dssp HHHHHHHGGGGG
T ss_pred HHHHHhHhcccc
Confidence 899999999765
No 9
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=11.12 E-value=1.8e+02 Score=17.89 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029370 143 PILLCYWIVLFVLTMKRQM 161 (194)
Q Consensus 143 PiLl~Yfi~Lf~lTm~rqI 161 (194)
-||++|=+++..+-.|..+
T Consensus 10 giL~iYgii~T~Ly~R~K~ 28 (33)
T 2hac_A 10 GILFIYGVILTALFLRVKF 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3899999999998888653
No 10
>2pif_A UPF0317 protein pspto_5379; UPF0317 family, structural genomics, PSI-2, protein structur initiative; 2.30A {Pseudomonas syringae PV} SCOP: d.382.1.1 PDB: 3db9_A
Probab=10.70 E-value=32 Score=30.15 Aligned_cols=6 Identities=83% Similarity=1.990 Sum_probs=3.2
Q ss_pred ccchhH
Q 029370 138 VPVFWP 143 (194)
Q Consensus 138 iPVfWP 143 (194)
|||||+
T Consensus 226 VPVFWa 231 (276)
T 2pif_A 226 VPVFWA 231 (276)
T ss_dssp EEEEEE
T ss_pred cceEec
Confidence 555553
Done!