Query 029370
Match_columns 194
No_of_seqs 118 out of 239
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 19:24:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029370.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029370hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xmea1 f.24.1.1 (A:14-562) Ba 22.2 24 0.0017 30.8 3.0 58 67-124 467-524 (549)
2 d1dlca3 f.1.3.1 (A:61-289) del 14.1 1.6E+02 0.011 22.0 5.8 45 124-168 8-60 (229)
3 d1veha_ d.52.8.1 (A:) HIRA-int 12.5 38 0.0028 22.9 1.4 19 153-172 61-79 (92)
4 d1u84a_ a.230.1.1 (A:) hypothe 10.6 65 0.0048 21.7 2.1 23 156-179 3-25 (81)
5 d1k8ia2 d.19.1.1 (A:11-92) Cla 9.5 37 0.0027 23.1 0.4 15 106-120 38-52 (82)
6 d1b77a1 d.131.1.2 (A:1-110) gp 9.4 22 0.0016 25.1 -0.8 22 68-89 52-74 (110)
7 d1hdma2 d.19.1.1 (A:13-93) Cla 8.6 35 0.0025 23.2 -0.0 14 106-119 39-52 (81)
8 d1eysh2 f.23.10.1 (H:7-43) Pho 7.0 1.4E+02 0.0099 17.3 2.2 21 40-61 13-33 (37)
9 d2q07a3 d.17.6.5 (A:394-459) U 7.0 72 0.0052 20.3 1.0 14 157-170 5-18 (66)
10 d1k8ba_ d.241.1.1 (A:) Transla 6.9 69 0.005 19.4 0.8 14 154-167 18-31 (52)
No 1
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=22.23 E-value=24 Score=30.84 Aligned_cols=58 Identities=21% Similarity=0.354 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccccCCCCCCCCCCCCCCcccCCchhHHHHHHHHHH
Q 029370 67 GLGIYILNLLIGFLSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAF 124 (194)
Q Consensus 67 ~LgIylLnlfi~FLtPk~Dp~l~~edg~~Lp~~~~dEFrPFiRRLPEFkFW~~~tra~ 124 (194)
+..+++.|++-...+.+..|+..++.-+...+..+.|=.+=.+.||+.|+|--..-+.
T Consensus 467 g~l~f~~nl~~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~w~~~~~~l 524 (549)
T d1xmea1 467 ALLLFIYGLFSVLLSRERKPELAEAPLPFAEVISGPEDRRLVLAMDRIGFWFAVAAIL 524 (549)
T ss_dssp HHHHHHHHHHHHHTCCCCCHHHHSSCCCCCCBCCCSSHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCCCCCCCCcccCCccHHHHHHHHHH
Confidence 4457888888888888776654321111111222222233445799999998654443
No 2
>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]}
Probab=14.15 E-value=1.6e+02 Score=22.01 Aligned_cols=45 Identities=9% Similarity=0.117 Sum_probs=27.4
Q ss_pred HHHHHHHHhhccccccchhHHHHHHHHHHHH--------HHHHHHHHHHhhhc
Q 029370 124 FCVAFLMTFFSIFDVPVFWPILLCYWIVLFV--------LTMKRQMMHMIKYR 168 (194)
Q Consensus 124 ~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~--------lTm~rqI~HMiKy~ 168 (194)
+.++++.+...++-+|+-=+++-++-.++=. =.|.+|++.||..+
T Consensus 8 ~~~~i~~~il~~~~~P~~g~~~~~~~~i~~~lwP~~~~w~~~~~~ve~lId~~ 60 (229)
T d1dlca3 8 KGISVVGDLLGVVGFPFGGALVSFYTNFLNTIWPSEDPWKAFMEQVEALMDQK 60 (229)
T ss_dssp HHHHHHHHHTTSCBSCCHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 5566677777777778765444332222222 25788999998765
No 3
>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.51 E-value=38 Score=22.93 Aligned_cols=19 Identities=32% Similarity=0.742 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhhccccC
Q 029370 153 FVLTMKRQMMHMIKYRYIPF 172 (194)
Q Consensus 153 f~lTm~rqI~HMiKy~YvPf 172 (194)
-..|+|..|++|+|+ ++|-
T Consensus 61 s~~Tlk~~Ie~~L~~-~vpe 79 (92)
T d1veha_ 61 SIITLKSGIQNMLQF-YIPE 79 (92)
T ss_dssp HHHHTHHHHHHHHHH-HCSS
T ss_pred HHHHHHHHHHHHHHH-HCCC
Confidence 457899999999998 5574
No 4
>d1u84a_ a.230.1.1 (A:) hypothetical protein YugE {Bacillus stearothermophilus [TaxId: 1422]}
Probab=10.61 E-value=65 Score=21.74 Aligned_cols=23 Identities=30% Similarity=0.716 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhccccCCcCcccc
Q 029370 156 TMKRQMMHMIKYRYIPFSFGKQKY 179 (194)
Q Consensus 156 Tm~rqI~HMiKy~YvPf~~gK~~y 179 (194)
-|.+++-|+|| ++-||-.|...|
T Consensus 3 ~~n~~m~~~i~-~WDPF~~G~d~Y 25 (81)
T d1u84a_ 3 QLNRLLLEWIG-AWDPFGLGKDAY 25 (81)
T ss_dssp HHHHHHHHHHH-HHCTTSSCGGGG
T ss_pred HHHHHHHHHHH-ccCCcccCccch
Confidence 37888889988 689999999988
No 5
>d1k8ia2 d.19.1.1 (A:11-92) Class II MHC alpha chain, N-terminal domain {Mouse (Mus musculus), H2-DM [TaxId: 10090]}
Probab=9.49 E-value=37 Score=23.11 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=11.8
Q ss_pred CcccCCchhHHHHHH
Q 029370 106 PFIRRLPEFKFWYAI 120 (194)
Q Consensus 106 PFiRRLPEFkFW~~~ 120 (194)
--+.|||||.=|-.-
T Consensus 38 ~rvPrLPefa~Wa~~ 52 (82)
T d1k8ia2 38 TRVPRLPDFAEWAQG 52 (82)
T ss_dssp EEEESSTTTTHHHHC
T ss_pred ccccCCCcccccccc
Confidence 347799999999753
No 6
>d1b77a1 d.131.1.2 (A:1-110) gp45 sliding clamp {Bacteriophage RB69 [TaxId: 12353]}
Probab=9.40 E-value=22 Score=25.14 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhcCCC-CCcccc
Q 029370 68 LGIYILNLLIGFLSPK-IDPEFE 89 (194)
Q Consensus 68 LgIylLnlfi~FLtPk-~Dp~l~ 89 (194)
.|||=||.||+-|+=. -||+++
T Consensus 52 faIYDL~eFL~~lsL~~~~p~l~ 74 (110)
T d1b77a1 52 VALYDLNSFLSILSLVSDDAEIS 74 (110)
T ss_dssp EEESCHHHHHHHHTTSCTTCEEE
T ss_pred eeeeeHHHHHhHHhhccCCCccc
Confidence 4799999999999876 478876
No 7
>d1hdma2 d.19.1.1 (A:13-93) Class II MHC alpha chain, N-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}
Probab=8.57 E-value=35 Score=23.18 Aligned_cols=14 Identities=43% Similarity=0.783 Sum_probs=11.0
Q ss_pred CcccCCchhHHHHH
Q 029370 106 PFIRRLPEFKFWYA 119 (194)
Q Consensus 106 PFiRRLPEFkFW~~ 119 (194)
--+.|||||+=|-.
T Consensus 39 ~rvPrLPefa~Wa~ 52 (81)
T d1hdma2 39 TRVPRLPEFADWAQ 52 (81)
T ss_dssp EEEESSGGGGGGTT
T ss_pred ccccCCCccccchh
Confidence 34779999999953
No 8
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=6.98 E-value=1.4e+02 Score=17.33 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHhheeccE
Q 029370 40 RWIGTLAAASIYLLRVYCVQGF 61 (194)
Q Consensus 40 RW~~~~~l~~lf~~Rv~~~~g~ 61 (194)
=|+++++|++ |+-|==...||
T Consensus 13 Fw~FFagLi~-YL~rE~~REGy 33 (37)
T d1eysh2 13 FWLFFFGLII-YLRREDKREGY 33 (37)
T ss_dssp HHHHHHHHHH-HHHHHTTSSSC
T ss_pred HHHHHHHHHH-HHHhcccccCC
Confidence 3665555443 66554444443
No 9
>d2q07a3 d.17.6.5 (A:394-459) Uncharacterized protein AF0587 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=6.97 E-value=72 Score=20.27 Aligned_cols=14 Identities=29% Similarity=0.695 Sum_probs=11.7
Q ss_pred HHHHHHHHhhhccc
Q 029370 157 MKRQMMHMIKYRYI 170 (194)
Q Consensus 157 m~rqI~HMiKy~Yv 170 (194)
-||...||..|.+=
T Consensus 5 yrrilehmlsyqfg 18 (66)
T d2q07a3 5 YRRILEHMLSYQFG 18 (66)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhhc
Confidence 38899999999873
No 10
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=6.86 E-value=69 Score=19.42 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhh
Q 029370 154 VLTMKRQMMHMIKY 167 (194)
Q Consensus 154 ~lTm~rqI~HMiKy 167 (194)
|-.|+|.-+|+.||
T Consensus 18 ~~~L~R~p~hv~kf 31 (52)
T d1k8ba_ 18 AKAVNRDEEFFAKY 31 (52)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHhCCCHHHHHHH
Done!