BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029371
(194 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BZI6|GUCD1_MOUSE Protein GUCD1 OS=Mus musculus GN=Gucd1 PE=2 SV=2
Length = 239
Score = 97.4 bits (241), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 110/201 (54%), Gaps = 13/201 (6%)
Query: 1 MVLRTIG-INNCNIQ-GLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVET 58
MVLR +G +++ + L E T SIWT+DLAYL++ F V + T TLG + Y ++
Sbjct: 40 MVLRYLGQLDDGEFENALQELQLTRSIWTIDLAYLMRHFGVRHRFCTQTLGVDKGYKNQS 99
Query: 59 FYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHS 118
FY++ T+ RV+ LF +A++ +++E ++S +I + + G ++AI LV+ L H
Sbjct: 100 FYRKHFDTEETRVNQLFAQAKACKVQVEKCTVSVQDIQVHLAQG-HVAIVLVNSGVL-HC 157
Query: 119 WMEDVIVPGFYGSDSG---------YTGHYILICGYDANSDEFEIRDPASCRKREKVTLK 169
+ V + SG Y GH+I++ GY+ + +PA + ++
Sbjct: 158 DLCSSPVKYCCFTPSGHRCFCRTPDYQGHFIVLRGYNRATGCIFYNNPAYADRMCSTSIS 217
Query: 170 CLEEARKSFGTDEDLLLISLE 190
EEAR S+GTDED+L + L+
Sbjct: 218 NFEEARTSYGTDEDILFVYLD 238
>sp|Q96NT3|GUCD1_HUMAN Protein GUCD1 OS=Homo sapiens GN=GUCD1 PE=2 SV=2
Length = 240
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 22/206 (10%)
Query: 1 MVLRTIG-INNCNIQ-GLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVET 58
MVLR +G +++ + L + T SIWT+DLAYL+ F V + T TLG + Y ++
Sbjct: 40 MVLRYLGQLDDSEFERALQKLQLTRSIWTIDLAYLMHHFGVRHRFCTQTLGVDKGYKNQS 99
Query: 59 FYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHS 118
FY++ T+ RV+ LF +A++ + +E ++S +I + G ++AI LV+ L H
Sbjct: 100 FYRKHFDTEETRVNQLFAQAKACKVLVEKCTVSVKDIQAHLAQG-HVAIVLVNSGVL-HC 157
Query: 119 WMEDVIVPGFYGSDSG---------YTGHYILICGYDANS-----DEFEIRDPASCRKRE 164
+ V + SG Y GH+I++ GY+ + + DP C
Sbjct: 158 DLCSSPVKYCCFTPSGHHCFCRTPDYQGHFIVLRGYNRATGCIFYNNPAYADPGMC---- 213
Query: 165 KVTLKCLEEARKSFGTDEDLLLISLE 190
++ EEAR S+GTDED+L + L+
Sbjct: 214 STSISNFEEARTSYGTDEDILFVYLD 239
>sp|Q2Y9Y9|BIOB_NITMU Biotin synthase OS=Nitrosospira multiformis (strain ATCC 25196 /
NCIMB 11849) GN=bioB PE=3 SV=1
Length = 342
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 10/101 (9%)
Query: 18 EQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLV--RVDMLF 75
E C T + A LQ+ G Y+ L +P FY E + T R+D L
Sbjct: 155 EACTTLGMLKPGQAEQLQE--AGLDYYNHNLDTSPE-----FYGEIITTRDYEDRLDTL- 206
Query: 76 QKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLS 116
QK R AGI + CG I G+ S +G +A +D Y S
Sbjct: 207 QKVRHAGINVCCGGIVGMGESRRARAGLIAQLANLDPYPES 247
>sp|A1TQ53|BIOB_ACIAC Biotin synthase OS=Acidovorax citrulli (strain AAC00-1) GN=bioB
PE=3 SV=1
Length = 354
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 15/126 (11%)
Query: 13 IQGLAEQCCTT-SIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETF----YKEQLPTD 67
++GL Q C T + A L+ G Y+ L P Y + Y+E+L T
Sbjct: 146 VKGLGMQTCATLGMLEPHQAQALK--GAGLDYYNHNLDTAPEYYTDVVSTRAYQERLDT- 202
Query: 68 LVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPG 127
+ R AGI + CG I G+ + + +G +A +D Y S V VPG
Sbjct: 203 -------LRHVREAGISVCCGGIIGMGEAPVHRAGLIAQLANLDPYPESVPINSLVRVPG 255
Query: 128 FYGSDS 133
+DS
Sbjct: 256 TPLADS 261
>sp|A1WQW2|FENR_VEREI Ferredoxin--NADP reductase OS=Verminephrobacter eiseniae (strain
EF01-2) GN=Veis_4316 PE=3 SV=1
Length = 353
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 75 FQKARSAG-IKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIV 125
Q+ R+AG I +E G I+G+ S M A+ +VD SH+ DV+V
Sbjct: 199 LQRLRAAGRIAVEVGQITGIASSGMPQCSTLRALQVVDAQGASHALPVDVLV 250
>sp|Q2SBD4|BIOB_HAHCH Biotin synthase OS=Hahella chejuensis (strain KCTC 2396) GN=bioB
PE=3 SV=1
Length = 354
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 14/80 (17%)
Query: 18 EQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETF----YKEQLPTDLVRVDM 73
E C T + T D A L G Y+ L + NY E Y ++L T
Sbjct: 128 ETCMTLGMLTADQASELA--GAGLDYYNHNLDTSENYYGEIITTRTYSDRLET------- 178
Query: 74 LFQKARSAGIKIECGSISGV 93
Q R AG+K+ CG I G+
Sbjct: 179 -LQNVRDAGMKVCCGGIMGM 197
>sp|Q8TIZ2|Y3997_METAC UPF0288 protein MA_3997 OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3997 PE=3 SV=1
Length = 525
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 14 QGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFY 60
+ LAE+ CTT DL+ +L+ + F+YF + L N E FY
Sbjct: 188 EQLAEKTCTT-----DLSTILEDEDSVFTYFEVELSRNSPKGAEHFY 229
>sp|Q13046|PSG7_HUMAN Putative pregnancy-specific beta-1-glycoprotein 7 OS=Homo sapiens
GN=PSG7 PE=5 SV=2
Length = 419
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 119 WMEDVIVPGFYG---SDSGYTGHYILICGYDANSDEFEIRDPASCRKREKVTLKCLEEAR 175
WM +P + S++ T + + Y A E EIR+P S + + VTL L +
Sbjct: 181 WMNGQSLPMTHSLQLSETNRTLYLFGVTNYTAGPYECEIRNPVSASRSDPVTLNLLPKLP 240
Query: 176 KSFGTDEDL 184
K + T +L
Sbjct: 241 KPYITINNL 249
>sp|Q1QRH1|BIOB_NITHX Biotin synthase OS=Nitrobacter hamburgensis (strain X14 / DSM
10229) GN=bioB PE=3 SV=1
Length = 340
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 18 EQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLV--RVDMLF 75
E C T + T D A L + G ++ + +P FY + T + R+D L
Sbjct: 141 ETCATLGMLTPDQARRLH--DAGLDFYNHNVDTSPE-----FYGNIITTRTMQDRIDTLA 193
Query: 76 QKARSAGIKIECGSISGV 93
AR AG+K+ CG I G+
Sbjct: 194 H-AREAGLKVCCGGIIGL 210
>sp|Q609V2|BIOB_METCA Biotin synthase OS=Methylococcus capsulatus (strain ATCC 33009 /
NCIMB 11132 / Bath) GN=bioB PE=3 SV=2
Length = 326
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 10/101 (9%)
Query: 18 EQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLV--RVDMLF 75
E C T + + + A L++ G Y+ L + E++Y E + T R+D L
Sbjct: 135 ETCVTAGMLSDEQARRLKE--AGLDYYNHNLDTS-----ESYYGEIITTRTYQDRLDTL- 186
Query: 76 QKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLS 116
Q+ R AG+ + CG I G+ S +G I +A + ++ S
Sbjct: 187 QRVRDAGMHVCCGGIVGMGESAADRAGLLIGLANLPRHPES 227
>sp|A4IPN3|PROB_GEOTN Glutamate 5-kinase OS=Geobacillus thermodenitrificans (strain
NG80-2) GN=proB PE=3 SV=1
Length = 374
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 11/104 (10%)
Query: 76 QKARSAGIKIECGSISGVEISLMILSGN----YIAIALVDQYKLSHSWME-DVIVPGFYG 130
QKA S G+ + G+ SG E IL+G YI + Q ++ W+ V G
Sbjct: 221 QKALSFGVSVFIGTGSGKEKLADILAGKGDGTYIGVPFPKQMQMRKQWIAYHAPVSGTIT 280
Query: 131 SDSGY------TGHYILICGYDANSDEFEIRDPASCRKREKVTL 168
DSG G +L G A S +F D + + VT+
Sbjct: 281 VDSGAEEALLDRGKSLLPAGVTAVSGDFHAMDVVNVINEKGVTI 324
>sp|Q82SL7|BIOB_NITEU Biotin synthase OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC
14298) GN=bioB PE=3 SV=2
Length = 337
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 10/101 (9%)
Query: 18 EQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLV--RVDMLF 75
E C T I A L++ G Y+ L P FY E + T R+D L
Sbjct: 150 ETCATLGILKPGQATQLKQ--AGLDYYNHNLDTAPE-----FYGEIITTREYQDRLDTL- 201
Query: 76 QKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLS 116
++ R A I + CG I G+ S M +G +A +D Y S
Sbjct: 202 EEVRGANINVCCGGIVGLGESRMARAGLIAQLANLDPYPES 242
>sp|A6SU66|BIOB_JANMA Biotin synthase OS=Janthinobacterium sp. (strain Marseille) GN=bioB
PE=3 SV=1
Length = 339
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 12/120 (10%)
Query: 18 EQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTD--LVRVDMLF 75
E C T + A L+ N G Y+ L P FY + T R+D L
Sbjct: 139 ETCATLGMLGEGQAEKLK--NAGLDYYNHNLDTAPE-----FYSNVISTRDYQNRIDTL- 190
Query: 76 QKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPG--FYGSDS 133
+ R AGIK+ CG I G+ S + +G + +D Y S V V G +G+D
Sbjct: 191 GRVRGAGIKVCCGGIVGMGESRLQRAGLIAQLCNMDPYPESVPVNNLVQVEGTPLHGTDP 250
>sp|P11464|PSG1_HUMAN Pregnancy-specific beta-1-glycoprotein 1 OS=Homo sapiens GN=PSG1
PE=2 SV=1
Length = 419
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 119 WMEDVIVPGFYGSDSGYTGHYILICG---YDANSDEFEIRDPASCRKREKVTLKCLEEAR 175
WM +P + T + + G Y A E EIR+P S + + VTL L +
Sbjct: 181 WMNGQSLPMTHSLKLSETNRTLFLLGVTKYTAGPYECEIRNPVSASRSDPVTLNLLPKLP 240
Query: 176 KSFGTDEDL 184
K + T +L
Sbjct: 241 KPYITINNL 249
>sp|Q7V6T8|BIOB_PROMM Biotin synthase OS=Prochlorococcus marinus (strain MIT 9313)
GN=bioB PE=3 SV=1
Length = 335
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 14/80 (17%)
Query: 18 EQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETF----YKEQLPTDLVRVDM 73
E C T + T A L + G + + L +P Y + Y+E++ T
Sbjct: 142 EACVTAGMLTEKQASRL--ADAGLTAYNHNLDTSPEYYDQIITTRTYQERIET------- 192
Query: 74 LFQKARSAGIKIECGSISGV 93
QK RSAGI + CG I G+
Sbjct: 193 -LQKVRSAGITLCCGGIIGM 211
>sp|A2C8D5|BIOB_PROM3 Biotin synthase OS=Prochlorococcus marinus (strain MIT 9303)
GN=bioB PE=3 SV=1
Length = 335
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 14/80 (17%)
Query: 18 EQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETF----YKEQLPTDLVRVDM 73
E C T + T A L + G + + L +P Y + Y+E++ T
Sbjct: 142 EACVTAGMLTEKQASRL--ADAGLTAYNHNLDTSPEYYDQIITTRTYQERIET------- 192
Query: 74 LFQKARSAGIKIECGSISGV 93
QK RSAGI + CG I G+
Sbjct: 193 -LQKVRSAGITLCCGGIIGM 211
>sp|Q146K5|BIOB_BURXL Biotin synthase OS=Burkholderia xenovorans (strain LB400) GN=bioB
PE=3 SV=1
Length = 360
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 10/101 (9%)
Query: 18 EQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLV--RVDMLF 75
E C T + A L++ G Y+ L +P FY + + T R+D L
Sbjct: 150 ETCVTLGMLETHQAQGLRE--AGLDYYNHNLDTSPE-----FYGQIISTRTYQDRLDTL- 201
Query: 76 QKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLS 116
++ R AGI + CG I G+ S +G +A +D Y S
Sbjct: 202 ERVRDAGINVCCGGIVGLGESRRERAGLIAQLANMDPYPES 242
>sp|Q0AE72|BIOB_NITEC Biotin synthase OS=Nitrosomonas eutropha (strain C91) GN=bioB PE=3
SV=1
Length = 338
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 18 EQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQK 77
E C T I A L++ G Y+ L +P + E + L +D +
Sbjct: 151 ETCATLGILKPGQAVQLKQ--AGLDYYNHNLDTSPEFYGEVITTREYQNRLDTLD----E 204
Query: 78 ARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLS 116
R A I + CG I G+ S +G +A +D Y S
Sbjct: 205 VRGANINVCCGGIVGMGESRTARAGLIAQLASLDPYPES 243
>sp|Q12F39|BIOB1_POLSJ Biotin synthase 1 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500)
GN=bioB1 PE=3 SV=1
Length = 337
Score = 30.4 bits (67), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 14/80 (17%)
Query: 18 EQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETF----YKEQLPTDLVRVDM 73
E C T + A LQ + G Y+ L + P++ + Y+++L T L RV
Sbjct: 145 ETCATLGMLEDGHAQTLQ--SAGLDYYNHNLDSAPDFYGDIITTRDYQDRLDT-LARV-- 199
Query: 74 LFQKARSAGIKIECGSISGV 93
RSAG+K+ CG I G+
Sbjct: 200 -----RSAGVKVCCGGIVGM 214
>sp|Q3SW30|BIOB_NITWN Biotin synthase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC
25391) GN=bioB PE=3 SV=1
Length = 341
Score = 30.4 bits (67), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 13/114 (11%)
Query: 18 EQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLV--RVDMLF 75
E C T + T + A LQ+ G ++ + +P FY + + T + R++ L
Sbjct: 141 ETCATLGMLTPEQARRLQE--AGLDFYNHNVDTSPE-----FYDKIITTRTMQDRIETL- 192
Query: 76 QKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLS---HSWMEDVIVP 126
AR AG+K+ CG I G+ + G I +A +D++ S + W E VP
Sbjct: 193 ACAREAGLKLCCGGIIGMGEQVGDRLGMLILLANLDEHPESVPINLWNEVRGVP 246
>sp|A1VUJ4|BIOB_POLNA Biotin synthase OS=Polaromonas naphthalenivorans (strain CJ2)
GN=bioB PE=3 SV=1
Length = 345
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 17/127 (13%)
Query: 13 IQGLA-EQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNY-----SVETFYKEQLPT 66
++GL E C T + + A L+ + G Y+ L ++P + S T Y+++L T
Sbjct: 142 VRGLGLETCMTLGMLEAEQAQALK--DAGLDYYNHNLDSSPEFYGSIISTRT-YQDRLDT 198
Query: 67 DLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVP 126
+ R AGI + CG I G+ S +G +A ++ Y S V V
Sbjct: 199 --------LENVRGAGINVCCGGIVGMGESRAQRAGLVAQLANLEPYPESVPINNLVAVE 250
Query: 127 GFYGSDS 133
G +D+
Sbjct: 251 GTPLADT 257
>sp|Q6GG30|TIG_STAAR Trigger factor OS=Staphylococcus aureus (strain MRSA252) GN=tig
PE=3 SV=1
Length = 433
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 139 YILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDL 184
Y I G D + +++D A R + +TL + EA K TDED+
Sbjct: 334 YFQISGQDESQLREQMKDDAEQRVKTNLTLTAIAEAEKIEATDEDI 379
>sp|Q2YTB4|TIG_STAAB Trigger factor OS=Staphylococcus aureus (strain bovine RF122 /
ET3-1) GN=tig PE=3 SV=1
Length = 433
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 139 YILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDL 184
Y I G D + +++D A R + +TL + EA K TDED+
Sbjct: 334 YFQISGQDESQLREQMKDDAEQRVKTNLTLTAIAEAEKIEATDEDI 379
>sp|A4G1F1|BIOB_HERAR Biotin synthase OS=Herminiimonas arsenicoxydans GN=bioB PE=3 SV=1
Length = 339
Score = 30.4 bits (67), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 12/120 (10%)
Query: 18 EQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTD--LVRVDMLF 75
E C T + A L+ N G Y+ L P FY + T R+D L
Sbjct: 139 ETCATLGMLGEGQAEKLK--NAGLDYYNHNLDTAPE-----FYSNVISTRDYQNRIDTL- 190
Query: 76 QKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPG--FYGSDS 133
+ R+ GIK+ CG I G+ S + +G + +D Y S V V G +G+D
Sbjct: 191 ARVRNVGIKVCCGGIVGMGESRLQRAGLIAQLCNMDPYPESVPVNNLVQVEGTPLHGTDP 250
>sp|A4YQS3|BIOB_BRASO Biotin synthase OS=Bradyrhizobium sp. (strain ORS278) GN=bioB PE=3
SV=1
Length = 334
Score = 30.4 bits (67), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 13/114 (11%)
Query: 18 EQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLV--RVDMLF 75
E C T + T A L++ G Y+ + +P FY + T + R+D L
Sbjct: 129 ETCVTLGMLTPPQAARLKQ--AGLDYYNHNVDTSPE-----FYDRIITTRTMQDRIDTL- 180
Query: 76 QKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLS---HSWMEDVIVP 126
R AGIK+ CG I G+ + G + +A +D + S + W E VP
Sbjct: 181 ANVREAGIKVCCGGIIGMGEEVDDRLGMLVLLANLDAHPDSVPINMWNEVKGVP 234
>sp|Q9AMS7|BIOB_BRAJA Biotin synthase OS=Bradyrhizobium japonicum (strain USDA 110)
GN=bioB PE=3 SV=1
Length = 331
Score = 30.0 bits (66), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 13 IQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRVD 72
++GL + C T + T+ + + G ++ + +P + + L R+D
Sbjct: 135 VKGLGMETCVT-LGTLTPKHAARLAEAGLDFYNHNVDTSPEFYSKIITTRSLQD---RID 190
Query: 73 MLFQKARSAGIKIECGSISGV 93
L R AGIKI CG I G+
Sbjct: 191 TLAH-VRDAGIKICCGGIIGM 210
>sp|A6QHK9|TIG_STAAE Trigger factor OS=Staphylococcus aureus (strain Newman) GN=tig PE=3
SV=1
Length = 433
Score = 30.0 bits (66), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 139 YILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDL 184
Y I G D +++D A R + +TL + EA K TDED+
Sbjct: 334 YFQISGQDETQLREQMKDDAEQRVKTNLTLTAIAEAEKIEATDEDI 379
>sp|P66935|TIG_STAAW Trigger factor OS=Staphylococcus aureus (strain MW2) GN=tig PE=3
SV=1
Length = 433
Score = 30.0 bits (66), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 139 YILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDL 184
Y I G D +++D A R + +TL + EA K TDED+
Sbjct: 334 YFQISGQDETQLREQMKDDAEQRVKTNLTLTAIAEAEKIEATDEDI 379
>sp|A8Z2J6|TIG_STAAT Trigger factor OS=Staphylococcus aureus (strain USA300 / TCH1516)
GN=tig PE=3 SV=1
Length = 433
Score = 30.0 bits (66), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 139 YILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDL 184
Y I G D +++D A R + +TL + EA K TDED+
Sbjct: 334 YFQISGQDETQLREQMKDDAEQRVKTNLTLTAIAEAEKIEATDEDI 379
>sp|Q6G8Q0|TIG_STAAS Trigger factor OS=Staphylococcus aureus (strain MSSA476) GN=tig
PE=3 SV=1
Length = 433
Score = 30.0 bits (66), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 139 YILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDL 184
Y I G D +++D A R + +TL + EA K TDED+
Sbjct: 334 YFQISGQDETQLREQMKDDAEQRVKTNLTLTAIAEAEKIEATDEDI 379
>sp|P99080|TIG_STAAN Trigger factor OS=Staphylococcus aureus (strain N315) GN=tig PE=1
SV=1
Length = 433
Score = 30.0 bits (66), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 139 YILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDL 184
Y I G D +++D A R + +TL + EA K TDED+
Sbjct: 334 YFQISGQDETQLREQMKDDAEQRVKTNLTLTAIAEAEKIEATDEDI 379
>sp|P66934|TIG_STAAM Trigger factor OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=tig PE=1 SV=1
Length = 433
Score = 30.0 bits (66), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 139 YILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDL 184
Y I G D +++D A R + +TL + EA K TDED+
Sbjct: 334 YFQISGQDETQLREQMKDDAEQRVKTNLTLTAIAEAEKIEATDEDI 379
>sp|Q5HF97|TIG_STAAC Trigger factor OS=Staphylococcus aureus (strain COL) GN=tig PE=3
SV=1
Length = 433
Score = 30.0 bits (66), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 139 YILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDL 184
Y I G D +++D A R + +TL + EA K TDED+
Sbjct: 334 YFQISGQDETQLREQMKDDAEQRVKTNLTLTAIAEAEKIEATDEDI 379
>sp|A5ITK0|TIG_STAA9 Trigger factor OS=Staphylococcus aureus (strain JH9) GN=tig PE=3
SV=1
Length = 433
Score = 30.0 bits (66), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 139 YILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDL 184
Y I G D +++D A R + +TL + EA K TDED+
Sbjct: 334 YFQISGQDETQLREQMKDDAEQRVKTNLTLTAIAEAEKIEATDEDI 379
>sp|Q2FXQ6|TIG_STAA8 Trigger factor OS=Staphylococcus aureus (strain NCTC 8325) GN=tig
PE=3 SV=1
Length = 433
Score = 30.0 bits (66), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 139 YILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDL 184
Y I G D +++D A R + +TL + EA K TDED+
Sbjct: 334 YFQISGQDETQLREQMKDDAEQRVKTNLTLTAIAEAEKIEATDEDI 379
>sp|Q2FG61|TIG_STAA3 Trigger factor OS=Staphylococcus aureus (strain USA300) GN=tig PE=3
SV=1
Length = 433
Score = 30.0 bits (66), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 139 YILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDL 184
Y I G D +++D A R + +TL + EA K TDED+
Sbjct: 334 YFQISGQDETQLREQMKDDAEQRVKTNLTLTAIAEAEKIEATDEDI 379
>sp|A6U2E3|TIG_STAA2 Trigger factor OS=Staphylococcus aureus (strain JH1) GN=tig PE=3
SV=1
Length = 433
Score = 30.0 bits (66), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 139 YILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDL 184
Y I G D +++D A R + +TL + EA K TDED+
Sbjct: 334 YFQISGQDETQLREQMKDDAEQRVKTNLTLTAIAEAEKIEATDEDI 379
>sp|A7X397|TIG_STAA1 Trigger factor OS=Staphylococcus aureus (strain Mu3 / ATCC 700698)
GN=tig PE=3 SV=1
Length = 433
Score = 30.0 bits (66), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 139 YILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDL 184
Y I G D +++D A R + +TL + EA K TDED+
Sbjct: 334 YFQISGQDETQLREQMKDDAEQRVKTNLTLTAIAEAEKIEATDEDI 379
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,020,036
Number of Sequences: 539616
Number of extensions: 2875219
Number of successful extensions: 6875
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 6851
Number of HSP's gapped (non-prelim): 60
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)