Query 029371
Match_columns 194
No_of_seqs 94 out of 104
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 19:25:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029371.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029371hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3erv_A Putative C39-like pepti 99.6 7.7E-15 2.6E-19 125.0 12.2 150 15-180 45-218 (236)
2 3b79_A Toxin secretion ATP-bin 98.6 4.5E-08 1.5E-12 73.3 6.0 108 26-175 8-117 (129)
3 3k8u_A Putative ABC transporte 98.4 6.5E-07 2.2E-11 69.7 7.2 119 29-190 21-141 (156)
4 3zua_A CLD, alpha-hemolysin tr 98.1 7.9E-06 2.7E-10 62.6 8.2 117 26-190 15-133 (142)
5 2bu3_A ALR0975 protein; phytoc 97.0 0.011 3.7E-07 50.7 12.1 93 67-175 132-232 (254)
6 1pxv_A Cysteine protease; hydr 96.3 0.031 1.1E-06 45.7 9.9 93 52-164 62-158 (183)
7 8pch_A Cathepsin H; hydrolase, 95.3 0.034 1.2E-06 45.3 6.5 67 90-157 119-187 (220)
8 1cv8_A Staphopain; cysteine pr 95.2 0.1 3.5E-06 42.4 8.8 92 52-164 53-149 (174)
9 3u8e_A Papain-like cysteine pr 93.8 0.14 4.6E-06 41.9 6.6 64 90-156 114-183 (222)
10 1x9y_A Cysteine proteinase; ha 93.1 0.37 1.3E-05 43.1 8.6 79 71-164 252-334 (367)
11 3ovx_A Cathepsin S; hydrolase, 93.0 0.19 6.6E-06 40.6 6.3 62 90-156 120-185 (218)
12 3i06_A Cruzipain; autocatalyti 92.6 0.31 1.1E-05 39.5 7.0 61 91-157 121-183 (215)
13 1iwd_A Ervatamin B; cysteine p 91.2 0.45 1.5E-05 38.7 6.4 60 91-157 116-179 (215)
14 2xu3_A Cathepsin L1; hydrolase 91.1 0.52 1.8E-05 38.2 6.8 62 91-156 118-187 (220)
15 3kwz_A Cathepsin K; enzyme inh 91.1 0.47 1.6E-05 38.2 6.4 63 90-156 116-182 (215)
16 1cqd_A Protein (protease II); 90.8 0.41 1.4E-05 39.0 5.8 60 91-157 119-182 (221)
17 3ois_A Cysteine protease; alph 90.1 0.56 1.9E-05 39.8 6.3 79 91-172 190-275 (291)
18 3p5u_A Actinidin; SAD, cystein 89.8 0.57 1.9E-05 38.0 5.8 60 90-156 119-182 (220)
19 1yal_A Chymopapain; hydrolase, 89.6 0.59 2E-05 38.0 5.8 61 90-157 116-180 (218)
20 2bdz_A Mexicain; cysteine prot 89.2 0.85 2.9E-05 36.9 6.5 59 90-157 116-176 (214)
21 1o0e_A Ervatamin C; plant cyst 89.2 1 3.5E-05 36.3 6.9 58 91-157 115-174 (208)
22 1ppo_A Protease omega; hydrola 89.0 0.66 2.2E-05 37.6 5.6 60 90-156 116-179 (216)
23 3qt4_A Cathepsin-L-like midgut 88.8 0.95 3.3E-05 39.5 6.9 63 90-156 231-296 (329)
24 1s4v_A Cysteine endopeptidase; 88.7 0.87 3E-05 37.3 6.3 60 91-157 120-184 (229)
25 1m6d_A Cathepsin F, catsf; pap 88.6 0.52 1.8E-05 38.1 4.8 63 91-156 116-181 (214)
26 2cio_A Papain; hydrolase/inhib 88.5 1.2 4.2E-05 35.9 7.0 58 91-157 117-176 (212)
27 3f75_A Toxopain-2, cathepsin L 88.3 0.68 2.3E-05 37.4 5.3 60 90-156 124-189 (224)
28 3qj3_A Cathepsin L-like protei 88.2 0.87 3E-05 39.7 6.3 64 90-156 233-298 (331)
29 1xkg_A DER P I, major mite fec 87.6 0.92 3.2E-05 39.2 6.0 64 90-157 202-271 (312)
30 2b1m_A SPE31; papain-like, sug 87.2 1.8 6.3E-05 35.8 7.4 61 91-156 121-188 (246)
31 3ioq_A CMS1MS2; caricaceae, cy 87.0 1.4 4.8E-05 35.5 6.5 57 91-156 117-175 (213)
32 2c0y_A Procathepsin S; proenzy 86.8 0.96 3.3E-05 39.0 5.6 62 90-156 217-282 (315)
33 3cbj_A Cathepsin B; cathepsin 85.9 0.89 3.1E-05 38.0 4.9 62 90-157 161-226 (266)
34 3zxw_B Ribulose bisphosphate c 85.9 3.1 0.00011 31.6 7.4 65 94-161 27-110 (118)
35 3f5v_A DER P 1 allergen; aller 85.6 1.8 6.1E-05 35.0 6.4 64 89-157 121-191 (222)
36 1by8_A Protein (procathepsin K 85.5 1 3.5E-05 38.8 5.2 64 90-157 215-282 (314)
37 2fo5_A Cysteine proteinase EP- 85.1 1.7 5.9E-05 36.5 6.3 60 90-156 124-188 (262)
38 2o6x_A Procathepsin L1, secret 83.6 1.4 4.8E-05 37.9 5.1 61 90-156 208-273 (310)
39 2oul_A Falcipain 2; cysteine p 83.4 1.4 4.7E-05 36.3 4.9 52 90-149 134-185 (241)
40 1deu_A Procathepsin X; cystein 83.4 1.7 5.7E-05 36.8 5.4 63 91-157 172-236 (277)
41 3bwk_A Cysteine protease falci 83.1 1.5 5E-05 36.2 4.9 52 90-149 136-187 (243)
42 1pci_A Procaricain; zymogen, h 82.7 1.8 6.1E-05 37.5 5.4 59 91-156 223-285 (322)
43 1cs8_A Human procathepsin L; p 81.7 2.2 7.7E-05 36.7 5.7 62 91-156 214-283 (316)
44 1rbl_M Ribulose 1,5 bisphospha 81.5 6.9 0.00023 29.2 7.6 63 93-158 27-108 (109)
45 3hhi_A Cathepsin B-like cystei 79.7 1.6 5.4E-05 37.9 4.1 60 90-156 216-280 (325)
46 4f0h_B Ribulose bisphosphate c 79.4 9.8 0.00033 29.6 8.1 66 93-161 21-107 (138)
47 3qsd_A Cathepsin B-like peptid 79.4 2.5 8.5E-05 34.9 5.1 62 90-157 157-222 (254)
48 2wbf_X Serine-repeat antigen p 78.5 3.2 0.00011 34.3 5.4 53 92-148 157-210 (265)
49 1svd_M Ribulose bisphosphate c 77.5 10 0.00035 28.3 7.4 62 93-157 29-109 (110)
50 3pbh_A Procathepsin B; thiol p 77.4 2.6 9E-05 36.3 4.8 60 90-156 218-282 (317)
51 3pdf_A Cathepsin C, dipeptidyl 74.5 7.2 0.00025 35.3 7.0 63 90-156 331-403 (441)
52 1wdd_S Ribulose bisphosphate c 72.3 4.1 0.00014 31.3 4.1 65 93-160 28-122 (128)
53 1bwv_S Rubisco, protein (ribul 71.6 20 0.00068 27.8 7.9 66 93-161 21-107 (138)
54 3k8u_A Putative ABC transporte 67.0 4.6 0.00016 30.4 3.4 45 1-46 24-70 (156)
55 1gk8_I Ribulose bisphosphate c 66.6 5.5 0.00019 31.1 3.8 29 134-162 99-131 (140)
56 3dth_A Branched-chain amino ac 64.1 11 0.00038 33.3 5.8 42 72-113 278-319 (372)
57 1oey_A P67-PHOX, neutrophil cy 61.6 5 0.00017 28.5 2.5 26 151-177 45-70 (83)
58 3b79_A Toxin secretion ATP-bin 60.2 3.9 0.00013 29.4 1.8 45 1-46 14-60 (129)
59 3zua_A CLD, alpha-hemolysin tr 59.7 6.5 0.00022 29.1 3.0 45 1-46 21-67 (142)
60 3a1y_G Acidic ribosomal protei 58.1 2 6.7E-05 36.7 -0.2 76 2-79 139-221 (284)
61 3tql_A Arginine-binding protei 57.4 13 0.00045 27.6 4.5 59 46-104 4-62 (227)
62 3tnx_A Papain; hydrolase, cyto 55.6 26 0.00089 30.9 6.7 60 89-156 266-326 (363)
63 2a1h_A Branched chain aminotra 53.7 23 0.0008 30.8 6.0 42 72-113 272-314 (365)
64 2e01_A Cysteine proteinase 1; 52.6 34 0.0012 31.2 7.1 87 84-172 300-416 (457)
65 1bxn_I Rubisco, protein (ribul 52.5 21 0.00072 27.7 4.9 65 93-160 21-106 (139)
66 4gvo_A LMO2349 protein; struct 52.5 5.9 0.0002 30.9 1.8 60 45-104 10-70 (243)
67 3on1_A BH2414 protein; structu 50.9 14 0.00049 26.2 3.5 46 68-114 46-91 (101)
68 2coi_A Branched chain aminotra 50.4 26 0.00088 30.9 5.8 42 72-113 292-334 (386)
69 3u5e_c L32, RP73, YL38, 60S ri 50.0 37 0.0013 24.3 5.7 48 68-115 50-98 (105)
70 1lst_A Lysine, arginine, ornit 48.0 15 0.0005 27.8 3.4 59 46-104 6-64 (239)
71 3v7q_A Probable ribosomal prot 47.4 20 0.0007 25.5 3.9 46 68-114 47-92 (101)
72 2y7i_A STM4351; arginine-bindi 46.5 17 0.00059 27.1 3.6 59 46-104 8-66 (229)
73 2cb5_A Protein (bleomycin hydr 46.3 58 0.002 29.7 7.6 81 90-172 302-415 (453)
74 3del_B Arginine binding protei 45.9 16 0.00055 27.7 3.3 60 45-104 12-71 (242)
75 1vq8_G Acidic ribosomal protei 44.7 4.6 0.00016 35.7 0.0 76 3-80 142-224 (348)
76 3n5l_A Binding protein compone 44.5 28 0.00097 28.9 4.9 58 45-111 5-64 (310)
77 4dz1_A DALS D-alanine transpor 44.1 33 0.0011 26.6 5.0 62 45-106 30-91 (259)
78 3dtg_A Branched-chain amino ac 43.0 39 0.0013 29.5 5.8 33 72-104 278-310 (372)
79 2z84_A UFSP1, UFM1-specific pr 42.3 1.4E+02 0.0049 24.5 9.5 81 22-161 89-175 (218)
80 2zkr_g 60S acidic ribosomal pr 42.2 5.3 0.00018 34.8 0.0 76 3-80 138-220 (317)
81 3p7i_A PHND, subunit of alkylp 41.6 32 0.0011 29.0 4.8 62 40-110 10-73 (321)
82 1w41_A 50S ribosomal protein L 41.4 60 0.002 22.8 5.6 47 68-114 44-91 (101)
83 3qxc_A Dethiobiotin synthetase 39.8 1E+02 0.0036 25.0 7.6 24 22-45 34-57 (242)
84 3cpq_A 50S ribosomal protein L 39.5 70 0.0024 22.9 5.8 47 68-114 49-96 (110)
85 2i5g_A Amidohydrolase; NYSGXRC 39.3 1.2E+02 0.0039 26.1 8.1 72 25-110 20-91 (325)
86 4d8b_A Streptopain; papain fol 38.2 41 0.0014 28.4 4.9 14 135-148 192-205 (261)
87 3kzg_A Arginine 3RD transport 38.0 50 0.0017 24.9 5.1 59 46-104 5-64 (237)
88 4i62_A Amino acid ABC transpor 37.5 38 0.0013 25.8 4.4 59 45-103 40-101 (269)
89 3k4u_A Binding component of AB 37.3 26 0.0009 26.7 3.3 59 46-104 7-65 (245)
90 4a18_G RPL30; ribosome, eukary 37.0 79 0.0027 22.4 5.7 48 68-115 50-98 (104)
91 4h5g_A Amino acid ABC superfam 36.2 25 0.00086 27.2 3.1 58 46-104 14-75 (243)
92 3fgn_A Dethiobiotin synthetase 35.4 42 0.0014 27.7 4.5 24 22-45 39-62 (251)
93 3kbr_A Cyclohexadienyl dehydra 32.9 23 0.00078 26.7 2.3 58 47-104 18-75 (239)
94 3h7m_A Sensor protein; histidi 32.8 22 0.00076 26.5 2.2 60 47-106 14-73 (234)
95 2iee_A ORF2, probable ABC tran 32.5 25 0.00087 27.6 2.6 58 47-104 24-84 (271)
96 3i6v_A Periplasmic His/Glu/Gln 32.4 23 0.0008 27.0 2.3 59 46-104 7-65 (232)
97 2lnd_A De novo designed protei 31.5 1E+02 0.0035 22.1 5.4 49 64-113 8-61 (112)
98 3unf_H Proteasome subunit beta 31.2 28 0.00095 28.4 2.7 24 137-160 95-118 (234)
99 3mpk_A Virulence sensor protei 30.7 46 0.0016 26.0 3.9 62 46-107 34-96 (267)
100 3u5i_q A0, L10E, 60S acidic ri 30.5 6.6 0.00022 34.1 -1.3 77 3-81 136-219 (312)
101 3qax_A Probable ABC transporte 30.0 38 0.0013 25.8 3.2 60 45-104 32-91 (268)
102 3hv1_A Polar amino acid ABC up 29.9 24 0.00084 27.3 2.1 58 47-104 24-81 (268)
103 2rag_A Dipeptidase; aminohydro 29.2 1.7E+02 0.0057 26.1 7.7 78 27-109 79-156 (417)
104 1wdn_A GLNBP, glutamine bindin 29.1 37 0.0013 25.0 2.9 57 47-104 6-62 (226)
105 1dki_A Pyrogenic exotoxin B zy 28.6 86 0.0029 27.5 5.6 14 136-149 311-324 (371)
106 1pq4_A Periplasmic binding pro 28.5 78 0.0027 26.4 5.1 62 30-108 200-265 (291)
107 1tqx_A D-ribulose-5-phosphate 27.4 1.1E+02 0.0038 24.8 5.7 50 49-104 146-196 (227)
108 3iz5_s 60S acidic ribosomal pr 27.3 22 0.00076 30.8 1.5 62 17-80 161-223 (319)
109 3gi1_A LBP, laminin-binding pr 27.2 1.4E+02 0.0049 24.7 6.6 58 30-101 189-248 (286)
110 2pvu_A ARTJ; basic amino acid 27.1 67 0.0023 24.9 4.2 58 46-104 44-101 (272)
111 3cx3_A Lipoprotein; zinc-bindi 26.8 1.4E+02 0.0048 24.6 6.4 58 30-101 187-246 (284)
112 3nzj_H Proteasome component PU 26.3 38 0.0013 28.1 2.7 23 138-160 125-147 (261)
113 3cg0_A Response regulator rece 26.1 1E+02 0.0036 20.8 4.7 42 72-114 23-64 (140)
114 4f3p_A Glutamine-binding perip 26.0 46 0.0016 25.4 3.0 58 46-104 26-83 (249)
115 3bv8_A Tetrahydrodipicolinate 25.1 1.5E+02 0.005 21.1 5.3 30 89-118 3-34 (87)
116 2qr3_A Two-component system re 25.0 1.6E+02 0.0054 19.8 5.5 41 72-114 17-57 (140)
117 2yln_A Putative ABC transporte 24.5 37 0.0013 27.0 2.3 60 45-104 58-117 (283)
118 4aie_A Glucan 1,6-alpha-glucos 24.3 84 0.0029 27.6 4.8 55 30-86 38-97 (549)
119 1ii5_A SLR1257 protein; membra 24.3 1.1E+02 0.0037 22.5 4.8 29 76-104 37-66 (233)
120 3bb7_A Interpain A; cysteine p 24.1 72 0.0025 27.5 4.2 15 135-149 264-278 (321)
121 1pb7_A N-methyl-D-aspartate re 23.9 34 0.0012 27.6 1.9 57 47-103 44-117 (292)
122 3lte_A Response regulator; str 23.7 1.5E+02 0.0052 19.7 5.2 47 67-115 15-61 (132)
123 3cg4_A Response regulator rece 23.5 1.8E+02 0.006 19.7 6.3 48 66-115 15-62 (142)
124 3cnb_A DNA-binding response re 23.0 1.7E+02 0.006 19.6 5.4 43 72-115 22-65 (143)
125 1i2k_A 4-amino-4-deoxychorisma 22.7 59 0.002 26.5 3.2 26 72-97 203-228 (269)
126 1q98_A Thiol peroxidase, TPX; 22.6 94 0.0032 22.6 4.1 45 134-190 40-84 (165)
127 2prs_A High-affinity zinc upta 22.5 1.9E+02 0.0064 23.7 6.4 57 30-101 184-243 (284)
128 1tp9_A Peroxiredoxin, PRX D (t 22.3 48 0.0016 24.4 2.4 46 135-191 33-81 (162)
129 3j21_k Acidic ribosomal protei 22.2 15 0.00051 32.1 -0.6 63 17-81 160-223 (339)
130 3hzh_A Chemotaxis response reg 22.1 1.3E+02 0.0044 21.3 4.7 51 64-115 42-94 (157)
131 3vi6_A 60S ribosomal protein L 22.0 2E+02 0.0067 21.2 5.7 48 68-115 55-103 (125)
132 3iz5_f 60S ribosomal protein L 21.6 1.1E+02 0.0037 22.2 4.1 47 68-114 54-101 (112)
133 3grc_A Sensor protein, kinase; 21.2 1.8E+02 0.0061 19.7 5.2 48 65-114 13-60 (140)
134 2j48_A Two-component sensor ki 20.8 1.5E+02 0.0053 18.8 4.6 46 67-114 10-55 (119)
135 2qv0_A Protein MRKE; structura 20.8 2E+02 0.0069 19.5 5.4 33 82-115 34-66 (143)
136 2xpf_A 4-amino-4-deoxychorisma 20.8 68 0.0023 26.7 3.3 27 72-98 224-250 (292)
137 3h5i_A Response regulator/sens 20.7 2.1E+02 0.0071 19.5 5.5 42 72-114 19-60 (140)
138 3j21_Z 50S ribosomal protein L 20.7 46 0.0016 23.4 1.9 47 68-114 43-90 (99)
139 3b40_A PVDM, probable dipeptid 20.6 3.2E+02 0.011 24.3 7.8 81 26-109 48-135 (417)
140 3csw_A BCAT, putative branched 20.6 69 0.0024 26.6 3.2 26 72-97 206-231 (285)
141 4eq9_A ABC transporter substra 20.5 88 0.003 23.3 3.6 57 46-103 10-67 (246)
142 3daa_A D-amino acid aminotrans 20.4 67 0.0023 26.6 3.1 26 72-97 207-232 (277)
143 3cu2_A Ribulose-5-phosphate 3- 20.3 1.1E+02 0.0037 25.1 4.3 51 49-103 156-211 (237)
144 1itu_A Renal dipeptidase; glyc 20.2 2.3E+02 0.008 24.8 6.7 74 27-109 49-122 (369)
145 2pyy_A Ionotropic glutamate re 20.1 1.4E+02 0.0047 21.8 4.6 28 77-104 34-62 (228)
146 3u0g_A Putative branched-chain 20.0 72 0.0025 27.3 3.3 26 72-97 245-270 (328)
No 1
>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis}
Probab=99.59 E-value=7.7e-15 Score=125.04 Aligned_cols=150 Identities=24% Similarity=0.293 Sum_probs=107.4
Q ss_pred HHHhhhcCCceeHHHHHHHHhhcCccee-------eee-----cccCCCCCCCcchhhcccc--cchhhH--HHHHHHHH
Q 029371 15 GLAEQCCTTSIWTVDLAYLLQKFNVGFS-------YFT-----ITLGANPNYSVETFYKEQL--PTDLVR--VDMLFQKA 78 (194)
Q Consensus 15 ~l~~~c~~~S~WTIDLaylL~~~gv~~~-------f~T-----~tlG~np~y~~~~fY~~~~--~~D~~R--V~~lF~~A 78 (194)
++...|..+| ||++|+..|++++ ..+ +....||+ +.|-.+.+ +....- -..+++.|
T Consensus 45 ~~~~gCe~tS-----lam~L~y~G~~~~~~~la~~l~~~p~~~~g~~gnP~---~gFvG~p~~~~~~g~giy~~~i~~~a 116 (236)
T 3erv_A 45 ELDRGCEVTS-----LAMMLQYAGITVDKMKLANEIKKVDFMNDGVRGNPN---EGFVGNIYTFSESGYGVYHGPLFQLA 116 (236)
T ss_dssp TCTTCHHHHH-----HHHHHHHTTCCCCHHHHHHHSCEECSEETTEECCTT---TSEEBCSSCTTSCBCCCCHHHHHHHH
T ss_pred CCCCCCHHHH-----HHHHHHHcCcCCCHHHHHHHHhhCcccccCCCCCCc---cCccCCccccCCCcceeecHHHHHHH
Confidence 4456688888 9999999999875 212 22345777 55544432 111111 26789999
Q ss_pred HHcCC--ceEeccccHHHHHHHHHcCCcEEEEEEcCCCcccc------ccccccccCccCCCCCCcceEEEEEEeeCCCc
Q 029371 79 RSAGI--KIECGSISGVEISLMILSGNYIAIALVDQYKLSHS------WMEDVIVPGFYGSDSGYTGHYILICGYDANSD 150 (194)
Q Consensus 79 ~~~gi--~v~~rsvs~~eI~~~L~~G~~~~IvLvd~~~L~~~------~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~ 150 (194)
++.+. .+.....|+++|.+.|++|+ ||||+++..+-..+ |..+ .+ .....+.+|||||+|||..
T Consensus 117 ~~y~~~~~~dltG~sl~~L~~~I~~G~-PVIv~~t~~~~p~~~~~~~~W~~~---~G--~~~~~~~~H~VVl~GYd~~-- 188 (236)
T 3erv_A 117 KKYLPNKAVDLTGKSIEELYKSVKAGQ-PVVIITNATFAPLDEDEFTTWETN---NG--DVSITYNEHCVVLIGYDQE-- 188 (236)
T ss_dssp HHHCTTTEEECTTSCHHHHHHHHHTTC-CEEEEEETTSSCCCGGGCEEEEET---TE--EEEECTTEEEEEEEEECSS--
T ss_pred HHHhhcceeecCCCCHHHHHHHHHCCC-eEEEEEeCCcccccccccceeecC---CC--ceeeccCCeEEEEEEEeCC--
Confidence 99863 45567779999999999996 99999988753211 1100 00 0112489999999999984
Q ss_pred eEEEeCCCCCCceeeeChHHHHHHHhhCCC
Q 029371 151 EFEIRDPASCRKREKVTLKCLEEARKSFGT 180 (194)
Q Consensus 151 ~~~~~DPa~~~~~~~~s~~~~e~AR~s~GT 180 (194)
.++++||+...+...++.+.||++|.+.|.
T Consensus 189 ~vyi~DP~~g~~~~~vs~~eFe~~w~~~G~ 218 (236)
T 3erv_A 189 SVYIRDPLKDSLDVKVPREKFEQAWVQMGS 218 (236)
T ss_dssp EEEEECTTSCCSCCEEEHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCccEEEcHHHHHHHHHhcCC
Confidence 699999999876788999999999999997
No 2
>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.63 E-value=4.5e-08 Score=73.34 Aligned_cols=108 Identities=18% Similarity=0.116 Sum_probs=77.3
Q ss_pred eHHHHHHHHhhcCcceeeeec--ccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCC
Q 029371 26 WTVDLAYLLQKFNVGFSYFTI--TLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGN 103 (194)
Q Consensus 26 WTIDLaylL~~~gv~~~f~T~--tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~ 103 (194)
|---|+++++++|++++--.. .++.++ ++.-...+-+.|++.|........+.++|... .
T Consensus 8 gla~L~~i~~~~g~~~~~~~l~~~~~~~~--------------~g~s~~~l~~~a~~~Gl~~~~~~~~~~~L~~l---~- 69 (129)
T 3b79_A 8 LLNSLIYVSRYYGLANSPEALVNGLPLSD--------------GKLTPFLLPRAAERAGLVAKENRAELEKISSL---I- 69 (129)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHTTCCCBT--------------TBCCTTTHHHHHHHHTEEEEEEECCGGGSCGG---G-
T ss_pred HHHHHHHHHHHhCCCCCHHHHHhcCCCcC--------------CCCCHHHHHHHHHHCCCeEEEEECCHHHCCcC---C-
Confidence 444589999999987763332 222111 12222456788999999877666777776431 2
Q ss_pred cEEEEEEcCCCccccccccccccCccCCCCCCcceEEEEEEeeCCCceEEEeCCCCCCceeeeChHHHHHHH
Q 029371 104 YIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDPASCRKREKVTLKCLEEAR 175 (194)
Q Consensus 104 ~~~IvLvd~~~L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~~~~~~DPa~~~~~~~~s~~~~e~AR 175 (194)
.|+|++.+ .||||||.|+|.+.+.+.+.||+.......++.+.|++.|
T Consensus 70 lP~I~~~~------------------------~~h~vVl~~~~~~~~~~~i~dp~~~~g~~~~~~~ef~~~w 117 (129)
T 3b79_A 70 LPAILVLK------------------------GGDSCVLNSINMETREAEVTTLESGMVPISIPLEDLLEQY 117 (129)
T ss_dssp CSEEEEEG------------------------GGEEEEEEEEETTTTEEEEECTTTTTSCEEEEHHHHHHHE
T ss_pred CCEEEEEc------------------------CCCEEEEEEEcCCCceEEEEccCCCCCcEEeeHHHHHhhC
Confidence 58997764 3699999999987667999999966667889999999999
No 3
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=98.39 E-value=6.5e-07 Score=69.75 Aligned_cols=119 Identities=13% Similarity=0.115 Sum_probs=80.1
Q ss_pred HHHHHHhhcCcceeeeec--ccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCcEE
Q 029371 29 DLAYLLQKFNVGFSYFTI--TLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIA 106 (194)
Q Consensus 29 DLaylL~~~gv~~~f~T~--tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~~~ 106 (194)
-|+++++.+|.+++--.. .++. +.++.-...+-+.|++.|........+.+++ .|.+-+.|+
T Consensus 21 cLa~i~~~~g~~~s~~~L~~~~~~--------------~~~g~s~~~l~~~a~~~Gl~a~~~~~~~~~~--~l~~~~lP~ 84 (156)
T 3k8u_A 21 VLASVAKHYGSNYSIAYLRELSKT--------------NKQGTTALGIVEAAKKLGFETRSIKADMTLF--DYNDLTYPF 84 (156)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHTTC--------------BTTBCCHHHHHHHHHHTTEEEEEEECCGGGG--GCTTCCSCE
T ss_pred HHHHHHHHhCCCCCHHHHHHHcCC--------------CCCCcCHHHHHHHHHHCCCeeEEEEeehhhh--hHhcCCCCE
Confidence 389999999987652221 1111 1122333667788999999776555666522 123333699
Q ss_pred EEEEcCCCccccccccccccCccCCCCCCcceEEEEEEeeCCCceEEEeCCCCCCceeeeChHHHHHHHhhCCCCccEEE
Q 029371 107 IALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDLLL 186 (194)
Q Consensus 107 IvLvd~~~L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~~~~~~DPa~~~~~~~~s~~~~e~AR~s~GTDeDil~ 186 (194)
|++++.. +-.||||||.|++. +.+++.||+..+....+|.+.|++.|. ..+|+
T Consensus 85 I~~~~~~--------------------g~~~hfvVl~~~~~--~~v~I~DP~~g~~~~~ls~~ef~~~w~-----G~~l~ 137 (156)
T 3k8u_A 85 IVHVIKG--------------------KRLQHYYVVYGSQN--NQLIIGDPDPSVKVTRMSKERFQSEWT-----GLAIF 137 (156)
T ss_dssp EEEEEET--------------------TEEEEEEEEEEEET--TEEEEEECSTTTEEEEEEHHHHHHHEE-----EEEEE
T ss_pred EEEEEec--------------------CCCcEEEEEEEEcC--CEEEEEcCCCCcceEEEcHHHHHhhCc-----eEEEE
Confidence 9876532 02479999999995 469999999986677899999999993 35666
Q ss_pred EEcC
Q 029371 187 ISLE 190 (194)
Q Consensus 187 I~~~ 190 (194)
+...
T Consensus 138 ~~p~ 141 (156)
T 3k8u_A 138 LAPQ 141 (156)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 6543
No 4
>3zua_A CLD, alpha-hemolysin translocation ATP-binding protein; C39 peptidase-like domain, ABC transporter, haemolysin, HYDR heteronuclear; NMR {Escherichia coli}
Probab=98.14 E-value=7.9e-06 Score=62.56 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=79.7
Q ss_pred eHHHHHHHHhhcCcceeeeec--ccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCC
Q 029371 26 WTVDLAYLLQKFNVGFSYFTI--TLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGN 103 (194)
Q Consensus 26 WTIDLaylL~~~gv~~~f~T~--tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~ 103 (194)
|---|+++++++|++++--.. .++.+. ++.-...+-+.|++.|........+.++|.. -+
T Consensus 15 glacLa~i~~~~g~~~s~~~L~~~~~~~~--------------~g~s~~~l~~aa~~~Gl~a~~~~~~~~~L~~----l~ 76 (142)
T 3zua_A 15 GLYALEILAQYHNVSVNPEEIKHRFDTDG--------------TGLGLTSWLLAAKSLELKVKQVKKTIDRLNF----IS 76 (142)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHTCTTS--------------SCCCHHHHHHHHHTTTEEEEEEECCHHHHTT----SS
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHcCCCc--------------CCcCHHHHHHHHHHCCCeeEEeecCHHHHhc----CC
Confidence 444589999999987663332 222222 2233366778899999987776778877654 23
Q ss_pred cEEEEEEcCCCccccccccccccCccCCCCCCcceEEEEEEeeCCCceEEEeCCCCCCceeeeChHHHHHHHhhCCCCcc
Q 029371 104 YIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDED 183 (194)
Q Consensus 104 ~~~IvLvd~~~L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~~~~~~DPa~~~~~~~~s~~~~e~AR~s~GTDeD 183 (194)
.|+|++.+. ..|||| .+++.+.+.+++.||+... ...++.+.|++.|. ..
T Consensus 77 lP~Il~~~~-----------------------g~~~Vv-~~~~~~~~~~~I~dP~~g~-~~~~s~~ef~~~w~-----G~ 126 (142)
T 3zua_A 77 LPALVWRED-----------------------GRHFIL-TKVSKEANRYLIFDLEQRN-PRVLEQSEFEALYQ-----GH 126 (142)
T ss_dssp SSEEECCTT-----------------------SCCEEE-EEEETTTTEEEEEETTTTE-EEEEEHHHHHHHCC-----SE
T ss_pred CCEEEEEcC-----------------------CCEEEE-EEEeCCCCEEEEEcCCCCC-cEEecHHHHHhhCC-----CE
Confidence 699964311 136655 6899876789999999875 66799999999994 35
Q ss_pred EEEEEcC
Q 029371 184 LLLISLE 190 (194)
Q Consensus 184 il~I~~~ 190 (194)
+|++...
T Consensus 127 ~l~~~~~ 133 (142)
T 3zua_A 127 IILIASR 133 (142)
T ss_dssp EEEEEES
T ss_pred EEEEEEC
Confidence 6666543
No 5
>2bu3_A ALR0975 protein; phytochelatin synthase, PCS, acyl-enzyme intermedia nostoc, glutathione metabolism, cysteine protease, transfer; HET: 3GC; 1.4A {Anabaena SP} SCOP: d.3.1.14 PDB: 2btw_A* 2btw_B
Probab=96.96 E-value=0.011 Score=50.72 Aligned_cols=93 Identities=17% Similarity=0.169 Sum_probs=66.7
Q ss_pred hhhHHHHHHHHHHHcCCceEe---ccccHHHHHHHH----HcCCcEEEEEEcCCCccccccccccccCccCCCCCCcceE
Q 029371 67 DLVRVDMLFQKARSAGIKIEC---GSISGVEISLMI----LSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHY 139 (194)
Q Consensus 67 D~~RV~~lF~~A~~~gi~v~~---rsvs~~eI~~~L----~~G~~~~IvLvd~~~L~~~~~~~~~~~~~~~~~~~Y~GHY 139 (194)
++-=..++...|+..|+.++. ...|.+++.+.+ .+....+||-++...|.-. =.|||
T Consensus 132 ~GiTL~el~~La~c~G~~v~~y~a~~~sl~~fR~~v~~~~~~~~~~vvvny~R~~l~q~----------------G~GHf 195 (254)
T 2bu3_A 132 QGMTLDELGRLIASYGVKVKVNHASDTNIEDFRKQVAENLKQDGNFVIVNYLRKEIGQE----------------RGGHI 195 (254)
T ss_dssp HCCCHHHHHHHHHTTTCEEEEEEGGGSCHHHHHHHHHHHHTCTTEEEEEEEEGGGGTCS----------------SSEEE
T ss_pred CCcCHHHHHHHHHhCCceEEEEECCcCcHHHHHHHHHHHhCCCCcEEEEEeEccccCCC----------------CCCce
Confidence 333447788889999987652 456888875554 3333578877777766431 38999
Q ss_pred EEEEEeeCCCceEEEeCCCCCC-ceeeeChHHHHHHH
Q 029371 140 ILICGYDANSDEFEIRDPASCR-KREKVTLKCLEEAR 175 (194)
Q Consensus 140 VVLcGYd~~~~~~~~~DPa~~~-~~~~~s~~~~e~AR 175 (194)
--|-|||++++.+.+.|+|... .---|+.+.|=+|=
T Consensus 196 SPIggY~~~~D~vLIlDVar~kYpp~WV~~~~L~~Am 232 (254)
T 2bu3_A 196 SPLAAYNEQTDRFLIMDVSRYKYPPVWVKTTDLWKAM 232 (254)
T ss_dssp EEEEEEETTTTEEEECCSCTTTCCCEEEEHHHHHHHH
T ss_pred eceeeEcCCCCeEEEEecCccCCCCEeeeHHHHHHHH
Confidence 9999999999999999999643 34447777665553
No 6
>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A
Probab=96.30 E-value=0.031 Score=45.66 Aligned_cols=93 Identities=14% Similarity=0.147 Sum_probs=64.2
Q ss_pred CCCCcchhhcccccchhhHHHHHHHHHHHcC--CceEeccccHHHHHHHHHcCCcEEEEEEcCCCccccccccccccCcc
Q 029371 52 PNYSVETFYKEQLPTDLVRVDMLFQKARSAG--IKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFY 129 (194)
Q Consensus 52 p~y~~~~fY~~~~~~D~~RV~~lF~~A~~~g--i~v~~rsvs~~eI~~~L~~G~~~~IvLvd~~~L~~~~~~~~~~~~~~ 129 (194)
|+-+.+.|=...+.-++ .-+-++..| +.++.|..|.+|++..+.+++ |+.++.+..-=
T Consensus 62 PN~s~~~l~~t~~~~~q-----~Iky~~s~G~~~~~~nr~ls~neV~~~i~~Nk-~I~v~~~~v~e-------------- 121 (183)
T 1pxv_A 62 PEVSEQDLPNCATFPNQ-----MIEYGKSQGRDIHYQEGVPSYNQVDQLTKDNV-GIMILAQSVSQ-------------- 121 (183)
T ss_dssp TTSCTTTGGGCCBCHHH-----HHHHHHHTTCCCEEEESCCCHHHHHHHHHTTC-CEEEEEECCCS--------------
T ss_pred CCCChhHHhhcCCCHHH-----HHHHHHHcCcChhHhcCCCCHHHHHHHHhcCC-cEEEEcccccc--------------
Confidence 66666655544454444 444444555 679999999999999999998 66655543311
Q ss_pred CCCCCCcceEEEEEEeeCCCc--eEEEeCCCCCCcee
Q 029371 130 GSDSGYTGHYILICGYDANSD--EFEIRDPASCRKRE 164 (194)
Q Consensus 130 ~~~~~Y~GHYVVLcGYd~~~~--~~~~~DPa~~~~~~ 164 (194)
+.+....||=+||+||-...+ .+++=||=...-.+
T Consensus 122 ~~~~~~~gHA~av~Gya~~~~~~~y~~WNPW~~~~~~ 158 (183)
T 1pxv_A 122 NPNDPHLGHALAVVGNAKINDQEKLIYWNPWDTELSI 158 (183)
T ss_dssp STTSCCCEEEEEEEEEEEETTEEEEEEECTTCSSCEE
T ss_pred CCCCccCceeEEEEeeeecCCCeEEEEeCCccCCcEe
Confidence 233458999999999987765 57788887765444
No 7
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A*
Probab=95.35 E-value=0.034 Score=45.27 Aligned_cols=67 Identities=6% Similarity=0.010 Sum_probs=41.4
Q ss_pred ccHHHHHHHHHcCCcEEEEEEcCCCccccccccccccCccCCCCCCcceEEEEEEeeCCCce--EEEeCC
Q 029371 90 ISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDE--FEIRDP 157 (194)
Q Consensus 90 vs~~eI~~~L~~G~~~~IvLvd~~~L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~~--~~~~DP 157 (194)
-+.++|++.|.++ +|+.+-+|+.--.-...+.+.....+.......+|-|+|+||+.+.+. ++++|-
T Consensus 119 ~~~~~ik~~l~~~-gPV~~~~~~~~~f~~Y~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~g~~yWivkNS 187 (220)
T 8pch_A 119 NDEEAMVEAVALY-NPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNS 187 (220)
T ss_dssp TCHHHHHHHHHHT-CCEEEEECCCHHHHTCCSSEECCSSCCCSTTTCCEEEEEEEEEEETTEEEEEEECS
T ss_pred CCHHHHHHHHHhc-CCEEEEEEeccchhhcCCCcccCCcCCCCCCcCCcEEEEEEEEccCCeeEEEEECC
Confidence 4688999999876 388898988620000111222222222233467999999999977644 666763
No 8
>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1
Probab=95.22 E-value=0.1 Score=42.36 Aligned_cols=92 Identities=16% Similarity=0.150 Sum_probs=61.9
Q ss_pred CCCCcchhhcccccchhhHHHHHHHHHHHcC--CceEeccccHHHHHHHHHcCCcEEEEEEcCCCccccccccccccCcc
Q 029371 52 PNYSVETFYKEQLPTDLVRVDMLFQKARSAG--IKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFY 129 (194)
Q Consensus 52 p~y~~~~fY~~~~~~D~~RV~~lF~~A~~~g--i~v~~rsvs~~eI~~~L~~G~~~~IvLvd~~~L~~~~~~~~~~~~~~ 129 (194)
|+-+.+.|=.+.+.. ++.++-++..| +.++.|.+|.+|++..+.++++++| +.|.. .
T Consensus 53 Pn~S~~~l~~~~~t~-----~e~iky~~s~g~~~~~~n~~ls~~eV~~~~~~nk~i~i-~~~~v--e------------- 111 (174)
T 1cv8_A 53 PNLQGQQFQFTGLTP-----REMIYFGQTQGRSPQLLNRMTTYNEVDNLTKNNKGIAI-LGSRV--E------------- 111 (174)
T ss_dssp SSCCHHHHHHCCCCH-----HHHHHHHHHTTCCCEEESSCCCHHHHHHHHHTTCCEEE-EEEES--S-------------
T ss_pred CCCCHHHHhhcCCCH-----HHHHHHHHHcCCChhhhcCCCCHHHHHHHHhcCCceEE-Ecccc--c-------------
Confidence 555544444333333 35667777777 4688999999999999999984444 43332 0
Q ss_pred CCCCCCcceEEEEEEeeCCC---ceEEEeCCCCCCcee
Q 029371 130 GSDSGYTGHYILICGYDANS---DEFEIRDPASCRKRE 164 (194)
Q Consensus 130 ~~~~~Y~GHYVVLcGYd~~~---~~~~~~DPa~~~~~~ 164 (194)
..+....||=+||+||-... +.++|=||=..+-.+
T Consensus 112 ~~~~~~~gHAlav~Gy~~~~ng~~~y~~WNPW~~~~~~ 149 (174)
T 1cv8_A 112 SRNGMHAGHAMAVVGNAKLNNGQEVIIIWNPWDNGFMT 149 (174)
T ss_dssp CBTTBCCEEEEEEEEEEEETTSCEEEEEECTTCSSCEE
T ss_pred CCCCCCCceeEEEEeeeeecCCceEEEEeCCccCCcEE
Confidence 11234899999999998853 367888887765543
No 9
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0
Probab=93.76 E-value=0.14 Score=41.89 Aligned_cols=64 Identities=14% Similarity=0.212 Sum_probs=38.6
Q ss_pred ccHHHHHHHHHcCCcEEEEEEcCCC--ccccccc-cccccCccCCCCCCcceEEEEEEeeCCC---ceEEEeC
Q 029371 90 ISGVEISLMILSGNYIAIALVDQYK--LSHSWME-DVIVPGFYGSDSGYTGHYILICGYDANS---DEFEIRD 156 (194)
Q Consensus 90 vs~~eI~~~L~~G~~~~IvLvd~~~--L~~~~~~-~~~~~~~~~~~~~Y~GHYVVLcGYd~~~---~~~~~~D 156 (194)
.+.++|++.|.+| |+.|-+|+.- +. .... .+.....+..++...+|-|+|+||+.+. +-++++|
T Consensus 114 ~~~~~i~~~l~~G--PV~v~i~~~~~~f~-~Y~~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~~g~~yWivkN 183 (222)
T 3u8e_A 114 NSSSALLDAVAKQ--PVSVNIYTSSTSFQ-LYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNADYWIVKN 183 (222)
T ss_dssp SCHHHHHHHHHHS--CEEEEECCCSHHHH-TCCCSSCBCCTTCCCCGGGCCEEEEEEEEEESSTTCEEEEEEC
T ss_pred CcHHHHHHHHhCC--CEEEEEEecChhhh-cEeCCceECCCcccCCCCcCCEEEEEEEEeecCCCCcEEEEEC
Confidence 5678899999777 7777888752 11 1111 2222212222233579999999999764 3466666
No 10
>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid, hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1 d.17.1.4
Probab=93.11 E-value=0.37 Score=43.10 Aligned_cols=79 Identities=11% Similarity=0.128 Sum_probs=58.5
Q ss_pred HHHHHHHHHHcCC--ceEeccccHHHHHHHHHcCCcEEEEEEcCCCccccccccccccCccCCCCCCcceEEEEEEeeCC
Q 029371 71 VDMLFQKARSAGI--KIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDAN 148 (194)
Q Consensus 71 V~~lF~~A~~~gi--~v~~rsvs~~eI~~~L~~G~~~~IvLvd~~~L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~ 148 (194)
.++.++-+++.|. ..+.|..|.+|++..+.+++ |++++.+..-= +.+....||=+||+||-..
T Consensus 252 ~~q~Iky~qsyG~~~~~~n~~ls~deVk~~id~Nk-~I~v~~~~v~~--------------~~n~~~~gHAlavvGyA~~ 316 (367)
T 1x9y_A 252 PNQMIEYGKSQGRDIHYQEGVPSYNQVDQLTKDNV-GIMILAQSVSQ--------------NPNDPHLGHALAVVGNAKI 316 (367)
T ss_dssp HHHHHHHHHHTTEEEEEEESCCCHHHHHHHHHTTC-CEEEEEEETTS--------------CSSSCCCSEEEEEEEEEEE
T ss_pred HHHHHHHHHHhCcchhhhcCCCCHHHHHHHHhcCC-cEEEEcccccc--------------CCCCccCceeEEEEecccc
Confidence 3567888888886 57799999999999998886 77777665411 1234489999999999554
Q ss_pred C--ceEEEeCCCCCCcee
Q 029371 149 S--DEFEIRDPASCRKRE 164 (194)
Q Consensus 149 ~--~~~~~~DPa~~~~~~ 164 (194)
. ..++|=||=..+-.+
T Consensus 317 ~~~~~y~~WNPW~~~~~~ 334 (367)
T 1x9y_A 317 NDQEKLIYWNPWDTELSI 334 (367)
T ss_dssp TTEEEEEEECTTCSSCEE
T ss_pred CCCcEEEEecCccCCcee
Confidence 4 457888887765444
No 11
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ...
Probab=93.02 E-value=0.19 Score=40.63 Aligned_cols=62 Identities=11% Similarity=0.075 Sum_probs=39.2
Q ss_pred ccHHHHHHHHHcCCcEEEEEEcCCC--ccccccccccccCccCCCCCCcceEEEEEEeeCCCce--EEEeC
Q 029371 90 ISGVEISLMILSGNYIAIALVDQYK--LSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDE--FEIRD 156 (194)
Q Consensus 90 vs~~eI~~~L~~G~~~~IvLvd~~~--L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~~--~~~~D 156 (194)
.+.++|++.|.++ +|+.+-+|+.. +.- ..+.+..... + ....+|-|+|+||+.+.++ ++++|
T Consensus 120 ~~~~~ik~~l~~~-gPV~v~~~~~~~~f~~-y~~Giy~~~~-~--~~~~~HaV~iVGyg~~~g~~ywivkN 185 (218)
T 3ovx_A 120 GREDVLKEAVANK-GPVSVGVDARHPSFFL-YRSGVYYEPS-C--TQNVNHGVLVVGYGDLNGKEYWLVKN 185 (218)
T ss_dssp TCHHHHHHHHHHT-CCEEEEECCCSHHHHH-CCSSEECCTT-C--CSCCCEEEEEEEEEEETTEEEEEEEC
T ss_pred CCHHHHHHHHHhc-CCEEEEEEecchhhhc-ccCceecCCC-C--CcccCcEEEEEEEeccCCceEEEEEC
Confidence 3678899999986 38888888863 111 1111111111 1 3567999999999976533 66666
No 12
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ...
Probab=92.64 E-value=0.31 Score=39.49 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=37.7
Q ss_pred cHHHHHHHHHcCCcEEEEEEcCCCccccccccccccCccCCCCCCcceEEEEEEeeCCCc--eEEEeCC
Q 029371 91 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSD--EFEIRDP 157 (194)
Q Consensus 91 s~~eI~~~L~~G~~~~IvLvd~~~L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~--~~~~~DP 157 (194)
+.++|++.|.++ +|+.+-+|+.-+.- ..+.+. ..+ .....+|-|+|+||+.+.+ =++++|-
T Consensus 121 ~~~~ik~~l~~~-gPV~v~~~~~~f~~-Y~~Giy-~~~---~~~~~~HaV~iVGyg~~~g~~yWivkNS 183 (215)
T 3i06_A 121 DEAQIAAWLAVN-GPVAVAVDASSWMT-YTGGVM-TSC---VSEQLDHGVLLVGYNDSAAVPYWIIKNS 183 (215)
T ss_dssp CHHHHHHHHHHH-CCEEEEECCTTGGG-CCSSEE-CSC---CCSCCCEEEEEEEEESSSSSCEEEEECS
T ss_pred hHHHHHHHHHHC-CCEEEEEEchHHhc-CCCCcc-cCC---CCCccCcEEEEEEEeccCCcEEEEEECC
Confidence 678899999875 37888888742211 111111 111 1234699999999998754 3666663
No 13
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1
Probab=91.21 E-value=0.45 Score=38.67 Aligned_cols=60 Identities=13% Similarity=0.216 Sum_probs=36.7
Q ss_pred cHHHHHHHHHcCCcEEEEEEcCCC--ccccccccccccCccCCCCCCcceEEEEEEeeCCCc--eEEEeCC
Q 029371 91 SGVEISLMILSGNYIAIALVDQYK--LSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSD--EFEIRDP 157 (194)
Q Consensus 91 s~~eI~~~L~~G~~~~IvLvd~~~--L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~--~~~~~DP 157 (194)
+.++|++.|.+| |+.|-+++.- +. ...+.+.... +. ...+|-|+|+||+.+.+ =++++|-
T Consensus 116 ~~~~ik~~l~~G--PV~v~i~~~~~~f~-~Y~~Gvy~~~--c~--~~~~HaV~iVGyg~~~g~~yWivkNS 179 (215)
T 1iwd_A 116 NESALQSAVASQ--PVSVTVEAAGAPFQ-HYSSGIFTGP--CG--TAQNHGVVIVGYGTQSGKNYWIVRNS 179 (215)
T ss_dssp CHHHHHHHHHHS--CEEEEECCCSHHHH-TCCSSEECCC--CC--CCCCEEEEEEEEEEETTEEEEEEECS
T ss_pred cHHHHHHHHHhC--CEEEEEecCCcchh-hcCCceECCC--CC--CcCCEEEEEEEEeccCCccEEEEEeC
Confidence 567888888876 7778888752 11 1111222221 11 25799999999997643 3666663
No 14
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ...
Probab=91.13 E-value=0.52 Score=38.21 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=37.8
Q ss_pred cHHHHHHHHHcCCcEEEEEEcCCC--ccccccccccccCccCCCCCCcceEEEEEEee----CCC--ceEEEeC
Q 029371 91 SGVEISLMILSGNYIAIALVDQYK--LSHSWMEDVIVPGFYGSDSGYTGHYILICGYD----ANS--DEFEIRD 156 (194)
Q Consensus 91 s~~eI~~~L~~G~~~~IvLvd~~~--L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd----~~~--~~~~~~D 156 (194)
+.++|++.|.++ +|+.|-+++.. +.- ..+.+..... +. ....+|-|+|+||+ .+. +=++++|
T Consensus 118 ~~~~ik~~l~~~-GPV~v~~~~~~~~f~~-Y~~Gvy~~~~-c~-~~~~~HaV~iVGygd~~~~~~g~~yWivkN 187 (220)
T 2xu3_A 118 QEKALMKAVATV-GPISVAIDAGHESFLF-YKEGIYFEPD-CS-SEDMDHGVLVVGYGFESTESDNNKYWLVKN 187 (220)
T ss_dssp CHHHHHHHHHHT-CCEEEEECCCSHHHHT-CCSSEECCTT-CC-SSCCCEEEEEEEEEECCCSSSCCEEEEEEC
T ss_pred CHHHHHHHHHhc-CCEEEEEeecCccccc-ccceEEcCCC-CC-CCCCCeEEEEEEcCCccccCCCCcEEEEEe
Confidence 688999999885 38888888762 110 1112221111 11 24679999999999 432 2366666
No 15
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ...
Probab=91.13 E-value=0.47 Score=38.24 Aligned_cols=63 Identities=13% Similarity=0.142 Sum_probs=38.7
Q ss_pred ccHHHHHHHHHcCCcEEEEEEcCCC--ccccccccccccCccCCCCCCcceEEEEEEeeCCCc--eEEEeC
Q 029371 90 ISGVEISLMILSGNYIAIALVDQYK--LSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSD--EFEIRD 156 (194)
Q Consensus 90 vs~~eI~~~L~~G~~~~IvLvd~~~--L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~--~~~~~D 156 (194)
.+.++|++.|.++ +|+.+-+|+.. +.- ..+.+.....+ .....+|-|+|+||+.+.+ -++++|
T Consensus 116 ~~~~~ik~~l~~~-gPV~v~~~~~~~~f~~-y~~Giy~~~~~--~~~~~~HaV~iVGyg~~~g~~yWivkN 182 (215)
T 3kwz_A 116 GNEKALKRAVARV-GPVSVAIDASLTSFQF-YSKGVYYDESC--NSDNLNHAVLAVGYGIQKGNKHWIIKN 182 (215)
T ss_dssp TCHHHHHHHHHHT-CCEEEEECCCSHHHHT-CCSSEECCTTC--CTTCCCEEEEEEEEEEETTEEEEEEEC
T ss_pred CCHHHHHHHHHHC-CCEEEEEeechhhhhc-ccCCeECCCCC--CCChhhCEEEEEEEeccCCceEEEEEC
Confidence 3678999999886 38888888761 111 11112111111 1246799999999996543 366666
No 16
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1
Probab=90.78 E-value=0.41 Score=39.01 Aligned_cols=60 Identities=8% Similarity=0.184 Sum_probs=36.8
Q ss_pred cHHHHHHHHHcCCcEEEEEEcCCC--ccccccccccccCccCCCCCCcceEEEEEEeeCCCc--eEEEeCC
Q 029371 91 SGVEISLMILSGNYIAIALVDQYK--LSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSD--EFEIRDP 157 (194)
Q Consensus 91 s~~eI~~~L~~G~~~~IvLvd~~~--L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~--~~~~~DP 157 (194)
+.++|++.|.+| |+.|-+|+.- +. ...+.+.... +. ...+|-|+|+||+.+.+ =++++|-
T Consensus 119 ~~~~i~~~l~~G--PV~v~i~~~~~~f~-~Y~~Giy~~~--~~--~~~~HaV~iVGyg~~~g~~yWivkNS 182 (221)
T 1cqd_A 119 NEQSLQKAVANQ--PVSVTMDAAGRDFQ-LYRSGIFTGS--CN--ISANHALTVVGYGTENDKDFWIVKNS 182 (221)
T ss_dssp CHHHHHHHHTTS--CEEEEECCCSHHHH-TCCSSEECCC--CC--CCCCEEEEEEEEEEETTEEEEEEECS
T ss_pred hHHHHHHHHHhC--CEEEEEeccCcccc-cccCccccCC--CC--CcCCeEEEEEEEcccCCCcEEEEEeC
Confidence 577899988765 7788888751 11 0111222221 11 25899999999997643 3666664
No 17
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa}
Probab=90.08 E-value=0.56 Score=39.84 Aligned_cols=79 Identities=18% Similarity=0.149 Sum_probs=46.7
Q ss_pred cHHHHHHHHHcCCcEEEEEEcCC--Ccccccccc-ccccCccCCCCCCcceEEEEEEeeCCCceEEEeCCCCCC----ce
Q 029371 91 SGVEISLMILSGNYIAIALVDQY--KLSHSWMED-VIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDPASCR----KR 163 (194)
Q Consensus 91 s~~eI~~~L~~G~~~~IvLvd~~--~L~~~~~~~-~~~~~~~~~~~~Y~GHYVVLcGYd~~~~~~~~~DPa~~~----~~ 163 (194)
+.++|++.|.++ +|+.+-++.. +..- ... -......+......+|-|+|+||+...+-++++|-=-.. -.
T Consensus 190 ~e~~i~~al~~~-gPV~v~~~~~~~f~~y--~~~~Gi~~~~~~~~~~~~~Hav~iVGy~~~~~ywivkNSWG~~WG~~Gy 266 (291)
T 3ois_A 190 DIDHLKACLAVG-SPFVFGFSVYNSWVGN--NSLPVRIPLPTKNDTLEGGHAVLCVGYDDEIRHFRIRNSWGNNVGEDGY 266 (291)
T ss_dssp CHHHHHHHHHTT-CCEEEEEEEEHHHHGG--GCCCSBCCCCCTTSCEEEEEEEEEEEEETTTTEEEEECSBCTTSTBTTE
T ss_pred CHHHHHHHHHcC-CCEEEEEEeccchhhc--CCCCeEEeCCCCCCCCcCCeEEEEEEEeCCCCEEEEEeCCCCCCCCCcE
Confidence 788999999987 4777777654 1110 000 011111111112238999999999777778888843322 26
Q ss_pred eeeChHHHH
Q 029371 164 EKVTLKCLE 172 (194)
Q Consensus 164 ~~~s~~~~e 172 (194)
.+++.+-|.
T Consensus 267 ~~i~~~~~~ 275 (291)
T 3ois_A 267 FWMPYEYIS 275 (291)
T ss_dssp EEEEHHHHT
T ss_pred EEEEHHHhc
Confidence 777766653
No 18
>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} SCOP: d.3.1.1 PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A
Probab=89.77 E-value=0.57 Score=37.99 Aligned_cols=60 Identities=7% Similarity=0.142 Sum_probs=35.9
Q ss_pred ccHHHHHHHHHcCCcEEEEEEcCCC--ccccccccccccCccCCCCCCcceEEEEEEeeCCCce--EEEeC
Q 029371 90 ISGVEISLMILSGNYIAIALVDQYK--LSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDE--FEIRD 156 (194)
Q Consensus 90 vs~~eI~~~L~~G~~~~IvLvd~~~--L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~~--~~~~D 156 (194)
.+.++|++.|.+| |+.|-+|+.. +. ...+.+.... + ....+|-|+|+||+.+.+. ++++|
T Consensus 119 ~~~~~l~~~l~~G--PV~v~~~~~~~~f~-~Y~~Giy~~~-~---~~~~~HaV~iVGyg~~~g~~yWivkN 182 (220)
T 3p5u_A 119 NNEWALQTAVAYQ--PVSVALEAAGYNFQ-HYSSGIFTGP-C---GTAVDHAVTIVGYGTEGGIDYWIVKN 182 (220)
T ss_dssp TCHHHHHHHHTTS--CEEEEECCCSHHHH-TCCSSEECCC-C---CCSCCEEEEEEEEEEETTEEEEEEEC
T ss_pred CcHHHHHHHHhcC--CEEEEEecCchhhc-cccCceECCC-C---CCccceEEEEEEEecCCCceEEEEEC
Confidence 4677888888555 7888888752 11 0111222111 1 2246999999999965443 56665
No 19
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E*
Probab=89.59 E-value=0.59 Score=37.97 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=37.4
Q ss_pred ccHHHHHHHHHcCCcEEEEEEcCCC--ccccccccccccCccCCCCCCcceEEEEEEeeCCCc--eEEEeCC
Q 029371 90 ISGVEISLMILSGNYIAIALVDQYK--LSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSD--EFEIRDP 157 (194)
Q Consensus 90 vs~~eI~~~L~~G~~~~IvLvd~~~--L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~--~~~~~DP 157 (194)
.+.++|++.|.+| |+.+-+|+.- +. ...+.+.... +. ...+|-|+|+||+.+.+ =++++|-
T Consensus 116 ~~~~~i~~~l~~G--PV~v~i~~~~~~f~-~Y~~Giy~~~--~~--~~~~HaV~iVGyg~~~g~~yWivkNS 180 (218)
T 1yal_A 116 NCETSFLGALANQ--PLSVLVEAGGKPFQ-LYKSGVFDGP--CG--TKLDHAVTAVGYGTSDGKNYIIIKNS 180 (218)
T ss_dssp SBHHHHHHHHTTS--CEEEEECCCSHHHH-TCCSSEECCS--CC--SCCCEEEEEEEEEEETTEEEEEEECS
T ss_pred CCHHHHHHHHHhC--CEEEEEeccchhcc-ccCCceECCC--CC--CCCCEEEEEEEeeccCCccEEEEEeC
Confidence 3677899999875 7888888741 11 0111222211 11 13699999999998653 3666663
No 20
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana}
Probab=89.19 E-value=0.85 Score=36.95 Aligned_cols=59 Identities=10% Similarity=0.126 Sum_probs=37.1
Q ss_pred ccHHHHHHHHHcCCcEEEEEEcCCC--ccccccccccccCccCCCCCCcceEEEEEEeeCCCceEEEeCC
Q 029371 90 ISGVEISLMILSGNYIAIALVDQYK--LSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDP 157 (194)
Q Consensus 90 vs~~eI~~~L~~G~~~~IvLvd~~~--L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~~~~~~DP 157 (194)
.+.++|++.|.+| |+.|-+|+.- +. .....+.... +. ...+|-|+|+||+. +=++++|-
T Consensus 116 ~~~~~i~~~l~~g--PV~v~i~~~~~~f~-~Y~~Giy~~~--~~--~~~~HaV~iVGyg~--~yWivkNS 176 (214)
T 2bdz_A 116 NDEISLIQAIANQ--PVSVVTDSRGRGFQ-FYKGGIYEGP--CG--TNTDHAVTAVGYGK--TYLLLKNS 176 (214)
T ss_dssp SBHHHHHHHHHHS--CEEEEECCCSHHHH-TCCSSEECCS--CC--SCCCEEEEEEEECS--SEEEEECS
T ss_pred CcHHHHHHHHHhC--CEEEEEeeChhHhh-cccCceecCC--CC--CCCCeEEEEEEcCC--CeEEEEeC
Confidence 4678899999875 7788888761 11 0111222111 11 24799999999998 55777764
No 21
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*
Probab=89.15 E-value=1 Score=36.28 Aligned_cols=58 Identities=12% Similarity=0.228 Sum_probs=36.4
Q ss_pred cHHHHHHHHHcCCcEEEEEEcCCC--ccccccccccccCccCCCCCCcceEEEEEEeeCCCceEEEeCC
Q 029371 91 SGVEISLMILSGNYIAIALVDQYK--LSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDP 157 (194)
Q Consensus 91 s~~eI~~~L~~G~~~~IvLvd~~~--L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~~~~~~DP 157 (194)
+.++|++.|.+| |+.|-+|+.- +. ...+.+.... +. ...+|-|+|+||+. +=++++|-
T Consensus 115 ~~~~i~~~l~~G--PV~v~i~~~~~~f~-~Y~~Gvy~~~--c~--~~~~HaV~iVGyg~--~yWivkNS 174 (208)
T 1o0e_A 115 NEXALKQAVAVQ--PSTVAIDASSAQFQ-QYSSGIFSGP--CG--TKLNHGVTIVGYQA--NYWIVRNS 174 (208)
T ss_dssp CHHHHHHHHHHS--CEEEEECCCSHHHH-TCCSSEECCC--CC--SCCCEEEEEEEECS--SEEEEECS
T ss_pred CHHHHHHHHHhC--CEEEEEEccCcccc-cccCceECCC--CC--CcCCEEEEEEEeCC--CeEEEEcC
Confidence 567788888876 7778888742 11 1111222211 11 24699999999998 56777773
No 22
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A*
Probab=88.95 E-value=0.66 Score=37.62 Aligned_cols=60 Identities=10% Similarity=0.089 Sum_probs=36.6
Q ss_pred ccHHHHHHHHHcCCcEEEEEEcCCC--ccccccccccccCccCCCCCCcceEEEEEEeeCCCc--eEEEeC
Q 029371 90 ISGVEISLMILSGNYIAIALVDQYK--LSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSD--EFEIRD 156 (194)
Q Consensus 90 vs~~eI~~~L~~G~~~~IvLvd~~~--L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~--~~~~~D 156 (194)
.+.++|++.|.+| |+.|-+|+.- +. ...+.+.... +. ...+|-|+|+||+.+.+ =++++|
T Consensus 116 ~~~~~i~~~l~~G--PV~v~~~~~~~~f~-~Y~~Giy~~~--~~--~~~~HaV~iVGyg~~~g~~ywivkN 179 (216)
T 1ppo_A 116 NNEGNLLNAIAKQ--PVSVVVESKGRPFQ-LYKGGIFEGP--CG--TKVDHAVTAVGYGKSGGKGYILIKN 179 (216)
T ss_dssp SCHHHHHHHHHHS--CEEEEECCCSHHHH-HCCSSEECCS--CC--SCCCEEEEEEEEEEETTEEEEEEEC
T ss_pred CCHHHHHHHHHhC--CEEEEEecCChhhh-hcCCceECCC--CC--CCCCEEEEEEEeeccCCccEEEEEe
Confidence 3677899999886 7788888741 11 0111222211 11 13699999999997643 366666
No 23
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor}
Probab=88.80 E-value=0.95 Score=39.47 Aligned_cols=63 Identities=10% Similarity=0.157 Sum_probs=39.4
Q ss_pred ccHHHHHHHHHcCCcEEEEEEcCCC-ccccccccccccCccCCCCCCcceEEEEEEeeCCCce--EEEeC
Q 029371 90 ISGVEISLMILSGNYIAIALVDQYK-LSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDE--FEIRD 156 (194)
Q Consensus 90 vs~~eI~~~L~~G~~~~IvLvd~~~-L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~~--~~~~D 156 (194)
-+.++|+..|.++ +|+.|-+|+.- +. ...+.+..... | +....+|-|+|+||+.+.+. ++++|
T Consensus 231 ~~e~~lk~al~~~-GPV~v~i~a~~~f~-~Y~~GVy~~~~-c-~~~~~~HaV~iVGyg~~~g~~yWivkN 296 (329)
T 3qt4_A 231 GDENSLADAVGQA-GPVAVAIDATDELQ-FYSGGLFYDQT-C-NQSDLNHGVLVVGYGSDNGQDYWILKN 296 (329)
T ss_dssp TCHHHHHHHHHHT-CCEEEEECCCGGGT-TEEEEEECCSS-C-CSSCCCEEEEEEEEEEETTEEEEEEEC
T ss_pred CCHHHHHHHHHhC-CCEEEEEecChhhh-hccCceeecCC-C-CCCcCCEEEEEEEEEeeCCccEEEEEe
Confidence 4688999999986 48999999873 10 01111221111 1 12457899999999976433 66666
No 24
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1
Probab=88.75 E-value=0.87 Score=37.26 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=36.5
Q ss_pred cHHHHHHHHHcCCcEEEEEEcCCC--ccccccccccccCccCCCCCCcceEEEEEEeeCCC---ceEEEeCC
Q 029371 91 SGVEISLMILSGNYIAIALVDQYK--LSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANS---DEFEIRDP 157 (194)
Q Consensus 91 s~~eI~~~L~~G~~~~IvLvd~~~--L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~---~~~~~~DP 157 (194)
+.+.|++.|.+| |+.|-+++.. +. ...+.+.... +. ...+|-|+|+||+.+. +=++++|-
T Consensus 120 ~~~~i~~~l~~G--PV~v~i~~~~~~f~-~Y~~Giy~~~--c~--~~~~HaV~iVGyg~~~~g~~yWivkNS 184 (229)
T 1s4v_A 120 DENALLKAVANQ--PVSVAIDAGGSDFQ-FYSEGVFTGS--CG--TELDHGVAIVGYGTTIDGTKYWTVKNS 184 (229)
T ss_dssp CHHHHHHHHHHS--CEEEEECCCSHHHH-TCCSSEECCC--CC--CCCCEEEEEEEEEECTTSCEEEEEECS
T ss_pred cHHHHHHHHhcC--CEEEEEEeCcHHHh-hCCCcEECCC--CC--CCCCeEEEEEEeccccCCCCEEEEEeC
Confidence 567888888886 7888888731 11 0111222211 11 2369999999999864 34666663
No 25
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1
Probab=88.57 E-value=0.52 Score=38.11 Aligned_cols=63 Identities=13% Similarity=0.251 Sum_probs=37.4
Q ss_pred cHHHHHHHHHcCCcEEEEEEcCCCcccccccccccc-CccCCCCCCcceEEEEEEeeCCCc--eEEEeC
Q 029371 91 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVP-GFYGSDSGYTGHYILICGYDANSD--EFEIRD 156 (194)
Q Consensus 91 s~~eI~~~L~~G~~~~IvLvd~~~L~~~~~~~~~~~-~~~~~~~~Y~GHYVVLcGYd~~~~--~~~~~D 156 (194)
+.++|++.|.++ +|+.|-+|+.-+.- ..+.+... ...+ .....+|-|+|+||+.+.+ =++++|
T Consensus 116 ~~~~ik~~l~~~-GPV~v~i~~~~f~~-Y~~Giy~~~~~~c-~~~~~~HaV~iVGyg~~~g~~yWivkN 181 (214)
T 1m6d_A 116 NEQKLAAWLAKR-GPISVAINAFGMQF-YRHGISRPLRPLC-SPWLIDHAVLLVGYGQRSDVPFWAIKN 181 (214)
T ss_dssp CHHHHHHHHHHH-CCEEEEECTHHHHH-CCSSEECCCGGGS-CTTCCCEEEEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHhC-CCEEEEEEechhhh-cCCceecCCCCcC-CCCcCCEEEEEEEEeecCCcEEEEEEe
Confidence 678899998765 37888888752110 11122111 1111 1235799999999998654 356666
No 26
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ...
Probab=88.53 E-value=1.2 Score=35.87 Aligned_cols=58 Identities=10% Similarity=0.157 Sum_probs=36.4
Q ss_pred cHHHHHHHHHcCCcEEEEEEcCCC--ccccccccccccCccCCCCCCcceEEEEEEeeCCCceEEEeCC
Q 029371 91 SGVEISLMILSGNYIAIALVDQYK--LSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDP 157 (194)
Q Consensus 91 s~~eI~~~L~~G~~~~IvLvd~~~--L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~~~~~~DP 157 (194)
+.++|++.|.+| |+.|-+|+.- +. ...+.+.... +. ...+|-|+|+||+. +=++++|-
T Consensus 117 ~~~~i~~~l~~G--PV~v~i~~~~~~f~-~Y~~Gvy~~~--~~--~~~~HaV~iVGyg~--~yWivkNS 176 (212)
T 2cio_A 117 NEGALLYSIANQ--PVSVVLEAAGKDFQ-LYRGGIFVGP--CG--NKVDHAVAAVGYGP--NYILIKNS 176 (212)
T ss_dssp CHHHHHHHHHHS--CEEEEECCCSHHHH-TCCSSEECCC--CC--SCCCEEEEEEEEET--TEEEEECS
T ss_pred cHHHHHHHHHhC--CEEEEEeccCcchh-hcCCceecCC--CC--CCCCEEEEEEEecC--CeEEEEeC
Confidence 567889988876 7788888742 11 1111222211 11 24699999999998 55777764
No 27
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0
Probab=88.33 E-value=0.68 Score=37.44 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=37.2
Q ss_pred ccHHHHHHHHHcCCcEEEEEEcCCC--ccccccccccccCccCCCCCCcceEEEEEEeeCC--Cc--eEEEeC
Q 029371 90 ISGVEISLMILSGNYIAIALVDQYK--LSHSWMEDVIVPGFYGSDSGYTGHYILICGYDAN--SD--EFEIRD 156 (194)
Q Consensus 90 vs~~eI~~~L~~G~~~~IvLvd~~~--L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~--~~--~~~~~D 156 (194)
.+.++|++.|..| |+.+-+|+.. +.- ....+..+.+ ....+|-|+|+||+.+ .+ -++++|
T Consensus 124 ~~~~~l~~~l~~g--PV~v~i~~~~~~f~~-y~~Giy~~~~----~~~~~Hav~iVGyg~~~~~g~~ywivkN 189 (224)
T 3f75_A 124 RSEAAMKAALAKS--PVSIAIEADQMPFQF-YHEGVFDASC----GTDLDHGVLLVGYGTDKESKKDFWIMKN 189 (224)
T ss_dssp SCHHHHHHHHHHS--CEEEEECCCSHHHHT-EEEEEECCCC----CCCCCEEEEEEEEEEETTTTEEEEEEEC
T ss_pred ChHHHHHHHHcCC--CEEEEEeccchhhhc-CccceECCCC----CCccCeEEEEEEEecccCCCCCEEEEEC
Confidence 4678899998844 7888888762 111 1112222221 2467999999999975 33 366666
No 28
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0
Probab=88.25 E-value=0.87 Score=39.67 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=38.6
Q ss_pred ccHHHHHHHHHcCCcEEEEEEcCCCccccccccccccCccCCCCCCcceEEEEEEeeCCCce--EEEeC
Q 029371 90 ISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDE--FEIRD 156 (194)
Q Consensus 90 vs~~eI~~~L~~G~~~~IvLvd~~~L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~~--~~~~D 156 (194)
-+.++|+..|.++ +|+.|-+|+.--.-.....+..... | .....+|-|+|+||+.+.+. ++++|
T Consensus 233 ~~e~~lk~al~~~-GPV~v~i~a~~~f~~Y~~Gvy~~~~-c-~~~~~~HaV~iVGyg~~~g~~yWivkN 298 (331)
T 3qj3_A 233 PDENMLADMVATK-GPVAVAFDADDPFGSYSGGVYYNPT-C-ETNKFTHAVLIVGYGNENGQDYWLVKN 298 (331)
T ss_dssp CCHHHHHHHHHHH-CCEEEEECCCTTGGGEEEEEECCTT-C-CSSCCCEEEEEEEEEEETTEEEEEEEC
T ss_pred CCHHHHHHHHHhC-CCEEEEEEcccccccccCceEeCCC-C-CCCcCCEEEEEEEEeccCCceEEEEEc
Confidence 3678999999885 3888888886310011111111111 1 12457899999999976443 56666
No 29
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1
Probab=87.61 E-value=0.92 Score=39.23 Aligned_cols=64 Identities=11% Similarity=0.130 Sum_probs=38.5
Q ss_pred ccHHHHHHHHHc-CCcEEEEEEcCCC---ccccccccccccCccCCCCCCcceEEEEEEeeCCCce--EEEeCC
Q 029371 90 ISGVEISLMILS-GNYIAIALVDQYK---LSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDE--FEIRDP 157 (194)
Q Consensus 90 vs~~eI~~~L~~-G~~~~IvLvd~~~---L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~~--~~~~DP 157 (194)
-+.++|++.|.+ + +|+.|-+|+.- +. .+.+.+.... .|..... +|-|+|+||+.+.+. .+++|-
T Consensus 202 ~~~~~ik~al~~~~-GPV~v~i~~~~~~~f~-~Y~~GVy~~~-~c~~~~~-~HaV~iVGyg~~~g~~yWivkNS 271 (312)
T 1xkg_A 202 PNANKIREALAQTH-SAIAVIIGIKDLDAFR-HYDGRTIIQR-DNGYQPN-YHAVNIVGYSNAQGVDYWIVRNS 271 (312)
T ss_dssp CCHHHHHHHHHHHC-CCEEEEEEESCHHHHH-TCCSSSCBCC-CCSSCCE-EEEEEEEEEEEETTEEEEEEECS
T ss_pred CCHHHHHHHHHhcC-CCEEEEEEeccccccc-ccCCcEEcCC-CCCCCcC-ceEEEEEEEeccCCceEEEEEeC
Confidence 367899999998 5 48888888762 11 1111222111 1221224 999999999976543 566663
No 30
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A*
Probab=87.17 E-value=1.8 Score=35.78 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=35.6
Q ss_pred cHHHHHHHHHc----CCcEEEEEEcCCCccccccccccccCccCCCCCC-cceEEEEEEeeCCCc--eEEEeC
Q 029371 91 SGVEISLMILS----GNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGY-TGHYILICGYDANSD--EFEIRD 156 (194)
Q Consensus 91 s~~eI~~~L~~----G~~~~IvLvd~~~L~~~~~~~~~~~~~~~~~~~Y-~GHYVVLcGYd~~~~--~~~~~D 156 (194)
+.++|++.|.+ | |+.|-+++.-+. ...+.+..... +. ..+ .+|-|+|+||+.+.+ =++++|
T Consensus 121 ~~~~ik~~l~~~~~~G--PV~v~i~~~~f~-~Y~~Giy~~~~-c~-~~~~~~HaV~iVGyg~~~g~~yWivkN 188 (246)
T 2b1m_A 121 TESEAESSLQSFVLEQ--PISVSIDAKDFH-FYSGGIYDGGN-CS-SPYGINHFVLIVGYGSEDGVDYWIAKN 188 (246)
T ss_dssp CHHHHHHHHHHHHHHS--CEEEEECCTTGG-GCCSSEECCTT-CC-SSCCCCEEEEEEEEEEETTEEEEEEEC
T ss_pred hHHHHHHHHHhhccCC--CEEEEEEcchhh-cccceeecCCC-CC-CCCcCceEEEEEEEeccCCceEEEEEe
Confidence 56788888887 6 778888872111 11112221111 11 223 799999999997543 255665
No 31
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1
Probab=87.03 E-value=1.4 Score=35.49 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=32.9
Q ss_pred cHHHHHHHHHcCCcEEEEEEcCCC--ccccccccccccCccCCCCCCcceEEEEEEeeCCCceEEEeC
Q 029371 91 SGVEISLMILSGNYIAIALVDQYK--LSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRD 156 (194)
Q Consensus 91 s~~eI~~~L~~G~~~~IvLvd~~~--L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~~~~~~D 156 (194)
..+.+++.+.+| |+.+-+|+.- +. .....+... . + ....+|-|+|+||+. +-++++|
T Consensus 117 ~~~~~~~~~~~G--PV~v~i~~~~~~f~-~y~~Giy~~-~-~--~~~~~HaV~iVGyg~--~yWivkN 175 (213)
T 3ioq_A 117 NEQALIQRIAIQ--PVSIVVEAKGRAFQ-NYRGGIFAG-P-C--GTSIDHAVAAVGYGN--DYILIKN 175 (213)
T ss_dssp CHHHHHHHHTTS--CEEEEECCCSHHHH-TCCSSEECC-S-C--CSCCCEEEEEEEEET--TEEEEEC
T ss_pred hHHHHHHHHHhC--CEEEEEEechhhhh-hccCCeEcC-C-C--CCccCceEEEEecCC--CeEEEEC
Confidence 344455656555 8888888851 11 111122211 1 1 235699999999997 4566666
No 32
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens}
Probab=86.77 E-value=0.96 Score=39.04 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=38.1
Q ss_pred ccHHHHHHHHHcCCcEEEEEEcCCC--ccccccccccccCccCCCCCCcceEEEEEEeeCCCc--eEEEeC
Q 029371 90 ISGVEISLMILSGNYIAIALVDQYK--LSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSD--EFEIRD 156 (194)
Q Consensus 90 vs~~eI~~~L~~G~~~~IvLvd~~~--L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~--~~~~~D 156 (194)
-+.++|+..|.+. +|+.|-+|+.- +. ...+.+.... .|.. ..+|-|+|+||+.+.+ =.+++|
T Consensus 217 ~~~~~i~~al~~~-GPV~v~i~~~~~~f~-~Y~~Gvy~~~-~c~~--~~~HaV~iVGyg~~~g~~yWivkN 282 (315)
T 2c0y_A 217 GREDVLKEAVANK-GPVSVGVDARHPSFF-LYRSGVYYEP-SCTQ--NVNHGVLVVGYGDLNGKEYWLVKN 282 (315)
T ss_dssp TCHHHHHHHHHHT-CCEEEEECCCSHHHH-TEEEEEECCT-TCCS--CCCEEEEEEEEEEETTEEEEEEEC
T ss_pred CCHHHHHHHHHHc-CCEEEEEecCchhhh-ccCCCcccCC-CCCC--cCCEEEEEEEEeecCCCcEEEEEc
Confidence 3678899999885 38888998861 11 0111222111 1212 6799999999997543 356666
No 33
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ...
Probab=85.92 E-value=0.89 Score=37.99 Aligned_cols=62 Identities=19% Similarity=0.176 Sum_probs=36.7
Q ss_pred ccHHHHHHHHHcCCcEEEEEEcCC--CccccccccccccCccCCCCCCcceEEEEEEeeCCCce--EEEeCC
Q 029371 90 ISGVEISLMILSGNYIAIALVDQY--KLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDE--FEIRDP 157 (194)
Q Consensus 90 vs~~eI~~~L~~G~~~~IvLvd~~--~L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~~--~~~~DP 157 (194)
.+.++|++.|.+. +|+.|-+++. +.. ..+.+.... .+ ....+|-|+|+||+.+.+. ++++|-
T Consensus 161 ~~~~~i~~~i~~~-GPV~v~i~~~~~f~~--Y~~Gvy~~~-~~--~~~~~HaV~iVGyg~~~g~~yWivkNS 226 (266)
T 3cbj_A 161 NSEKDIMAEIYKN-GPVEGAFSVYSDFLL--YKSGVYQHV-TG--EMMGGHAIRILGWGVENGTPYWLVANS 226 (266)
T ss_dssp SCHHHHHHHHHHH-CCEEEEEEEEGGGGG--CCSSEECCC-SS--CEEEEEEEEEEEEEEETTEEEEEEECS
T ss_pred CCHHHHHHHHHhc-CCEEEEEEeccchhh--cCCeEEecC-CC--CccCCeEEEEEEecccCCceEEEEEcC
Confidence 4788899999874 2778888764 111 111222111 11 1234899999999976443 566663
No 34
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=85.89 E-value=3.1 Score=31.57 Aligned_cols=65 Identities=15% Similarity=0.296 Sum_probs=39.5
Q ss_pred HHHHHHHcCCcEEEEEEcCCCcc-cccc---ccccc--------c---CccCCCCCCcceEEEEEEeeCCCc----eEEE
Q 029371 94 EISLMILSGNYIAIALVDQYKLS-HSWM---EDVIV--------P---GFYGSDSGYTGHYILICGYDANSD----EFEI 154 (194)
Q Consensus 94 eI~~~L~~G~~~~IvLvd~~~L~-~~~~---~~~~~--------~---~~~~~~~~Y~GHYVVLcGYd~~~~----~~~~ 154 (194)
+|..+|++|=.|.|=..|.+.-. .+|. -+.+. . .| ...|.||||=|+|||...+ +|++
T Consensus 27 QV~yll~qGw~~~lE~~d~~~~~~~yW~mWklPmf~~~d~~~Vl~Ele~C---~k~~p~~yVRliGfD~~~q~q~~sfIv 103 (118)
T 3zxw_B 27 QIQYAIDQGYHPCVEFNETSNAEIRYWTMWKLPLFNCTNAQDVLNEVQQC---RSEYPNCFIRVVAFDNIKQCQVMSFIV 103 (118)
T ss_dssp HHHHHHHHTCEEEEEEESCCCTTCCCCEEESSCCTTCCCHHHHHHHHHHH---HHHCTTSEEEEEEEETTTTEEEEEEEE
T ss_pred HHHHHHhCCCeeEEEeccCCCcccCEEeecccCCcCCCCHHHHHHHHHHH---HHHCCCceEEEEEEeCCcCEEEEEEEE
Confidence 44556788977777777766442 2331 11111 0 11 1349999999999999987 5888
Q ss_pred eCCCCCC
Q 029371 155 RDPASCR 161 (194)
Q Consensus 155 ~DPa~~~ 161 (194)
.-|+.++
T Consensus 104 ~RP~~~~ 110 (118)
T 3zxw_B 104 YKPNQAN 110 (118)
T ss_dssp ECC----
T ss_pred ECCCCCC
Confidence 8887654
No 35
>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*
Probab=85.59 E-value=1.8 Score=34.96 Aligned_cols=64 Identities=11% Similarity=0.072 Sum_probs=37.8
Q ss_pred cccHHHHHHHHHc-CCcEEEEEEcCC----CccccccccccccCccCCCCCCcceEEEEEEeeCCCc--eEEEeCC
Q 029371 89 SISGVEISLMILS-GNYIAIALVDQY----KLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSD--EFEIRDP 157 (194)
Q Consensus 89 svs~~eI~~~L~~-G~~~~IvLvd~~----~L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~--~~~~~DP 157 (194)
..+.++|++.|.+ + +|+.|.++.. +..- ........ .......+|-|+|+||+.+.+ -++++|-
T Consensus 121 ~~~~~~ik~~l~~~~-gpV~v~~~~~~~~~f~~Y--~~gi~~~~--~~~~~~~~HaV~iVGyg~~~g~~ywivkNS 191 (222)
T 3f5v_A 121 PPNANKIREALAQTH-SAIAVIIGIKDLDAFRHY--DGRTIIQR--DNGYQPNYHAVNIVGYSNAQGVDYWIVRNS 191 (222)
T ss_dssp SCCHHHHHHHHHHHC-CCEEEEEEESCHHHHHTC--CSSSCBCC--CCSSSCEEEEEEEEEEEEETTEEEEEEECS
T ss_pred CCCHHHHHHHHHhcC-CCEEEEEEeccchhhhcc--CCCceecC--CCCCCccCcEEEEEEEeccCCCEEEEEEcC
Confidence 3467889999998 5 4777777652 1111 01111111 011346799999999997643 3666663
No 36
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A
Probab=85.51 E-value=1 Score=38.82 Aligned_cols=64 Identities=13% Similarity=0.128 Sum_probs=38.5
Q ss_pred ccHHHHHHHHHcCCcEEEEEEcCCC--ccccccccccccCccCCCCCCcceEEEEEEeeCCCc--eEEEeCC
Q 029371 90 ISGVEISLMILSGNYIAIALVDQYK--LSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSD--EFEIRDP 157 (194)
Q Consensus 90 vs~~eI~~~L~~G~~~~IvLvd~~~--L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~--~~~~~DP 157 (194)
-+.++|++.|.+. +|+.|-+|+.- +.- ..+.+..... |. ....+|-|+|+||+.+.+ =++++|-
T Consensus 215 ~~~~~i~~al~~~-GPV~v~i~~~~~~f~~-Y~~Gvy~~~~-c~-~~~~~HaV~iVGyg~~~g~~yWivkNS 282 (314)
T 1by8_A 215 GNEKALKRAVARV-GPVSVAIDASLTSFQF-YSKGVYYDES-CN-SDNLNHAVLAVGYGIQKGNKHWIIKNS 282 (314)
T ss_dssp SCHHHHHHHHHHH-CCEEEEECCCSHHHHT-EEEECBCCTT-CC-SSCCCEEEEEEEEEEETTEEEEEEECS
T ss_pred CCHHHHHHHHHHc-CCEEEEEEeChHHhhh-ccCceecCCC-CC-CCCCCeEEEEEEEeccCCceEEEEEcC
Confidence 3678899999874 38888888861 110 1112221111 11 235799999999996543 3666663
No 37
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare}
Probab=85.11 E-value=1.7 Score=36.52 Aligned_cols=60 Identities=12% Similarity=0.165 Sum_probs=36.1
Q ss_pred ccHHHHHHHHHcCCcEEEEEEcCCC--ccccccccccccCccCCCCCCcceEEEEEEeeCCC---ceEEEeC
Q 029371 90 ISGVEISLMILSGNYIAIALVDQYK--LSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANS---DEFEIRD 156 (194)
Q Consensus 90 vs~~eI~~~L~~G~~~~IvLvd~~~--L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~---~~~~~~D 156 (194)
.+.++|++.|.+| |+.|-+|+.- +. ...+.+.... +. ...+|-|+|+||+.+. +=++++|
T Consensus 124 ~~e~~ik~al~~G--PV~v~i~~~~~~f~-~Y~sGVy~~~--c~--~~~~HaV~IVGyg~~~~G~~YWivkN 188 (262)
T 2fo5_A 124 NSEEDLARAVANQ--PVSVAVEASGKAFM-FYSEGVFTGE--CG--TELDHGVAVVGYGVAEDGKAYWTVKN 188 (262)
T ss_dssp TCHHHHHHHHHHS--CEEEEECCCSHHHH-TCCSSEECCC--CC--CCCCEEEEEEEEEECTTSCEEEEEEC
T ss_pred chHHHHHHHHHhC--CEEEEEecChHHHh-ccCCceECCC--CC--CcCCEEEEEEEEcccCCCceEEEEEe
Confidence 3567899999886 7888888751 11 1111222221 11 2369999999999762 3355555
No 38
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica}
Probab=83.62 E-value=1.4 Score=37.93 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=38.5
Q ss_pred ccHHHHHHHHHcCCcEEEEEEcCCCccccc---cccccccCccCCCCCCcceEEEEEEeeCCCc--eEEEeC
Q 029371 90 ISGVEISLMILSGNYIAIALVDQYKLSHSW---MEDVIVPGFYGSDSGYTGHYILICGYDANSD--EFEIRD 156 (194)
Q Consensus 90 vs~~eI~~~L~~G~~~~IvLvd~~~L~~~~---~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~--~~~~~D 156 (194)
-+.++|+..|.++ +|+.|-+|+.- ++ .+.+.....+. ....+|-|+|+||+.+.+ =.+++|
T Consensus 208 ~~~~~i~~~l~~~-GPV~v~i~~~~---~f~~Y~~Gvy~~~~c~--~~~~~HaV~iVGyg~~~g~~yWivkN 273 (310)
T 2o6x_A 208 GSEVELKNLVGAE-GPAAVAVDVES---DFMMYRSGIYQSQTCS--PLRVNHAVLAVGYGTQGGTDYWIVKN 273 (310)
T ss_dssp CCHHHHHHHHHHH-CCEEEEECCCH---HHHTEEEEEECCSSCC--TTCCCEEEEEEEEEEETTEEEEEEEC
T ss_pred CCHHHHHHHHHhc-CCeEEEEecch---hhhhCCCceecCCCCC--CCCCCEEEEEEEEeccCCceEEEEEe
Confidence 3678899999875 38888888862 22 11222211111 235799999999997643 356666
No 39
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A
Probab=83.40 E-value=1.4 Score=36.32 Aligned_cols=52 Identities=13% Similarity=0.068 Sum_probs=30.7
Q ss_pred ccHHHHHHHHHcCCcEEEEEEcCCCccccccccccccCccCCCCCCcceEEEEEEeeCCC
Q 029371 90 ISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANS 149 (194)
Q Consensus 90 vs~~eI~~~L~~G~~~~IvLvd~~~L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~ 149 (194)
.+.++|++.| | |+.|-+++.--.-...+.+... . +.. . .+|-|+|+||+.+.
T Consensus 134 ~~~~~ik~~l--G--PV~v~i~~~~~f~~Y~~Giy~~-~-c~~-~-~~HaV~iVGyg~~~ 185 (241)
T 2oul_A 134 NKLKEALRFL--G--PISISVAVSDDFAFYKEGIFDG-E-CGD-Q-LNHAVMLVGFGMKE 185 (241)
T ss_dssp TCHHHHHHHT--C--CEEEEECBCHHHHTCCSSBCCS-C-BCS-S-CCEEEEEEEEEEEE
T ss_pred CCHHHHHHhh--C--CEEEEEecCcchhhcCCcEEcC-c-CCC-C-CCEEEEEEEecccc
Confidence 3577899988 6 7778888751000111122222 1 111 2 79999999999763
No 40
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A
Probab=83.38 E-value=1.7 Score=36.75 Aligned_cols=63 Identities=10% Similarity=0.132 Sum_probs=36.7
Q ss_pred cHHHHHHHHHcCCcEEEEEEcCCCccccccccccccCccCCCCCCcceEEEEEEeeCCCc--eEEEeCC
Q 029371 91 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSD--EFEIRDP 157 (194)
Q Consensus 91 s~~eI~~~L~~G~~~~IvLvd~~~L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~--~~~~~DP 157 (194)
+.++|+..|.+. +|+.|-+++.--.-...+.+..... .....+|-|+|+||+.+.+ =++++|-
T Consensus 172 ~~~~i~~~i~~~-GPV~v~i~~~~~f~~Y~~GIy~~~~---~~~~~~HaV~iVGyg~~~g~~YWivkNS 236 (277)
T 1deu_A 172 GREKMMAEIYAN-GPISCGIMATERLANYTGGIYAEYQ---DTTYINHVVSVAGWGISDGTEYWIVRNS 236 (277)
T ss_dssp SHHHHHHHHHHH-CCEEEEECCCHHHHTCCSSEECBCC---SCCCCCEEEEEEEEEEETTEEEEEEECS
T ss_pred CHHHHHHHHHHc-CCEEEEEecccccccCcCcEECCCC---CCCcCCeEEEEEEecccCCccEEEEEeC
Confidence 467888888764 3788888875100001111211111 1236799999999987543 3666663
No 41
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A*
Probab=83.14 E-value=1.5 Score=36.23 Aligned_cols=52 Identities=10% Similarity=0.005 Sum_probs=30.8
Q ss_pred ccHHHHHHHHHcCCcEEEEEEcCCCccccccccccccCccCCCCCCcceEEEEEEeeCCC
Q 029371 90 ISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANS 149 (194)
Q Consensus 90 vs~~eI~~~L~~G~~~~IvLvd~~~L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~ 149 (194)
.+.++|++.| | |+.|-+++.--.-...+.+... .+.+ . .+|-|+|+||+.+.
T Consensus 136 ~~~~~ik~~l--G--PV~v~i~~~~~f~~Y~~Giy~~--~c~~-~-~~HaV~iVGyg~~~ 187 (243)
T 3bwk_A 136 DKFKEALRYL--G--PISISIAASDDFAFYRGGFYDG--ECGA-A-PNHAVILVGYGMKD 187 (243)
T ss_dssp TCHHHHHHHT--C--CEEEEECCCHHHHTCCSSSCCC--CCCS-S-CCEEEEEEEEEEEE
T ss_pred CCHHHHHHhh--C--CEEEEEecChhHHhcCCceecC--CCCC-c-CCeEEEEEEecCcc
Confidence 3677899988 5 7788888751000111122222 1222 2 79999999999763
No 42
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1
Probab=82.66 E-value=1.8 Score=37.50 Aligned_cols=59 Identities=10% Similarity=0.114 Sum_probs=35.9
Q ss_pred cHHHHHHHHHcCCcEEEEEEcCCC--ccccccccccccCccCCCCCCcceEEEEEEeeCCCc--eEEEeC
Q 029371 91 SGVEISLMILSGNYIAIALVDQYK--LSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSD--EFEIRD 156 (194)
Q Consensus 91 s~~eI~~~L~~G~~~~IvLvd~~~--L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~--~~~~~D 156 (194)
+.++|++.|.+| |+.|-+|+.- +. ...+.+.... ++ . ..+|-|+|+||+.+.+ =++++|
T Consensus 223 ~e~~l~~~l~~G--PV~v~i~~~~~~f~-~Y~~Gvy~~~-c~-~--~~~HaV~iVGyg~~~g~~yWivkN 285 (322)
T 1pci_A 223 NEGNLLNAIAKQ--PVSVVVESKGRPFQ-LYKGGIFEGP-CG-T--KVDGAVTAVGYGKSGGKGYILIKN 285 (322)
T ss_dssp BHHHHHHHHHHS--CEEEEECTTCHHHH-TEEEEEECCS-CC-S--CCCEEEEEEEEEEETTEEEEEEEC
T ss_pred cHHHHHHHHHHC--CEEEEEeccccccc-ccCCeEeCCC-CC-C--CCCEEEEEEEEeccCCccEEEEEe
Confidence 567889988886 7888888751 10 0111222221 12 1 3699999999997643 355555
No 43
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A*
Probab=81.75 E-value=2.2 Score=36.71 Aligned_cols=62 Identities=13% Similarity=0.151 Sum_probs=37.1
Q ss_pred cHHHHHHHHHcCCcEEEEEEcCCC--ccccccccccccCccCCCCCCcceEEEEEEee---CC-Cc--eEEEeC
Q 029371 91 SGVEISLMILSGNYIAIALVDQYK--LSHSWMEDVIVPGFYGSDSGYTGHYILICGYD---AN-SD--EFEIRD 156 (194)
Q Consensus 91 s~~eI~~~L~~G~~~~IvLvd~~~--L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd---~~-~~--~~~~~D 156 (194)
+.++|+..|.+. +|+.|-+|+.- +.- ....+..... |. ....+|-|+|+||+ .+ .+ =.+++|
T Consensus 214 ~~~~ik~~l~~~-GPV~v~i~~~~~~f~~-Y~~Gvy~~~~-c~-~~~~~HaV~iVGygd~~~~~~g~~yWivkN 283 (316)
T 1cs8_A 214 QEKALMKAVATV-GPISVAIDAGHESFLF-YKEGIYFEPD-CS-SEDMDHGVLVVGYGFESTESDNNKYWLVKN 283 (316)
T ss_dssp CHHHHHHHHHHH-CCEEEEECCCSHHHHT-EEEEEECCTT-CC-SSCCCEEEEEEEEEEECCSSCCEEEEEEEC
T ss_pred CHHHHHHHHHhc-CCEEEEEecCChhhcc-ccCceECCCC-CC-CCCCCEEEEEEEecCCcccCCCCcEEEEEc
Confidence 688899999884 38888888762 110 1112221111 11 23579999999999 54 23 355666
No 44
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=81.52 E-value=6.9 Score=29.22 Aligned_cols=63 Identities=22% Similarity=0.374 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCcEEEEEEcCCCcc-cccc---cccccc-----------CccCCCCCCcceEEEEEEeeCCCc----eEE
Q 029371 93 VEISLMILSGNYIAIALVDQYKLS-HSWM---EDVIVP-----------GFYGSDSGYTGHYILICGYDANSD----EFE 153 (194)
Q Consensus 93 ~eI~~~L~~G~~~~IvLvd~~~L~-~~~~---~~~~~~-----------~~~~~~~~Y~GHYVVLcGYd~~~~----~~~ 153 (194)
++|...|++|=.|.|=..|.+.-. .+|. -+.+.. .|. ..|.||||=|+|||...+ +|+
T Consensus 27 kQI~Yll~qGw~p~lEf~d~~~~~~~yW~mwklPmf~~~d~~~Vl~Ele~C~---k~~p~~yVRligfD~~~q~q~~sfI 103 (109)
T 1rbl_M 27 AQIEYMIEQGFHPLIEFNEHSNPEEFYWTMWKLPLFACAAPQQVLDEVRECR---SEYGDCYIRVAGFDNIKECQTSSFI 103 (109)
T ss_dssp HHHHHHHHHTCEEEEEEESCCCTTCCCCEECSSCCTTCCCHHHHHHHHHHHH---HHCTTSEEEEEEEETTTTEEEEEEE
T ss_pred HHHHHHHHCCCEEEEEeccCccccccEEeecccCCcCCCCHHHHHHHHHHHH---HHCCCCeEEEEEEeCCCcEEEEEEE
Confidence 345556778877777778766542 2331 111110 111 249999999999999887 366
Q ss_pred EeCCC
Q 029371 154 IRDPA 158 (194)
Q Consensus 154 ~~DPa 158 (194)
+.-|+
T Consensus 104 v~RP~ 108 (109)
T 1rbl_M 104 VHRPG 108 (109)
T ss_dssp EECCC
T ss_pred eeCCC
Confidence 66664
No 45
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A*
Probab=79.66 E-value=1.6 Score=37.91 Aligned_cols=60 Identities=13% Similarity=0.187 Sum_probs=35.4
Q ss_pred ccHHHHHHHHHcCCcEEEEEEcCCCcccccc---ccccccCccCCCCCCcceEEEEEEeeCCCce--EEEeC
Q 029371 90 ISGVEISLMILSGNYIAIALVDQYKLSHSWM---EDVIVPGFYGSDSGYTGHYILICGYDANSDE--FEIRD 156 (194)
Q Consensus 90 vs~~eI~~~L~~G~~~~IvLvd~~~L~~~~~---~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~~--~~~~D 156 (194)
.+.++|++.|.+. +|+.|-+|+. -+++ +.+... ..+ ..-.+|-|+|+||+.+.+. .+++|
T Consensus 216 ~~~~~i~~~i~~~-GPV~v~i~~~---~~f~~Y~~GVy~~-~~~--~~~~~HaV~iVGyG~~~g~~YWivkN 280 (325)
T 3hhi_A 216 QGEDDYMRELFFR-GPFEVAFDVY---EDFIAYNSGVYHH-VSG--QYLGGHAVRLVGWGTSNGVPYWKIAN 280 (325)
T ss_dssp CSHHHHHHHHHHH-CCEEEEEEEE---HHHHTCCSSEECC-CSC--CEEEEEEEEEEEEEEETTEEEEEEEC
T ss_pred CCHHHHHHHHHHC-CCEEEEEEec---cccccccCceecC-CCC--CCCCCEEEEEEEEEecCCceEEEEEe
Confidence 4678899998764 3788888874 1111 111111 111 1123899999999865543 55555
No 46
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=79.41 E-value=9.8 Score=29.58 Aligned_cols=66 Identities=17% Similarity=0.288 Sum_probs=42.6
Q ss_pred HHHHHHHHcCCcEEEEEEcCCCc-ccccc---cccccc-----------CccCCCCCCcceEEEEEEeeCCCc------e
Q 029371 93 VEISLMILSGNYIAIALVDQYKL-SHSWM---EDVIVP-----------GFYGSDSGYTGHYILICGYDANSD------E 151 (194)
Q Consensus 93 ~eI~~~L~~G~~~~IvLvd~~~L-~~~~~---~~~~~~-----------~~~~~~~~Y~GHYVVLcGYd~~~~------~ 151 (194)
++|...|++|=.|.|=..|.+-- ..+|. -+.+.. .| ...|.||||=|+|||...+ +
T Consensus 21 kQI~YlL~qGw~~~iEf~d~~~~r~~yW~mWkLPmFg~~d~~~Vl~Ele~C---~k~~p~~YVRliGfDn~~~~qs~~~s 97 (138)
T 4f0h_B 21 KQIDYMISKKLAIGIEYTNDIHPRNSFWEMWGLPLFEVTDPAPVLFEINAC---RKAKSNFYIKVVGFSSERGIESTIIS 97 (138)
T ss_dssp HHHHHHHHTTCEEEEEEESCCCTTCCCCEESSCCBCSCCSHHHHHHHHHHH---HHHTTTSEEEEEEEECCTTTCEEEEE
T ss_pred HHHHHHHhCCCEEEEEeCCCCCCcCCEEeecCCCCcCCCCHHHHHHHHHHH---HHHCCCCeEEEEEEeCCCceEEEEEE
Confidence 34556678887778878886643 22331 111110 11 1349999999999998864 7
Q ss_pred EEEeCCCCCC
Q 029371 152 FEIRDPASCR 161 (194)
Q Consensus 152 ~~~~DPa~~~ 161 (194)
|++.-|+...
T Consensus 98 fIV~RP~~ep 107 (138)
T 4f0h_B 98 FIVNRPKHEP 107 (138)
T ss_dssp EEEECCSCCC
T ss_pred EEEeCCCCCC
Confidence 8899898754
No 47
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A*
Probab=79.37 E-value=2.5 Score=34.91 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=35.9
Q ss_pred ccHHHHHHHHHcCCcEEEEEEcCC--CccccccccccccCccCCCCCCcceEEEEEEeeCCCc--eEEEeCC
Q 029371 90 ISGVEISLMILSGNYIAIALVDQY--KLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSD--EFEIRDP 157 (194)
Q Consensus 90 vs~~eI~~~L~~G~~~~IvLvd~~--~L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~--~~~~~DP 157 (194)
.+.++|++.|.++ +|+.+-+|+. +.. ..+.+.... . ...-.+|-|+|+||+.+.+ =++++|-
T Consensus 157 ~~~~~i~~~l~~~-gPv~~~~~~~~~f~~--y~~Gi~~~~-~--~~~~~~Hav~iVGyg~~~g~~ywivkNS 222 (254)
T 3qsd_A 157 NDEKAIQKEIMKY-GPVEAGFTVYEDFLN--YKSGIYKHI-T--GETLGGHAIRIIGWGVENKAPYWLIANS 222 (254)
T ss_dssp SCHHHHHHHHHHH-CCEEEEEEEEGGGGG--CCSSEECCC-S--SCEEEEEEEEEEEEEEETTEEEEEEECS
T ss_pred CcHHHHHHHHHHc-CCEEEEEEecccccc--ccCCeeccC-C--CCCCCCeEEEEEEEeecCCeeEEEEEeC
Confidence 3688899999775 3777777763 111 111111111 1 1223489999999976544 3566663
No 48
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X
Probab=78.46 E-value=3.2 Score=34.32 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCcEEEEEEcCCCcccccc-ccccccCccCCCCCCcceEEEEEEeeCC
Q 029371 92 GVEISLMILSGNYIAIALVDQYKLSHSWM-EDVIVPGFYGSDSGYTGHYILICGYDAN 148 (194)
Q Consensus 92 ~~eI~~~L~~G~~~~IvLvd~~~L~~~~~-~~~~~~~~~~~~~~Y~GHYVVLcGYd~~ 148 (194)
.++|++.|.+. +|+.|-+++.-..- +. ........ +. ....+|-|+|+||+.+
T Consensus 157 ~~~ik~~i~~~-GPV~v~i~~~~f~~-y~~~g~~~~~~-c~-~~~~~HaV~iVGyG~~ 210 (265)
T 2wbf_X 157 VKIIKTEVMNK-GSVIAYIKAENVMG-YEFSGKKVKNL-CG-DDTADHAVNIVGYGNY 210 (265)
T ss_dssp HHHHHHHHHHH-SCEEEEECGGGGCS-GGGGSSSEECC-CC-CSCCCEEEEEEEEEEE
T ss_pred HHHHHHHHHhc-CCEEEEEEcccccc-cccCCcEEcCC-CC-CCcCCEEEEEEEEeCC
Confidence 46788888764 27788888752111 10 11111111 11 2357999999999973
No 49
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=77.47 E-value=10 Score=28.32 Aligned_cols=62 Identities=19% Similarity=0.269 Sum_probs=37.4
Q ss_pred HHHHHHHHcCCcEEEEEEcCCCcc-cccc---cccccc-----------CccCCCCCCcceEEEEEEeeCCCce----EE
Q 029371 93 VEISLMILSGNYIAIALVDQYKLS-HSWM---EDVIVP-----------GFYGSDSGYTGHYILICGYDANSDE----FE 153 (194)
Q Consensus 93 ~eI~~~L~~G~~~~IvLvd~~~L~-~~~~---~~~~~~-----------~~~~~~~~Y~GHYVVLcGYd~~~~~----~~ 153 (194)
++|...|++|=.|.|=..|.+.-. .+|. -+.+.. .|. ..|.||||=|+|||...++ |+
T Consensus 29 kQV~Yll~qGw~p~iEf~d~~~~~~~yW~mwklPmf~~~d~~~Vl~El~~C~---k~~p~~yVRligfD~~~q~q~~sfI 105 (110)
T 1svd_M 29 AQIKYAIAQGWSPGIEHVEVKNSMNQYWYMWKLPFFGEQNVDNVLAEIEACR---SAYPTHQVKLVAYDNYAQSLGLAFV 105 (110)
T ss_dssp HHHHHHHHTTCEEEEEEECGGGTTCSCCEEESCCCTTCCCHHHHHHHHHHHH---HHSTTSEEEEEEEETTTTEEEEEEE
T ss_pred HHHHHHHHCCCeeEEEeccCCccCCcEEeecccCCcCCCCHHHHHHHHHHHH---HHCCCCeEEEEEEeCCCCEEEEEEE
Confidence 345566788877777777766442 2331 111100 111 2499999999999998773 55
Q ss_pred EeCC
Q 029371 154 IRDP 157 (194)
Q Consensus 154 ~~DP 157 (194)
+.-|
T Consensus 106 v~RP 109 (110)
T 1svd_M 106 VYRG 109 (110)
T ss_dssp EECC
T ss_pred eeCC
Confidence 5544
No 50
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A
Probab=77.36 E-value=2.6 Score=36.28 Aligned_cols=60 Identities=17% Similarity=0.173 Sum_probs=35.3
Q ss_pred ccHHHHHHHHHcCCcEEEEEEcCCCcccccc---ccccccCccCCCCCCcceEEEEEEeeCCCce--EEEeC
Q 029371 90 ISGVEISLMILSGNYIAIALVDQYKLSHSWM---EDVIVPGFYGSDSGYTGHYILICGYDANSDE--FEIRD 156 (194)
Q Consensus 90 vs~~eI~~~L~~G~~~~IvLvd~~~L~~~~~---~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~~--~~~~D 156 (194)
.+.++|+..|.++ +|+.|-+|+. -+++ +.+.... . ...-.+|-|+|+||+.+.+. .+++|
T Consensus 218 ~~e~~i~~~i~~~-GPV~v~i~~~---~~f~~Y~~GVy~~~-~--~~~~~~HaV~iVGyG~~~g~~YWivkN 282 (317)
T 3pbh_A 218 NSEKDIMAEIYKN-GPVEGAFSVY---SDFLLYKSGVYQHV-T--GEMMGGHAIRILGWGVENGTPYWLVAN 282 (317)
T ss_dssp SCHHHHHHHHHHH-CCEEEEEEEE---GGGGGEEEEEECCC-S--CCEEEEEEEEEEEEEEETTEEEEEEEC
T ss_pred cHHHHHHHHHHHC-CCEEEEEEec---ccccCCCCcEEccC-C--CCCCCCEEEEEEEEEEeCCeeEEEEEc
Confidence 3678899888765 3778788764 1221 1111111 1 11233899999999865443 55665
No 51
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*
Probab=74.52 E-value=7.2 Score=35.34 Aligned_cols=63 Identities=13% Similarity=0.232 Sum_probs=36.5
Q ss_pred ccHHHHHHHHHcCCcEEEEEEcCCCcccccc---ccccccCccC---CCCCCcceEEEEEEeeCC--Cc--eEEEeC
Q 029371 90 ISGVEISLMILSGNYIAIALVDQYKLSHSWM---EDVIVPGFYG---SDSGYTGHYILICGYDAN--SD--EFEIRD 156 (194)
Q Consensus 90 vs~~eI~~~L~~G~~~~IvLvd~~~L~~~~~---~~~~~~~~~~---~~~~Y~GHYVVLcGYd~~--~~--~~~~~D 156 (194)
.+.++|+..|.++ +|+.|-+|+.- +++ +.+.....+. ......+|-|+|+||+.+ .+ =.+++|
T Consensus 331 ~~e~~ik~al~~~-GPVsvai~a~~---~F~~Y~sGVy~~~~~~~~~~~~~~~~HaV~iVGyG~~~~~G~~YWIVkN 403 (441)
T 3pdf_A 331 CNEALMKLELVHH-GPMAVAFEVYD---DFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKN 403 (441)
T ss_dssp CCHHHHHHHHHHH-CCEEEEECCCG---GGGGCCSSEECCC---CCCCCCCCCCEEEEEEEEEECTTTCCEEEEEEC
T ss_pred CcHHHHHHHHHHC-CCeEEEEEecc---cccccCCceEecCCCCcccCCCCcCCeEEEEEEecccCCCCceEEEEEc
Confidence 3577898888775 38888888851 221 1221111111 111357999999999964 22 356666
No 52
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=72.27 E-value=4.1 Score=31.32 Aligned_cols=65 Identities=15% Similarity=0.298 Sum_probs=41.3
Q ss_pred HHHHHHHHcCCcEEEEEEcCCCc--c----------cccc---ccccc--------c---CccCCCCCCcceEEEEEEee
Q 029371 93 VEISLMILSGNYIAIALVDQYKL--S----------HSWM---EDVIV--------P---GFYGSDSGYTGHYILICGYD 146 (194)
Q Consensus 93 ~eI~~~L~~G~~~~IvLvd~~~L--~----------~~~~---~~~~~--------~---~~~~~~~~Y~GHYVVLcGYd 146 (194)
++|..+|++|=.|.|=..|.+.- . .+|. -+.+. . .| ...|.+|||=|+|||
T Consensus 28 kQI~Yll~qGw~p~lEf~d~~~~~R~~~~~~~~~~~~yW~mWkLPmFg~td~~~Vl~El~~C---~k~~P~~YVRligfD 104 (128)
T 1wdd_S 28 KQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEA---KKAYPDAFVRIIGFD 104 (128)
T ss_dssp HHHHHHHHTTCEEEEEEESCCSCBCSSCCSTTCCBSCCCEEESCCCTTCCCHHHHHHHHHHH---HHHCTTSEEEEEEEE
T ss_pred HHHHHHHHCCCeeeEEecCCCceeeccCCCCCcccCCcccccCccCccCCCHHHHHHHHHHH---HHHCCCCeEEEEEEe
Confidence 45566678887788888887732 1 2221 01110 0 01 124999999999999
Q ss_pred CCCc----eEEEeCCCCC
Q 029371 147 ANSD----EFEIRDPASC 160 (194)
Q Consensus 147 ~~~~----~~~~~DPa~~ 160 (194)
...+ +|++.-|+..
T Consensus 105 n~~q~q~~sfIv~RP~~~ 122 (128)
T 1wdd_S 105 NVRQVQLISFIAYKPPGC 122 (128)
T ss_dssp TTTTEEEEEEEEECCTTC
T ss_pred CCCCEEEEEEEEECCCCc
Confidence 9988 5777777654
No 53
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=71.59 E-value=20 Score=27.81 Aligned_cols=66 Identities=17% Similarity=0.263 Sum_probs=41.1
Q ss_pred HHHHHHHHcCCcEEEEEEcCCCc-ccccc---cccccc-----------CccCCCCCCcceEEEEEEeeCCCc------e
Q 029371 93 VEISLMILSGNYIAIALVDQYKL-SHSWM---EDVIVP-----------GFYGSDSGYTGHYILICGYDANSD------E 151 (194)
Q Consensus 93 ~eI~~~L~~G~~~~IvLvd~~~L-~~~~~---~~~~~~-----------~~~~~~~~Y~GHYVVLcGYd~~~~------~ 151 (194)
++|...|++|=.|.|=..|.+-- ..+|. -+.+.. .|. ..|.||||=|+|||...+ +
T Consensus 21 kQI~Yll~qGw~p~iEf~d~~~~r~~yW~mWkLPmF~~td~~~Vl~Ele~C~---k~~p~~YVRliGfD~~~~~qs~~~s 97 (138)
T 1bwv_S 21 KQIDYMISKKLAIGIEYTNDIHPRNAYWEIWGLPLFDVTDPAAVLFEINACR---KARSNFYIKVVGFSSVRGIESTIIS 97 (138)
T ss_dssp HHHHHHHHTTCEEEEEEESCCCTTCCCCEECSSCBCSCCCHHHHHHHHHHHH---HHCTTSEEEEEEEECCTTTCEEEEE
T ss_pred HHHHHHHHCCCeeeEEecCCCCCccCEEeccCCCCcCCCCHHHHHHHHHHHH---HHCCCCeEEEEEEeCCCceEEEEEE
Confidence 34566678887778878876533 22331 111110 111 249999999999999884 5
Q ss_pred EEEeCCCCCC
Q 029371 152 FEIRDPASCR 161 (194)
Q Consensus 152 ~~~~DPa~~~ 161 (194)
|++.-|....
T Consensus 98 fIV~RP~~~p 107 (138)
T 1bwv_S 98 FIVNRPKHEP 107 (138)
T ss_dssp EEEECCSCCC
T ss_pred EEEECCCCCC
Confidence 6777787554
No 54
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=66.99 E-value=4.6 Score=30.42 Aligned_cols=45 Identities=16% Similarity=0.099 Sum_probs=36.7
Q ss_pred CeeeccCCCCCChhHHHhhhc--CCceeHHHHHHHHhhcCcceeeeec
Q 029371 1 MVLRTIGINNCNIQGLAEQCC--TTSIWTVDLAYLLQKFNVGFSYFTI 46 (194)
Q Consensus 1 MvL~~~g~~~~~~~~l~~~c~--~~S~WTIDLaylL~~~gv~~~f~T~ 46 (194)
|+++++|++ .+.+.+.+.+. ..++-.-+|..+++++|++...+..
T Consensus 24 ~i~~~~g~~-~s~~~L~~~~~~~~~g~s~~~l~~~a~~~Gl~a~~~~~ 70 (156)
T 3k8u_A 24 SVAKHYGSN-YSIAYLRELSKTNKQGTTALGIVEAAKKLGFETRSIKA 70 (156)
T ss_dssp HHHHHTTCC-CCHHHHHHHTTCBTTBCCHHHHHHHHHHTTEEEEEEEC
T ss_pred HHHHHhCCC-CCHHHHHHHcCCCCCCcCHHHHHHHHHHCCCeeEEEEe
Confidence 688899987 78888888885 3445567899999999999888774
No 55
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=66.56 E-value=5.5 Score=31.10 Aligned_cols=29 Identities=17% Similarity=0.579 Sum_probs=21.6
Q ss_pred CCcceEEEEEEeeCCCc----eEEEeCCCCCCc
Q 029371 134 GYTGHYILICGYDANSD----EFEIRDPASCRK 162 (194)
Q Consensus 134 ~Y~GHYVVLcGYd~~~~----~~~~~DPa~~~~ 162 (194)
.|.||||=|+|||...| +|++.-|+....
T Consensus 99 ~~P~~YVRligfDn~~q~q~~sfIV~RP~~~~~ 131 (140)
T 1gk8_I 99 AFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARD 131 (140)
T ss_dssp HCTTSEEEEEEEETTTTEEEEEEEEECC-----
T ss_pred HCCCCeEEEEEEeCCCCEEEEEEEeECCCCCCC
Confidence 49999999999999988 688888887643
No 56
>3dth_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Probab=64.08 E-value=11 Score=33.32 Aligned_cols=42 Identities=24% Similarity=0.172 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCceEeccccHHHHHHHHHcCCcEEEEEEcCC
Q 029371 72 DMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQY 113 (194)
Q Consensus 72 ~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~~~IvLvd~~ 113 (194)
..+.+.|++.|++|++|.++++|+.+...+|..-.+-+.++.
T Consensus 278 ~~vl~la~~~G~~v~Er~i~~~eL~~a~~~g~~dEvf~tgTa 319 (372)
T 3dth_A 278 DSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTA 319 (372)
T ss_dssp HHHHHHHHHHTCEEEECCCBHHHHHHHHHHTSEEEEEEEETT
T ss_pred HHHHHHHHHCCCeEEEEECCHHHHHhhhhcCCccEEEEeccc
Confidence 667888999999999999999999999999976666666665
No 57
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=61.64 E-value=5 Score=28.51 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=23.4
Q ss_pred eEEEeCCCCCCceeeeChHHHHHHHhh
Q 029371 151 EFEIRDPASCRKREKVTLKCLEEARKS 177 (194)
Q Consensus 151 ~~~~~DPa~~~~~~~~s~~~~e~AR~s 177 (194)
.+.|+||++.+.+ -.+.++||.||..
T Consensus 45 ~LsYk~~~s~~~v-i~~d~dl~~aw~~ 70 (83)
T 1oey_A 45 KLSYRPRDSNELV-PLSEDSMKDAWGQ 70 (83)
T ss_dssp CEEECCTTCSSCE-ECCTTTHHHHHTT
T ss_pred EEEeeCCCCCCee-ccChHHHHHHHHh
Confidence 4789999998888 7999999999987
No 58
>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}
Probab=60.20 E-value=3.9 Score=29.41 Aligned_cols=45 Identities=11% Similarity=-0.020 Sum_probs=36.5
Q ss_pred CeeeccCCCCCChhHHHhhhc--CCceeHHHHHHHHhhcCcceeeeec
Q 029371 1 MVLRTIGINNCNIQGLAEQCC--TTSIWTVDLAYLLQKFNVGFSYFTI 46 (194)
Q Consensus 1 MvL~~~g~~~~~~~~l~~~c~--~~S~WTIDLaylL~~~gv~~~f~T~ 46 (194)
|+++++|++ .+.+.+.+.+. ..++---+|..+++++|++..-...
T Consensus 14 ~i~~~~g~~-~~~~~l~~~~~~~~~g~s~~~l~~~a~~~Gl~~~~~~~ 60 (129)
T 3b79_A 14 YVSRYYGLA-NSPEALVNGLPLSDGKLTPFLLPRAAERAGLVAKENRA 60 (129)
T ss_dssp HHHHHTTCC-CCHHHHHTTCCCBTTBCCTTTHHHHHHHHTEEEEEEEC
T ss_pred HHHHHhCCC-CCHHHHHhcCCCcCCCCCHHHHHHHHHHCCCeEEEEEC
Confidence 788999988 78899988885 2345556799999999999887774
No 59
>3zua_A CLD, alpha-hemolysin translocation ATP-binding protein; C39 peptidase-like domain, ABC transporter, haemolysin, HYDR heteronuclear; NMR {Escherichia coli}
Probab=59.66 E-value=6.5 Score=29.05 Aligned_cols=45 Identities=4% Similarity=0.036 Sum_probs=36.6
Q ss_pred CeeeccCCCCCChhHHHhhhc--CCceeHHHHHHHHhhcCcceeeeec
Q 029371 1 MVLRTIGINNCNIQGLAEQCC--TTSIWTVDLAYLLQKFNVGFSYFTI 46 (194)
Q Consensus 1 MvL~~~g~~~~~~~~l~~~c~--~~S~WTIDLaylL~~~gv~~~f~T~ 46 (194)
|+++++|++ .+.+.+.+.+. ..++--.+|..+.+++|++.+-+..
T Consensus 21 ~i~~~~g~~-~s~~~L~~~~~~~~~g~s~~~l~~aa~~~Gl~a~~~~~ 67 (142)
T 3zua_A 21 ILAQYHNVS-VNPEEIKHRFDTDGTGLGLTSWLLAAKSLELKVKQVKK 67 (142)
T ss_dssp HHHHHTTCC-CCHHHHHHHTCTTSSCCCHHHHHHHHHTTTEEEEEEEC
T ss_pred HHHHHcCCC-CCHHHHHHHcCCCcCCcCHHHHHHHHHHCCCeeEEeec
Confidence 688999987 78889988885 3445567899999999999887764
No 60
>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=58.15 E-value=2 Score=36.72 Aligned_cols=76 Identities=17% Similarity=0.165 Sum_probs=22.1
Q ss_pred eeeccCCCCC-ChhHHH-----hhhcCCceeHHHHHHHHhhcCcceeeeecccCCCCCCCcchhhc-ccccchhhHHHHH
Q 029371 2 VLRTIGINNC-NIQGLA-----EQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYK-EQLPTDLVRVDML 74 (194)
Q Consensus 2 vL~~~g~~~~-~~~~l~-----~~c~~~S~WTIDLaylL~~~gv~~~f~T~tlG~np~y~~~~fY~-~~~~~D~~RV~~l 74 (194)
.||.|||+-. .-..+. .+|.....-+.+.|-||++||++..-|...+- -.|....+|. +.++.++.-+...
T Consensus 139 ~l~~LgIptki~~g~I~i~~d~~v~~~G~~l~~~~a~lL~~L~i~~~~~~l~i~--~~~~~~~~~~~~vl~i~~e~~~~~ 216 (284)
T 3a1y_G 139 QMQALGIPARIEKGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVL--AVYEDGIVYTPDVLAIDEQEYIDM 216 (284)
T ss_dssp --------------------------------------------CCCCCCCEEE--EEEETTEEECHHHHSCCHHHHHHH
T ss_pred HHHHCCCCeEEecCeeEeecceEEEecCCCcCHHHHHHHHHcCCCHHHHHHHHH--HHhhccccCCHHHccCCHHHHHHH
Confidence 4788888732 112233 78888888999999999999998765544332 4555556665 4566666666666
Q ss_pred HHHHH
Q 029371 75 FQKAR 79 (194)
Q Consensus 75 F~~A~ 79 (194)
|++|.
T Consensus 217 ~~~a~ 221 (284)
T 3a1y_G 217 LQKAY 221 (284)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 61
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=57.43 E-value=13 Score=27.57 Aligned_cols=59 Identities=7% Similarity=0.066 Sum_probs=38.9
Q ss_pred cccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCc
Q 029371 46 ITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNY 104 (194)
Q Consensus 46 ~tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~ 104 (194)
.++|+++++.+-.|..+.=...+-=+.-+=+-++++|+.++-...+..++...+.+|+.
T Consensus 4 l~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~ 62 (227)
T 3tql_A 4 IKFATEATYPPYVYMGPSGQVEGFGADIVKAVCKQMQAVCTISNQPWDSLIPSLKLGKF 62 (227)
T ss_dssp EEEEECSCBTTTBEEC--CCEESHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTSC
T ss_pred EEEEEcCCCCCeeEECCCCCcccchHHHHHHHHHHhCCeEEEEeCCHHHHHHHHhCCCC
Confidence 45667777766666543212222333444455677899988888999999999999973
No 62
>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya}
Probab=55.57 E-value=26 Score=30.86 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=32.2
Q ss_pred cccHHHHHHHHHcCCcEEEEEEcCCCcc-ccccccccccCccCCCCCCcceEEEEEEeeCCCceEEEeC
Q 029371 89 SISGVEISLMILSGNYIAIALVDQYKLS-HSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRD 156 (194)
Q Consensus 89 svs~~eI~~~L~~G~~~~IvLvd~~~L~-~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~~~~~~~~D 156 (194)
..+...++..+.+| |+.|-+|+..-. -...+.+.. ..++ ...+|-|+|+||+.+ =.+++|
T Consensus 266 ~~~e~~l~~~v~~g--Pvsvai~a~~~~F~~Y~sGVy~-~~~~---~~lnHaV~iVGyG~~--YWIVKN 326 (363)
T 3tnx_A 266 PYNEGALLYSIANQ--PVSVVLEAAGKDFQLYRGGIFV-GPCG---NKVDHAVAAVGYGPN--YILIRN 326 (363)
T ss_dssp SSCHHHHHHHHTTS--CEEEEECCCSHHHHTEEEEEEC-CCCC---SCCCEEEEEEEEETT--EEEEEC
T ss_pred hhhHHHHHHHHHcC--CcEEEEEecchhhhCCCCCEEC-CCCC---CCCCeEEEEEEcCCC--cEEEEe
Confidence 33455677777777 666777764210 000111211 1222 235899999999853 355555
No 63
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A*
Probab=53.66 E-value=23 Score=30.79 Aligned_cols=42 Identities=10% Similarity=0.043 Sum_probs=35.6
Q ss_pred HHHHHHHHHc-CCceEeccccHHHHHHHHHcCCcEEEEEEcCC
Q 029371 72 DMLFQKARSA-GIKIECGSISGVEISLMILSGNYIAIALVDQY 113 (194)
Q Consensus 72 ~~lF~~A~~~-gi~v~~rsvs~~eI~~~L~~G~~~~IvLvd~~ 113 (194)
..+.+.|++. |++|++|.++.+||.+...+|..-.+-++|+.
T Consensus 272 ~~vl~la~~~~G~~v~Er~i~~~eL~~A~~~g~~dEvf~tnt~ 314 (365)
T 2a1h_A 272 QSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTA 314 (365)
T ss_dssp HHHHHHHHHHTSSEEEECCCBHHHHHHHHHTTCEEEEEEEETT
T ss_pred HHHHHHHHhcCCCceEEEeCCHHHHHHHHhcCCccEEEEcCCe
Confidence 5677888985 99999999999999999999975567777765
No 64
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A
Probab=52.59 E-value=34 Score=31.22 Aligned_cols=87 Identities=11% Similarity=0.099 Sum_probs=47.4
Q ss_pred ceEeccccHHHHH----HHHHcCCcEEEEEEcCCCccccccccccccCcc-----C------------CCCCCcceEEEE
Q 029371 84 KIECGSISGVEIS----LMILSGNYIAIALVDQYKLSHSWMEDVIVPGFY-----G------------SDSGYTGHYILI 142 (194)
Q Consensus 84 ~v~~rsvs~~eI~----~~L~~G~~~~IvLvd~~~L~~~~~~~~~~~~~~-----~------------~~~~Y~GHYVVL 142 (194)
+|.---++++++. ..|.+| +|+-+-+|++... ...+.+..+.++ + .......|-|+|
T Consensus 300 ~~~y~Nvp~d~l~~~~~~aL~~g-~PV~~~~Dv~~~~-~~~~GI~~~~~~~~~~fg~~~~m~KaeRl~~~~s~~~HAmli 377 (457)
T 2e01_A 300 AVIYLNVDNETLSKLVVKRLQNN-KAVFFGSHTPKFM-DKKTGVMDIELWNYPAIGYNLPQQKASRIRYHESLMTAAMLI 377 (457)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTT-CCEEEEECTTTTE-ETTTTEECTTSBCGGGGTCCCCCCHHHHHHTTSCCCCEEEEE
T ss_pred ceeEEEcCHHHHHHHHHHHHHhC-CCEEEEEEcCHhH-cccCceecccccchhhcCcccccCHHHhhccCCCCCCeEEEE
Confidence 4444456777654 456778 4999999987421 111222222221 0 011246799999
Q ss_pred EEeeCC-Cc----eEEEeCCCCCC----ceeeeChHHHH
Q 029371 143 CGYDAN-SD----EFEIRDPASCR----KREKVTLKCLE 172 (194)
Q Consensus 143 cGYd~~-~~----~~~~~DPa~~~----~~~~~s~~~~e 172 (194)
+||+.+ .+ ...++|-=-.. -..+|+.+-|+
T Consensus 378 vGyg~d~~G~~p~yW~VkNSWG~~wG~~GY~~ms~~wf~ 416 (457)
T 2e01_A 378 TGCHVDETSKLPLRYRVENSWGKDSGKDGLYVMTQKYFE 416 (457)
T ss_dssp EEEEECTTTCCEEEEEEECSSCTTSTBTTEEEEEHHHHH
T ss_pred EEEEeccCCCccCEEEEEeCccCCcCCCceEEeehhhHh
Confidence 999964 33 36677632221 14555555443
No 65
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=52.51 E-value=21 Score=27.69 Aligned_cols=65 Identities=15% Similarity=0.317 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCcEEEEEEcCCCc-ccccc---cccccc-----------CccCCCCCCcceEEEEEEeeCCCc------e
Q 029371 93 VEISLMILSGNYIAIALVDQYKL-SHSWM---EDVIVP-----------GFYGSDSGYTGHYILICGYDANSD------E 151 (194)
Q Consensus 93 ~eI~~~L~~G~~~~IvLvd~~~L-~~~~~---~~~~~~-----------~~~~~~~~Y~GHYVVLcGYd~~~~------~ 151 (194)
++|...|++|=.|.|=..|.+-- ..+|. -+.+.. .|. ..|.||||=|+|||...+ +
T Consensus 21 kQI~YlL~qGw~p~lE~~d~~~~r~~yW~mWkLPmF~~td~~~Vl~Ele~C~---k~~p~~YVRliGfD~~~~~qs~~~s 97 (139)
T 1bxn_I 21 KQLEYCLNQGWAVGLEYTDDPHPRNTYWEMFGLPMFDLRDAAGILMEINNAR---NTFPNHYIRVTAFDSTHTVESVVMS 97 (139)
T ss_dssp HHHHHHHHHTCEEEEEEESCCCTTCCCCEESSSCBTTCCCHHHHHHHHHHHH---HHCSSSEEEEEEECTTTCCEEEEEE
T ss_pred HHHHHHHHCCCeEEEEeccCCccccCEEeecCCCCcCCCCHHHHHHHHHHHH---HHCCCCeEEEEEEeCCCceEEEEEE
Confidence 34555677887777777876533 22331 111110 111 249999999999999884 3
Q ss_pred EEEeCCCCC
Q 029371 152 FEIRDPASC 160 (194)
Q Consensus 152 ~~~~DPa~~ 160 (194)
|++.-|...
T Consensus 98 fIV~RP~~~ 106 (139)
T 1bxn_I 98 FIVNRPADE 106 (139)
T ss_dssp CCCCGGGSC
T ss_pred EEEECCCCC
Confidence 455556543
No 66
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=52.50 E-value=5.9 Score=30.92 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=40.0
Q ss_pred ecccCCCCCCCcchhhcccccchhhHHHHHHHHHHHc-CCceEeccccHHHHHHHHHcCCc
Q 029371 45 TITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSA-GIKIECGSISGVEISLMILSGNY 104 (194)
Q Consensus 45 T~tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~-gi~v~~rsvs~~eI~~~L~~G~~ 104 (194)
|.++|.+|+|-+-+|..+.=.-.+-=|.-+-+-|+++ |+.++-...+..++...|.+|+.
T Consensus 10 tl~vg~~~~~pP~~~~d~~G~~~G~~vdl~~~ia~~l~g~~~~~~~~~~~~~~~~l~~g~~ 70 (243)
T 4gvo_A 10 TITVGTGTQFPNVCFLDENGKLTGYDVELVKEIDKRLPGYKFKFKTMDFSNLLVSLGAGKV 70 (243)
T ss_dssp EEEEEECSEETTTEEECTTSCEESHHHHHHHHHHHTCTTEEEEEEECCGGGHHHHHHTTSC
T ss_pred eEEEEECCCCCCeEEECCCCcEEEhHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCC
Confidence 5677888888888777533111111122222336675 89988888999999999999984
No 67
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=50.87 E-value=14 Score=26.20 Aligned_cols=46 Identities=15% Similarity=0.036 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCcEEEEEEcCCC
Q 029371 68 LVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYK 114 (194)
Q Consensus 68 ~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~~~IvLvd~~~ 114 (194)
+..+..+-+.++..+||+. ...|.+||-..+-.....+++++|.++
T Consensus 46 ~~~~~~i~~~c~~~~ip~~-~~~s~~eLG~a~Gk~~~~~vai~d~g~ 91 (101)
T 3on1_A 46 IHTKKKLLDKCGSYQIPVK-VVGNRQMLGRAIGKHERVVIGVKDAGF 91 (101)
T ss_dssp HHHHHHHHHHHHHHTCCEE-EESCHHHHHHHTTSSCCSEEEECCHHH
T ss_pred HHHHHHHHHHHHHcCCCEE-EeCCHHHHHHHhCCcCeEEEEEECccH
Confidence 4556677788999999986 468999999988764457888888763
No 68
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A*
Probab=50.40 E-value=26 Score=30.94 Aligned_cols=42 Identities=5% Similarity=0.003 Sum_probs=35.3
Q ss_pred HHHHHHHHH-cCCceEeccccHHHHHHHHHcCCcEEEEEEcCC
Q 029371 72 DMLFQKARS-AGIKIECGSISGVEISLMILSGNYIAIALVDQY 113 (194)
Q Consensus 72 ~~lF~~A~~-~gi~v~~rsvs~~eI~~~L~~G~~~~IvLvd~~ 113 (194)
..+.+.|++ .|+.|++|.++++|+.+...+|..-.+-+.++.
T Consensus 292 ~~vl~la~~~~G~~V~Er~i~~~eL~~A~~~g~~dEvF~tgTa 334 (386)
T 2coi_A 292 RCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTA 334 (386)
T ss_dssp HHHHHHHHHHCSSEEEECCCBHHHHHHHHTTTCEEEEEEEETT
T ss_pred HHHHHHHHhccCCcEEEEECCHHHHHHHHhcCCccEEEEecce
Confidence 567788898 799999999999999999999975566666665
No 69
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=50.02 E-value=37 Score=24.28 Aligned_cols=48 Identities=10% Similarity=-0.033 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCcE-EEEEEcCCCc
Q 029371 68 LVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYI-AIALVDQYKL 115 (194)
Q Consensus 68 ~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~~-~IvLvd~~~L 115 (194)
++++..+-..+...+||+.....|.+||-..+-..... +++++|.++-
T Consensus 50 ~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~A~Gk~~~~~~vaI~D~G~a 98 (105)
T 3u5e_c 50 VLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSILEAGDS 98 (105)
T ss_dssp HHHHHHHHHHHHHHTCEEEECSSCHHHHHHHTTCSSCCSEEEEEECCSC
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCHHHHHHHhCCcccEEEEEEeccchH
Confidence 55667788889999999976678999999988554223 5888998853
No 70
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=48.05 E-value=15 Score=27.80 Aligned_cols=59 Identities=7% Similarity=-0.013 Sum_probs=37.3
Q ss_pred cccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCc
Q 029371 46 ITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNY 104 (194)
Q Consensus 46 ~tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~ 104 (194)
.++|+++++.+-.|..+.=.-.+-=+.-+-+-++++|+.++-...+..++...+.+|+.
T Consensus 6 l~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~ 64 (239)
T 1lst_A 6 VRIGTDTTYAPFSSKDAKGEFIGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKI 64 (239)
T ss_dssp EEEEECSCBTTTBEECTTCCEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHTTSC
T ss_pred EEEEECCCcCCeeEECCCCCEeeEHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHhCCCC
Confidence 34566677777666543211112222333344566799888888899999999999973
No 71
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=47.37 E-value=20 Score=25.46 Aligned_cols=46 Identities=13% Similarity=-0.036 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCcEEEEEEcCCC
Q 029371 68 LVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYK 114 (194)
Q Consensus 68 ~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~~~IvLvd~~~ 114 (194)
+.....+-+.++..+||+..- .|.+||-..+-.....+++++|.++
T Consensus 47 ~~~~~~i~~~c~~~~vp~~~~-~s~~eLG~A~Gk~~~~~~ai~D~g~ 92 (101)
T 3v7q_A 47 SNTAKKVTDKCNYYKVPYKKV-ESRAVLGRSIGKEARVVVAVTDQGF 92 (101)
T ss_dssp HHHHHHHHHHHHHTTCCEEEE-SCHHHHHHHTTSSCCSEEEECCHHH
T ss_pred ccchhhhcccccccCCCeeee-chHHHHHhhhCccceEEEEEeccHH
Confidence 556667777899999998544 8999999988765457899988764
No 72
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=46.49 E-value=17 Score=27.11 Aligned_cols=59 Identities=8% Similarity=0.053 Sum_probs=37.4
Q ss_pred cccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCc
Q 029371 46 ITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNY 104 (194)
Q Consensus 46 ~tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~ 104 (194)
.++|++|++.+-.|..+.=...+-=+.-+=.-++++|+.++-...+..++...+.+|+.
T Consensus 8 l~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~ 66 (229)
T 2y7i_A 8 LHFGTSATYAPYEFVDADNKIVGFDIDVANAVCKEMQAECSFTNQSFDSLIPSLRFKKF 66 (229)
T ss_dssp EEEEECCCBTTTBEECTTSCEESHHHHHHHHHHHHTTCEEEEEECCGGGHHHHHHTTSC
T ss_pred EEEEeCCCcCCceEECCCCCCcceeHHHHHHHHHHhCCeEEEEEcCHHHHHHHHhCCCc
Confidence 34566667666655543211122223333345667799888778899999999999973
No 73
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A
Probab=46.26 E-value=58 Score=29.66 Aligned_cols=81 Identities=11% Similarity=-0.005 Sum_probs=44.3
Q ss_pred ccHHHHH----HHHHcCCcEEEEEEcCCCccccccccccccCcc------CCC-------------CCCcceEEEEEEee
Q 029371 90 ISGVEIS----LMILSGNYIAIALVDQYKLSHSWMEDVIVPGFY------GSD-------------SGYTGHYILICGYD 146 (194)
Q Consensus 90 vs~~eI~----~~L~~G~~~~IvLvd~~~L~~~~~~~~~~~~~~------~~~-------------~~Y~GHYVVLcGYd 146 (194)
++++++. ..|.+| +|+-+-+|++...-. .+.+..+.++ +.+ ..-.-|-|+|+||+
T Consensus 302 vp~~~l~~~~~~al~~g-~PV~~~~Dv~~~~~~-k~GI~~~~~~~~~~~fg~~~~~m~KaeRl~~~~s~~~HAmlivGyg 379 (453)
T 2cb5_A 302 QPIDFLKKMVAASIKDG-EAVWFGCDVGKHFNS-KLGLSDMNLYDHELVFGVSLKNMNKAERLTFGESLMTHAMTFTAVS 379 (453)
T ss_dssp CCHHHHHHHHHHHHHTT-CCEEEEECTTTTEET-TTTEECTTSBCHHHHHSCCSCSSCHHHHHHTTSCCCCEEEEEEEEE
T ss_pred cCHHHHHHHHHHHHHcC-CCEEEEEEeChhhcc-CCcEEcCccccchhhcCccccccCHHHHhhccCCCCCeEEEEEEec
Confidence 4566653 567788 499999999753111 1222222221 111 12467999999999
Q ss_pred --CC-Cc---eEEEeCCCCCC----ceeeeChHHHH
Q 029371 147 --AN-SD---EFEIRDPASCR----KREKVTLKCLE 172 (194)
Q Consensus 147 --~~-~~---~~~~~DPa~~~----~~~~~s~~~~e 172 (194)
.+ .+ ...++|-=-.. -..+|+..-|+
T Consensus 380 ~~~d~~G~~~yWiVkNSWG~~wG~~GY~~ms~~wf~ 415 (453)
T 2cb5_A 380 EKDDQDGAFTKWRVENSWGEDHGHKGYLCMTDEWFS 415 (453)
T ss_dssp ECTTSCSCEEEEEEECSBCTTSTBTTEEEEEHHHHH
T ss_pred cccccCCCccEEEEEcCcCCCcCcCceEEechhhHh
Confidence 54 34 36666632211 25556655444
No 74
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=45.87 E-value=16 Score=27.72 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=39.6
Q ss_pred ecccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCc
Q 029371 45 TITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNY 104 (194)
Q Consensus 45 T~tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~ 104 (194)
+.++|++|++.+-.|..+.=.-.+-=|.-+-.-|+++|+.++-...+..++...|.+|+.
T Consensus 12 ~l~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~ 71 (242)
T 3del_B 12 KFIVGTNATYPPFEFVDKRGEVVGFDIDLAREISNKLGKTLDVREFSFDALILNLKQHRI 71 (242)
T ss_dssp EEEEEECSCBTTTBEECTTSCEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHTTSS
T ss_pred cEEEEeCCCCCCeeEECCCCCEEEeeHHHHHHHHHHcCCceEEEEcCHHHHHHHHhCCCc
Confidence 345667777777666533211112223334455677899988888899999999999974
No 75
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Probab=44.71 E-value=4.6 Score=35.73 Aligned_cols=76 Identities=13% Similarity=0.172 Sum_probs=0.0
Q ss_pred eeccCCCCC------ChhHHHhhhcCCceeHHHHHHHHhhcCcceeeeecccCCCCCCCcchhhc-ccccchhhHHHHHH
Q 029371 3 LRTIGINNC------NIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYK-EQLPTDLVRVDMLF 75 (194)
Q Consensus 3 L~~~g~~~~------~~~~l~~~c~~~S~WTIDLaylL~~~gv~~~f~T~tlG~np~y~~~~fY~-~~~~~D~~RV~~lF 75 (194)
||.|||+-. .+..=..+|...-.=+-..|-||++||++...|... +---|...++|. +.++.|+.-+...|
T Consensus 142 fq~LgIPTkI~kG~I~I~~d~~v~k~G~~v~~~~A~LL~~LgI~p~~f~l~--l~~~~d~g~~~~~~vL~i~~e~~~~~~ 219 (348)
T 1vq8_G 142 LQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNELGIEPKEVGLD--LRAVFADGVLFEPEELELDIDEYRSDI 219 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHcCCCEEeccCceEecCceEEeeCCCCcCHHHHHHHHHcCCCceeeeee--eEEEEeCCcccCHHHccCCHHHHHHHH
Confidence 677777621 123335567655566677999999999988766654 447788888887 56888888778888
Q ss_pred HHHHH
Q 029371 76 QKARS 80 (194)
Q Consensus 76 ~~A~~ 80 (194)
++|-.
T Consensus 220 ~~~~~ 224 (348)
T 1vq8_G 220 QAAAG 224 (348)
T ss_dssp -----
T ss_pred HHHHH
Confidence 77763
No 76
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=44.53 E-value=28 Score=28.90 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=40.4
Q ss_pred ecccCCCCCCCcchhhcccccchhhHHHHHH-HHHHHcCCceEec-cccHHHHHHHHHcCCcEEEEEEc
Q 029371 45 TITLGANPNYSVETFYKEQLPTDLVRVDMLF-QKARSAGIKIECG-SISGVEISLMILSGNYIAIALVD 111 (194)
Q Consensus 45 T~tlG~np~y~~~~fY~~~~~~D~~RV~~lF-~~A~~~gi~v~~r-svs~~eI~~~L~~G~~~~IvLvd 111 (194)
|.++|+.|.+....+... + ..+. .-++++|+.|+.. ..+..++.+.|.+|+ .=|++..
T Consensus 5 ~l~iG~~p~~~p~~~~~~-------~-~~l~~~l~k~lG~~ve~~~~~~~~~~i~al~~G~-vDi~~~~ 64 (310)
T 3n5l_A 5 VINFGIISTESSQNLKSI-------W-EPFLKDMSQQTGYQVKAFFAPDYAGIIQGMRFDK-VDIAWYG 64 (310)
T ss_dssp EEEEEECCSSCHHHHHHH-------H-HHHHHHHHHHHSSEEEEECCSSHHHHHHHHHTTS-CSEEECC
T ss_pred EEEEEEecCCCHHHHHHH-------H-HHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHcCC-CCEEEEC
Confidence 567899999988766521 1 1222 2356789999876 568999999999997 4444433
No 77
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=44.05 E-value=33 Score=26.62 Aligned_cols=62 Identities=11% Similarity=0.071 Sum_probs=38.8
Q ss_pred ecccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCcEE
Q 029371 45 TITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIA 106 (194)
Q Consensus 45 T~tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~~~ 106 (194)
+.++|.+|+|.+-.|..+.=...+-=|.-+=.-+++.|+.++-...+..++...+.+|+.=+
T Consensus 30 ~l~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~ 91 (259)
T 4dz1_A 30 TLNVAVSPASPPMLFKSADGKLQGIDLELFSSYCQSRHCKLNITEYAWDGMLGAVASGQADV 91 (259)
T ss_dssp EEEEEECCCBTTTBEECTTCCEESHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHTSSSE
T ss_pred eEEEEECCCCCCeEEECCCCCEEEeHHHHHHHHHHHhCCeEEEEEcCHHHHHHHHhCCCCCE
Confidence 34556667776666654221111212222334466779999888889999999999997433
No 78
>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A*
Probab=43.04 E-value=39 Score=29.49 Aligned_cols=33 Identities=30% Similarity=0.249 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCceEeccccHHHHHHHHHcCCc
Q 029371 72 DMLFQKARSAGIKIECGSISGVEISLMILSGNY 104 (194)
Q Consensus 72 ~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~ 104 (194)
+.+.+.|+++|++|++|.++++|+.+....|..
T Consensus 278 ~sVi~LA~~~Gi~V~Er~it~~El~~A~~~~~~ 310 (372)
T 3dtg_A 278 DSLLQLATDAGFAVEERKIDVDEWQKKAGAGEI 310 (372)
T ss_dssp HHHHHHHHHHTCEEEECCCBHHHHHHHHHHTSE
T ss_pred HHHHHHHHHCCceEEEEeCCHHHHHHHhhcCCC
Confidence 567788999999999999999999998777753
No 79
>2z84_A UFSP1, UFM1-specific protease 1; alpha/beta, papain like fold, hydrolase, thiol protease, UBL conjugation pathway; 1.70A {Mus musculus}
Probab=42.29 E-value=1.4e+02 Score=24.54 Aligned_cols=81 Identities=12% Similarity=0.091 Sum_probs=51.2
Q ss_pred CCcee--HHHHHHHHhh-cCcceeeeecccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceEeccccHHHHHHH
Q 029371 22 TTSIW--TVDLAYLLQK-FNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLM 98 (194)
Q Consensus 22 ~~S~W--TIDLaylL~~-~gv~~~f~T~tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~ 98 (194)
++.-| |.+.+++|.. +||+++....+-|. . ++. -.++|.++
T Consensus 89 GSrkWIGt~E~~~~l~sllgI~cki~~~~~g~--~----------~~~------------------------~~~~l~~h 132 (218)
T 2z84_A 89 GSRNWIGCVEASLCLEHFGGPQGRLCHLPRGV--G----------LRG------------------------EEERLYSH 132 (218)
T ss_dssp TCCCCCCHHHHHHHHHHTTCSEEEEEEECSCS--T----------TTT------------------------CHHHHHHH
T ss_pred cccceechHHHHHHHHhhcCCceEEEEccCch--h----------HHH------------------------HHHHHHHH
Confidence 33445 7999999999 89998888864442 1 111 22344444
Q ss_pred HHcCCcEEEEEEcCCCccccccccccccCccCCCCCCcceEEEEEEeeCC-Cc--eEEEeCCCCCC
Q 029371 99 ILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDAN-SD--EFEIRDPASCR 161 (194)
Q Consensus 99 L~~G~~~~IvLvd~~~L~~~~~~~~~~~~~~~~~~~Y~GHYVVLcGYd~~-~~--~~~~~DPa~~~ 161 (194)
..++..|+. +.. +-.||=-.|+|++.. ++ .+++-||.+..
T Consensus 133 F~~~g~PI~-------igG----------------~~~ghS~tIvGve~~~~g~~~lLIlDPhy~~ 175 (218)
T 2z84_A 133 FTTGGGPVM-------VGG----------------DADAQSKALLGICEGPGSEVYVLILDPHYWG 175 (218)
T ss_dssp HHTTCCCEE-------ECC----------------TTTSCCEEEEEEEECTTCCEEEEEECCCCCS
T ss_pred HhcCCCCEE-------ECC----------------CcccccceEEeEEecCCCcEEEEEECCCcCC
Confidence 444323553 211 256898889999832 22 58999999876
No 80
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=42.21 E-value=5.3 Score=34.80 Aligned_cols=76 Identities=17% Similarity=0.166 Sum_probs=0.0
Q ss_pred eeccCCCCC------ChhHHHhhhcCCceeHHHHHHHHhhcCcceeeeecccCCCCCCCcchhhc-ccccchhhHHHHHH
Q 029371 3 LRTIGINNC------NIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYK-EQLPTDLVRVDMLF 75 (194)
Q Consensus 3 L~~~g~~~~------~~~~l~~~c~~~S~WTIDLaylL~~~gv~~~f~T~tlG~np~y~~~~fY~-~~~~~D~~RV~~lF 75 (194)
||.|||+-. .+..=..+|...-.=+-..|-||++||++...|-.. +---|...++|. +.|+.|+.-+...|
T Consensus 138 fq~LgipTkI~kG~I~i~~d~~v~k~G~~v~~~~A~lL~~l~i~p~~~~l~--l~~~~d~g~~~~~~~L~i~~e~~~~~~ 215 (317)
T 2zkr_g 138 FQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLV--IQQVFDNGSIYNPEVLDITEETLHSRF 215 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHcCCCeEeeCCeEEEecceEEecCCCCcCHHHHHHHHHcCCCceeeeee--eeEEEecCcccchHhccCCHHHHHHHH
Confidence 677777621 133335677766666777999999999998766544 446788888887 56888887777778
Q ss_pred HHHHH
Q 029371 76 QKARS 80 (194)
Q Consensus 76 ~~A~~ 80 (194)
++|-.
T Consensus 216 ~~~~~ 220 (317)
T 2zkr_g 216 LEGVR 220 (317)
T ss_dssp -----
T ss_pred HHHHH
Confidence 77654
No 81
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=41.62 E-value=32 Score=28.97 Aligned_cols=62 Identities=11% Similarity=0.047 Sum_probs=41.0
Q ss_pred ceeeeecccCCCCCCCcchhhcccccchhhHHHHHH-HHHHHcCCceEec-cccHHHHHHHHHcCCcEEEEEE
Q 029371 40 GFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLF-QKARSAGIKIECG-SISGVEISLMILSGNYIAIALV 110 (194)
Q Consensus 40 ~~~f~T~tlG~np~y~~~~fY~~~~~~D~~RV~~lF-~~A~~~gi~v~~r-svs~~eI~~~L~~G~~~~IvLv 110 (194)
.-..-|.++|+-|.+....+. + +-..+. .-++++|+.|+.. ..+..++.+.|.+|+ +=|++.
T Consensus 10 ~~~~~~l~~Gv~p~~~~~~~~-------~-~~~~l~~~L~k~lG~~ve~~~~~~~~~~i~aL~~G~-vDia~~ 73 (321)
T 3p7i_A 10 EEQEKALNFGIISTESQQNLK-------P-QWTPFLQDMEKKLGVKVNAFFAPDYAGIIQGMRFNK-VDIAWY 73 (321)
T ss_dssp ----CCEEEEECCSSCHHHHH-------H-HHHHHHHHHHHHHTSCEEEECCSSHHHHHHHHHTTS-CSEEEC
T ss_pred hhcCCcEEEEEecCCCHHHHH-------H-HHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHcCC-CcEEEE
Confidence 334557789999998877554 1 112232 3466789999875 578999999999998 445544
No 82
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=41.41 E-value=60 Score=22.78 Aligned_cols=47 Identities=21% Similarity=0.074 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCc-EEEEEEcCCC
Q 029371 68 LVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNY-IAIALVDQYK 114 (194)
Q Consensus 68 ~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~-~~IvLvd~~~ 114 (194)
++.+..+-..++..+||+..-..|.+||-..+-.... .+++++|.+.
T Consensus 44 ~~~~~~l~~~c~~~~vp~~~~~~s~~eLG~a~G~~~~~~~vai~d~g~ 91 (101)
T 1w41_A 44 PDIKEDIEYYARLSGIPVYEFEGTSVELGTLLGRPHTVSALAVVDPGA 91 (101)
T ss_dssp HHHHHHHHHHHHHHTCCEEEESSCHHHHHHHTTCSSCCCEEEEEECTT
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCHHHHHHHhCCCCcEEEEEEecCCH
Confidence 5667788889999999985545799999998866522 3688888874
No 83
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=39.77 E-value=1e+02 Score=25.04 Aligned_cols=24 Identities=13% Similarity=-0.039 Sum_probs=21.0
Q ss_pred CCceeHHHHHHHHhhcCcceeeee
Q 029371 22 TTSIWTVDLAYLLQKFNVGFSYFT 45 (194)
Q Consensus 22 ~~S~WTIDLaylL~~~gv~~~f~T 45 (194)
++++-|..|+.+|++.|.++.|+-
T Consensus 34 GKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 34 GKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cHHHHHHHHHHHHHhCCCceEEEe
Confidence 466778999999999999999985
No 84
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=39.46 E-value=70 Score=22.90 Aligned_cols=47 Identities=13% Similarity=0.021 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCcE-EEEEEcCCC
Q 029371 68 LVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYI-AIALVDQYK 114 (194)
Q Consensus 68 ~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~~-~IvLvd~~~ 114 (194)
.+.+..+-..++..+||+..-..|.+||-..+-..... +++++|.+.
T Consensus 49 ~~~~~~l~~~c~~~~Vp~~~~~~sk~eLG~a~G~~~~~s~vaI~d~g~ 96 (110)
T 3cpq_A 49 KDLEEDVKYYAKLSNIPVYQHKITSLELGAVCGKPFPVAALLVLDEGL 96 (110)
T ss_dssp HHHHHHHHHHHHHTTCCEEECCSCHHHHHHHTTCSSCCSEEEEEECTT
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCHHHHHHHhCCccceEEEEEecCCH
Confidence 56678888899999999865558999999988665323 688888874
No 85
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics, protein structure initiative; 2.60A {Pseudomonas aeruginosa}
Probab=39.31 E-value=1.2e+02 Score=26.12 Aligned_cols=72 Identities=14% Similarity=0.071 Sum_probs=46.3
Q ss_pred eeHHHHHHHHhhcCcceeeeecccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCc
Q 029371 25 IWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNY 104 (194)
Q Consensus 25 ~WTIDLaylL~~~gv~~~f~T~tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~ 104 (194)
-|+-++---|++=||...|+|.. |.+.+..-...+....+...+..-.+ .-..|.++|.+..++|+
T Consensus 20 ~~~~~~l~rl~~ggv~~~~~~~~------------~~~~~~~~l~~i~~~~~~~~~~~~~~-~~~~s~~di~~a~~~gk- 85 (325)
T 2i5g_A 20 KWNRELFEDMRKGGLTAANCTVS------------VWEGFQATVNNITASNKLIRDNSDLV-IPVRSTADIRKAKEQGK- 85 (325)
T ss_dssp CCSHHHHHHHHHTTCCEEEEECC------------SSCCHHHHHHHHHHHHHHHHHTTTTE-EECSSHHHHHHHHHTTC-
T ss_pred CCCHHHHHHHHHcCCCEEEEEee------------ccHHHHHHHHHHHHHHHHHHhCCCcE-EeeCCHHHHHHHHhcCC-
Confidence 37777766777889999999863 12223333344555555555443333 44678999999999998
Q ss_pred EEEEEE
Q 029371 105 IAIALV 110 (194)
Q Consensus 105 ~~IvLv 110 (194)
++++|-
T Consensus 86 ia~~l~ 91 (325)
T 2i5g_A 86 TGILYG 91 (325)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 666553
No 86
>4d8b_A Streptopain; papain fold, cysteine protease, secreted, hydrolase; 1.06A {Streptococcus pyogenes} PDB: 4d8e_A* 4d8i_A* 2uzj_A* 2jtc_A
Probab=38.22 E-value=41 Score=28.37 Aligned_cols=14 Identities=36% Similarity=0.517 Sum_probs=12.4
Q ss_pred CcceEEEEEEeeCC
Q 029371 135 YTGHYILICGYDAN 148 (194)
Q Consensus 135 Y~GHYVVLcGYd~~ 148 (194)
-.||-.|+-||+.+
T Consensus 192 ~gGHAwViDGY~~~ 205 (261)
T 4d8b_A 192 VGGHAFVIDGADGR 205 (261)
T ss_dssp TEEEEEEEEEEESS
T ss_pred CCceEEEEcccccC
Confidence 57999999999965
No 87
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=37.96 E-value=50 Score=24.85 Aligned_cols=59 Identities=7% Similarity=0.002 Sum_probs=37.0
Q ss_pred cccCCCCCCCcchhh-cccccchhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCc
Q 029371 46 ITLGANPNYSVETFY-KEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNY 104 (194)
Q Consensus 46 ~tlG~np~y~~~~fY-~~~~~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~ 104 (194)
.++|+++++.+-.|. .+.=.-.+-=|.-+=.-++++|+.++-...+..++...+.+|+.
T Consensus 5 l~v~~~~~~~P~~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~ 64 (237)
T 3kzg_A 5 LTIGTSKFNPPFEVWSGNNSSLYGFDIDLMQEICRRLHATCTFEAYIFDDLFPALKNREV 64 (237)
T ss_dssp EEEEEESEETTTEECCCTTSCCBSHHHHHHHHHHHHTTCEEEEEEECGGGHHHHHHTTSS
T ss_pred EEEEECCCCCCeEEEeCCCCCEeeehHHHHHHHHHHhCCceEEEEcCHHHHHHHHhCCCC
Confidence 344555656666555 22211112223334445677899988888899999999999973
No 88
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=37.55 E-value=38 Score=25.83 Aligned_cols=59 Identities=14% Similarity=0.213 Sum_probs=35.7
Q ss_pred ecccCCCCCCCcchh---hcccccchhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCC
Q 029371 45 TITLGANPNYSVETF---YKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGN 103 (194)
Q Consensus 45 T~tlG~np~y~~~~f---Y~~~~~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~ 103 (194)
+.++|++|++.+-.| ..+.=...+--+.-+=.-+++.|+.++-...+..++.+.+.+|+
T Consensus 40 ~l~v~~~~~~~P~~~~~~~~~~g~~~G~~~dl~~~~~~~~g~~~~~~~~~~~~~~~~l~~g~ 101 (269)
T 4i62_A 40 KLVVALNPDFAPFEYQKVVDGKNQIVGSDIELAKAIATELGVELELSPMSFDNVLASVQSGK 101 (269)
T ss_dssp EEEEEECSCBTTTBEEEEETTEEEEESHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHTTS
T ss_pred eEEEEecCCCCCceeecccCCCCcEeeecHHHHHHHHHHHCCceEEEEcCHHHHHHHHhCCC
Confidence 345566677666655 22211111222222223445679998888889999999999997
No 89
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=37.26 E-value=26 Score=26.67 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=39.0
Q ss_pred cccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCc
Q 029371 46 ITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNY 104 (194)
Q Consensus 46 ~tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~ 104 (194)
.++|++|++.+-.|..+.=...+-=|.-+=.-++++|+.++-...+..++...|.+|+.
T Consensus 7 l~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~ 65 (245)
T 3k4u_A 7 LRVGLEPGYLPFEMKDKKGNVIGFDVDLAREMAKAMGVKLKLVPTSWDGLIPGLVTEKF 65 (245)
T ss_dssp EEEEECTTSTTTCEEETTTEEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHTTSC
T ss_pred EEEEECCCcCCeeEECCCCCCccchHHHHHHHHHHhCCeEEEEEccHHHHHHHHhCCCc
Confidence 44566677777766643211122223334445677899988888999999999999973
No 90
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=37.04 E-value=79 Score=22.38 Aligned_cols=48 Identities=23% Similarity=0.044 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCC-cEEEEEEcCCCc
Q 029371 68 LVRVDMLFQKARSAGIKIECGSISGVEISLMILSGN-YIAIALVDQYKL 115 (194)
Q Consensus 68 ~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~-~~~IvLvd~~~L 115 (194)
...+..+-..+...+||+..-..|.+||-..+-... .-+++++|.++-
T Consensus 50 ~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~~~~~vaI~D~G~a 98 (104)
T 4a18_G 50 TVRKSEIEYYASLAQISIHHFVGSNVELGTACGKYHRCSTMAILDAGDS 98 (104)
T ss_dssp HHHHHHHHHHHHHHTCEEEECSSCHHHHHHHTTCSSCCSEEEEEECSSC
T ss_pred HHHHHHHHHHHHHcCCcEEEecCCHHHHHHHhCCccCEEEEEEeccchH
Confidence 344566667788899999655789999999886543 236899998853
No 91
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=36.19 E-value=25 Score=27.18 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=39.9
Q ss_pred cccCCCCCCCcchhhcccccch----hhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCc
Q 029371 46 ITLGANPNYSVETFYKEQLPTD----LVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNY 104 (194)
Q Consensus 46 ~tlG~np~y~~~~fY~~~~~~D----~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~ 104 (194)
.++|++|+|.+-+|+.. .+.+ +-=|+-+-+-|+++|+.++-...+.+++...|.+|+.
T Consensus 14 L~Vg~~~~~pP~~~~~~-~d~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~~~~l~~g~~ 75 (243)
T 4h5g_A 14 LVVATSPDYAPFEFQSL-VDGKNQVVGADIDMAQAIADELGVKLEILSMSFDNVLTSLQTGKA 75 (243)
T ss_dssp EEEEECCCBTTTBEEEE-ETTEEEEESHHHHHHHHHHHHHTSEEEEEECCGGGHHHHHHTTSC
T ss_pred EEEEECCCCCCcEeeec-cCCCCcEEEeHHHHHHHHHHHhCCceEEecccHHHHHHHHHcCCC
Confidence 45678888888877631 1111 1122333455788899998888999999999999974
No 92
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=35.44 E-value=42 Score=27.68 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=20.9
Q ss_pred CCceeHHHHHHHHhhcCcceeeee
Q 029371 22 TTSIWTVDLAYLLQKFNVGFSYFT 45 (194)
Q Consensus 22 ~~S~WTIDLaylL~~~gv~~~f~T 45 (194)
++++-|..|+.+|++-|.++.|+-
T Consensus 39 GKT~vt~gL~~~l~~~G~~V~~fK 62 (251)
T 3fgn_A 39 GKTVVCAALASAARQAGIDVAVCK 62 (251)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEe
Confidence 466788899999999999999985
No 93
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=32.88 E-value=23 Score=26.74 Aligned_cols=58 Identities=17% Similarity=0.122 Sum_probs=35.8
Q ss_pred ccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCc
Q 029371 47 TLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNY 104 (194)
Q Consensus 47 tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~ 104 (194)
++|+++++.+-.|..+.=...+-=|.-+=+-|+++|+.++-...+..++...|.+|+.
T Consensus 18 ~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~ 75 (239)
T 3kbr_A 18 RVATTGDYKPFSYRTEEGGYAGFDVDMAQRLAESLGAKLVVVPTSWPNLMRDFADDRF 75 (239)
T ss_dssp EEEECSEETTTEEECTTSCEESHHHHHHHHHHHHTTCEEEEEECCTTTHHHHHHTTCC
T ss_pred EEEECCCCCCeeEECCCCCEEeehHHHHHHHHHHHCCceEEEEeCHHHHHHHHHCCCc
Confidence 3445555555555432211112223334445677899988888899999999999973
No 94
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=32.78 E-value=22 Score=26.47 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=35.8
Q ss_pred ccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCcEE
Q 029371 47 TLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIA 106 (194)
Q Consensus 47 tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~~~ 106 (194)
++|+++++.+-.|..+.=...+-=+.-+-.-++++|+.++-...+..++...+.+|+.=+
T Consensus 14 ~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~ 73 (234)
T 3h7m_A 14 VVGGDRDYPPYEFIDQNGKPAGYNVELTRAIAEVMGMTVEFRLGAWSEMFSALKSGRVDV 73 (234)
T ss_dssp EEEEETEETTTEEECTTSCEESHHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHTTSSSE
T ss_pred EEEecCCCCCeEEECCCCCEeeeEHHHHHHHHHHcCCceEEEeCCHHHHHHHHhCCCeeE
Confidence 445555555554443221111222233334466679988888889999999999997433
No 95
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=32.49 E-value=25 Score=27.57 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=36.5
Q ss_pred ccCCCCCCCcchhhccc---ccchhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCc
Q 029371 47 TLGANPNYSVETFYKEQ---LPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNY 104 (194)
Q Consensus 47 tlG~np~y~~~~fY~~~---~~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~ 104 (194)
++|+++++.+-.|..+. =...+-=|.-+=+-++++|+.++-...+..++...+.+|+.
T Consensus 24 ~v~~~~~~pP~~~~~~~~~~g~~~G~~~dl~~~i~~~~g~~v~~~~~~~~~~~~~l~~G~~ 84 (271)
T 2iee_A 24 VVATSGTLYPTSYHDTDSGSDKLTGYEVEVVREAAKRLGLKVEFKEMGIDGMLTAVNSGQV 84 (271)
T ss_dssp EEEECSCBTTTBEEETTTTCCEEECHHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHTSS
T ss_pred EEEECCCCCCeeEeCCCCCCCCceeeHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCCCc
Confidence 34555666666665322 11112223333445667899988888899999999999973
No 96
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=32.44 E-value=23 Score=26.99 Aligned_cols=59 Identities=20% Similarity=0.243 Sum_probs=37.9
Q ss_pred cccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCc
Q 029371 46 ITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNY 104 (194)
Q Consensus 46 ~tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~ 104 (194)
.++|.++++.+-.|..+.=.-.+-=|.-+=+-|+++|+.++-...+..++...+.+|+.
T Consensus 7 l~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~ 65 (232)
T 3i6v_A 7 VRMGTEGAYPPYNFINDAGEVDGFERELGDELCKRAGLTCEWVKNDWDSIIPNLVSGNY 65 (232)
T ss_dssp EEEEECSEETTTEEECTTSCEESHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHTTSC
T ss_pred EEEEECCCCCCeeEECCCCCEeeehHHHHHHHHHHcCCceEEEECCHHHHHHHHHCCCC
Confidence 34566666666666543211122223334445667799988888899999999999974
No 97
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=31.54 E-value=1e+02 Score=22.07 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=33.9
Q ss_pred ccchhhHHHHHHHHHHHcCC-ceEeccccHHHHHHHHH----cCCcEEEEEEcCC
Q 029371 64 LPTDLVRVDMLFQKARSAGI-KIECGSISGVEISLMIL----SGNYIAIALVDQY 113 (194)
Q Consensus 64 ~~~D~~RV~~lF~~A~~~gi-~v~~rsvs~~eI~~~L~----~G~~~~IvLvd~~ 113 (194)
+.+|.+-+...-+.|+..=+ .......|.++|...|. +|+ |.+|+||..
T Consensus 8 istdtniissvqerakhnypgryirtatssqdirdiiksmkdngk-plvvfvnga 61 (112)
T 2lnd_A 8 ISTDTNIISSVQERAKHNYPGRYIRTATSSQDIRDIIKSMKDNGK-PLVVFVNGA 61 (112)
T ss_dssp ECSCHHHHHHHHHHHHHHSCTTTEEEECSHHHHHHHHHHHTTCCS-CEEEEECSC
T ss_pred EecCchHHHHHHHHhhcCCCCceeeeccchhhHHHHHHHHHhcCC-eEEEEecCc
Confidence 45666666666667776544 33466778888776663 587 999999976
No 98
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=31.24 E-value=28 Score=28.36 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=18.9
Q ss_pred ceEEEEEEeeCCCceEEEeCCCCC
Q 029371 137 GHYILICGYDANSDEFEIRDPASC 160 (194)
Q Consensus 137 GHYVVLcGYd~~~~~~~~~DPa~~ 160 (194)
|=.++|.|||.....+|.-||.-+
T Consensus 95 ~v~llvaG~D~~gp~Ly~idp~G~ 118 (234)
T 3unf_H 95 GASLVVGGVDLNGPQLYEVHPHGS 118 (234)
T ss_dssp CEEEEEEEEETTEEEEEEECTTSC
T ss_pred cEEEEEEEEeCCCCEEEEECCCCC
Confidence 335789999987668999999743
No 99
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=30.69 E-value=46 Score=25.96 Aligned_cols=62 Identities=11% Similarity=0.090 Sum_probs=37.5
Q ss_pred cccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceEeccc-cHHHHHHHHHcCCcEEE
Q 029371 46 ITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSI-SGVEISLMILSGNYIAI 107 (194)
Q Consensus 46 ~tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~~rsv-s~~eI~~~L~~G~~~~I 107 (194)
.++|+++++.+-+|+.+.=.-.+-=|.-+=.-|+++|+.++-... +..++...+.+|+.=+|
T Consensus 34 l~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~~l~~G~~D~~ 96 (267)
T 3mpk_A 34 VKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSGEADMA 96 (267)
T ss_dssp EEEEEETEETTTEECCTTCCCBSHHHHHHHHHHHHHCCEEEEEEESSHHHHHHHHHHTSCSEE
T ss_pred EEEEeCCCCCCeEEECCCCcEeeeHHHHHHHHHHHHCCeEEEEecCCHHHHHHHHHCCCccEE
Confidence 334455656555555332111222233344556778999887754 79999999999985443
No 100
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=30.45 E-value=6.6 Score=34.15 Aligned_cols=77 Identities=12% Similarity=0.094 Sum_probs=23.7
Q ss_pred eeccCCCCC------ChhHHHhhhcCCceeHHHHHHHHhhcCcceeeeecccCCCCCCCcchhhc-ccccchhhHHHHHH
Q 029371 3 LRTIGINNC------NIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYK-EQLPTDLVRVDMLF 75 (194)
Q Consensus 3 L~~~g~~~~------~~~~l~~~c~~~S~WTIDLaylL~~~gv~~~f~T~tlG~np~y~~~~fY~-~~~~~D~~RV~~lF 75 (194)
||.|||+-. .+..=..+|...-.=+-..|-||++||++...|-..+ ---|...+.|. +.|+.|+.-+...|
T Consensus 136 fq~Lgiptki~kG~I~I~~d~~v~k~G~~v~~~~A~lL~~l~i~p~~~~l~l--~~~~d~g~i~~~~~L~i~~e~~~~~~ 213 (312)
T 3u5i_q 136 FQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTV--VQVYDNGQVFPXXXXXXXXXXXXXXX 213 (312)
T ss_dssp ------------------------------------------------CCEE--EEEEESSCCCCSTTTSCCSSTTTHHH
T ss_pred HHHcCCCeEeeCCEEEEccceEEEeCCCCcCHHHHHHHHHcCcCcEEEEEEE--EEEecCCceecccccccccccccccc
Confidence 677888621 1223346777666667779999999999877665433 24555566665 46888888888899
Q ss_pred HHHHHc
Q 029371 76 QKARSA 81 (194)
Q Consensus 76 ~~A~~~ 81 (194)
++|...
T Consensus 214 ~~~~~~ 219 (312)
T 3u5i_q 214 XXXXXX 219 (312)
T ss_dssp HHHHTT
T ss_pred ccchhh
Confidence 888654
No 101
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=30.03 E-value=38 Score=25.80 Aligned_cols=60 Identities=13% Similarity=0.110 Sum_probs=37.1
Q ss_pred ecccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCc
Q 029371 45 TITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNY 104 (194)
Q Consensus 45 T~tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~ 104 (194)
+.++|.+|++.+-.|..+.=...+--+.-+=.-+++.|+.++-...+..++.+.+.+|+.
T Consensus 32 ~l~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~ 91 (268)
T 3qax_A 32 IWIVGTNATYPPFEYVDAQGEVVGFDIDLAKAISEKLGKQLEVREFAFDALILNLKKHRI 91 (268)
T ss_dssp EEEEEECSCBTTTBEECTTSCEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHHTSS
T ss_pred eEEEEECCCCCCceEECCCCCEEEEEHHHHHHHHHHhCCeEEEEecCHHHHHHHHhCCCc
Confidence 345566677666655432211112222233344567799888888899999999999973
No 102
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=29.87 E-value=24 Score=27.33 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=36.1
Q ss_pred ccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCc
Q 029371 47 TLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNY 104 (194)
Q Consensus 47 tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~ 104 (194)
++|+++++.+-.|..+.=...+-=|.-+-.-++++|+.++-...+..++...+.+|+.
T Consensus 24 ~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~ 81 (268)
T 3hv1_A 24 KIGFDATFVPMGYEEKDGSYIGFDIDLANAVFKLYGIDVEWQAIDWDMKETELKNGTI 81 (268)
T ss_dssp EEEECTEETTTEEECTTSCEECHHHHHHHHHHHTTTCEEEEEECCGGGHHHHHHHTSC
T ss_pred EEEECCCCCCceEECCCCCEEEehHHHHHHHHHHhCCcEEEEECCHHHHHHHHHCCCC
Confidence 3445555555555532211112222333445677899999888999999999999973
No 103
>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target 9257A, protein structure initiative; 2.00A {Caulobacter crescentus}
Probab=29.18 E-value=1.7e+02 Score=26.14 Aligned_cols=78 Identities=13% Similarity=0.089 Sum_probs=46.9
Q ss_pred HHHHHHHHhhcCcceeeeecccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCcEE
Q 029371 27 TVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIA 106 (194)
Q Consensus 27 TIDLaylL~~~gv~~~f~T~tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~~~ 106 (194)
.+||-. |++=||...|+|.-.+..+ .....|.+.++.=..++....+.+.+..-.+ .-..|.+||....++|+ ++
T Consensus 79 ~~dlpr-lr~Ggv~~q~~si~v~~~~--~~~~~~~~~~~~~l~qid~~~~~~~~~~~~~-~~~~t~~di~~~~~~Gk-ia 153 (417)
T 2rag_A 79 QVDLPR-MNQGGLDGGFFVVYIGQGE--LTEKGYTYARDYALHRTIEIREMLAANPDTF-EMALTSDDARRIAKAGK-KF 153 (417)
T ss_dssp CCCHHH-HHHTTCCEEEEEEECCCCC--SSHHHHHHHHHHHHHHHHHHHHHHHHCTTTE-EECSSHHHHHHHHHTTC-EE
T ss_pred cccHHH-HHhcCCcEEEEEEecCCcc--CCcchhhHHHHHHHHHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHcCC-EE
Confidence 344544 3456888889988665332 2233344444444455555666665543223 45678999999999998 66
Q ss_pred EEE
Q 029371 107 IAL 109 (194)
Q Consensus 107 IvL 109 (194)
++|
T Consensus 154 ~ll 156 (417)
T 2rag_A 154 AFV 156 (417)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 104
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=29.12 E-value=37 Score=24.97 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=33.7
Q ss_pred ccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCc
Q 029371 47 TLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNY 104 (194)
Q Consensus 47 tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~ 104 (194)
++|++|++.+-.|..+. .-.+-=+.-+=.-+++.|+.++-...+..++...+.+|+.
T Consensus 6 ~v~~~~~~~P~~~~~~g-~~~G~~~dl~~~~~~~~g~~~~~~~~~~~~~~~~l~~g~~ 62 (226)
T 1wdn_A 6 VVATDTAFVPFEFKQGD-LYVGFDVDLWAAIAKELKLDYELKPMDFSGIIPALQTKNV 62 (226)
T ss_dssp EEEEESSBTTTBEEETT-EEESHHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHTTSS
T ss_pred EEEECCCCCCeeEecCC-cEEEeeHHHHHHHHHHhCCEEEEEECCHHHHHHHHhCCCC
Confidence 45555666655544321 1111112222233455688888778899999999999974
No 105
>1dki_A Pyrogenic exotoxin B zymogen; cysteine protease, papain-like; 1.60A {Streptococcus pyogenes} SCOP: d.3.1.1 PDB: 1pvj_A*
Probab=28.60 E-value=86 Score=27.53 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=12.4
Q ss_pred cceEEEEEEeeCCC
Q 029371 136 TGHYILICGYDANS 149 (194)
Q Consensus 136 ~GHYVVLcGYd~~~ 149 (194)
.||--|+-||+...
T Consensus 311 gGHAfV~DGy~~~~ 324 (371)
T 1dki_A 311 GGHAFVIDGADGRN 324 (371)
T ss_dssp EEEEEEEEEECSSS
T ss_pred CceEEEECcccCCC
Confidence 79999999999754
No 106
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=28.51 E-value=78 Score=26.38 Aligned_cols=62 Identities=18% Similarity=0.197 Sum_probs=41.1
Q ss_pred HHHHHhhcCcceeeeecccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceE--eccccHHHHHHHHHc--CCcE
Q 029371 30 LAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIE--CGSISGVEISLMILS--GNYI 105 (194)
Q Consensus 30 LaylL~~~gv~~~f~T~tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~--~rsvs~~eI~~~L~~--G~~~ 105 (194)
..|+.++||++..... ..|..|+ -.++.++-+.+++.+|++. ....+- .+.+.|++ | .+
T Consensus 200 f~Yf~~~yGl~~~~~~-~~~~eps--------------~~~l~~l~~~ik~~~v~~If~e~~~~~-~~~~~ia~~~g-~~ 262 (291)
T 1pq4_A 200 WAYFARDYNLVQIPIE-VEGQEPS--------------AQELKQLIDTAKENNLTMVFGETQFST-KSSEAIAAEIG-AG 262 (291)
T ss_dssp CHHHHHHTTCEEEESC-BTTBCCC--------------HHHHHHHHHHHHTTTCCEEEEETTSCC-HHHHHHHHHHT-CE
T ss_pred hHHHHHHCCCEEeecc-cCCCCCC--------------HHHHHHHHHHHHHcCCCEEEEeCCCCh-HHHHHHHHHcC-Ce
Confidence 5699999999976543 3455565 7889999999999999632 334433 33444543 5 35
Q ss_pred EEE
Q 029371 106 AIA 108 (194)
Q Consensus 106 ~Iv 108 (194)
++.
T Consensus 263 v~~ 265 (291)
T 1pq4_A 263 VEL 265 (291)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 107
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=27.35 E-value=1.1e+02 Score=24.77 Aligned_cols=50 Identities=16% Similarity=0.290 Sum_probs=35.1
Q ss_pred CCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceE-eccccHHHHHHHHHcCCc
Q 029371 49 GANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIE-CGSISGVEISLMILSGNY 104 (194)
Q Consensus 49 G~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~-~rsvs~~eI~~~L~~G~~ 104 (194)
++||.+..+.|- +.-..+|.++-+... +++|+ ...++.+.+.+.+..|--
T Consensus 146 sV~pGf~gq~f~----~~~l~ki~~lr~~~~--~~~I~VdGGI~~~ti~~~~~aGAd 196 (227)
T 1tqx_A 146 TVEPGFGGQSFM----HDMMGKVSFLRKKYK--NLNIQVDGGLNIETTEISASHGAN 196 (227)
T ss_dssp SSCTTCSSCCCC----GGGHHHHHHHHHHCT--TCEEEEESSCCHHHHHHHHHHTCC
T ss_pred eeccCCCCcccc----hHHHHHHHHHHHhcc--CCeEEEECCCCHHHHHHHHHcCCC
Confidence 489999988764 334445555444332 66665 899999999999998853
No 108
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=27.27 E-value=22 Score=30.85 Aligned_cols=62 Identities=15% Similarity=0.075 Sum_probs=43.3
Q ss_pred HhhhcCCceeHHHHHHHHhhcCcceeeeecccCCCCCCCcchhhc-ccccchhhHHHHHHHHHHH
Q 029371 17 AEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYK-EQLPTDLVRVDMLFQKARS 80 (194)
Q Consensus 17 ~~~c~~~S~WTIDLaylL~~~gv~~~f~T~tlG~np~y~~~~fY~-~~~~~D~~RV~~lF~~A~~ 80 (194)
..+|...-.=+-..|-||+.||++...|-..+- --|...+.|. +.|+.|+.-+...|++|-.
T Consensus 161 ~~v~k~G~~v~~~~A~lL~~l~i~p~~f~l~l~--~~~d~g~i~~~~vL~i~~e~~~~~~~~~~~ 223 (319)
T 3iz5_s 161 VELIKKGDKVGSSESALLAKLGIRPFSYGLVIT--NVYDSGSVFSPEVLDLTEDDLMEKFASGVS 223 (319)
T ss_dssp EEEECTTSBCCHHHHHHHHHHTCCCEEESCEEE--EEEETTEEECHHHHSCCCHHHHHHHHHHHH
T ss_pred eEEEecCCCcCHHHHHHHHHhCCCceEEEeeee--EEEeCCceeCHHHcCCCHHHHHHHHHHHHH
Confidence 346666666677899999999999877765443 5566667775 4577777766666666543
No 109
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=27.23 E-value=1.4e+02 Score=24.66 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=36.9
Q ss_pred HHHHHhhcCcceeeeecccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceE--eccccHHHHHHHHHc
Q 029371 30 LAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIE--CGSISGVEISLMILS 101 (194)
Q Consensus 30 LaylL~~~gv~~~f~T~tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~--~rsvs~~eI~~~L~~ 101 (194)
..|+.++||++..-. .|++|.-... -.++.++-+.+++.+|.+. ....+- .+.+.|++
T Consensus 189 f~Yf~~~yGl~~~~~---~~~~~~~eps----------~~~l~~l~~~ik~~~v~~if~e~~~~~-~~~~~la~ 248 (286)
T 3gi1_A 189 FSYLAKRFGLKQLGI---SGISPEQEPS----------PRQLKEIQDFVKEYNVKTIFAEDNVNP-KIAHAIAK 248 (286)
T ss_dssp CHHHHHHTTCEEEEE---ECSCC---CC----------HHHHHHHHHHHHHTTCCEEEECTTSCT-HHHHHHHH
T ss_pred hHHHHHHCCCeEeec---cccCCCCCCC----------HHHHHHHHHHHHHcCCCEEEEeCCCCh-HHHHHHHH
Confidence 569999999997643 2344432222 7889999999999999632 333333 34445554
No 110
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=27.10 E-value=67 Score=24.91 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=34.1
Q ss_pred cccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCc
Q 029371 46 ITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNY 104 (194)
Q Consensus 46 ~tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~ 104 (194)
.++|++|++.+-.|..+. ...+-=+.-+=.-+++.|+.++-...+..++...+.+|+.
T Consensus 44 l~v~~~~~~~P~~~~~~g-~~~G~~~dl~~~i~~~~g~~v~~~~~~~~~~~~~l~~G~~ 101 (272)
T 2pvu_A 44 VVVGTDAAFAPFEYMQKG-KIVGFDVDLLDAVMKAAGLDYELKNIGWDPLFASLQSKEV 101 (272)
T ss_dssp EEEEECCCBTTTBEEETT-EEESHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHTSS
T ss_pred EEEEECCCCCCeEEecCC-eEEEEHHHHHHHHHHHhCCceEEEECCHHHHHHHHhCCCC
Confidence 445566666655554211 1111111222223456689888888889999999999973
No 111
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=26.79 E-value=1.4e+02 Score=24.58 Aligned_cols=58 Identities=12% Similarity=0.232 Sum_probs=38.3
Q ss_pred HHHHHhhcCcceeeeecccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCce--EeccccHHHHHHHHHc
Q 029371 30 LAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKI--ECGSISGVEISLMILS 101 (194)
Q Consensus 30 LaylL~~~gv~~~f~T~tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v--~~rsvs~~eI~~~L~~ 101 (194)
..|+.++||++..... |++|.-... -.++.++-+.+++.||++ .....+ ..+.+.|++
T Consensus 187 f~Yf~~~yGl~~~~~~---~~~~~~eps----------~~~l~~l~~~ik~~~v~~if~e~~~~-~~~~~~ia~ 246 (284)
T 3cx3_A 187 FSYLAKRFGLNQLGIA---GISPEQEPS----------PRQLTEIQEFVKTYKVKTIFTESNAS-SKVAETLVK 246 (284)
T ss_dssp CHHHHHHTTCCEEEEE---CSSTTCCCC----------SHHHHHHHHHHHHTTCCCEEECSSSC-CHHHHHHHS
T ss_pred hHHHHHHcCCEEeecc---CCCCCCCCC----------HHHHHHHHHHHHHcCCCEEEEeCCCC-cHHHHHHHH
Confidence 5699999999976543 344332222 788899999999999863 233333 344555654
No 112
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=26.27 E-value=38 Score=28.15 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=18.8
Q ss_pred eEEEEEEeeCCCceEEEeCCCCC
Q 029371 138 HYILICGYDANSDEFEIRDPASC 160 (194)
Q Consensus 138 HYVVLcGYd~~~~~~~~~DPa~~ 160 (194)
=.++|.|||.....+|..||.-+
T Consensus 125 v~llvaG~D~~Gp~Ly~iDp~G~ 147 (261)
T 3nzj_H 125 AYLIVAGVDPTGSHLFSIHAHGS 147 (261)
T ss_dssp EEEEEEEEETTEEEEEEECTTSC
T ss_pred EEEEEEEEeCCCCEEEEECCCcc
Confidence 35789999987678999999854
No 113
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=26.05 E-value=1e+02 Score=20.81 Aligned_cols=42 Identities=24% Similarity=0.030 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCceEeccccHHHHHHHHHcCCcEEEEEEcCCC
Q 029371 72 DMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYK 114 (194)
Q Consensus 72 ~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~~~IvLvd~~~ 114 (194)
..+-+.-++.|..+....-+.++..+.+.+.+ |-++++|..+
T Consensus 23 ~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~-~dlii~d~~~ 64 (140)
T 3cg0_A 23 ATLRIQLESLGYDVLGVFDNGEEAVRCAPDLR-PDIALVDIML 64 (140)
T ss_dssp HHHHHHHHHHTCEEEEEESSHHHHHHHHHHHC-CSEEEEESSC
T ss_pred HHHHHHHHHCCCeeEEEECCHHHHHHHHHhCC-CCEEEEecCC
Confidence 33444444568887655778888888888775 8899999764
No 114
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=25.97 E-value=46 Score=25.39 Aligned_cols=58 Identities=12% Similarity=0.128 Sum_probs=36.4
Q ss_pred cccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCc
Q 029371 46 ITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNY 104 (194)
Q Consensus 46 ~tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~ 104 (194)
.++|+++++.+-.|. +.=...+-=|.-+=.-++++|+.++-...+..++...+.+|+.
T Consensus 26 l~v~~~~~~~P~~~~-~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~ 83 (249)
T 4f3p_A 26 LVVGTDTSFMPFEFK-QGDKYVGFDLDLWAEIAKGAGWTYKIQPMDFAGLIPALQTQNI 83 (249)
T ss_dssp EEEEEESCBTTTBEE-ETTEEESHHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHTTSC
T ss_pred EEEEeCCCCCCeEEe-cCCeEEEEhHHHHHHHHHHcCCceEEEecCHHHHHHHHHCCCC
Confidence 444555666666655 2211112222333344566799988888899999999999973
No 115
>3bv8_A Tetrahydrodipicolinate acetyltransferase; PFAM08503, structural genomics, PSI-2, PR structure initiative; 1.75A {Staphylococcus aureus subsp}
Probab=25.13 E-value=1.5e+02 Score=21.07 Aligned_cols=30 Identities=10% Similarity=-0.063 Sum_probs=23.8
Q ss_pred cccHHHHHHHHHc--CCcEEEEEEcCCCcccc
Q 029371 89 SISGVEISLMILS--GNYIAIALVDQYKLSHS 118 (194)
Q Consensus 89 svs~~eI~~~L~~--G~~~~IvLvd~~~L~~~ 118 (194)
....+||..+|.+ .+.|+=|.|+..+..++
T Consensus 3 ~mda~eII~yI~~skKkTPVKvYvkG~l~~~~ 34 (87)
T 3bv8_A 3 ALTAEEIIQYISDAKKFTPIKVYLNGNFEGIT 34 (87)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEEEEEECCTTCC
T ss_pred CCCHHHHHHHHHhCCCCCcEEEEEecccccCc
Confidence 3567899999964 77899999999865543
No 116
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=24.99 E-value=1.6e+02 Score=19.84 Aligned_cols=41 Identities=17% Similarity=0.057 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCceEeccccHHHHHHHHHcCCcEEEEEEcCCC
Q 029371 72 DMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYK 114 (194)
Q Consensus 72 ~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~~~IvLvd~~~ 114 (194)
..+-+.-++.|..|. ..-+.++..+.+.+.+ |-++++|..+
T Consensus 17 ~~l~~~L~~~g~~v~-~~~~~~~a~~~l~~~~-~dlvi~d~~~ 57 (140)
T 2qr3_A 17 TAVQLLLKNHFSKVI-TLSSPVSLSTVLREEN-PEVVLLDMNF 57 (140)
T ss_dssp HHHHHHHTTTSSEEE-EECCHHHHHHHHHHSC-EEEEEEETTT
T ss_pred HHHHHHHHhCCcEEE-EeCCHHHHHHHHHcCC-CCEEEEeCCc
Confidence 333344445677775 5668888888888885 9999999874
No 117
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=24.52 E-value=37 Score=26.97 Aligned_cols=60 Identities=18% Similarity=0.224 Sum_probs=34.6
Q ss_pred ecccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCc
Q 029371 45 TITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNY 104 (194)
Q Consensus 45 T~tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~ 104 (194)
+.++|++++|.+-.|..+.=...+.=+.-+=.-+++.|+.++-...+..++...|.+|+.
T Consensus 58 ~l~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~G~~v~~~~~~~~~~~~~l~~G~~ 117 (283)
T 2yln_A 58 TVTVGTEGTYAPFTYHDKDGKLTGYDVEVTRAVAEKLGVKVEFKETQWDSMMAGLKAGRF 117 (283)
T ss_dssp EEEEEECSEETTTEEECTTSCEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHHTSC
T ss_pred eEEEEECCCCCCeeEECCCCCEeeehHHHHHHHHHHcCCceEEEECCHHHHHHHHHCCCc
Confidence 345566666666555532111111111111222345699888888889999999999973
No 118
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=24.33 E-value=84 Score=27.59 Aligned_cols=55 Identities=27% Similarity=0.441 Sum_probs=35.2
Q ss_pred HHHHHhhcCcceeeeeccc---CCCCCCCcchhhc--ccccchhhHHHHHHHHHHHcCCceE
Q 029371 30 LAYLLQKFNVGFSYFTITL---GANPNYSVETFYK--EQLPTDLVRVDMLFQKARSAGIKIE 86 (194)
Q Consensus 30 LaylL~~~gv~~~f~T~tl---G~np~y~~~~fY~--~~~~~D~~RV~~lF~~A~~~gi~v~ 86 (194)
|-| ||.+||.+.+.+.-. +.|-.|....||. ..|-+.+ =..+|-++|++.||.|.
T Consensus 38 LdY-Lk~LGvt~I~L~Pi~~~~~~~~GYd~~dy~~vdp~~Gt~~-dfk~Lv~~aH~~Gi~Vi 97 (549)
T 4aie_A 38 LDY-LEKLGIDAIWLSPVYQSPGVDNGYDISDYEAIDPQYGTMA-DMDELISKAKEHHIKIV 97 (549)
T ss_dssp HHH-HHHHTCSEEEECCCEECCCTTTTSSCSEEEEECTTTCCHH-HHHHHHHHHHHTTCEEE
T ss_pred hHH-HHHCCCCEEEeCCCcCCCCCCCCcCccCCCCcCcccCCHH-HHHHHHHHHHHCCCEEE
Confidence 445 588999988776522 3455677777764 2233322 25778888888888653
No 119
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=24.28 E-value=1.1e+02 Score=22.51 Aligned_cols=29 Identities=17% Similarity=-0.058 Sum_probs=24.1
Q ss_pred HHHHHcCCceEeccc-cHHHHHHHHHcCCc
Q 029371 76 QKARSAGIKIECGSI-SGVEISLMILSGNY 104 (194)
Q Consensus 76 ~~A~~~gi~v~~rsv-s~~eI~~~L~~G~~ 104 (194)
.-++++|+.++-... +..++.+.+.+|+.
T Consensus 37 ~i~~~~g~~~~~~~~~~~~~~~~~l~~g~~ 66 (233)
T 1ii5_A 37 AVAESQKWNSEYVRQNSISAGITAVAEGEL 66 (233)
T ss_dssp HHHHHHTCCEEEEECSCHHHHHHHHHTTSC
T ss_pred HHHHHcCCcEEEEEeCCHHHHHHHHHCCCc
Confidence 445667999988888 99999999999974
No 120
>3bb7_A Interpain A; cysteine protease, zymogen activation, bacterial odontopatho hydrolase; 1.50A {Prevotella intermedia} PDB: 3bba_A
Probab=24.15 E-value=72 Score=27.50 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=13.0
Q ss_pred CcceEEEEEEeeCCC
Q 029371 135 YTGHYILICGYDANS 149 (194)
Q Consensus 135 Y~GHYVVLcGYd~~~ 149 (194)
-.||--|+-||+.+.
T Consensus 264 ~~GHafV~DGY~~~~ 278 (321)
T 3bb7_A 264 DAGHAFVIDGYNKAG 278 (321)
T ss_dssp CCCEEEEEEEECTTS
T ss_pred CCceEEEEccccCCC
Confidence 579999999999763
No 121
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=23.86 E-value=34 Score=27.59 Aligned_cols=57 Identities=18% Similarity=0.081 Sum_probs=33.0
Q ss_pred ccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceEeccc-----------------cHHHHHHHHHcCC
Q 029371 47 TLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSI-----------------SGVEISLMILSGN 103 (194)
Q Consensus 47 tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~~rsv-----------------s~~eI~~~L~~G~ 103 (194)
+.|.|+.|.+-+|+...=.-.+-=|+-+-+-|+++|+.++-..+ +...+...|.+|+
T Consensus 44 ~vg~~~~~~P~~~~~~~g~~~G~~vDll~~ia~~lg~~~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~g~ 117 (292)
T 1pb7_A 44 CTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQ 117 (292)
T ss_dssp EEEEC--------CEEEEEEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHHHHHHTS
T ss_pred ecccCCCCCCccccccccCcceeHHHHHHHHHHHcCceEEEEEecCCcccccccccccccCcHHHHHHHHHcCC
Confidence 45678888777777543222344445566778888998876654 6788999999997
No 122
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=23.74 E-value=1.5e+02 Score=19.73 Aligned_cols=47 Identities=13% Similarity=0.073 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCcEEEEEEcCCCc
Q 029371 67 DLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKL 115 (194)
Q Consensus 67 D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~~~IvLvd~~~L 115 (194)
|......+-+.-++.|..|. ..-+.++..+.+.+.+ |-++++|..+-
T Consensus 15 ~~~~~~~l~~~L~~~g~~v~-~~~~~~~a~~~l~~~~-~dlii~d~~l~ 61 (132)
T 3lte_A 15 DQAMAAAIERVLKRDHWQVE-IAHNGFDAGIKLSTFE-PAIMTLDLSMP 61 (132)
T ss_dssp CHHHHHHHHHHHHHTTCEEE-EESSHHHHHHHHHHTC-CSEEEEESCBT
T ss_pred CHHHHHHHHHHHHHCCcEEE-EeCCHHHHHHHHHhcC-CCEEEEecCCC
Confidence 33333333344445777775 5667888888888875 88999998743
No 123
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=23.49 E-value=1.8e+02 Score=19.70 Aligned_cols=48 Identities=19% Similarity=0.086 Sum_probs=32.5
Q ss_pred chhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCcEEEEEEcCCCc
Q 029371 66 TDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKL 115 (194)
Q Consensus 66 ~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~~~IvLvd~~~L 115 (194)
.|......+-+.-+..|..|. ..-+.++..+.+.+.+ |-++++|..+-
T Consensus 15 d~~~~~~~l~~~L~~~g~~v~-~~~~~~~a~~~l~~~~-~dlii~d~~l~ 62 (142)
T 3cg4_A 15 DDAHVRIAVKTILSDAGFHII-SADSGGQCIDLLKKGF-SGVVLLDIMMP 62 (142)
T ss_dssp SCHHHHHHHHHHHHHTTCEEE-EESSHHHHHHHHHTCC-CEEEEEESCCS
T ss_pred CCHHHHHHHHHHHHHCCeEEE-EeCCHHHHHHHHHhcC-CCEEEEeCCCC
Confidence 334333444444455688764 5668888888898885 89999998743
No 124
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=23.04 E-value=1.7e+02 Score=19.61 Aligned_cols=43 Identities=12% Similarity=0.019 Sum_probs=29.6
Q ss_pred HHHHHHHHH-cCCceEeccccHHHHHHHHHcCCcEEEEEEcCCCc
Q 029371 72 DMLFQKARS-AGIKIECGSISGVEISLMILSGNYIAIALVDQYKL 115 (194)
Q Consensus 72 ~~lF~~A~~-~gi~v~~rsvs~~eI~~~L~~G~~~~IvLvd~~~L 115 (194)
..+-+.-.+ .|..+....-+.++..+.+.+.+ |-++++|..+-
T Consensus 22 ~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~-~dlii~d~~l~ 65 (143)
T 3cnb_A 22 DMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVK-PDVVMLDLMMV 65 (143)
T ss_dssp HHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTC-CSEEEEETTCT
T ss_pred HHHHHHHHhccCccEEEEECCHHHHHHHHHhcC-CCEEEEecccC
Confidence 333333444 68873356678888888888875 88999998753
No 125
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A*
Probab=22.69 E-value=59 Score=26.53 Aligned_cols=26 Identities=8% Similarity=-0.124 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCCceEeccccHHHHHH
Q 029371 72 DMLFQKARSAGIKIECGSISGVEISL 97 (194)
Q Consensus 72 ~~lF~~A~~~gi~v~~rsvs~~eI~~ 97 (194)
..+.+.|++.|++|+++.++.+|+.+
T Consensus 203 ~~ll~~a~~~g~~v~e~~i~~~eL~~ 228 (269)
T 1i2k_A 203 QFCIRLLAQSSYQLVEVQASLEESLQ 228 (269)
T ss_dssp HHHHHHHHHSSSEEEEECCBHHHHHT
T ss_pred HHHHHHHHHcCCeEEEEECCHHHHhh
Confidence 66778899999999999999999976
No 126
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=22.61 E-value=94 Score=22.65 Aligned_cols=45 Identities=9% Similarity=0.178 Sum_probs=33.4
Q ss_pred CCcceEEEEEEeeCCCceEEEeCCCCCCceeeeChHHHHHHHhhCCCCccEEEEEcC
Q 029371 134 GYTGHYILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDLLLISLE 190 (194)
Q Consensus 134 ~Y~GHYVVLcGYd~~~~~~~~~DPa~~~~~~~~s~~~~e~AR~s~GTDeDil~I~~~ 190 (194)
+|.|..+||.=| |+.....|......|.+....| .+=.+|.|+.+
T Consensus 40 ~~~gk~vvl~f~-----------~~~~c~~C~~e~~~l~~~~~~~-~~v~vv~Is~d 84 (165)
T 1q98_A 40 DFASKRKVLNIF-----------PSIDTGVCATSVRKFNQQAAKL-SNTIVLCISAD 84 (165)
T ss_dssp GGTTSEEEEEEC-----------SCSCSSCCCHHHHHHHHHHHHS-TTEEEEEEESS
T ss_pred HhCCCeEEEEEE-----------CCCCCCccHHHHHHHHHHHHHc-CCCEEEEEeCC
Confidence 478888777644 4555688988899999999998 44567777654
No 127
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=22.49 E-value=1.9e+02 Score=23.73 Aligned_cols=57 Identities=7% Similarity=0.028 Sum_probs=38.1
Q ss_pred HHHHHhhcCcceeeee-cccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceE--eccccHHHHHHHHHc
Q 029371 30 LAYLLQKFNVGFSYFT-ITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIE--CGSISGVEISLMILS 101 (194)
Q Consensus 30 LaylL~~~gv~~~f~T-~tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~--~rsvs~~eI~~~L~~ 101 (194)
..|+.++||++..... ..-|..|+ -.++.++-+.+++.||.+. ....+ ..+.+.|++
T Consensus 184 f~Yf~~~yGl~~~~~~~~~~~~eps--------------~~~l~~l~~~ik~~~v~~if~e~~~~-~~~~~~ia~ 243 (284)
T 2prs_A 184 YGYFEKQFGLTPLGHFTVNPEIQPG--------------AQRLHEIRTQLVEQKATCVFAEPQFR-PAVVESVAR 243 (284)
T ss_dssp CHHHHHHHTCCCCEEEESSTTSCCC--------------HHHHHHHHHHHHHTTCCEEEECTTSC-SHHHHHHTT
T ss_pred HHHHHHHCCCeEeEeeccCCCCCCC--------------HHHHHHHHHHHHHcCCCEEEEeCCCC-hHHHHHHHH
Confidence 5699999999866532 22234454 7889999999999999743 33333 344455554
No 128
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=22.31 E-value=48 Score=24.35 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=33.9
Q ss_pred CcceEEEEEEeeCCCceEEEeCCCCCCceee-eChHHHHHHHhhCC-CCcc-EEEEEcCC
Q 029371 135 YTGHYILICGYDANSDEFEIRDPASCRKREK-VTLKCLEEARKSFG-TDED-LLLISLEK 191 (194)
Q Consensus 135 Y~GHYVVLcGYd~~~~~~~~~DPa~~~~~~~-~s~~~~e~AR~s~G-TDeD-il~I~~~~ 191 (194)
|.|..|||.-| |+.....|. .....|.+....|+ .+-. ++.|+.+.
T Consensus 33 ~~gk~vvl~f~-----------~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~ 81 (162)
T 1tp9_A 33 VAGKKVILFGV-----------PGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVND 81 (162)
T ss_dssp HTTSEEEEEEE-----------SCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred hCCCcEEEEEe-----------CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Confidence 78888888776 566678998 78888888877664 2336 88888653
No 129
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.24 E-value=15 Score=32.12 Aligned_cols=63 Identities=19% Similarity=0.114 Sum_probs=41.7
Q ss_pred HhhhcCCceeHHHHHHHHhhcCcceeeeecccCCCCCCCcchhhc-ccccchhhHHHHHHHHHHHc
Q 029371 17 AEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYK-EQLPTDLVRVDMLFQKARSA 81 (194)
Q Consensus 17 ~~~c~~~S~WTIDLaylL~~~gv~~~f~T~tlG~np~y~~~~fY~-~~~~~D~~RV~~lF~~A~~~ 81 (194)
..+|...-.=+-..|-||++||++...|-..+ ---|...+.|. +.|+.|+.-+...|++|...
T Consensus 160 ~~v~k~G~~v~~~~A~lL~~l~i~p~~~~l~l--~~~~~~g~i~~~~~L~i~~e~~~~~~~~a~~~ 223 (339)
T 3j21_k 160 TVVLKAGEEITPELANILNALGIQPLEVGLDL--LAVYEDGIIYTPDVLAIDESEYINMLQKAYMH 223 (339)
T ss_dssp EEEECTTSBCCHHHHHHHHHHTCCCSCCSCEE--EEEEETTEEECHHHHCCCHHHHHHHC------
T ss_pred eEEEecCCCcCHHHHHHHHHcCCCcEEeeeeE--EEEEeCCcEecHHhCCCCHHHHHHHHHHHHHH
Confidence 34666666667789999999999886665433 24566666665 56899998888888887654
No 130
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=22.08 E-value=1.3e+02 Score=21.25 Aligned_cols=51 Identities=22% Similarity=0.160 Sum_probs=35.0
Q ss_pred ccchhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcC--CcEEEEEEcCCCc
Q 029371 64 LPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSG--NYIAIALVDQYKL 115 (194)
Q Consensus 64 ~~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G--~~~~IvLvd~~~L 115 (194)
.+.|......+-+.-++.|..+.....+.++..+.+.+. + |-++++|..+-
T Consensus 42 vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~-~dliilD~~l~ 94 (157)
T 3hzh_A 42 VDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPN-IDIVTLXITMP 94 (157)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG-CCEEEECSSCS
T ss_pred EeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCC-CCEEEEeccCC
Confidence 444444444444555667888765778888988888765 4 78999998743
No 131
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=21.99 E-value=2e+02 Score=21.18 Aligned_cols=48 Identities=15% Similarity=0.014 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCcE-EEEEEcCCCc
Q 029371 68 LVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYI-AIALVDQYKL 115 (194)
Q Consensus 68 ~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~~-~IvLvd~~~L 115 (194)
++++..+-..+...+++|.....|.+||-..+-..... +++++|.++-
T Consensus 55 ~~~~~ki~~~~~~~~~~V~~~~~sk~eLG~A~Gk~~~v~~vaI~D~G~a 103 (125)
T 3vi6_A 55 ALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDS 103 (125)
T ss_dssp HHHHHHHHHHHHHTTCEEEECSSCHHHHHHHTTCSSCCCEEEEEECTTC
T ss_pred HHHHHHHHHHHHHhCCCcEEEcCCHHHHHHHhCCcccEEEEEEeCchhH
Confidence 44555555566777777655688999999988664334 6899999954
No 132
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=21.61 E-value=1.1e+02 Score=22.24 Aligned_cols=47 Identities=13% Similarity=0.012 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcC-CcEEEEEEcCCC
Q 029371 68 LVRVDMLFQKARSAGIKIECGSISGVEISLMILSG-NYIAIALVDQYK 114 (194)
Q Consensus 68 ~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G-~~~~IvLvd~~~ 114 (194)
.+++..+-..|...+||+..-.-|..||-..+-.. +.-+++++|.+.
T Consensus 54 ~~~~~~i~~~c~~~~ipv~~~~~s~~eLG~A~Gk~~~v~~vaI~D~G~ 101 (112)
T 3iz5_f 54 PLRKSEIETYAMLAKISVHHFHGNNVDLGTACGKYYRVCCLSILDPGD 101 (112)
T ss_dssp HHHHHHHHHHHHHTTCCEECCCCTTCTHHHHHCTTCSSCEEEEECCSC
T ss_pred HHHHHHHHHHHHHcCCcEEEeCCCHHHHHHHhCCccceEEEEEeccch
Confidence 56778888899999999976667899998887543 224588899884
No 133
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=21.24 E-value=1.8e+02 Score=19.65 Aligned_cols=48 Identities=15% Similarity=-0.047 Sum_probs=32.4
Q ss_pred cchhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCcEEEEEEcCCC
Q 029371 65 PTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYK 114 (194)
Q Consensus 65 ~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~~~IvLvd~~~ 114 (194)
+.|......+-+.-++.|..| ...-+.++..+.+.+.+ |-++++|..+
T Consensus 13 dd~~~~~~~l~~~l~~~g~~v-~~~~~~~~a~~~l~~~~-~dlvi~d~~l 60 (140)
T 3grc_A 13 EDDPDIARLLNLMLEKGGFDS-DMVHSAAQALEQVARRP-YAAMTVDLNL 60 (140)
T ss_dssp CSCHHHHHHHHHHHHHTTCEE-EEECSHHHHHHHHHHSC-CSEEEECSCC
T ss_pred cCCHHHHHHHHHHHHHCCCeE-EEECCHHHHHHHHHhCC-CCEEEEeCCC
Confidence 344444444444455678876 44568888888888875 8899999874
No 134
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=20.79 E-value=1.5e+02 Score=18.81 Aligned_cols=46 Identities=11% Similarity=-0.009 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCcEEEEEEcCCC
Q 029371 67 DLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYK 114 (194)
Q Consensus 67 D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~~~IvLvd~~~ 114 (194)
|......+-+.-+..|..+. ...+.++..+.+.+.+ |-++++|...
T Consensus 10 ~~~~~~~l~~~l~~~g~~v~-~~~~~~~~~~~l~~~~-~dlii~d~~~ 55 (119)
T 2j48_A 10 EDEAATVVCEMLTAAGFKVI-WLVDGSTALDQLDLLQ-PIVILMAWPP 55 (119)
T ss_dssp CHHHHHHHHHHHHHTTCEEE-EESCHHHHHHHHHHHC-CSEEEEECST
T ss_pred CHHHHHHHHHHHHhCCcEEE-EecCHHHHHHHHHhcC-CCEEEEecCC
Confidence 33333444444456788775 4557888888887764 7888999764
No 135
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=20.77 E-value=2e+02 Score=19.45 Aligned_cols=33 Identities=9% Similarity=0.132 Sum_probs=25.6
Q ss_pred CCceEeccccHHHHHHHHHcCCcEEEEEEcCCCc
Q 029371 82 GIKIECGSISGVEISLMILSGNYIAIALVDQYKL 115 (194)
Q Consensus 82 gi~v~~rsvs~~eI~~~L~~G~~~~IvLvd~~~L 115 (194)
|..+....-+.++..+.+.+.+ |-++++|..+-
T Consensus 34 ~~~~v~~~~~~~~al~~l~~~~-~dlvi~d~~l~ 66 (143)
T 2qv0_A 34 QMEIVGSFDDGLDVLKFLQHNK-VDAIFLDINIP 66 (143)
T ss_dssp CCEEEEEESCHHHHHHHHHHCC-CSEEEECSSCS
T ss_pred CceEEEEeCCHHHHHHHHHhCC-CCEEEEecCCC
Confidence 6765556778888888888875 88999998743
No 136
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas aeruginosa} PDB: 2y4r_A* 2xpf_B*
Probab=20.76 E-value=68 Score=26.70 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCCceEeccccHHHHHHH
Q 029371 72 DMLFQKARSAGIKIECGSISGVEISLM 98 (194)
Q Consensus 72 ~~lF~~A~~~gi~v~~rsvs~~eI~~~ 98 (194)
..+.+.|++.|++|+++.++.+|+.+.
T Consensus 224 ~~vl~~a~~~G~~v~E~~i~~~eL~~a 250 (292)
T 2xpf_A 224 AELLERAEGIGVPLAIRDVSMAELATA 250 (292)
T ss_dssp HHHHHHHHHTTCCEEEECBCHHHHHTC
T ss_pred HHHHHHHHHcCCeEEEEeCCHHHHHhC
Confidence 567788999999999999999999763
No 137
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=20.74 E-value=2.1e+02 Score=19.50 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCCceEeccccHHHHHHHHHcCCcEEEEEEcCCC
Q 029371 72 DMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYK 114 (194)
Q Consensus 72 ~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~~~IvLvd~~~ 114 (194)
..+-+.-.+.|..|. ...+.++..+.+.++..|-++++|..+
T Consensus 19 ~~l~~~L~~~g~~v~-~~~~~~~a~~~l~~~~~~dlvi~D~~l 60 (140)
T 3h5i_A 19 KTIANILNKYGYTVE-IALTGEAAVEKVSGGWYPDLILMDIEL 60 (140)
T ss_dssp HHHHHHHHHTTCEEE-EESSHHHHHHHHHTTCCCSEEEEESSC
T ss_pred HHHHHHHHHcCCEEE-EecChHHHHHHHhcCCCCCEEEEeccC
Confidence 334344455688775 566788888888774358899999874
No 138
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.71 E-value=46 Score=23.35 Aligned_cols=47 Identities=17% Similarity=0.094 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCC-cEEEEEEcCCC
Q 029371 68 LVRVDMLFQKARSAGIKIECGSISGVEISLMILSGN-YIAIALVDQYK 114 (194)
Q Consensus 68 ~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~-~~~IvLvd~~~ 114 (194)
++.+..+-..++..+||+..-..|.+||-..+-... .-+++++|.++
T Consensus 43 ~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~~~~~vaI~d~g~ 90 (99)
T 3j21_Z 43 KEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPGE 90 (99)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECCCSCGGGGTTCSTTCSEEEEESSCSS
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCHHHHHHHHCCCCCEEEEEEEccch
Confidence 567788888899999997655578888877765542 34688888874
No 139
>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=20.65 E-value=3.2e+02 Score=24.25 Aligned_cols=81 Identities=16% Similarity=0.135 Sum_probs=46.2
Q ss_pred eHHHHHHHHhhcCcceeeeecccCCC-------CCCCcchhhcccccchhhHHHHHHHHHHHcCCceEeccccHHHHHHH
Q 029371 26 WTVDLAYLLQKFNVGFSYFTITLGAN-------PNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLM 98 (194)
Q Consensus 26 WTIDLaylL~~~gv~~~f~T~tlG~n-------p~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~ 98 (194)
-++||-.| ++=|+...|+++-.... |.-...+|+......-..++..+.+.+.+..-.+ .-..|.++|...
T Consensus 48 ~~vDlprl-r~Ggv~~qf~avyv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~-~l~~t~~di~~~ 125 (417)
T 3b40_A 48 GQLDLVKA-GRGRLSGAALAIFGWPEMWNGPNAPHKPTPGFVDEARHQQEIRYKILTGMVRDFPNQV-GIAYSPEDFRRL 125 (417)
T ss_dssp SSCCHHHH-HHHTCCEEEEEEECCCCCC-----CCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTTTE-EECSSHHHHHHH
T ss_pred CcccHHHH-HccCCcEEEEEEEccchhcccccccccccchhhhHHHHHHHHHHHHHHHHHHHCCCcE-EEeCCHHHHHHH
Confidence 45677765 45577777887755321 1111234443333333445555555555543333 446789999999
Q ss_pred HHcCCcEEEEE
Q 029371 99 ILSGNYIAIAL 109 (194)
Q Consensus 99 L~~G~~~~IvL 109 (194)
..+|+ .+++|
T Consensus 126 ~~~Gk-ia~~l 135 (417)
T 3b40_A 126 AMEGK-FAIVM 135 (417)
T ss_dssp HHTTC-EEEEE
T ss_pred HHcCC-EEEEE
Confidence 99998 55554
No 140
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Probab=20.61 E-value=69 Score=26.57 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCCceEeccccHHHHHH
Q 029371 72 DMLFQKARSAGIKIECGSISGVEISL 97 (194)
Q Consensus 72 ~~lF~~A~~~gi~v~~rsvs~~eI~~ 97 (194)
..+.+.|++.|++|+++.++.+|+.+
T Consensus 206 ~~ll~~a~~~g~~v~E~~i~~~dL~~ 231 (285)
T 3csw_A 206 ENVIKLAKSLEIPVEERVVWVWELFE 231 (285)
T ss_dssp HHHHHHHHHTTCCEEEECCBHHHHHT
T ss_pred HHHHHHHHHCCCeEEEEeCCHHHHhh
Confidence 56778899999999999999999876
No 141
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=20.53 E-value=88 Score=23.30 Aligned_cols=57 Identities=5% Similarity=-0.014 Sum_probs=36.3
Q ss_pred cccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcC-CceEeccccHHHHHHHHHcCC
Q 029371 46 ITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAG-IKIECGSISGVEISLMILSGN 103 (194)
Q Consensus 46 ~tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~g-i~v~~rsvs~~eI~~~L~~G~ 103 (194)
.++|.++++.+-.| .+.=...+-=|.-+=.-++++| +.++-...+..++...+.+|+
T Consensus 10 l~v~~~~~~~P~~~-~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~~l~~g~ 67 (246)
T 4eq9_A 10 IIVATNGSPRPFIY-EENGELTGYEIEVVRAIFKDSDKYDVKFEKTEWSGVFAGLDADR 67 (246)
T ss_dssp EEEEECCCSTTTSE-EETTEEESHHHHHHHHHHTTCSSEEEEEEECCHHHHHHHHHTTS
T ss_pred EEEEeCCCcCCeEE-cCCCCCcccHHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhCCC
Confidence 44556666655554 2221111222333444567789 988888889999999999997
No 142
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A*
Probab=20.37 E-value=67 Score=26.59 Aligned_cols=26 Identities=12% Similarity=0.075 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCCceEeccccHHHHHH
Q 029371 72 DMLFQKARSAGIKIECGSISGVEISL 97 (194)
Q Consensus 72 ~~lF~~A~~~gi~v~~rsvs~~eI~~ 97 (194)
..+.+.|++.|++|+.+.++.+|+.+
T Consensus 207 ~~vl~~~~~~g~~v~e~~i~~~el~~ 232 (277)
T 3daa_A 207 DVVIACANEINMPVKEIPFTTHEALK 232 (277)
T ss_dssp HHHHHHHHHTTCCEECCCCBHHHHHT
T ss_pred HHHHHHHHHcCCeEEEEeCCHHHHHh
Confidence 66778899999999999999999976
No 143
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=20.35 E-value=1.1e+02 Score=25.05 Aligned_cols=51 Identities=14% Similarity=-0.044 Sum_probs=36.2
Q ss_pred CCCCCCCcchhhcccccchhhHHHHHHHHHHHc--CCceE-eccccHHHHHHHHH--cCC
Q 029371 49 GANPNYSVETFYKEQLPTDLVRVDMLFQKARSA--GIKIE-CGSISGVEISLMIL--SGN 103 (194)
Q Consensus 49 G~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~--gi~v~-~rsvs~~eI~~~L~--~G~ 103 (194)
++||.|..++| .+.-..+|.++-+...+. +++|+ ...++.+.+.+.+. .|-
T Consensus 156 sv~pgfggq~f----~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~~~~~~~~~~~~aGa 211 (237)
T 3cu2_A 156 TLDPRNGTKYP----SELILDRVIQVEKRLGNRRVEKLINIDGSMTLELAKYFKQGTHQI 211 (237)
T ss_dssp SEETTTTEECC----HHHHHHHHHHHHHHHGGGGGGCEEEEESSCCHHHHHHHHHSSSCC
T ss_pred eeccCcCCeec----ChhHHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHhCCCC
Confidence 46888888877 344556676666666443 45544 78999999999998 884
No 144
>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease BET lactamase, cilastatin, complex (hydrolase-inhibitor), hydro; HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7 PDB: 1itq_A*
Probab=20.16 E-value=2.3e+02 Score=24.77 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=45.2
Q ss_pred HHHHHHHHhhcCcceeeeecccCCCCCCCcchhhcccccchhhHHHHHHHHHHHcCCceEeccccHHHHHHHHHcCCcEE
Q 029371 27 TVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIA 106 (194)
Q Consensus 27 TIDLaylL~~~gv~~~f~T~tlG~np~y~~~~fY~~~~~~D~~RV~~lF~~A~~~gi~v~~rsvs~~eI~~~L~~G~~~~ 106 (194)
.+||-.| ++=||...|++.-...... |.+.+..-...+....+.+.+..-.+ .-..|.++|.+.+++|+ ++
T Consensus 49 ~~dl~rl-~~G~v~~q~~ai~v~~~~~------~~~~~~~~l~qid~~~~~~~~~~~~~-~~~~s~~di~~~~~~gk-ia 119 (369)
T 1itu_A 49 HTNIPKL-RAGFVGGQFWSVYTPCDTQ------NKDAVRRTLEQMDVVHRMCRMYPETF-LYVTSSAGIRQAFREGK-VA 119 (369)
T ss_dssp SCCHHHH-HHTTEEEEEEEECCCGGGT------TTTHHHHHHHHHHHHHHHHHHCTTTE-EECCSHHHHHHHHHHTC-EE
T ss_pred cccHHHH-HhcCCcEEEEEEEcCCCCC------chHHHHHHHHHHHHHHHHHHhcCCcE-EEECCHHHHHHHHHcCC-cE
Confidence 5666654 5568888888875443211 33334444455566666666543223 44678899999999998 55
Q ss_pred EEE
Q 029371 107 IAL 109 (194)
Q Consensus 107 IvL 109 (194)
++|
T Consensus 120 ~~l 122 (369)
T 1itu_A 120 SLI 122 (369)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 145
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=20.14 E-value=1.4e+02 Score=21.75 Aligned_cols=28 Identities=21% Similarity=0.069 Sum_probs=22.6
Q ss_pred HHHHcCCceEeccc-cHHHHHHHHHcCCc
Q 029371 77 KARSAGIKIECGSI-SGVEISLMILSGNY 104 (194)
Q Consensus 77 ~A~~~gi~v~~rsv-s~~eI~~~L~~G~~ 104 (194)
-++++|+.++-... +..++.+.+.+|+.
T Consensus 34 ~~~~~g~~~~~~~~~~~~~~~~~l~~g~~ 62 (228)
T 2pyy_A 34 IATQIGIESKLIEYSSVPELISAIKDNKV 62 (228)
T ss_dssp HHHHHTCCEEEEECSSHHHHHHHHHTTSC
T ss_pred HHHHhCCcEEEEEcCCHHHHHHHHHCCCc
Confidence 34556898888888 88999999999973
No 146
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei}
Probab=20.04 E-value=72 Score=27.29 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCCceEeccccHHHHHH
Q 029371 72 DMLFQKARSAGIKIECGSISGVEISL 97 (194)
Q Consensus 72 ~~lF~~A~~~gi~v~~rsvs~~eI~~ 97 (194)
..+.+.|++.|++|+.+.++.+||.+
T Consensus 245 ~~vl~~a~~~g~~v~e~~i~~~eL~~ 270 (328)
T 3u0g_A 245 DTVITLAKEAGIEVIEKRITRDEVYT 270 (328)
T ss_dssp HHHHHHHHHTTCCEEECCCCHHHHHT
T ss_pred HHHHHHHHHcCCeEEEEeCCHHHHhh
Confidence 66778899999999999999999976
Done!