Query 029372
Match_columns 194
No_of_seqs 129 out of 1092
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 11:52:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03402 Band_7_2 A subgroup of 100.0 2.5E-39 5.4E-44 258.0 19.7 176 6-186 1-185 (219)
2 cd03403 Band_7_stomatin_like B 100.0 2.6E-38 5.6E-43 251.6 18.9 171 10-183 1-172 (215)
3 cd03407 Band_7_4 A subgroup of 100.0 2E-38 4.4E-43 259.5 18.8 169 12-181 1-169 (262)
4 PRK11029 FtsH protease regulat 100.0 4.5E-37 9.7E-42 257.6 19.5 177 3-183 16-245 (334)
5 cd03405 Band_7_HflC Band_7_Hfl 100.0 5.3E-37 1.1E-41 248.2 18.4 172 7-182 1-179 (242)
6 PRK10930 FtsH protease regulat 100.0 2.2E-36 4.8E-41 259.8 20.3 174 3-180 93-270 (419)
7 cd03401 Band_7_prohibitin Band 100.0 2.8E-36 6E-41 236.7 18.5 176 6-183 1-194 (196)
8 TIGR01933 hflK HflK protein. H 100.0 5.2E-36 1.1E-40 245.1 18.8 172 7-182 1-176 (261)
9 cd03404 Band_7_HflK Band_7_Hfl 100.0 5.5E-36 1.2E-40 245.5 17.7 175 4-181 12-202 (266)
10 KOG2620 Prohibitins and stomat 100.0 2.9E-38 6.2E-43 249.6 3.3 178 1-181 1-183 (301)
11 TIGR01932 hflC HflC protein. H 100.0 1.4E-35 3.1E-40 248.4 19.0 174 3-180 16-232 (317)
12 COG0330 HflC Membrane protease 100.0 1.8E-33 3.9E-38 233.3 19.6 178 3-183 17-201 (291)
13 cd03406 Band_7_3 A subgroup of 100.0 4.7E-33 1E-37 228.3 19.3 176 3-181 1-192 (280)
14 smart00244 PHB prohibitin homo 100.0 1E-32 2.2E-37 209.0 19.5 156 5-164 1-159 (160)
15 KOG2621 Prohibitins and stomat 100.0 6E-34 1.3E-38 227.3 9.9 177 3-183 51-230 (288)
16 PF01145 Band_7: SPFH domain / 100.0 8E-33 1.7E-37 213.0 11.8 170 8-181 1-178 (179)
17 cd03408 Band_7_5 A subgroup of 99.9 2E-24 4.4E-29 170.6 13.7 157 5-164 14-206 (207)
18 KOG3090 Prohibitin-like protei 99.9 1E-23 2.3E-28 163.8 12.9 182 2-186 33-233 (290)
19 KOG3083 Prohibitin [Posttransl 99.9 1.2E-23 2.5E-28 163.3 6.4 180 5-187 25-223 (271)
20 cd03400 Band_7_1 A subgroup of 99.8 1.4E-20 3.1E-25 137.5 11.6 119 46-164 2-123 (124)
21 cd03399 Band_7_flotillin Band_ 99.8 4.4E-20 9.5E-25 135.7 10.4 115 47-163 2-126 (128)
22 cd02106 Band_7 The band 7 doma 99.8 5.2E-17 1.1E-21 116.5 14.0 113 51-165 6-121 (121)
23 COG2268 Uncharacterized protei 99.6 3.3E-15 7.1E-20 130.8 14.1 174 6-181 33-231 (548)
24 KOG2668 Flotillins [Intracellu 99.6 6.7E-15 1.5E-19 121.3 13.1 172 7-182 2-185 (428)
25 KOG2962 Prohibitin-related mem 99.6 8.1E-15 1.7E-19 115.0 9.4 156 4-162 20-184 (322)
26 PF13421 Band_7_1: SPFH domain 99.6 5.2E-13 1.1E-17 105.9 19.2 157 6-165 15-207 (211)
27 COG4260 Membrane protease subu 99.1 5.4E-09 1.2E-13 84.6 16.0 156 6-165 40-234 (345)
28 PTZ00491 major vault protein; 97.6 0.002 4.4E-08 59.9 14.5 173 8-183 465-684 (850)
29 PF12127 YdfA_immunity: SigmaW 96.7 0.011 2.5E-07 48.3 8.4 102 49-157 122-225 (316)
30 PRK13665 hypothetical protein; 95.2 0.033 7.1E-07 45.5 4.4 102 49-157 127-230 (316)
31 PF11978 MVP_shoulder: Shoulde 95.1 0.22 4.7E-06 35.7 7.9 95 59-153 10-116 (118)
32 COG1580 FliL Flagellar basal b 94.8 0.36 7.9E-06 36.7 9.1 80 65-152 76-157 (159)
33 PF03748 FliL: Flagellar basal 91.5 1.1 2.3E-05 30.7 6.6 51 99-151 44-96 (99)
34 PRK07718 fliL flagellar basal 90.2 1.1 2.4E-05 33.2 6.0 51 99-151 87-139 (142)
35 PRK06654 fliL flagellar basal 88.1 6.5 0.00014 30.5 8.9 83 60-152 93-177 (181)
36 PRK05697 flagellar basal body- 87.3 2.2 4.7E-05 31.6 5.8 53 99-151 78-134 (137)
37 PRK07021 fliL flagellar basal 84.8 3.7 8E-05 31.1 6.1 53 99-151 103-159 (162)
38 PRK08455 fliL flagellar basal 84.5 3.8 8.3E-05 31.8 6.2 52 98-151 126-179 (182)
39 PRK12785 fliL flagellar basal 84.0 4 8.6E-05 31.2 6.0 51 99-151 111-163 (166)
40 PRK05696 fliL flagellar basal 82.4 4.7 0.0001 30.8 5.9 54 98-151 110-167 (170)
41 COG4864 Uncharacterized protei 74.2 12 0.00027 30.0 6.1 61 94-157 167-229 (328)
42 PF01015 Ribosomal_S3Ae: Ribos 43.2 1.6E+02 0.0035 23.1 7.7 82 59-152 107-188 (194)
43 PF02502 LacAB_rpiB: Ribose/Ga 36.0 97 0.0021 22.9 4.8 46 126-172 11-56 (140)
44 PRK04057 30S ribosomal protein 33.8 2.4E+02 0.0052 22.3 9.6 69 59-138 101-169 (203)
45 PF09432 THP2: Tho complex sub 30.8 1.2E+02 0.0025 22.3 4.3 38 126-163 9-46 (132)
46 PF03780 Asp23: Asp23 family; 29.2 1E+02 0.0022 21.0 3.8 14 63-76 57-70 (108)
47 KOG4743 Cyclin-dependent kinas 28.1 1.2E+02 0.0026 23.8 4.3 39 101-142 15-53 (195)
48 PF10056 DUF2293: Uncharacteri 28.0 1.9E+02 0.0042 19.5 5.1 45 94-140 39-86 (86)
49 PF06635 NolV: Nodulation prot 26.2 1.4E+02 0.003 23.8 4.4 29 91-119 89-117 (207)
50 PRK14539 50S ribosomal protein 24.6 74 0.0016 25.0 2.6 40 106-145 91-138 (196)
51 PF08751 TrwC: TrwC relaxase; 24.1 1E+02 0.0022 25.8 3.5 57 111-167 181-243 (296)
52 PTZ00399 cysteinyl-tRNA-synthe 23.1 2.8E+02 0.0061 26.0 6.5 41 129-169 520-565 (651)
53 TIGR01608 citD citrate lyase a 21.6 1.9E+02 0.0041 19.9 3.8 29 122-150 39-67 (92)
54 PRK12613 galactose-6-phosphate 20.7 90 0.002 23.2 2.3 30 126-155 12-41 (141)
No 1
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=2.5e-39 Score=257.96 Aligned_cols=176 Identities=14% Similarity=0.250 Sum_probs=166.3
Q ss_pred EEEEecCCeeEEEeecCeeeeee-CCcceeecCccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEEEEEEEEcccch
Q 029372 6 GCIQVDQSTVAIKETFGKFDDVL-EPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKA 83 (194)
Q Consensus 6 ~~~~V~~ge~~Vv~~~Gk~~~~l-~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~~~ 83 (194)
||++|+|||+||+++||++.+++ +||+||++||+ +. ..+|+|.+.++.++ .+.|+|++++.+++.++|||.| |
T Consensus 1 g~~iV~~ge~~Vv~rfGk~~~t~~~pGL~~~~P~~-~~--~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~D--p 75 (219)
T cd03402 1 GLFVVEPNQARVLVLFGRYIGTIRRTGLRWVNPFS-SK--KRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVD--T 75 (219)
T ss_pred CeEEECCCeeEEEEEcCcCcccccCCceEEEeccc-eE--EEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcC--H
Confidence 68999999999999999999875 99999999998 54 38999999999988 5999999999999999999997 8
Q ss_pred hhhcccccChHHHHHHHHHHHHHHHccCCCHHHHHh-------cHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHH
Q 029372 84 SDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE-------QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEH 156 (194)
Q Consensus 84 ~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~-------~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~ 156 (194)
.+++|++.|++..|.+.+++++|+++|+++++++++ +|++++.++++.+++.++.|||+|.++.|+++.||++
T Consensus 76 ~ka~~~v~~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~e 155 (219)
T cd03402 76 AKAVFNVDDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAPE 155 (219)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCHH
Confidence 999999999999999999999999999999999985 5799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcceecccccccCc
Q 029372 157 VKRAMNEINAGMMCASFGIIVYFSHLTMYP 186 (194)
Q Consensus 157 i~~a~~~~~~A~~~~~a~ii~A~~~~~~~~ 186 (194)
+.+||.++|.|+++.+|+-..++|.+.|-+
T Consensus 156 i~~am~~R~~Ae~~~~Ar~~~~~Ga~~~~~ 185 (219)
T cd03402 156 IAQAMLQRQQASAIIAARRKIVEGAVGMVE 185 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 999999999999999999999999888864
No 2
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=100.00 E-value=2.6e-38 Score=251.60 Aligned_cols=171 Identities=27% Similarity=0.358 Sum_probs=162.1
Q ss_pred ecCCeeEEEeecCeeeeeeCCcceeecCccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEEEEEEEEcccchhhhcc
Q 029372 10 VDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFY 88 (194)
Q Consensus 10 V~~ge~~Vv~~~Gk~~~~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~~~~~~~~ 88 (194)
|+|||+||+++||++.++++||+||++||+ +.+.+.+|++.+.++++. .+.|+|++++.+++++.|||.| |.++++
T Consensus 1 V~~ge~~Vv~~~G~~~~~~~pG~~f~~P~~-~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d--~~~~~~ 77 (215)
T cd03403 1 VPQYERGVVERLGKYHRTLGPGLHFIIPFI-DRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVVD--PVKAVY 77 (215)
T ss_pred CCcceEEEEEEcCcCccccCCcEEEEeccc-eEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEec--HHHHHh
Confidence 689999999999999999999999999998 544248999999999987 5999999999999999999986 889998
Q ss_pred cccChHHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHHHHHHHHHHH
Q 029372 89 KLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAGM 168 (194)
Q Consensus 89 ~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~ 168 (194)
...+++..+.+.+++++|+++|++++++++++|+.+++.+++.|++.+++|||+|+++.|+++++|+++.++++++++|+
T Consensus 78 ~~~~~~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~~A~ 157 (215)
T cd03403 78 GVEDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAE 157 (215)
T ss_pred cCCCHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhcceecccccc
Q 029372 169 MCASFGIIVYFSHLT 183 (194)
Q Consensus 169 ~~~~a~ii~A~~~~~ 183 (194)
++++|++++|+|+.+
T Consensus 158 ~~~~a~i~~A~ge~~ 172 (215)
T cd03403 158 REKRAKIIEAEGERQ 172 (215)
T ss_pred HHHHHHHHHhHHHHH
Confidence 999999999999854
No 3
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=2e-38 Score=259.49 Aligned_cols=169 Identities=63% Similarity=0.866 Sum_probs=158.1
Q ss_pred CCeeEEEeecCeeeeeeCCcceeecCccceeEeEeeeeEEEEeeccCccccCCCcEEEEEEEEEEEEcccchhhhccccc
Q 029372 12 QSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLS 91 (194)
Q Consensus 12 ~ge~~Vv~~~Gk~~~~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~~v~TkD~~~v~v~~~v~yrV~d~~~~~~~~~~~ 91 (194)
+|+.|||++||++.++++||+||++||+ +++...+++|.+.++++.+++|+|++.|.++++++|||.|+++.+++|++.
T Consensus 1 q~~~~Vv~rfGk~~~~l~pGlhf~~P~i-~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~~ 79 (262)
T cd03407 1 QSQVAIIERFGKFFKVAWPGCHFVIPLV-ETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYKLG 79 (262)
T ss_pred CcEEEEEeecCcccccCCCCeEEEeccc-cceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHHHHcC
Confidence 5899999999999999999999999998 555348999999999988899999999999999999999744458899999
Q ss_pred ChHHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHHHHHHHHHHHHhh
Q 029372 92 NTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAGMMCA 171 (194)
Q Consensus 92 ~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~~~~ 171 (194)
++...|.+.+++++|+++|++++++++++|+.++..+.+.+++.+++|||.|+++.|+++.||+++++||++++.|+|++
T Consensus 80 ~~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~ 159 (262)
T cd03407 80 NPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQR 159 (262)
T ss_pred CHHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcceecccc
Q 029372 172 SFGIIVYFSH 181 (194)
Q Consensus 172 ~a~ii~A~~~ 181 (194)
+|.+.+|++.
T Consensus 160 ~a~~~~Aea~ 169 (262)
T cd03407 160 VAAVHKAEAE 169 (262)
T ss_pred HHHHHHhhHH
Confidence 9888877754
No 4
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=100.00 E-value=4.5e-37 Score=257.62 Aligned_cols=177 Identities=19% Similarity=0.207 Sum_probs=158.9
Q ss_pred ceeEEEEecCCeeEEEeecCeeee-------eeCCcceeecCccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEEEE
Q 029372 3 QALGCIQVDQSTVAIKETFGKFDD-------VLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASV 74 (194)
Q Consensus 3 ~~~~~~~V~~ge~~Vv~~~Gk~~~-------~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v 74 (194)
+++||++|++||+||+++||++.+ +++||+||++||+ +++ +.+|+|.+.++.+. +++|+|++.+.|++++
T Consensus 16 l~~s~~iV~ege~gVV~rFGk~~~~~~~~~~~l~PGLhf~iPfi-d~V-~~vdvR~q~~d~~~~~vlT~D~~~V~VD~~V 93 (334)
T PRK11029 16 LYMSVFVVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPFI-ETV-KMLDARIQTMDNQADRFVTKEKKDLIVDSYI 93 (334)
T ss_pred HHheEEEECCCeEEEEEECCceeccccccccccCCceEEEcCCc-eEE-EEEeeEEEEeeCCCceEEcCCCCEEEEEEEE
Confidence 467999999999999999999986 4899999999998 666 48999999999987 6999999999999999
Q ss_pred EEEEcccchhhhcccc--cC---hHHHHHHHHHHHHHHHccCCCHHHHHh-cHHHHHHHHHHHHHHH-------------
Q 029372 75 QYRALAEKASDAFYKL--SN---TRSQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEKA------------- 135 (194)
Q Consensus 75 ~yrV~d~~~~~~~~~~--~~---~~~~l~~~~~~~lr~~i~~~~~~~l~~-~R~~l~~~i~~~l~~~------------- 135 (194)
+|||.| |.++++.. .| +...|.+.+++++|+++|+++++++++ +|+++..++++.+++.
T Consensus 94 ~yrI~D--p~~~~~~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~ 171 (334)
T PRK11029 94 KWRISD--FSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAA 171 (334)
T ss_pred EEEECC--HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhccccccccccc
Confidence 999996 88877643 23 457789999999999999999999995 7999999999999964
Q ss_pred --------------------------hcccCeEEEEEEEeecCCCHHHHHHHHHHHHHHHhhhhcceecccccc
Q 029372 136 --------------------------MSHYGYEIVQTLIVDIEPDEHVKRAMNEINAGMMCASFGIIVYFSHLT 183 (194)
Q Consensus 136 --------------------------~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~~~~~a~ii~A~~~~~ 183 (194)
+.+|||+|.+|.|+++.||+++.+||+++|+|+|+++|..++|+|+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~ 245 (334)
T PRK11029 172 DDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEE 245 (334)
T ss_pred ccccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999998888887643
No 5
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=5.3e-37 Score=248.20 Aligned_cols=172 Identities=19% Similarity=0.195 Sum_probs=157.0
Q ss_pred EEEecCCeeEEEeecCeeee-eeCCcceeecCccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEEEEEEEEcccchh
Q 029372 7 CIQVDQSTVAIKETFGKFDD-VLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKAS 84 (194)
Q Consensus 7 ~~~V~~ge~~Vv~~~Gk~~~-~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~~~~ 84 (194)
||+|+|||+||+++||++.+ +++||+||++||+ +.+ +.+|++.+.++++. .++|+|++.+.+++++.|||.| |.
T Consensus 1 ~~iV~~ge~~Vv~~~Gk~~~~~~~pG~~~~~P~i-~~v-~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d--~~ 76 (242)
T cd03405 1 LFIVDEGEQAVVLRFGEVVRVVTEPGLHFKLPFI-QQV-KKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRITD--PL 76 (242)
T ss_pred CEEeCCCeEEEEEEcCccccccCCCCeeEEcCCc-ceE-EEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEcC--HH
Confidence 68999999999999999987 6899999999998 445 58999999988876 6999999999999999999996 77
Q ss_pred hhcccccCh----HHHHHHHHHHHHHHHccCCCHHHHHhc-HHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHH
Q 029372 85 DAFYKLSNT----RSQIQAYVFDVIRASVPKLDLDATFEQ-KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKR 159 (194)
Q Consensus 85 ~~~~~~~~~----~~~l~~~~~~~lr~~i~~~~~~~l~~~-R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~ 159 (194)
++++++.++ +..|.+.+++++|+++|++++++++++ |+++++.+++.|++.+++|||+|+++.|+++.||+++.+
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~ 156 (242)
T cd03405 77 RFYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSE 156 (242)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHH
Confidence 888776654 378999999999999999999999976 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcceeccccc
Q 029372 160 AMNEINAGMMCASFGIIVYFSHL 182 (194)
Q Consensus 160 a~~~~~~A~~~~~a~ii~A~~~~ 182 (194)
+|++++.|+|+++|+.++|+|+.
T Consensus 157 ai~~~~~ae~~~~a~~~~ae~~~ 179 (242)
T cd03405 157 SVYRRMRAERERIAAEFRAEGEE 179 (242)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHH
Confidence 99999999999988887777654
No 6
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=100.00 E-value=2.2e-36 Score=259.79 Aligned_cols=174 Identities=20% Similarity=0.301 Sum_probs=156.5
Q ss_pred ceeEEEEecCCeeEEEeecCeeeeeeCCcceeecCccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEEEEEEEEccc
Q 029372 3 QALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAE 81 (194)
Q Consensus 3 ~~~~~~~V~~ge~~Vv~~~Gk~~~~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~ 81 (194)
+++|||+|+|+|+|||++|||+.++++||+||++||+ +.+ ..++++.+....+. .++|+|++.|.|+++++|||.|
T Consensus 93 l~sg~yiV~e~E~gVV~rFGk~~~~l~PGLhfk~PfI-d~V-~~vdv~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI~D- 169 (419)
T PRK10930 93 AASGFYTIKEAERGVVTRFGKFSHLVEPGLNWKPTFI-DEV-KPVNVEAVRELAASGVMLTSDENVVRVEMNVQYRVTD- 169 (419)
T ss_pred HHheEEEECCCeEEEEEECCcCcceeCCceEEecCce-EEE-EEEEeEEEEEccCcceeECCCCCEEEEEEEEEEEECC-
Confidence 4679999999999999999999999999999999998 656 37888776544333 6999999999999999999996
Q ss_pred chhhhcccccChHHHHHHHHHHHHHHHccCCCHHHHHh-cHHHHHHHHHHHHHHHhccc--CeEEEEEEEeecCCCHHHH
Q 029372 82 KASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPDEHVK 158 (194)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~-~R~~l~~~i~~~l~~~~~~~--Gi~v~~v~i~~i~~p~~i~ 158 (194)
|.+|+|++.+++..|++.++++||+++|+++++++++ +|+++..++++.+++.+++| ||+|.+|+|+++.||++++
T Consensus 170 -p~~~lf~v~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~pP~eV~ 248 (419)
T PRK10930 170 -PEKYLFSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPPEEVK 248 (419)
T ss_pred -HHHHHHhccCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCCCHHHH
Confidence 8999999999999999999999999999999999996 69999999999999999987 9999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcceeccc
Q 029372 159 RAMNEINAGMMCASFGIIVYFS 180 (194)
Q Consensus 159 ~a~~~~~~A~~~~~a~ii~A~~ 180 (194)
+||++++.|++++++.+.+|++
T Consensus 249 ~Af~~v~~Are~~~~~i~eAea 270 (419)
T PRK10930 249 AAFDDAIAARENEQQYIREAEA 270 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888776655555544
No 7
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=100.00 E-value=2.8e-36 Score=236.74 Aligned_cols=176 Identities=15% Similarity=0.196 Sum_probs=151.8
Q ss_pred EEEEecCCeeEEEeecCeeee--eeCCcceeecCccceeEeEeeeeEEEEeeccCccccCCCcEEEEEEEEEEEEcccch
Q 029372 6 GCIQVDQSTVAIKETFGKFDD--VLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKA 83 (194)
Q Consensus 6 ~~~~V~~ge~~Vv~~~Gk~~~--~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~~v~TkD~~~v~v~~~v~yrV~d~~~ 83 (194)
||++|++|++||+++||+..+ +++||+||++||+ +.+ +.+|++.+.++++..+.|+|++.|++++.+.|++.++++
T Consensus 1 ~~~~V~~g~~gVv~~~g~~~~~~~~~pG~h~~~P~~-~~v-~~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~~~~~ 78 (196)
T cd03401 1 SLYNVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPWF-QKP-IIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDASQL 78 (196)
T ss_pred CEEEECCCcEEEEEEecCccccCccCCceEEEcccc-cee-EEEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeCHHHH
Confidence 589999999999999998654 8999999999998 556 489999999888778899999999999999999985333
Q ss_pred hhhcccc-cC-hHHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHHHH
Q 029372 84 SDAFYKL-SN-TRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAM 161 (194)
Q Consensus 84 ~~~~~~~-~~-~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~ 161 (194)
..++..+ .+ .+..|.+.+++++|+++|+++++|++++|++|+..|++.+++.+++|||.|+++.|+++.||+++.+|+
T Consensus 79 ~~~~~~~~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai 158 (196)
T cd03401 79 PRIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAV 158 (196)
T ss_pred HHHHHHhCcchHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHH
Confidence 3332222 23 466799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH--------------HHHHhhhhcceecccccc
Q 029372 162 NEIN--------------AGMMCASFGIIVYFSHLT 183 (194)
Q Consensus 162 ~~~~--------------~A~~~~~a~ii~A~~~~~ 183 (194)
++++ +|+.++++++++|+|+.+
T Consensus 159 ~~k~~a~q~~~~a~~~~~~a~~ea~~~~~~A~gea~ 194 (196)
T cd03401 159 EAKQVAQQEAERAKFVVEKAEQEKQAAVIRAEGEAE 194 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9744 455557778888888764
No 8
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=100.00 E-value=5.2e-36 Score=245.08 Aligned_cols=172 Identities=17% Similarity=0.253 Sum_probs=154.0
Q ss_pred EEEecCCeeEEEeecCeeeeeeCCcceeecCccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEEEEEEEEcccchhh
Q 029372 7 CIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASD 85 (194)
Q Consensus 7 ~~~V~~ge~~Vv~~~Gk~~~~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~~~~~ 85 (194)
+|+|+|||+||+++||++.++++||+||++||+ +.+ +.+|++.+....+. .++|+|++.+.++++++|||.| |.+
T Consensus 1 ~~iV~~ge~~Vv~~fGk~~~~l~pGl~~~~P~i-~~v-~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d--~~~ 76 (261)
T TIGR01933 1 IYTIGEAERGVVLRFGKYHRTVDPGLNWKPPFI-EEV-YPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRITD--PYK 76 (261)
T ss_pred CEEeCCCeEEEEEEcCccccccCCcceEECCCc-eEE-EEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEECC--HHH
Confidence 589999999999999999999999999999998 556 48998764422233 5899999999999999999996 889
Q ss_pred hcccccChHHHHHHHHHHHHHHHccCCCHHHHHh-cHHHHHHHHHHHHHHHhccc--CeEEEEEEEeecCCCHHHHHHHH
Q 029372 86 AFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPDEHVKRAMN 162 (194)
Q Consensus 86 ~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~-~R~~l~~~i~~~l~~~~~~~--Gi~v~~v~i~~i~~p~~i~~a~~ 162 (194)
++|++.+++..|.+.+++++|+++|+++++++++ +|+++++.+.+.+++.++.| ||.|+++.|+++.||+++++||+
T Consensus 77 ~~~~~~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a~~ 156 (261)
T TIGR01933 77 YLFSVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFD 156 (261)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHHHH
Confidence 9999999999999999999999999999999997 99999999999999999866 99999999999999999999999
Q ss_pred HHHHHHHhhhhcceeccccc
Q 029372 163 EINAGMMCASFGIIVYFSHL 182 (194)
Q Consensus 163 ~~~~A~~~~~a~ii~A~~~~ 182 (194)
+++.|++++++.+.+|++..
T Consensus 157 ~~~~a~q~~~~~~~~ae~~~ 176 (261)
T TIGR01933 157 DVIIAREDEERYINEAEAYA 176 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999988877665555443
No 9
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=5.5e-36 Score=245.54 Aligned_cols=175 Identities=23% Similarity=0.283 Sum_probs=153.2
Q ss_pred eeEEEEecCCeeEEEeecCeeeeeeCCcceeecCccceeEeEeeeeEEE----------Eee-c-cC-ccccCCCcEEEE
Q 029372 4 ALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQ----------QLD-V-RC-ETKTKDNVFVNV 70 (194)
Q Consensus 4 ~~~~~~V~~ge~~Vv~~~Gk~~~~l~pGl~~~~P~~~~~v~~~~~~r~~----------~~~-~-~~-~v~TkD~~~v~v 70 (194)
++||++|+|||+|||++||++.++++||+||++||+++ +...++++.+ ... . +. .++|+||+.+.+
T Consensus 12 ~~s~~~V~~ge~gVV~~fGk~~~~~~pGlh~~~P~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T~D~~~v~v 90 (266)
T cd03404 12 LSGFYIVQPGERGVVLRFGKYSRTVEPGLHWKLPYPIE-VVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGDENIVDV 90 (266)
T ss_pred HcEEEEECCCceEEeEEcCccccccCCceeEecCCCcE-EEEEecceeEEeeccccccccccCCCcccceEeCCCCEEEE
Confidence 57999999999999999999999999999999999844 3234444221 111 1 12 589999999999
Q ss_pred EEEEEEEEcccchhhhcccccChHHHHHHHHHHHHHHHccCCCHHHHHhc-HHHHHHHHHHHHHHHhccc--CeEEEEEE
Q 029372 71 VASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ-KNDIAKAVEEELEKAMSHY--GYEIVQTL 147 (194)
Q Consensus 71 ~~~v~yrV~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~-R~~l~~~i~~~l~~~~~~~--Gi~v~~v~ 147 (194)
++++.|||.| |.+++|+..+++..|.+.+++++|+++|++++++++++ |+++++.+++.+++.++.| ||.|+++.
T Consensus 91 d~~v~yrI~d--~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~~v~ 168 (266)
T cd03404 91 EFAVQYRISD--PYDYLFNVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVN 168 (266)
T ss_pred EEEEEEEECC--HHHHHhhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEEEEEE
Confidence 9999999997 88899999999999999999999999999999999976 9999999999999999876 99999999
Q ss_pred EeecCCCHHHHHHHHHHHHHHHhhhhcceecccc
Q 029372 148 IVDIEPDEHVKRAMNEINAGMMCASFGIIVYFSH 181 (194)
Q Consensus 148 i~~i~~p~~i~~a~~~~~~A~~~~~a~ii~A~~~ 181 (194)
|+++.||+++.+|+++++.|+|++++.+.+|++.
T Consensus 169 i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~ 202 (266)
T cd03404 169 LQDADPPEEVQDAFDDVNKARQDRERLINEAEAY 202 (266)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988877666554
No 10
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=100.00 E-value=2.9e-38 Score=249.59 Aligned_cols=178 Identities=37% Similarity=0.503 Sum_probs=163.8
Q ss_pred CCceeEEEE--ecCCeeEEEeecCeeeeeeCCcceeecCccceeEeEeeeeEEEEeecc-CccccCCCcEEEEEEEEEEE
Q 029372 1 MGQALGCIQ--VDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVR-CETKTKDNVFVNVVASVQYR 77 (194)
Q Consensus 1 ~g~~~~~~~--V~~ge~~Vv~~~Gk~~~~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~-~~v~TkD~~~v~v~~~v~yr 77 (194)
||..++|.. ||+.+++|+.||||+.++++||+||++|++ +++.+..+++...+..+ .+..|+||+.++++++++||
T Consensus 1 ~g~~~n~vi~~VpQ~~a~VvER~GkF~~iLePG~~fl~p~~-d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~r 79 (301)
T KOG2620|consen 1 MGNATNTVIRFVPQQEAAVVERFGKFHRILEPGLHFLPPVI-DKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYR 79 (301)
T ss_pred CCCcceeeEEeechhHhHHHHHhhhhhhhcCCcceechhhh-hhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEE
Confidence 788888877 999999999999999999999999999998 55556666554444444 47999999999999999999
Q ss_pred Ecccchhh--hcccccChHHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCH
Q 029372 78 ALAEKASD--AFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDE 155 (194)
Q Consensus 78 V~d~~~~~--~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~ 155 (194)
|.| |.+ +.|.++||+.+|.+++++.+|+.+|++++|.++++|+.++..|.+++++.+..||+++...+|+||.||+
T Consensus 80 v~d--p~~~dAsYgvenp~~aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~ 157 (301)
T KOG2620|consen 80 VVD--PYADDASYGVENPEYAIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPP 157 (301)
T ss_pred Eec--ccccccccccCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCH
Confidence 997 666 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcceecccc
Q 029372 156 HVKRAMNEINAGMMCASFGIIVYFSH 181 (194)
Q Consensus 156 ~i~~a~~~~~~A~~~~~a~ii~A~~~ 181 (194)
.+++||+++++|+|.++|.+.+++|+
T Consensus 158 ~V~~AM~~q~~AeR~krAailesEge 183 (301)
T KOG2620|consen 158 SVKRAMNMQNEAERMKRAAILESEGE 183 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999988875
No 11
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=100.00 E-value=1.4e-35 Score=248.43 Aligned_cols=174 Identities=15% Similarity=0.175 Sum_probs=151.6
Q ss_pred ceeEEEEecCCeeEEEeecCeeeeee-------CCcceeecCccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEEEE
Q 029372 3 QALGCIQVDQSTVAIKETFGKFDDVL-------EPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASV 74 (194)
Q Consensus 3 ~~~~~~~V~~ge~~Vv~~~Gk~~~~l-------~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v 74 (194)
+++||++|+|||+||+++||++.++. +||+||++||+ +++ +.+|+|.+.++.+. +++|+|++++.+++++
T Consensus 16 l~~~~~iV~~ge~gVv~~fGk~~~~~~~~~~v~~pGlhf~~P~i-~~v-~~vd~r~q~~~~~~~~vlTkD~~~V~Vd~~V 93 (317)
T TIGR01932 16 LFQPFFIIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPFI-EHV-KIFDAKIQTMDGRPDRIPTKEKKDIIIDTYI 93 (317)
T ss_pred HHheEEEECCCeEEEEEecCceeccccccccccCCCeEEEeccc-cEE-EEeeeeEEEecCCcceeECCCCCEEEEEEEE
Confidence 46799999999999999999998664 79999999998 666 48999999999887 6999999999999999
Q ss_pred EEEEcccchhhhccccc--C---hHHHHHHHHHHHHHHHccCCCHHHHHh-cHHHH------------------------
Q 029372 75 QYRALAEKASDAFYKLS--N---TRSQIQAYVFDVIRASVPKLDLDATFE-QKNDI------------------------ 124 (194)
Q Consensus 75 ~yrV~d~~~~~~~~~~~--~---~~~~l~~~~~~~lr~~i~~~~~~~l~~-~R~~l------------------------ 124 (194)
+|||.| |.++++++. + ++..|.+.+++++|+++|+++++++++ +|+++
T Consensus 94 ~yrV~d--~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~ 171 (317)
T TIGR01932 94 RWRIED--FKKYYLSTGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITK 171 (317)
T ss_pred EEEECC--HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccccccccccch
Confidence 999996 888887654 3 467899999999999999999999995 45555
Q ss_pred -----HHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHHHHHHHHHHHHhhhhcceeccc
Q 029372 125 -----AKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAGMMCASFGIIVYFS 180 (194)
Q Consensus 125 -----~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~~~~~a~ii~A~~ 180 (194)
...+.+.+.+.+.+|||.|+++.|+++.||+++++|+++++.|+|+++|...+++|
T Consensus 172 ~r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~eg 232 (317)
T TIGR01932 172 GREILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQG 232 (317)
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888888999999999999999999999999999999999999876555544443
No 12
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-33 Score=233.35 Aligned_cols=178 Identities=27% Similarity=0.378 Sum_probs=165.7
Q ss_pred ceeEEEEecCCeeEEEeecCeeeeeeC-CcceeecCc---cceeEeEeeeeEEEEeec-cC-ccccCCCcEEEEEEEEEE
Q 029372 3 QALGCIQVDQSTVAIKETFGKFDDVLE-PGCHCLPWC---LGSQVAGQLSLRVQQLDV-RC-ETKTKDNVFVNVVASVQY 76 (194)
Q Consensus 3 ~~~~~~~V~~ge~~Vv~~~Gk~~~~l~-pGl~~~~P~---~~~~v~~~~~~r~~~~~~-~~-~v~TkD~~~v~v~~~v~y 76 (194)
+++++++|+|++.+++.+||++.+++. ||+||++|| +... ...++.+.+.++. ++ .+.|+|+..|.++++++|
T Consensus 17 ~~~~~~~v~~~~~~vv~r~G~~~~~~~~pGl~f~iP~~~~~~~~-~~~~~~~~~~~d~~~~q~viT~D~~~V~vd~~v~~ 95 (291)
T COG0330 17 LFSSIFVVKEGERGVVLRFGRYTRTLGEPGLHFKIPFPEAIEEV-VVRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQY 95 (291)
T ss_pred HHceeEEEcCCceEEEEEecceeeecCCCceEEEcCCccceeee-eeeeeeEEEEeccCCcceEEecCCCEEEEEEEEEE
Confidence 467899999999999999999999999 999999998 4333 2478888999999 66 599999999999999999
Q ss_pred EEcccchhhhcccccChHHHHHHHHHHHHHHHccCCCHHHHHhcHH-HHHHHHHHHHHHHhcccCeEEEEEEEeecCCCH
Q 029372 77 RALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKN-DIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDE 155 (194)
Q Consensus 77 rV~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~-~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~ 155 (194)
||.| |.++++++.+++..+.+.+++.+|+++|++++++++++|+ .++..+.+.|++.+++|||.|.+++|+++.||+
T Consensus 96 rv~d--~~~~~~~v~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~i~~p~ 173 (291)
T COG0330 96 RVTD--PQKAVYNVENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDPPE 173 (291)
T ss_pred EEcC--HHHHHHhcCCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEeecCCCH
Confidence 9997 8899999999999999999999999999999999998888 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcceecccccc
Q 029372 156 HVKRAMNEINAGMMCASFGIIVYFSHLT 183 (194)
Q Consensus 156 ~i~~a~~~~~~A~~~~~a~ii~A~~~~~ 183 (194)
++.+||+++|.|++++++.+.+|+|...
T Consensus 174 ev~~a~~~~~~Aer~~ra~i~~Ae~~~~ 201 (291)
T COG0330 174 EVQAAMEKQMAAERDKRAEILEAEGEAQ 201 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHh
Confidence 9999999999999999999999998543
No 13
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=4.7e-33 Score=228.33 Aligned_cols=176 Identities=13% Similarity=0.140 Sum_probs=150.3
Q ss_pred ceeEEEEecCCeeEEEeecCeee-eeeCCcceeecCccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEE-EEEEEEc
Q 029372 3 QALGCIQVDQSTVAIKETFGKFD-DVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVA-SVQYRAL 79 (194)
Q Consensus 3 ~~~~~~~V~~ge~~Vv~~~Gk~~-~~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~-~v~yrV~ 79 (194)
+++|+++|++|++||+++||++. .+++|||||++||+ +.+. .++++.++.+.+. .+.|+||..++++. .+.|+++
T Consensus 1 ~~ssv~iV~ege~gVV~RfGkv~~~~l~PGLHfkiPfI-d~V~-~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivd 78 (280)
T cd03406 1 LSSALHKIEEGHVGVYYRGGALLTSTSGPGFHLMLPFI-TTYK-SVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLI 78 (280)
T ss_pred CCceEEEECCCeEEEEEECCcccccccCCceEEecCCc-eEEE-EEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecC
Confidence 46799999999999999999985 57899999999998 6663 7999998888765 68999999999995 4666665
Q ss_pred ccchhhhc--ccccChHHHHHHHHHHHHHHHccCCCHHHHHh-cHHHHHHHHHHHHHHHhccc--CeEEEEEEEeecCCC
Q 029372 80 AEKASDAF--YKLSNTRSQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPD 154 (194)
Q Consensus 80 d~~~~~~~--~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~-~R~~l~~~i~~~l~~~~~~~--Gi~v~~v~i~~i~~p 154 (194)
+......+ |+..+....|.+.+++++|+++|+++++++++ +|+++...+++.+++.+++| ||.|.+|.|+++.||
T Consensus 79 p~~~~~~~~~y~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P 158 (280)
T cd03406 79 PDSVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIP 158 (280)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCC
Confidence 32222222 34456788999999999999999999999996 89999999999999999987 999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh--------hcceecccc
Q 029372 155 EHVKRAMNEINAGMMCAS--------FGIIVYFSH 181 (194)
Q Consensus 155 ~~i~~a~~~~~~A~~~~~--------a~ii~A~~~ 181 (194)
+++.++| ++|.|||++. |...+|+++
T Consensus 159 ~~V~~af-erM~aER~k~~~~~~~~~~~~~~ae~~ 192 (280)
T cd03406 159 EAIRRNY-ELMEAEKTKLLIAIQKQKVVEKEAETE 192 (280)
T ss_pred HHHHHHH-HHHHHHHHhhhhccchhHHHHHHhhHH
Confidence 9999998 6999999999 766666654
No 14
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=100.00 E-value=1e-32 Score=209.02 Aligned_cols=156 Identities=30% Similarity=0.428 Sum_probs=145.4
Q ss_pred eEEEEecCCeeEEEeecCeeeeeeCCcceeecCccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEEEEEEEEcccch
Q 029372 5 LGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKA 83 (194)
Q Consensus 5 ~~~~~V~~ge~~Vv~~~Gk~~~~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~~~ 83 (194)
+||++|+|||+||+++||+..++++||+||++||+ +.+ +.++++.+..+.+. .+.|+|++++.+++++.|||.| |
T Consensus 1 ~~~~~V~~g~~~v~~~~G~~~~~~~pG~~~~~P~~-~~~-~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~d--~ 76 (160)
T smart00244 1 AAIKVVGEGEAGVVERLGRVLRVLGPGLHFLIPFI-DRV-KKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVLD--P 76 (160)
T ss_pred CcEEEEcccEEEEEEecCccccccCCCEEEEecce-eEE-EEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEcc--H
Confidence 47999999999999999999999999999999998 555 48999999998877 6999999999999999999996 7
Q ss_pred hhhcccccChH-HHHHHHHHHHHHHHccCCCHHHHHh-cHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHHHH
Q 029372 84 SDAFYKLSNTR-SQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAM 161 (194)
Q Consensus 84 ~~~~~~~~~~~-~~l~~~~~~~lr~~i~~~~~~~l~~-~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~ 161 (194)
.+++++..+++ ..|.+.+++++|+++++++++++++ +|+++++.+++.+++.+++||++++++.|+++.+|+++++|+
T Consensus 77 ~~~~~~~~~~~~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~ai 156 (160)
T smart00244 77 LKAVYRVLDADYAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQEAM 156 (160)
T ss_pred HHHhhhcCCHHHHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHHHH
Confidence 78888877777 5899999999999999999999998 799999999999999999999999999999999999999999
Q ss_pred HHH
Q 029372 162 NEI 164 (194)
Q Consensus 162 ~~~ 164 (194)
+++
T Consensus 157 ~~k 159 (160)
T smart00244 157 EQQ 159 (160)
T ss_pred Hhh
Confidence 875
No 15
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=100.00 E-value=6e-34 Score=227.28 Aligned_cols=177 Identities=20% Similarity=0.239 Sum_probs=169.1
Q ss_pred ceeEEEEecCCeeEEEeecCeeee--eeCCcceeecCccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEEEEEEEEc
Q 029372 3 QALGCIQVDQSTVAIKETFGKFDD--VLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRAL 79 (194)
Q Consensus 3 ~~~~~~~V~~ge~~Vv~~~Gk~~~--~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~ 79 (194)
+++|+++|++.|++|++|+|+... .-+||+.|+.|++ +.. +++|+|++.+++|+ +++|||...+.|+++++|||.
T Consensus 51 ~~fclKiv~eYeR~VIfRLGRl~~~~~rGPGi~fvlPCI-Dt~-~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri~ 128 (288)
T KOG2621|consen 51 IWFCLKIVQEYERAVIFRLGRLRTGGARGPGLFFLLPCI-DTF-RKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRIS 128 (288)
T ss_pred HHHHHHhhHHHhhhhheeeeeccccCCCCCCeEEEeccc-cee-eeeeeeEEeecCCHHHHhcccceEEEeceEEEEEec
Confidence 578889999999999999999875 6799999999999 666 49999999999999 699999999999999999999
Q ss_pred ccchhhhcccccChHHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHH
Q 029372 80 AEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKR 159 (194)
Q Consensus 80 d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~ 159 (194)
| |...+.+++|.....+-++++.||+++|+.++.|+++.|+.++.+++..|++....|||+|++|+|+||.+|.+.+.
T Consensus 129 d--pi~sv~~V~Da~~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp~qlqr 206 (288)
T KOG2621|consen 129 D--PIIAVNNVGDADNATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLPAQLQR 206 (288)
T ss_pred C--HHHHHHhccCHHHHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeechHhhhh
Confidence 7 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcceecccccc
Q 029372 160 AMNEINAGMMCASFGIIVYFSHLT 183 (194)
Q Consensus 160 a~~~~~~A~~~~~a~ii~A~~~~~ 183 (194)
+|....+|.|++.|+++.|+|+.+
T Consensus 207 amaaeAeA~reA~Akviaaege~~ 230 (288)
T KOG2621|consen 207 AMAAEAEATREARAKVIAAEGEKK 230 (288)
T ss_pred hhhchhhhhhhhhhhHHHHHhhhH
Confidence 999999999999999999999864
No 16
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=100.00 E-value=8e-33 Score=212.98 Aligned_cols=170 Identities=27% Similarity=0.394 Sum_probs=121.5
Q ss_pred EEecCCeeEEEeecCeeeeeeCCcceeecCccceeEeEeeeeEEEEeeccC---ccccCCCcEEEEEEEEEEEEcccchh
Q 029372 8 IQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC---ETKTKDNVFVNVVASVQYRALAEKAS 84 (194)
Q Consensus 8 ~~V~~ge~~Vv~~~Gk~~~~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~---~v~TkD~~~v~v~~~v~yrV~d~~~~ 84 (194)
++|+||++||++++|+...+++||+||++||+ +.+ +.++++.+.++++. .+.|+|+..+.+++.+.|+|.+ +.
T Consensus 1 ~~V~~g~~~V~~~~G~~~~~~~~G~~~~~P~~-~~~-~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~~--~~ 76 (179)
T PF01145_consen 1 YTVPPGEVGVVVRFGKVKDVLGPGLHFVIPFI-QKV-YVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIED--PP 76 (179)
T ss_dssp -------------------------------E-EE---S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES---CC
T ss_pred CEeCCCEEEEEEECCeEeEEECCCeEEEeCCc-CeE-EEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEech--HH
Confidence 57999999999999999999999999998887 556 48999999999988 7999999999999999999965 66
Q ss_pred hhcccc----cChHHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHHH
Q 029372 85 DAFYKL----SNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRA 160 (194)
Q Consensus 85 ~~~~~~----~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a 160 (194)
.++.++ .+++..|++.++.++|++++++++++++++|.++.+.+++.|++.+++|||+|.++.|.++.+|+++.++
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~ 156 (179)
T PF01145_consen 77 KFVQNYEGGEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEA 156 (179)
T ss_dssp CCCCCCSS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHH
T ss_pred HHHHhhhcchhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHH
Confidence 777666 6789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-hhcceecccc
Q 029372 161 MNEINAGMMCA-SFGIIVYFSH 181 (194)
Q Consensus 161 ~~~~~~A~~~~-~a~ii~A~~~ 181 (194)
+++++.|++++ ++++.+|+++
T Consensus 157 i~~~~~a~~~~~~~~~~~a~~e 178 (179)
T PF01145_consen 157 IEEKQRAEQEAQQAEIERAEAE 178 (179)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999 8988888765
No 17
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.92 E-value=2e-24 Score=170.59 Aligned_cols=157 Identities=17% Similarity=0.233 Sum_probs=132.9
Q ss_pred eEEEEecCCeeEEEeecCeeeeeeCCcceeec----Cccc--------------eeEeEeeeeEEEEeec---cC----c
Q 029372 5 LGCIQVDQSTVAIKETFGKFDDVLEPGCHCLP----WCLG--------------SQVAGQLSLRVQQLDV---RC----E 59 (194)
Q Consensus 5 ~~~~~V~~ge~~Vv~~~Gk~~~~l~pGl~~~~----P~~~--------------~~v~~~~~~r~~~~~~---~~----~ 59 (194)
.|.++|++||+||++++|++.++++||.|+++ |++. ..+ +.++++.+.... +. .
T Consensus 14 ~s~~iV~e~~~av~~~~Gk~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~ 92 (207)
T cd03408 14 GSQLIVREGQAAVFVNEGKVADVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEV-YFFNTRVFTDLLWGTPAPVFGR 92 (207)
T ss_pred CCEEEEcCCcEEEEEECCEEEEEecCCcceeeecCccHHHHhcChhhhCcCCceeEE-EEEECEEEeccccCCCCCeeee
Confidence 38899999999999999999999999999754 3321 113 367777766432 11 3
Q ss_pred cccCCCcEEEEEEEEEEEEcccchhhhccccc---------ChHHHHHHHHHHHHHHHccCCCHHHHHhc--HHHHHHHH
Q 029372 60 TKTKDNVFVNVVASVQYRALAEKASDAFYKLS---------NTRSQIQAYVFDVIRASVPKLDLDATFEQ--KNDIAKAV 128 (194)
Q Consensus 60 v~TkD~~~v~v~~~v~yrV~d~~~~~~~~~~~---------~~~~~l~~~~~~~lr~~i~~~~~~~l~~~--R~~l~~~i 128 (194)
..|+|++++.+++.+.|||.| |.+++.++. +....+.+.++.++|+++|++++++++.+ |+++++.+
T Consensus 93 ~~~~~~v~v~v~~~~~~kI~D--p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~~v 170 (207)
T cd03408 93 DSEFGGVPLRAFGTYSLKVTD--PVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSKAV 170 (207)
T ss_pred CCccceEEEEeeEEEEEEEcC--HHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHHHHH
Confidence 567889999999999999996 888876552 35678999999999999999999999976 99999999
Q ss_pred HHHHHHHhcccCeEEEEEEEeecCCCHHHHHHHHHH
Q 029372 129 EEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEI 164 (194)
Q Consensus 129 ~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~ 164 (194)
++.+++.+++||++|.++.|+++.+|++++++++++
T Consensus 171 ~~~l~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai~~r 206 (207)
T cd03408 171 REALAPWFASFGLELVSVYIESISYPDEVQKLIDKR 206 (207)
T ss_pred HHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHhh
Confidence 999999999999999999999999999999998864
No 18
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1e-23 Score=163.80 Aligned_cols=182 Identities=16% Similarity=0.210 Sum_probs=157.1
Q ss_pred CceeEEEEecCCeeEEEee-cCee-eeeeCCcceeecCccceeEeEeeeeEEEEeeccCccccCCCcEEEEEEEEEEEEc
Q 029372 2 GQALGCIQVDQSTVAIKET-FGKF-DDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRAL 79 (194)
Q Consensus 2 g~~~~~~~V~~ge~~Vv~~-~Gk~-~~~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~~v~TkD~~~v~v~~~v~yrV~ 79 (194)
|...++|.|+-||++++++ +|.. .+++..|.||.+|||+.-+ .+|.|-+...+++..-|+|.+.|+++..+.-|..
T Consensus 33 ~v~~sl~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwfe~pI--iYDvRarP~~i~S~tGskDLQmVnI~lRVLsRP~ 110 (290)
T KOG3090|consen 33 GVTQSLYNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWFERPI--IYDVRARPRLISSPTGSKDLQMVNIGLRVLSRPM 110 (290)
T ss_pred eecceeEeecCCceEEEEeccccchhccccCCceEeeeccccce--eeeeccCcccccCCCCCcceeEEEeeeEEecCCC
Confidence 3567899999999999995 5554 4789999999989985543 8999999999988999999999999999998887
Q ss_pred ccchhhhccc--ccCh-HHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHH
Q 029372 80 AEKASDAFYK--LSNT-RSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEH 156 (194)
Q Consensus 80 d~~~~~~~~~--~~~~-~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~ 156 (194)
.+ ....+|+ ..|+ ++.|.+++.+.|++++++++..+++++|+.++..|++.|.++..++.|.+++|.|++++|.++
T Consensus 111 ~~-~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~e 189 (290)
T KOG3090|consen 111 AD-QLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKE 189 (290)
T ss_pred hh-hhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCHH
Confidence 53 3444553 2465 678899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH--------------HHHHhhhhcceecccccccCc
Q 029372 157 VKRAMNEIN--------------AGMMCASFGIIVYFSHLTMYP 186 (194)
Q Consensus 157 i~~a~~~~~--------------~A~~~~~a~ii~A~~~~~~~~ 186 (194)
+..|++++. +|+|+++.++++|+|+.+-|.
T Consensus 190 fTaAiEaKQvA~QeAqRA~F~VekA~qek~~~ivrAqGEaksAq 233 (290)
T KOG3090|consen 190 FTAAIEAKQVAAQEAQRAKFIVEKAEQEKQSAIVRAQGEAKSAQ 233 (290)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhccchHHHH
Confidence 999998864 566778888999999987654
No 19
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.2e-23 Score=163.33 Aligned_cols=180 Identities=15% Similarity=0.198 Sum_probs=156.3
Q ss_pred eEEEEecCCeeEEEee-c-CeeeeeeCCcceeecCccceeEeEeeeeEEEEeeccCccccCCCcEEEEEEEEEEEEcccc
Q 029372 5 LGCIQVDQSTVAIKET-F-GKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEK 82 (194)
Q Consensus 5 ~~~~~V~~ge~~Vv~~-~-Gk~~~~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~~v~TkD~~~v~v~~~v~yrV~d~~ 82 (194)
+++|.|+-|+++|++. | |....+.+.|-||++||.+.- +.+|.|.+..+++...-|||-++|++...+.||... +
T Consensus 25 s~ly~vdgg~ravifdrf~gv~~~vvgegthflipw~qk~--~i~d~rs~p~~v~~itGskdLQ~VniTlril~rp~~-s 101 (271)
T KOG3083|consen 25 SALYNVDGGHRAVIFDRFRGVQDQVVGEGTHFLIPWVQKP--IIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVV-S 101 (271)
T ss_pred hhhcccCCCceeEEeecccchhhhcccCCceeeeeeccCc--EEEeccCCCcccccccCchhhhcccceEEEEecccc-c
Confidence 5789999999999995 5 666688999999999998443 489999998888888999999999999999999874 2
Q ss_pred hhhhccc-c-cCh-HHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHH
Q 029372 83 ASDAFYK-L-SNT-RSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKR 159 (194)
Q Consensus 83 ~~~~~~~-~-~~~-~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~ 159 (194)
-....|. + .|+ ++.|.++....|++++++++..+++++|+.++..+++.|.++.+.+|+.++++.++++++.++..+
T Consensus 102 qLP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEFt~ 181 (271)
T KOG3083|consen 102 QLPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEFTE 181 (271)
T ss_pred ccchHHHhhcccccccccccchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHHHH
Confidence 3344443 2 344 777888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH--------------HHHHHhhhhcceecccccccCce
Q 029372 160 AMNEI--------------NAGMMCASFGIIVYFSHLTMYPS 187 (194)
Q Consensus 160 a~~~~--------------~~A~~~~~a~ii~A~~~~~~~~~ 187 (194)
|++++ ++|+|+++|.+|+|+|+.+-|+-
T Consensus 182 AvE~KQVAQQEAErarFvVeKAeQqk~aavIsAEGds~aA~l 223 (271)
T KOG3083|consen 182 AVEAKQVAQQEAERARFVVEKAEQQKKAAVISAEGDSKAAEL 223 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeecccchHHHHH
Confidence 99874 57788899999999999876653
No 20
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.85 E-value=1.4e-20 Score=137.49 Aligned_cols=119 Identities=21% Similarity=0.372 Sum_probs=103.1
Q ss_pred eeeeEEEEeeccCccccCCCcEEEEEEEEEEEEcccchhhhcccc-cC-hHHHHHHHHHHHHHHHccCCCHHHHHh-cHH
Q 029372 46 QLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKL-SN-TRSQIQAYVFDVIRASVPKLDLDATFE-QKN 122 (194)
Q Consensus 46 ~~~~r~~~~~~~~~v~TkD~~~v~v~~~v~yrV~d~~~~~~~~~~-~~-~~~~l~~~~~~~lr~~i~~~~~~~l~~-~R~ 122 (194)
.+++|.++.+.+.+++|+||+.+.++++++|||.++++...+... .+ .++.|.+.+++++|+++|++++++++. +|+
T Consensus 2 ~~~~r~~~~~~~~~v~T~D~~~v~vd~~v~y~V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~ 81 (124)
T cd03400 2 EYSTRLQEVDEKIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRK 81 (124)
T ss_pred cccceeeecccceEEECCCCCEEEEEEEEEEEEChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhHH
Confidence 467888887777789999999999999999999863322222232 23 456799999999999999999999995 899
Q ss_pred HHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHHHHHHH
Q 029372 123 DIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEI 164 (194)
Q Consensus 123 ~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~ 164 (194)
++++.+.+.+++.+++||+.|+++.|+++.||+++.+|++++
T Consensus 82 ~i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k 123 (124)
T cd03400 82 EIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK 123 (124)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence 999999999999999999999999999999999999999875
No 21
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.83 E-value=4.4e-20 Score=135.66 Aligned_cols=115 Identities=22% Similarity=0.300 Sum_probs=101.9
Q ss_pred eeeEEEEeeccC-ccccCCCcEEEEEEEEEEEEcccchhhhccc---------ccChHHHHHHHHHHHHHHHccCCCHHH
Q 029372 47 LSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYK---------LSNTRSQIQAYVFDVIRASVPKLDLDA 116 (194)
Q Consensus 47 ~~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~~~~~~~~~---------~~~~~~~l~~~~~~~lr~~i~~~~~~~ 116 (194)
+++|.+.+++++ +++|+|++++.++++++|||.| |.+++.. ..+.++.+.+.+++++|+++|++++++
T Consensus 2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~d--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~e 79 (128)
T cd03399 2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGG--TEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEE 79 (128)
T ss_pred ccccceeeeccccceecCCCcEEEEEEEEEEEeCC--CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 578899999988 6999999999999999999997 4444321 133578899999999999999999999
Q ss_pred HHhcHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHHHHHH
Q 029372 117 TFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNE 163 (194)
Q Consensus 117 l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~ 163 (194)
++++|++|.+++.+.++..+++||++|.++.|+++.+|+++.+++.+
T Consensus 80 l~~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~~ 126 (128)
T cd03399 80 IYEDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLGD 126 (128)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcCC
Confidence 99999999999999999999999999999999999999998877643
No 22
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.75 E-value=5.2e-17 Score=116.52 Aligned_cols=113 Identities=36% Similarity=0.563 Sum_probs=99.7
Q ss_pred EEEeeccC-ccccCCCcEEEEEEEEEEEEcccchhhhcccccCh--HHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHH
Q 029372 51 VQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNT--RSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKA 127 (194)
Q Consensus 51 ~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~~~~~~~~~~~~~--~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~ 127 (194)
..+.+.+. .+.|+|+.++.+++++.|+|.| |..+++..... ...+.+.+..++|+++++++++++.++|+++++.
T Consensus 6 ~~~~~~~~~~~~t~d~~~i~~~~~~~~~v~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~ 83 (121)
T cd02106 6 RQTLDVPPQEVLTKDNVPVRVDAVVQYRVVD--PVKALYNVRDPEDEEALRQLAQSALRSVIGKMTLDELLEDRDEIAAE 83 (121)
T ss_pred eEEecCCCceEEecCCCEEEEEEEEEEEEeC--HHHHHHhcCCccHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHH
Confidence 33444444 6999999999999999999997 55566655444 4799999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCeEEEEEEEeecCCCHHHHHHHHHHH
Q 029372 128 VEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEIN 165 (194)
Q Consensus 128 i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~ 165 (194)
+++.++..+++||+++.++.|+++.+|+++.+++++++
T Consensus 84 v~~~l~~~~~~~Gi~i~~v~i~~i~~~~~~~~ai~~~~ 121 (121)
T cd02106 84 VREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMEDRQ 121 (121)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCHHHHHHHHhhC
Confidence 99999999999999999999999999999999998753
No 23
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.65 E-value=3.3e-15 Score=130.84 Aligned_cols=174 Identities=17% Similarity=0.160 Sum_probs=139.0
Q ss_pred EEEEecCCeeEEEeec---------CeeeeeeCCcceeecCccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEEEEE
Q 029372 6 GCIQVDQSTVAIKETF---------GKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQ 75 (194)
Q Consensus 6 ~~~~V~~ge~~Vv~~~---------Gk~~~~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v~ 75 (194)
.||.+.+...++|..+ |.-.+++-+|+||++|+| +.. +..++++..+++.. .+.|+||.++++++..+
T Consensus 33 ~~y~~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~-q~~-~r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~ 110 (548)
T COG2268 33 RFYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPIF-QTI-ERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAY 110 (548)
T ss_pred eeEEecCCCceEEEeccccCCcccccCCccEEecCceEEecce-eee-EEeeeeeeeeeeeeeeeEecCCCccceeEEEE
Confidence 5665544444554444 555689999999999998 444 48899988888884 79999999999999999
Q ss_pred EEEccc--chhhhcccc--c----ChHHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHHHHHHHHHHhcccCeEEEEEE
Q 029372 76 YRALAE--KASDAFYKL--S----NTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTL 147 (194)
Q Consensus 76 yrV~d~--~~~~~~~~~--~----~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~ 147 (194)
-+|.|+ +...+.-++ . +.+..+...+++++|.+++++|+.+++++|..|++.+.+.....+.+.|+.++++.
T Consensus 111 v~i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s~~ 190 (548)
T COG2268 111 VKIGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSLA 190 (548)
T ss_pred EEecCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCeeeeeee
Confidence 999973 233333222 1 34667888999999999999999999999999999999999999999999999999
Q ss_pred EeecCCC-------HHHHHHHHHHHHHHHhhhhcceecccc
Q 029372 148 IVDIEPD-------EHVKRAMNEINAGMMCASFGIIVYFSH 181 (194)
Q Consensus 148 i~~i~~p-------~~i~~a~~~~~~A~~~~~a~ii~A~~~ 181 (194)
|.|+..+ ..|.+|...+..++-.+.+.+..++..
T Consensus 191 I~~i~d~~~~~~d~~~yLda~G~r~i~qv~~~a~ia~~E~~ 231 (548)
T COG2268 191 INDINDTSKENQDPNNYLDALGRRRIAQVLQDAEIAENEAE 231 (548)
T ss_pred ecccccccccccChhhhhhhcChHHHHHHHHHHHHHHhhhh
Confidence 9999998 888888887776666666665555443
No 24
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.63 E-value=6.7e-15 Score=121.28 Aligned_cols=172 Identities=15% Similarity=0.160 Sum_probs=144.0
Q ss_pred EEEecCCeeEEEeecCeeeeeeCCcceeecCccceeEeEeeeeEEEEeeccCc-cccCCCcEEEEEEEEEEEEcccchhh
Q 029372 7 CIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCE-TKTKDNVFVNVVASVQYRALAEKASD 85 (194)
Q Consensus 7 ~~~V~~ge~~Vv~~~Gk~~~~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~~-v~TkD~~~v~v~~~v~yrV~d~~~~~ 85 (194)
|++-++++..++..+|.....+-+|.+.++| +.+. .+|+...++++.++ +.|..|+++.|.+.+.-+|..+++..
T Consensus 2 f~~~~~~~~l~itg~g~~~~~lv~~~wvf~w---q~~q-~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~e 77 (428)
T KOG2668|consen 2 FKVAGASQYLAITGGGIEDIKLVKKSWVFPW---QQCT-VFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADE 77 (428)
T ss_pred CccCCccceEEeecccccCceecccceeeee---eeee-EEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHH
Confidence 4566889999999999877777777755544 4454 89999999999986 99999999999999988887544433
Q ss_pred hc-cc--------ccChHHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCH-
Q 029372 86 AF-YK--------LSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDE- 155 (194)
Q Consensus 86 ~~-~~--------~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~- 155 (194)
.+ +. ..+....+...++++.|.++|+|+++++|.+|.+|+..+.+.....+..+||.|.+.+|+|+...+
T Consensus 78 lL~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g 157 (428)
T KOG2668|consen 78 LLLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPG 157 (428)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccc
Confidence 21 11 123456777889999999999999999999999999999999999999999999999999999766
Q ss_pred -HHHHHHHHHHHHHHhhhhcceeccccc
Q 029372 156 -HVKRAMNEINAGMMCASFGIIVYFSHL 182 (194)
Q Consensus 156 -~i~~a~~~~~~A~~~~~a~ii~A~~~~ 182 (194)
+|..++.+...|+-+++|+|-.|++.-
T Consensus 158 ~~YlssLGka~taev~rdArIgvAEAk~ 185 (428)
T KOG2668|consen 158 HEYLSSLGKATTAEVARDARIGVAEAKR 185 (428)
T ss_pred hHHHHHhhhHHHHHHHhhcccchHHhhh
Confidence 799999999999999999998887653
No 25
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=99.59 E-value=8.1e-15 Score=114.97 Aligned_cols=156 Identities=13% Similarity=0.212 Sum_probs=119.1
Q ss_pred eeEEEEecCCeeEEEeecCeee-eeeCCcceeecCccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEE--EEEEEEc
Q 029372 4 ALGCIQVDQSTVAIKETFGKFD-DVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVA--SVQYRAL 79 (194)
Q Consensus 4 ~~~~~~V~~ge~~Vv~~~Gk~~-~~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~--~v~yrV~ 79 (194)
+++++.|++|++||.+|.|... .+.+||+|+..||+ ..+. .+-+..|+=++.. .|-|+.|+.+..+- +++|-..
T Consensus 20 ~s~vHkieEGHvgvYyRGGALL~~~t~PG~Hl~lPFi-Tt~k-sVQvTLQTDev~nvPCGTsGGVlIyfdrIEVVN~L~~ 97 (322)
T KOG2962|consen 20 SSAVHKIEEGHVGVYYRGGALLTSITGPGFHLMLPFI-TTYK-SVQVTLQTDEVKNVPCGTSGGVLIYFDRIEVVNFLRP 97 (322)
T ss_pred HHHHhhcccCceEEEEecceeeeccCCCCcEEEeeee-ecee-eeEEEeeccccccCCCCCCCcEEEEEehhhhhhhhch
Confidence 4567899999999999999976 66899999999998 5453 5555556655555 58999998877641 1122111
Q ss_pred ccchhhhcccc-cCh-HHHHHHHHHHHHHHHccCCCHHHHH-hcHHHHHHHHHHHHHHHhccc--CeEEEEEEEeecCCC
Q 029372 80 AEKASDAFYKL-SNT-RSQIQAYVFDVIRASVPKLDLDATF-EQKNDIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPD 154 (194)
Q Consensus 80 d~~~~~~~~~~-~~~-~~~l~~~~~~~lr~~i~~~~~~~l~-~~R~~l~~~i~~~l~~~~~~~--Gi~v~~v~i~~i~~p 154 (194)
| ..+..+.++ .|+ ..+|.+-+...+.+.|+..++.+++ .--+++.+.++++|++.+..+ |+.|.+|.++....|
T Consensus 98 d-~Vydiv~NYtvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIP 176 (322)
T KOG2962|consen 98 D-AVYDIVKNYTVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIP 176 (322)
T ss_pred h-HHHHHHHHcccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCCh
Confidence 1 122222222 233 5678888999999999999999999 678999999999999999887 999999999999999
Q ss_pred HHHHHHHH
Q 029372 155 EHVKRAMN 162 (194)
Q Consensus 155 ~~i~~a~~ 162 (194)
..++..++
T Consensus 177 EaiRrN~E 184 (322)
T KOG2962|consen 177 EAIRRNFE 184 (322)
T ss_pred HHHHHhHH
Confidence 99876554
No 26
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=99.58 E-value=5.2e-13 Score=105.94 Aligned_cols=157 Identities=19% Similarity=0.257 Sum_probs=122.2
Q ss_pred EEEEecCCeeEEEeecCeeeeeeCCcceee----cCcc--------------ceeEeEeeeeEEEE---eeccCcc--cc
Q 029372 6 GCIQVDQSTVAIKETFGKFDDVLEPGCHCL----PWCL--------------GSQVAGQLSLRVQQ---LDVRCET--KT 62 (194)
Q Consensus 6 ~~~~V~~ge~~Vv~~~Gk~~~~l~pGl~~~----~P~~--------------~~~v~~~~~~r~~~---~~~~~~v--~T 62 (194)
|-.+|++||.||.++-|+...+.+||.|-+ .|++ ...| |.++++... +-.+..+ ..
T Consensus 15 S~LiV~egQ~Avfv~~G~i~d~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eV-yFvn~~~~~~~kwGT~~pi~~~D 93 (211)
T PF13421_consen 15 SQLIVREGQCAVFVNDGKIADVFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEV-YFVNTKEITNIKWGTPNPIPYRD 93 (211)
T ss_pred CEEEECCCCEEEEEECCEEEEEecCceEEEecCCchHHHHHhhhccCCCCCceEEE-EEEECeEecCCccCCCCCeeecC
Confidence 778999999999999999989999999986 3333 1223 577776643 2222222 22
Q ss_pred CC--CcEEEEEEEEEEEEcccchhhhcccc---------cChHHHHHHHHHHHHHHHcc--CCCHHHHHhcHHHHHHHHH
Q 029372 63 KD--NVFVNVVASVQYRALAEKASDAFYKL---------SNTRSQIQAYVFDVIRASVP--KLDLDATFEQKNDIAKAVE 129 (194)
Q Consensus 63 kD--~~~v~v~~~v~yrV~d~~~~~~~~~~---------~~~~~~l~~~~~~~lr~~i~--~~~~~~l~~~R~~l~~~i~ 129 (194)
.+ .+++...+.+.|||.| |..++.++ ++..+.+++.+...+-+.++ +.++.++-++-.+|++.++
T Consensus 94 ~~~~~v~lra~G~ys~rI~D--p~~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~~~ 171 (211)
T PF13421_consen 94 PEYGPVRLRAFGTYSFRIVD--PVLFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEALK 171 (211)
T ss_pred CCCCcEEEEEEEEEEEEEeC--HHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 22 3577889999999997 88876543 23356677777777777775 4788999999999999999
Q ss_pred HHHHHHhcccCeEEEEEEEeecCCCHHHHHHHHHHH
Q 029372 130 EELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEIN 165 (194)
Q Consensus 130 ~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~ 165 (194)
+.|+..++.||+++.++.|.+|.+|++.+++++++.
T Consensus 172 ~~l~~~~~~~Gi~l~~f~I~~i~~pee~~~~i~~~~ 207 (211)
T PF13421_consen 172 EKLNPEFERYGIELVDFGIESISFPEEVQKAIDKRA 207 (211)
T ss_pred HHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHHHH
Confidence 999999999999999999999999999999998854
No 27
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=99.12 E-value=5.4e-09 Score=84.62 Aligned_cols=156 Identities=11% Similarity=0.127 Sum_probs=118.7
Q ss_pred EEEEecCCeeEEEeecCeeeeeeC-Ccceee-------------------cCccceeEeEeeeeEEEE-eeccC----cc
Q 029372 6 GCIQVDQSTVAIKETFGKFDDVLE-PGCHCL-------------------PWCLGSQVAGQLSLRVQQ-LDVRC----ET 60 (194)
Q Consensus 6 ~~~~V~~ge~~Vv~~~Gk~~~~l~-pGl~~~-------------------~P~~~~~v~~~~~~r~~~-~~~~~----~v 60 (194)
|..+|.|++-++...-|+...+.. +|.+-+ .|+- +.| |.++++.+. +.+-. .+
T Consensus 40 s~l~Vrp~qmamfvn~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k-~eV-yfvntqe~~girwGT~qpin~ 117 (345)
T COG4260 40 SILHVRPNQMAMFVNGGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFK-QEV-YFVNTQEIKGIRWGTPQPINY 117 (345)
T ss_pred cEEEEecCceEEEEcCCEEEeeecCCceeEeeecccchhhhhhcceecCCCccc-ceE-EEEecceecceecCCCCCeec
Confidence 778999999999999999887764 775432 2332 334 678887765 33321 23
Q ss_pred cc-CC--CcEEEEEEEEEEEEcccchhhhcc---------cccChHHHHHHHHHHHHHHHccCC--CHHHHHhcHHHHHH
Q 029372 61 KT-KD--NVFVNVVASVQYRALAEKASDAFY---------KLSNTRSQIQAYVFDVIRASVPKL--DLDATFEQKNDIAK 126 (194)
Q Consensus 61 ~T-kD--~~~v~v~~~v~yrV~d~~~~~~~~---------~~~~~~~~l~~~~~~~lr~~i~~~--~~~~l~~~R~~l~~ 126 (194)
.. ++ ...++...++.|+|.| |..++- .++|.++++-+.+..+|...++++ ++..|-++.-+|++
T Consensus 118 ~dn~~~g~l~lRa~Gtys~kvtD--pi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~ltan~~elsk 195 (345)
T COG4260 118 FDNFYNGELFLRAHGTYSIKVTD--PILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLTANQMELSK 195 (345)
T ss_pred ccccccceeEEeecceEEEEecC--HHHHHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhhhhhHHHHHH
Confidence 33 34 3466778999999997 777643 234556777788888888877765 44466689999999
Q ss_pred HHHHHHHHHhcccCeEEEEEEEeecCCCHHHHHHHHHHH
Q 029372 127 AVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEIN 165 (194)
Q Consensus 127 ~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~ 165 (194)
.+.+.|.+.+..+|..|+++.|-+|++|.+.++.+++++
T Consensus 196 ~m~e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin~r~ 234 (345)
T COG4260 196 YMAEVLDEQWTQYGMAVDSFQVASISYPDESQALINMRN 234 (345)
T ss_pred HHHHHHhHHHHhhCceEeeEEEEEecCcHHHHHHHHhhc
Confidence 999999999999999999999999999999999999864
No 28
>PTZ00491 major vault protein; Provisional
Probab=97.63 E-value=0.002 Score=59.90 Aligned_cols=173 Identities=16% Similarity=0.123 Sum_probs=113.7
Q ss_pred EEecCCeeEEEeec--CeeeeeeCCcceeecCccceeEeEeeeeEE---------EE--eec-c---C---ccccCCCcE
Q 029372 8 IQVDQSTVAIKETF--GKFDDVLEPGCHCLPWCLGSQVAGQLSLRV---------QQ--LDV-R---C---ETKTKDNVF 67 (194)
Q Consensus 8 ~~V~~ge~~Vv~~~--Gk~~~~l~pGl~~~~P~~~~~v~~~~~~r~---------~~--~~~-~---~---~v~TkD~~~ 67 (194)
|.||.+.+.=+|.+ ++..-+++|-+.++-|- +... .+++.. +. +.+ | . .+-|+|...
T Consensus 465 ~~vphn~avqvydyk~~~~Rvv~GP~~v~L~pd--E~ft-vlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhAr 541 (850)
T PTZ00491 465 YKVPHNAAVQLYDYKTKKSRVVFGPDLVMLEPD--EEFT-VLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHAR 541 (850)
T ss_pred EEcCCCcEEEEEEcccCceEEEECCceEEecCC--CceE-EEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccce
Confidence 56777776667665 55445689999999884 2221 333211 11 111 1 1 478999999
Q ss_pred EEEEEEEEEEEc--ccchh--hhcccccChHHHHHHHHHHHHHHHccCCCHHHHHhcH-HHHHHHHHHH------HHH--
Q 029372 68 VNVVASVQYRAL--AEKAS--DAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQK-NDIAKAVEEE------LEK-- 134 (194)
Q Consensus 68 v~v~~~v~yrV~--d~~~~--~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R-~~l~~~i~~~------l~~-- 134 (194)
+.+..+++|+-. +.||. ...|++.|+-...=..+.+-+|..+++.++++++.+= .-+-+.+... .+.
T Consensus 542 L~l~LsYnW~F~v~~~d~~~~~k~Fsv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~l 621 (850)
T PTZ00491 542 LALQLSYNWYFDVTDGNPEDAQKCFSVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDSL 621 (850)
T ss_pred EEEEEEEEEEEecCCCChhhHhheeccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccce
Confidence 999999998887 22353 5678899987777788888899999999999998532 2233333321 111
Q ss_pred HhcccCeEEEEEEEeecCC-CHHHHHHHHH-------------HHHHHHhhhhcceecccccc
Q 029372 135 AMSHYGYEIVQTLIVDIEP-DEHVKRAMNE-------------INAGMMCASFGIIVYFSHLT 183 (194)
Q Consensus 135 ~~~~~Gi~v~~v~i~~i~~-p~~i~~a~~~-------------~~~A~~~~~a~ii~A~~~~~ 183 (194)
.+...|+.|.+|.|+++.| +..+++++++ .+.|++++++.-.+|.|+++
T Consensus 622 ~F~~N~lvit~VDvqsvEpvD~~tr~~LqkSVqlAiEItt~sqEa~A~h~a~~~eQea~g~Le 684 (850)
T PTZ00491 622 RFPANNLVITNVDVQSVEPVDERTRDSLQKSVQLAIEITTKSQEAAARHQAELLEQEARGRLE 684 (850)
T ss_pred EEccCCeEEEEEeeeeeeecCHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHhhchhH
Confidence 2466699999999999997 4555665544 34555666666666776653
No 29
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=96.73 E-value=0.011 Score=48.25 Aligned_cols=102 Identities=21% Similarity=0.252 Sum_probs=71.5
Q ss_pred eEEEEeeccC-ccccCCCcEEEEEEEEEEEEcccchhhhcccccChHHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHH
Q 029372 49 LRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKA 127 (194)
Q Consensus 49 ~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~ 127 (194)
.....++.|. ....|||..+.+.+.+..|-+ . .-+......+..+.+.-++.+..+=+.-+..+++++-+.+++.
T Consensus 122 VnPkVI~~P~i~aVAkdGIql~~kArVTVRaN---i-~rLVGGAgEeTIiARVGEgIVttiGSa~~hk~VLEnPd~ISk~ 197 (316)
T PF12127_consen 122 VNPKVIDTPTIAAVAKDGIQLKVKARVTVRAN---I-DRLVGGAGEETIIARVGEGIVTTIGSAESHKEVLENPDSISKT 197 (316)
T ss_pred cCCeeecCcchhhhhcCCeEEEEEEEEEEEec---H-HHhccCCCcHHHHHHHccceeeeeccchhHHHHhcCHHHHHHH
Confidence 3344455555 567899999888888877765 2 2333434455666666666666665666888999999999988
Q ss_pred HHHHHHHHhcc-cCeEEEEEEEeecCCCHHH
Q 029372 128 VEEELEKAMSH-YGYEIVQTLIVDIEPDEHV 157 (194)
Q Consensus 128 i~~~l~~~~~~-~Gi~v~~v~i~~i~~p~~i 157 (194)
+.+. -++. --+++.|+.|-|++.-+++
T Consensus 198 VL~k---gLDagTAFeIlSIDIaDidVG~NI 225 (316)
T PF12127_consen 198 VLEK---GLDAGTAFEILSIDIADIDVGENI 225 (316)
T ss_pred HHhh---CCCcCceeEEEEeeeeccccchhh
Confidence 8655 3332 2499999999999998775
No 30
>PRK13665 hypothetical protein; Provisional
Probab=95.15 E-value=0.033 Score=45.46 Aligned_cols=102 Identities=16% Similarity=0.202 Sum_probs=66.4
Q ss_pred eEEEEeeccC-ccccCCCcEEEEEEEEEEEEcccchhhhcccccChHHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHH
Q 029372 49 LRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKA 127 (194)
Q Consensus 49 ~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~ 127 (194)
+....++.|. ....|||..+.+.+.+..|-+ ..+ +.....-+..+.+.-++.+..+=+.-+..+++++-+.+++.
T Consensus 127 VnPkVI~~P~i~aVAkdGIql~~kARVTVRaN---i~r-LVGGAgEeTIiARVGEgIVttIGSa~~hk~VLEnPd~ISk~ 202 (316)
T PRK13665 127 VNPKVIETPFIAAVAKDGIEVKAKARVTVRAN---IDR-LVGGAGEETIIARVGEGIVSTIGSSESHKEVLENPDSISKT 202 (316)
T ss_pred cCCeeecCCcchhhcccCeEEEEEEEEEeehh---HHH-HhCCCcceeeEeeecCceeecccCcchHHHHhcCHHHHHHH
Confidence 3344455555 567899988888777776644 222 22222334444455555555555556788999999999976
Q ss_pred HHHHHHHHhcc-cCeEEEEEEEeecCCCHHH
Q 029372 128 VEEELEKAMSH-YGYEIVQTLIVDIEPDEHV 157 (194)
Q Consensus 128 i~~~l~~~~~~-~Gi~v~~v~i~~i~~p~~i 157 (194)
+.+. -++. --+++.|+.|-|++..+++
T Consensus 203 VL~k---GLDagTAFeIlSIDIADvdVG~NI 230 (316)
T PRK13665 203 VLSK---GLDAGTAFEILSIDIADVDVGKNI 230 (316)
T ss_pred HHhc---cCCcCceeEEEEEeeeccccchhh
Confidence 6443 3543 2499999999999998775
No 31
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=95.11 E-value=0.22 Score=35.70 Aligned_cols=95 Identities=15% Similarity=0.228 Sum_probs=63.2
Q ss_pred ccccCCCcEEEEEEEEEEEEcc--cchh--hhcccccChHHHHHHHHHHHHHHHccCCCHHHHHhcHHH-HHHHH-----
Q 029372 59 ETKTKDNVFVNVVASVQYRALA--EKAS--DAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKND-IAKAV----- 128 (194)
Q Consensus 59 ~v~TkD~~~v~v~~~v~yrV~d--~~~~--~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~-l~~~i----- 128 (194)
.+-|+|...+.+..+++|+-.- .++. ...+++.|+-.-.=..+.+-+|..+++.+.++.+.+=.. +.+.+
T Consensus 10 ~VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~ 89 (118)
T PF11978_consen 10 TVETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDE 89 (118)
T ss_dssp EEE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS--
T ss_pred EEeecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCC
Confidence 4679999999999998888763 1233 457888898776667777888999999999998853222 11111
Q ss_pred HHHHHH--HhcccCeEEEEEEEeecCC
Q 029372 129 EEELEK--AMSHYGYEIVQTLIVDIEP 153 (194)
Q Consensus 129 ~~~l~~--~~~~~Gi~v~~v~i~~i~~ 153 (194)
...++. .+..-|+.|.+|.|+++.|
T Consensus 90 ~~~~r~~~~F~~N~LvIt~vDvqsvEp 116 (118)
T PF11978_consen 90 NGEVRDGLRFPANNLVITSVDVQSVEP 116 (118)
T ss_dssp -E--SS-EEETTTTEEEEEEEEEEEEE
T ss_pred CCCccceeEEcCCCeEEEEEeeeEecc
Confidence 111121 2455699999999999875
No 32
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=94.85 E-value=0.36 Score=36.67 Aligned_cols=80 Identities=6% Similarity=0.041 Sum_probs=61.8
Q ss_pred CcEEEEEEEEEEEEcccchhhhcccccChHHHHHHHHHHHHHHHccCCCHHHHHh--cHHHHHHHHHHHHHHHhcccCeE
Q 029372 65 NVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHYGYE 142 (194)
Q Consensus 65 ~~~v~v~~~v~yrV~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~--~R~~l~~~i~~~l~~~~~~~Gi~ 142 (194)
+...-+.+.+.|++.|+.....+ ++ =.+.+++++...+++.+.+++.+ .+++|-+++++.+|..+..=+ .
T Consensus 76 ~~~~~v~i~i~l~~~n~~~~~el------~~-~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~-~ 147 (159)
T COG1580 76 PKDRYVKIAITLEVANKALLEEL------EE-KKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ-V 147 (159)
T ss_pred CCcEEEEEEEEEeeCCHHHHHHH------HH-hhHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC-e
Confidence 55667888899999873211111 11 23678899999999999999994 899999999999999997744 8
Q ss_pred EEEEEEeecC
Q 029372 143 IVQTLIVDIE 152 (194)
Q Consensus 143 v~~v~i~~i~ 152 (194)
|++|.++++.
T Consensus 148 V~dV~fT~fi 157 (159)
T COG1580 148 VKDVLFTNFI 157 (159)
T ss_pred eEEEeeehhh
Confidence 8999888764
No 33
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=91.45 E-value=1.1 Score=30.66 Aligned_cols=51 Identities=12% Similarity=0.216 Sum_probs=43.0
Q ss_pred HHHHHHHHHHccCCCHHHHH--hcHHHHHHHHHHHHHHHhcccCeEEEEEEEeec
Q 029372 99 AYVFDVIRASVPKLDLDATF--EQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDI 151 (194)
Q Consensus 99 ~~~~~~lr~~i~~~~~~~l~--~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i 151 (194)
+.++..+...+++++.+++. ..+..+.+++++.+++.+.+ -.|.+|.++++
T Consensus 44 ~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~--~~V~~V~ft~f 96 (99)
T PF03748_consen 44 PRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGK--GKVKDVYFTDF 96 (99)
T ss_pred HHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhcc--CcEEEEEEEEE
Confidence 56788888889999999999 58999999999999998854 34888888775
No 34
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=90.21 E-value=1.1 Score=33.24 Aligned_cols=51 Identities=12% Similarity=0.267 Sum_probs=43.4
Q ss_pred HHHHHHHHHHccCCCHHHHH--hcHHHHHHHHHHHHHHHhcccCeEEEEEEEeec
Q 029372 99 AYVFDVIRASVPKLDLDATF--EQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDI 151 (194)
Q Consensus 99 ~~~~~~lr~~i~~~~~~~l~--~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i 151 (194)
+.++..+-..+++.+.+|+- +.++.+.+++++.+|..+.+ | .|.+|.++++
T Consensus 87 p~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~f 139 (142)
T PRK07718 87 FQVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITSF 139 (142)
T ss_pred hhhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEee
Confidence 46777888888999999998 48999999999999998876 5 6888888875
No 35
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=88.05 E-value=6.5 Score=30.50 Aligned_cols=83 Identities=13% Similarity=0.161 Sum_probs=56.4
Q ss_pred cccCCC--cEEEEEEEEEEEEcccchhhhcccccChHHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHHHHHHHHHHhc
Q 029372 60 TKTKDN--VFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMS 137 (194)
Q Consensus 60 v~TkD~--~~v~v~~~v~yrV~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~i~~~l~~~~~ 137 (194)
+.+.|. ....+..++.|...+++ ..- ..+ .=.+.++..+...+++.+.+|+. .+.+|.+++++.+|..+.
T Consensus 93 vNLaD~~~~r~~vki~l~~e~~d~~---l~~---EL~-~r~pqIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~iL~ 164 (181)
T PRK06654 93 GNTADTPPKTFVVKLALGYAENNKN---ILN---ELG-RRKVRLKDIIREYFSQKTGQELK-NESQIKAEIKARINSILR 164 (181)
T ss_pred EEcCCCCCceEEEEEEEEEEcCCHH---HHH---HHH-hccHHHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHHhcC
Confidence 344443 44456667777665421 110 111 12356788888899999999999 889999999999999887
Q ss_pred ccCeEEEEEEEeecC
Q 029372 138 HYGYEIVQTLIVDIE 152 (194)
Q Consensus 138 ~~Gi~v~~v~i~~i~ 152 (194)
+ =.|.+|.++++.
T Consensus 165 ~--GkV~~VYFTeFv 177 (181)
T PRK06654 165 N--GEIKDIAFTQID 177 (181)
T ss_pred C--CceEEEEEEEEE
Confidence 5 347777777654
No 36
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated
Probab=87.29 E-value=2.2 Score=31.61 Aligned_cols=53 Identities=9% Similarity=0.162 Sum_probs=44.9
Q ss_pred HHHHHHHHHHccCCCHHHHH--hcHHHHHHHHHHHHHHHhccc-C-eEEEEEEEeec
Q 029372 99 AYVFDVIRASVPKLDLDATF--EQKNDIAKAVEEELEKAMSHY-G-YEIVQTLIVDI 151 (194)
Q Consensus 99 ~~~~~~lr~~i~~~~~~~l~--~~R~~l~~~i~~~l~~~~~~~-G-i~v~~v~i~~i 151 (194)
+.++..+-..+++.+.+++. +.|+.|.+++++.++..+++- | -.|++|.++++
T Consensus 78 P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~F 134 (137)
T PRK05697 78 PLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKY 134 (137)
T ss_pred HHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeee
Confidence 66788888899999999998 599999999999999999653 3 35888888876
No 37
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=84.80 E-value=3.7 Score=31.11 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=43.6
Q ss_pred HHHHHHHHHHccCCCHHHHH--hcHHHHHHHHHHHHHHHhcccC--eEEEEEEEeec
Q 029372 99 AYVFDVIRASVPKLDLDATF--EQKNDIAKAVEEELEKAMSHYG--YEIVQTLIVDI 151 (194)
Q Consensus 99 ~~~~~~lr~~i~~~~~~~l~--~~R~~l~~~i~~~l~~~~~~~G--i~v~~v~i~~i 151 (194)
+.+++.+-..+++.+.+++. +.+..|.+++++.+++.+..-+ -.|++|.++++
T Consensus 103 p~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f 159 (162)
T PRK07021 103 PEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF 159 (162)
T ss_pred HHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence 45777778888999999998 4899999999999999886532 46888888876
No 38
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=84.50 E-value=3.8 Score=31.78 Aligned_cols=52 Identities=13% Similarity=0.239 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHccCCCHHHHH--hcHHHHHHHHHHHHHHHhcccCeEEEEEEEeec
Q 029372 98 QAYVFDVIRASVPKLDLDATF--EQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDI 151 (194)
Q Consensus 98 ~~~~~~~lr~~i~~~~~~~l~--~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i 151 (194)
.+.++.++-..+++.+.+|+. ..+..|.+++.+.+|..+.+ | .|.+|.++++
T Consensus 126 ~p~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~-g-~V~~VyFT~F 179 (182)
T PRK08455 126 DPVIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLID-G-FIKNVFFTDF 179 (182)
T ss_pred hhHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhcc-C-ceeEEEeEee
Confidence 466888888899999999999 47999999999999999976 4 5888888876
No 39
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=84.02 E-value=4 Score=31.15 Aligned_cols=51 Identities=10% Similarity=0.133 Sum_probs=42.6
Q ss_pred HHHHHHHHHHccCCCHHHHH--hcHHHHHHHHHHHHHHHhcccCeEEEEEEEeec
Q 029372 99 AYVFDVIRASVPKLDLDATF--EQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDI 151 (194)
Q Consensus 99 ~~~~~~lr~~i~~~~~~~l~--~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i 151 (194)
+.++..+-..+++.+.+|+. +.+..|.+++.+.+|..+.+ | .|++|.++++
T Consensus 111 p~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~-~-~V~~VlFt~F 163 (166)
T PRK12785 111 PRVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAP-A-QVNAVLFKEV 163 (166)
T ss_pred hHHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCC-C-ceeEEEEEee
Confidence 56777777888999999998 47999999999999998875 3 4888888876
No 40
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=82.45 E-value=4.7 Score=30.78 Aligned_cols=54 Identities=7% Similarity=0.162 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHccCCCHHHHH--hcHHHHHHHHHHHHHHHhccc-C-eEEEEEEEeec
Q 029372 98 QAYVFDVIRASVPKLDLDATF--EQKNDIAKAVEEELEKAMSHY-G-YEIVQTLIVDI 151 (194)
Q Consensus 98 ~~~~~~~lr~~i~~~~~~~l~--~~R~~l~~~i~~~l~~~~~~~-G-i~v~~v~i~~i 151 (194)
.+.+++.+-.++++.+.+++. ..++.|.+++.+.++..+++. | -.|++|.++++
T Consensus 110 ~p~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~~~g~~~V~~VlFt~f 167 (170)
T PRK05696 110 IPLIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQKVTGKPVVEKVLFTGF 167 (170)
T ss_pred hHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCceeEEeeeec
Confidence 456888888999999999998 489999999999998887654 4 36888888875
No 41
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.20 E-value=12 Score=30.02 Aligned_cols=61 Identities=20% Similarity=0.303 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHccC-CCHHHHHhcHHHHHHHHHHHHHHHhcc-cCeEEEEEEEeecCCCHHH
Q 029372 94 RSQIQAYVFDVIRASVPK-LDLDATFEQKNDIAKAVEEELEKAMSH-YGYEIVQTLIVDIEPDEHV 157 (194)
Q Consensus 94 ~~~l~~~~~~~lr~~i~~-~~~~~l~~~R~~l~~~i~~~l~~~~~~-~Gi~v~~v~i~~i~~p~~i 157 (194)
++.+...+-+.+-+.+|+ ....+++++-+.+++.+.+. -++. -.+++.++.|-|+...+.+
T Consensus 167 eetviarvgegivstigss~~h~~vlenpd~isktvl~k---gld~gtafeilsidiadvdigkni 229 (328)
T COG4864 167 EETVIARVGEGIVSTIGSSDEHTKVLENPDSISKTVLEK---GLDSGTAFEILSIDIADVDIGKNI 229 (328)
T ss_pred chhhhhhhccceeeccCCCcchhhHhcCccHHHHHHHHc---cCCCCceeEEEEeeeecccccccc
Confidence 333434444444445554 46678899998888877543 2322 2489999999999887764
No 42
>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.
Probab=43.23 E-value=1.6e+02 Score=23.06 Aligned_cols=82 Identities=22% Similarity=0.314 Sum_probs=49.0
Q ss_pred ccccCCCcEEEEEEEEEEEEcccchhhhcccccChHHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHHHHHHHHHHhcc
Q 029372 59 ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSH 138 (194)
Q Consensus 59 ~v~TkD~~~v~v~~~v~yrV~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~i~~~l~~~~~~ 138 (194)
++.|+||-.+.+...+.= .. + .-..-...|+......+.+.+++.+++++...- +.+.+.+++...+.+
T Consensus 107 dvkT~DGy~lRvf~i~fT-~~-----r---a~~sq~~~IRk~m~~ii~~~~~~~~~~e~V~~l--i~~~i~~eI~k~~k~ 175 (194)
T PF01015_consen 107 DVKTKDGYLLRVFCIAFT-KK-----R---AKSSQIKAIRKKMVEIITEEASELDLKELVKKL--IPGSIGKEIEKACKK 175 (194)
T ss_dssp EEEETTTEEEEEEEEEEE-------------TCHHHHHHHHHHHHHHHHHCCTSHHHHHHHHH--CTTHHHHHHHHHHCT
T ss_pred EEEcCCCcEEEEEEEEEE-ee-----c---ccchHHHHHHHHHHHHHHHHhccCcHHHHHHHH--ccchHHHHHHHHhcc
Confidence 577888876665332221 11 1 111235679999999999999999999999532 445555555555554
Q ss_pred cCeEEEEEEEeecC
Q 029372 139 YGYEIVQTLIVDIE 152 (194)
Q Consensus 139 ~Gi~v~~v~i~~i~ 152 (194)
. .-+.+|.|+.+.
T Consensus 176 I-yPl~~v~IrKvK 188 (194)
T PF01015_consen 176 I-YPLRNVEIRKVK 188 (194)
T ss_dssp T---EEEEEEEEEE
T ss_pred c-cccceEEEEEEE
Confidence 2 223356655543
No 43
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=36.02 E-value=97 Score=22.92 Aligned_cols=46 Identities=9% Similarity=0.190 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHHHHHHHHHHHHhhh
Q 029372 126 KAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAGMMCAS 172 (194)
Q Consensus 126 ~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~~~~~ 172 (194)
-++++.|.+.|.++|.+|.++...+-. |..|.+.-.+...+-+..+
T Consensus 11 ~~lK~~i~~~L~~~g~eV~D~G~~~~~-~~dy~~~a~~va~~V~~~~ 56 (140)
T PF02502_consen 11 FELKEAIKEYLEEKGYEVIDFGTYSED-SVDYPDFAEKVAEAVASGE 56 (140)
T ss_dssp HHHHHHHHHHHHHTTEEEEEESESSTS-T--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCCCC-CCCHHHHHHHHHHHHHccc
Confidence 356777777788889999999988765 6666665555444444433
No 44
>PRK04057 30S ribosomal protein S3Ae; Validated
Probab=33.82 E-value=2.4e+02 Score=22.32 Aligned_cols=69 Identities=14% Similarity=0.195 Sum_probs=44.6
Q ss_pred ccccCCCcEEEEEEEEEEEEcccchhhhcccccChHHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHHHHHHHHHHhcc
Q 029372 59 ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSH 138 (194)
Q Consensus 59 ~v~TkD~~~v~v~~~v~yrV~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~i~~~l~~~~~~ 138 (194)
.+.|+||-.+.+...+.-+-. .-..-...|+......+.+.+++++++++...- +...+.+++...+.+
T Consensus 101 dvkTkDGy~lRv~~i~~T~~r---------a~~sq~~~IRk~m~~~i~~~~~~~~~~e~V~~~--i~g~i~~eI~~~~k~ 169 (203)
T PRK04057 101 DVTTKDGYKVRVKPVALTTKR---------ARTSQKHAIRKIMEEIIEEKASELTFEEFVQEI--VFGKLASEIYKEAKK 169 (203)
T ss_pred EEEcCCCCEEEEEEEEEEchh---------hhhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHH--ccchHHHHHHHhhhh
Confidence 578999988777544432111 112346679999999999999999999999532 334444444444443
No 45
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=30.81 E-value=1.2e+02 Score=22.26 Aligned_cols=38 Identities=13% Similarity=0.281 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHHHHHH
Q 029372 126 KAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNE 163 (194)
Q Consensus 126 ~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~ 163 (194)
.++.-.|...++.-+=.++.+.+.+..||+++++.+++
T Consensus 9 ~rLSvdL~~qve~sd~~~~~~~vd~~~pP~el~~iLe~ 46 (132)
T PF09432_consen 9 ERLSVDLAKQVEISDPEVSEFVVDDWNPPKELQSILEK 46 (132)
T ss_pred HHHHHHHHHHhcccCCCcceeeecCCCCCHHHHHHHHH
Confidence 33444455555555667889999999999999888776
No 46
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=29.16 E-value=1e+02 Score=21.05 Aligned_cols=14 Identities=21% Similarity=0.461 Sum_probs=7.3
Q ss_pred CCCcEEEEEEEEEE
Q 029372 63 KDNVFVNVVASVQY 76 (194)
Q Consensus 63 kD~~~v~v~~~v~y 76 (194)
+++..+++.+.+.|
T Consensus 57 ~~~i~v~l~v~v~~ 70 (108)
T PF03780_consen 57 DGGITVDLHVVVEY 70 (108)
T ss_pred CcceEEEEEEEEEC
Confidence 34555555555555
No 47
>KOG4743 consensus Cyclin-dependent kinase inhibitor [Signal transduction mechanisms]
Probab=28.12 E-value=1.2e+02 Score=23.80 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=31.2
Q ss_pred HHHHHHHHccCCCHHHHHhcHHHHHHHHHHHHHHHhcccCeE
Q 029372 101 VFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYE 142 (194)
Q Consensus 101 ~~~~lr~~i~~~~~~~l~~~R~~l~~~i~~~l~~~~~~~Gi~ 142 (194)
-..+.|..+|..+-+|+-. .|+..+.+.-++..++||+.
T Consensus 15 ~~sAcR~LFGpvd~EElSR---~l~s~l~~m~~e~~~KWnFD 53 (195)
T KOG4743|consen 15 KSSACRCLFGPVDHEELSR---DLNSRLERMNEEDQQKWNFD 53 (195)
T ss_pred cchHHHHhcCCCCHHHHhH---HHHHHHHHHHHHHHhccCcc
Confidence 4578899999999988865 77778877777788888654
No 48
>PF10056 DUF2293: Uncharacterized conserved protein (DUF2293); InterPro: IPR018744 Proteins in this entry are found the bacteria and fungi, they have no known function.
Probab=28.02 E-value=1.9e+02 Score=19.48 Aligned_cols=45 Identities=13% Similarity=0.290 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHccCCCHHHHHh---cHHHHHHHHHHHHHHHhcccC
Q 029372 94 RSQIQAYVFDVIRASVPKLDLDATFE---QKNDIAKAVEEELEKAMSHYG 140 (194)
Q Consensus 94 ~~~l~~~~~~~lr~~i~~~~~~~l~~---~R~~l~~~i~~~l~~~~~~~G 140 (194)
++.+.-.+...+|..--.|+ +|+. .|++--..+.+.+++.+..||
T Consensus 39 ~~~v~lAV~AhiRH~~T~YD--~LL~~g~~R~~AR~~V~~~~~~~L~~Wr 86 (86)
T PF10056_consen 39 ERAVQLAVIAHIRHQHTDYD--RLLREGYDRDEARRFVADRVNAVLREWR 86 (86)
T ss_pred HHHHHHHHHHHHHhcCCcHH--HHHHcCCCHHHHHHHHHHHHHHHHHhhC
Confidence 45677778888888877665 7773 899999999999999998886
No 49
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []. The function of this family is unclear.; GO: 0009877 nodulation
Probab=26.15 E-value=1.4e+02 Score=23.78 Aligned_cols=29 Identities=14% Similarity=0.360 Sum_probs=25.0
Q ss_pred cChHHHHHHHHHHHHHHHccCCCHHHHHh
Q 029372 91 SNTRSQIQAYVFDVIRASVPKLDLDATFE 119 (194)
Q Consensus 91 ~~~~~~l~~~~~~~lr~~i~~~~~~~l~~ 119 (194)
...++.|.+++-.++|.++|.|+.++++.
T Consensus 89 a~LE~~l~~LVl~~Vr~ILg~fd~~ell~ 117 (207)
T PF06635_consen 89 AGLEQELAELVLEIVRKILGEFDPDELLV 117 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 34578899999999999999999988773
No 50
>PRK14539 50S ribosomal protein L11/unknown domain fusion protein; Provisional
Probab=24.64 E-value=74 Score=25.02 Aligned_cols=40 Identities=20% Similarity=0.196 Sum_probs=22.3
Q ss_pred HHHccCCCHHHHHh----cHHH-HHHHHHH---HHHHHhcccCeEEEE
Q 029372 106 RASVPKLDLDATFE----QKND-IAKAVEE---ELEKAMSHYGYEIVQ 145 (194)
Q Consensus 106 r~~i~~~~~~~l~~----~R~~-l~~~i~~---~l~~~~~~~Gi~v~~ 145 (194)
++.+|+.++++++. .... ....+.. .+--.+...||.|+.
T Consensus 91 k~~vG~Itl~qv~eIAk~K~~Dl~~~~Le~avK~VlGTArSMGI~Veg 138 (196)
T PRK14539 91 TTIVGTITLSQLEEIAKYKLPDLNTDDVEEAMHTIAGTAKNMGVLVEG 138 (196)
T ss_pred CeEEEEecHHHHHHHHHHHhhhhCCCcHHHHHHHHHhhheeCeEEEEc
Confidence 34567788887773 1111 1122222 233456778999976
No 51
>PF08751 TrwC: TrwC relaxase; InterPro: IPR014862 Relaxases are DNA strand transferases which function during the conjugative cell to cell DNA transfer. TrwC binds to the origin of transfer (oriT) and melts the double helix. ; PDB: 1ZM5_A 1S6M_A 1OSB_C 2CDM_C 1OMH_A 1QX0_A 3L57_A 3L6T_A 2A0I_A 2Q7U_A ....
Probab=24.09 E-value=1e+02 Score=25.78 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=38.4
Q ss_pred CCCHHHHHhcHHHHHHHHHHHHHHHhcccCeEEEEEE-----Eeec-CCCHHHHHHHHHHHHH
Q 029372 111 KLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTL-----IVDI-EPDEHVKRAMNEINAG 167 (194)
Q Consensus 111 ~~~~~~l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~-----i~~i-~~p~~i~~a~~~~~~A 167 (194)
.++...|+..+..+..--...|...+.+.|++++... .-+| .+|+++.+++.++-.+
T Consensus 181 ald~~~l~~~~~~~~~~y~~~La~~l~~lG~~~~~~~~~~~~~~eI~Gi~~e~~~~FS~R~~q 243 (296)
T PF08751_consen 181 ALDNRELYRNQKAAGAIYRAELAHELRELGYEIEETEEGKGGAFEIAGIPRELIEAFSKRRQQ 243 (296)
T ss_dssp -SCTHHHHCTHHHHHHHHHHHHHHHHHHTT--EEE-CECCTCEEEETTS-HHHHHCCSHHHHH
T ss_pred ecchHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeeccCCCCeeEEcCCCHHHHHHhCcHHHH
Confidence 3455588888888888888899999999999998542 1233 4688888888765443
No 52
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=23.10 E-value=2.8e+02 Score=26.02 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=26.6
Q ss_pred HHHHHH-HhcccCeEEEEEE----EeecCCCHHHHHHHHHHHHHHH
Q 029372 129 EEELEK-AMSHYGYEIVQTL----IVDIEPDEHVKRAMNEINAGMM 169 (194)
Q Consensus 129 ~~~l~~-~~~~~Gi~v~~v~----i~~i~~p~~i~~a~~~~~~A~~ 169 (194)
-+.|++ .|...||.|++-. +-....|.+++...+++...+.
T Consensus 520 ~D~iRd~~L~~~Gi~l~D~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 565 (651)
T PTZ00399 520 CDKLRDEWLPNLGIRIEDKPDGPSVWKLDDKEELQREKEEKEALKE 565 (651)
T ss_pred HHHHHHHHHHHCCCEEEEcCCCceEEEECCHHHHHHHHHHHHHHHH
Confidence 456777 5888999999852 2234456777777776544333
No 53
>TIGR01608 citD citrate lyase acyl carrier protein. This is a model of the acyl carrier protein (aka gamma subunit) of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The acyl carrier protein covalently binds the coenzyme of citrate lyase. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=21.58 E-value=1.9e+02 Score=19.88 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhcccCeEEEEEEEee
Q 029372 122 NDIAKAVEEELEKAMSHYGYEIVQTLIVD 150 (194)
Q Consensus 122 ~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~ 150 (194)
.+|.++|++.+.+.++++||+=-.+.+.|
T Consensus 39 kQfG~~Ir~~v~etL~~lgV~~~~v~v~D 67 (92)
T TIGR01608 39 KQFGDDIESTVKETLKLLGVENAVVKVVD 67 (92)
T ss_pred HHHhHHHHHHHHHHHHHcCCceEEEEEEe
Confidence 46778888888889999988766666665
No 54
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=20.68 E-value=90 Score=23.19 Aligned_cols=30 Identities=17% Similarity=0.344 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcccCeEEEEEEEeecCCCH
Q 029372 126 KAVEEELEKAMSHYGYEIVQTLIVDIEPDE 155 (194)
Q Consensus 126 ~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~ 155 (194)
-++++.|.+.|.+.|.+|.++.-.+.++|.
T Consensus 12 ~~lK~~l~~~L~~~g~eV~D~G~~~~dypd 41 (141)
T PRK12613 12 NALKELIKSFLQEEGYDIIDVTDINSDFID 41 (141)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCCCCCChHH
Confidence 357778888888899999988865555554
Done!