Query 029372
Match_columns 194
No_of_seqs 129 out of 1092
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 19:27:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029372.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029372hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fvg_A Stomatin; mixed alpha-b 100.0 5.8E-30 2E-34 188.5 11.8 130 34-167 3-133 (133)
2 3bk6_A PH stomatin; archaea, t 100.0 7.1E-30 2.4E-34 198.3 11.8 142 38-183 2-144 (188)
3 1win_A Flotillin 2; BAND 7 dom 99.9 4.7E-26 1.6E-30 169.6 3.7 130 38-170 3-141 (143)
4 2rpb_A Hypothetical membrane p 99.9 6E-24 2E-28 151.8 8.9 109 46-156 4-113 (113)
5 2zuo_A MVP, major vault protei 97.9 0.00027 9.2E-09 64.4 14.7 154 8-162 460-655 (861)
6 2xzm_4 40S ribosomal protein S 68.3 26 0.00089 27.7 8.0 89 59-150 129-220 (265)
7 3u5c_B RP10A, 40S ribosomal pr 54.8 27 0.00092 27.5 5.9 75 59-133 126-202 (255)
8 2acm_B Mucin-1; auto-catalytic 48.8 22 0.00075 21.1 3.4 22 135-156 31-52 (55)
9 2yfv_C SCM3, KLLA0F05115P; cel 27.3 49 0.0017 20.0 2.5 32 109-140 15-46 (63)
10 3mhs_B Protein SUS1; multi-pro 20.7 1.2E+02 0.0042 19.8 3.9 38 94-132 39-81 (96)
11 3l6t_A TRAI, mobilization prot 20.6 1E+02 0.0034 24.8 4.0 56 111-166 181-240 (302)
No 1
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.96 E-value=5.8e-30 Score=188.51 Aligned_cols=130 Identities=22% Similarity=0.304 Sum_probs=106.2
Q ss_pred eecCccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEEEEEEEEcccchhhhcccccChHHHHHHHHHHHHHHHccCC
Q 029372 34 CLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKL 112 (194)
Q Consensus 34 ~~~P~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~ 112 (194)
+..||+ +++. ++|+|.+++++++ +++|+|++.+.|++.++|||.| |.+|++++.|++..+.++++++||+++|++
T Consensus 3 l~~P~i-d~v~-~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~D--p~~~~~~v~~~~~~l~~~~~~~lR~vig~~ 78 (133)
T 4fvg_A 3 LGSPST-DSAA-KVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQN--ATLAVANITNADSATRLLAQTTLRNALGTK 78 (133)
T ss_dssp -------------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESC--HHHHHHSSSCHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCce-eEEE-EEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEee--hHHhHhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 567998 6674 8999999999998 6999999999999999999997 999999999999999999999999999999
Q ss_pred CHHHHHhcHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHHHHHHHHHH
Q 029372 113 DLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAG 167 (194)
Q Consensus 113 ~~~~l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A 167 (194)
++++++++|++++.++++.+++.+++|||+|.+++|+++.||+++++||+++++|
T Consensus 79 ~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~~A 133 (133)
T 4fvg_A 79 NLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEA 133 (133)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC-----------
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999988776
No 2
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.96 E-value=7.1e-30 Score=198.29 Aligned_cols=142 Identities=22% Similarity=0.261 Sum_probs=135.1
Q ss_pred ccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEEEEEEEEcccchhhhcccccChHHHHHHHHHHHHHHHccCCCHHH
Q 029372 38 CLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDA 116 (194)
Q Consensus 38 ~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~ 116 (194)
|+ +++ ..+|+|.+++++++ +++|+|+++|.++++++|||.| |.++++++.|+...+.+++++++|+++|++++++
T Consensus 2 fi-~~v-~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~d--p~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~e 77 (188)
T 3bk6_A 2 IF-EKA-VIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVD--PVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDE 77 (188)
T ss_dssp CE-EEC-CCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESC--HHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred ce-EEE-EEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECC--HHHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHH
Confidence 44 556 48999999999988 6999999999999999999997 8899999999999999999999999999999999
Q ss_pred HHhcHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHHHHHHHHHHHHhhhhcceecccccc
Q 029372 117 TFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAGMMCASFGIIVYFSHLT 183 (194)
Q Consensus 117 l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~~~~~a~ii~A~~~~~ 183 (194)
++++|++++..+++.+++.+++|||.|+++.|+++.||+++.+||+++++|+++++|++++|+|+.+
T Consensus 78 ll~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Aege~~ 144 (188)
T 3bk6_A 78 LLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQ 144 (188)
T ss_dssp HHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999865
No 3
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.92 E-value=4.7e-26 Score=169.55 Aligned_cols=130 Identities=16% Similarity=0.242 Sum_probs=113.7
Q ss_pred ccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEEEEEEEEcccchhhhccccc--------ChHHHHHHHHHHHHHHH
Q 029372 38 CLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLS--------NTRSQIQAYVFDVIRAS 108 (194)
Q Consensus 38 ~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~~~~~~~~~~~--------~~~~~l~~~~~~~lr~~ 108 (194)
|+ +.+. .+|+|++++++++ +++|+|+.++.|++.++|||.| +|.++.+... +.+..+.++++++||++
T Consensus 3 ~i-~~v~-~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~d-d~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~v 79 (143)
T 1win_A 3 SG-SSGQ-RISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMT-EKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSI 79 (143)
T ss_dssp CC-CCCC-SCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECC-CSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cc-eEEE-EEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECC-CHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 45 5564 8999999999998 5999999999999999999985 2665544332 23567889999999999
Q ss_pred ccCCCHHHHHhcHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHHHHHHHHHHHHh
Q 029372 109 VPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAGMMC 170 (194)
Q Consensus 109 i~~~~~~~l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~~~ 170 (194)
+|++++++++++|++|+..+.+.+++.+++|||+|.+++|+|+.+|+++++||+++++|+..
T Consensus 80 iG~~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~Ae~~ 141 (143)
T 1win_A 80 LGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSGPS 141 (143)
T ss_dssp HHHSCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCCCC
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999887766643
No 4
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.90 E-value=6e-24 Score=151.85 Aligned_cols=109 Identities=30% Similarity=0.440 Sum_probs=105.2
Q ss_pred eeeeEEEEeeccC-ccccCCCcEEEEEEEEEEEEcccchhhhcccccChHHHHHHHHHHHHHHHccCCCHHHHHhcHHHH
Q 029372 46 QLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDI 124 (194)
Q Consensus 46 ~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l 124 (194)
.+|+|.+.+++++ +++|+|++.+.+++.++|||.| |.++++++.|++..+.+.+++++|+++|++++++++++|+++
T Consensus 4 ~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~d--p~~~~~~v~~~~~~l~~~~~~~lR~vig~~~l~ei~~~R~~i 81 (113)
T 2rpb_A 4 HVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVID--PVKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETLSGRDII 81 (113)
T ss_dssp CCCCCCEEEECCCEEEECTTSCEEEECEEEEEEESC--TTTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTTHHHHCHHHH
T ss_pred EEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEECC--HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCcHHHHHhCHHHH
Confidence 6899999999998 7999999999999999999997 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCeEEEEEEEeecCCCHH
Q 029372 125 AKAVEEELEKAMSHYGYEIVQTLIVDIEPDEH 156 (194)
Q Consensus 125 ~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~ 156 (194)
++.+++.+++.+++|||+|.++.|+++.||++
T Consensus 82 ~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e 113 (113)
T 2rpb_A 82 NARLREELDKITDRWGVKITRVEIQRIDPPKD 113 (113)
T ss_dssp HHHHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred HHHHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence 99999999999999999999999999999974
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=97.92 E-value=0.00027 Score=64.38 Aligned_cols=154 Identities=14% Similarity=0.155 Sum_probs=101.5
Q ss_pred EEecCCeeEEEeec--CeeeeeeCCcceeecCccceeEeEeee---------eEEEEeeccC-------ccccCCCcEEE
Q 029372 8 IQVDQSTVAIKETF--GKFDDVLEPGCHCLPWCLGSQVAGQLS---------LRVQQLDVRC-------ETKTKDNVFVN 69 (194)
Q Consensus 8 ~~V~~ge~~Vv~~~--Gk~~~~l~pGl~~~~P~~~~~v~~~~~---------~r~~~~~~~~-------~v~TkD~~~v~ 69 (194)
|.||.+.+.-++.+ |+..-+++|-+.++-|- ++.....+| .+.-.+.+.+ .+-|+|...+.
T Consensus 460 ~rvphnaaVqvyDy~~~~~RvvfGP~lv~L~Pd-E~ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhArL~ 538 (861)
T 2zuo_A 460 YRVPHNAAVQVYDYRAKRARVVFGPELVTLDPE-EQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARLQ 538 (861)
T ss_dssp EECCTTEEEEEECSSSCCEEEECSSCEEECCSS-CEECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCEEE
T ss_pred EEcCCCeEEEEEecCCCceEEEECCcEEEECCC-ccEEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceEEE
Confidence 56888888888886 55445689999888774 222211222 1111222221 57899999999
Q ss_pred EEEEEEEEEc--c-cchh--hhcccccChHHHHHHHHHHHHHHHccCCCHHHHHhcHHHH-HHHHHH-------------
Q 029372 70 VVASVQYRAL--A-EKAS--DAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDI-AKAVEE------------- 130 (194)
Q Consensus 70 v~~~v~yrV~--d-~~~~--~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l-~~~i~~------------- 130 (194)
+..+++|+.. | .|+. ..+|++.|+-.-.=..+.+-+|..+++.++++++.+=..+ -..+.-
T Consensus 539 L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~~~~ 618 (861)
T 2zuo_A 539 LQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTL 618 (861)
T ss_dssp EEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC-----------
T ss_pred EEEEEEEEEeccCCCChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCccccccccccc
Confidence 9999999885 2 1233 5678889987777788888999999999999998653333 111100
Q ss_pred --HHH--HHhcccCeEEEEEEEeecCC-CHHHHHHHH
Q 029372 131 --ELE--KAMSHYGYEIVQTLIVDIEP-DEHVKRAMN 162 (194)
Q Consensus 131 --~l~--~~~~~~Gi~v~~v~i~~i~~-p~~i~~a~~ 162 (194)
..+ -.+...|+.|.+|.|+++.| +..+.++++
T Consensus 619 ~~~~~~~~~F~~N~lvitsVDvqsvEpvDqrtrd~Lq 655 (861)
T 2zuo_A 619 LPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQ 655 (861)
T ss_dssp --CCCSCEECTTTCEEEEEEEEEEEEESSHHHHHHHH
T ss_pred ccCcccceEEccCCeEEEEEeeeeecccCHHHHHHHH
Confidence 001 12455699999999999997 444555443
No 6
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=68.32 E-value=26 Score=27.74 Aligned_cols=89 Identities=16% Similarity=0.236 Sum_probs=55.0
Q ss_pred ccccCCCcEEEEEEEEEEEEcc---cchhhhcccccChHHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHHHHHHHHHH
Q 029372 59 ETKTKDNVFVNVVASVQYRALA---EKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKA 135 (194)
Q Consensus 59 ~v~TkD~~~v~v~~~v~yrV~d---~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~i~~~l~~~ 135 (194)
++.|+||-.+.|.....-+-.. ....+..|.-..-...|+....+.+...+++.+++++...- +.+.+-.++...
T Consensus 129 dVkT~DGY~lRvf~i~fT~kr~~~~~q~kkt~Ya~~SQir~IRkkm~eii~~~~~~~dl~e~V~kl--i~~~i~keI~k~ 206 (265)
T 2xzm_4 129 DCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNL--IGEDYTKKIEKE 206 (265)
T ss_dssp EEEETTTEEEEEEEEEEECCCSSCCSCSSCCBCCTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHH--HTTHHHHHHHHH
T ss_pred EEEeCCCcEEEEEEEEEEecccccccccceeeeccccchHHHHHHHHHHHHHHhhhCCHHHHHHHH--ccchHHHHHHHH
Confidence 5789999888876554432221 01112233323346679999999999999999999999532 445555566655
Q ss_pred hcccCeEEEEEEEee
Q 029372 136 MSHYGYEIVQTLIVD 150 (194)
Q Consensus 136 ~~~~Gi~v~~v~i~~ 150 (194)
+... .-+.+|.|+.
T Consensus 207 ~k~I-yPL~~V~IrK 220 (265)
T 2xzm_4 207 TKNI-FPLQNITIRK 220 (265)
T ss_dssp HTTT-CCEEEEEEEE
T ss_pred hhhc-cccceEEEEE
Confidence 6542 2234455554
No 7
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B
Probab=54.83 E-value=27 Score=27.50 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=48.6
Q ss_pred ccccCCCcEEEEEEEEEEEEcccchhhhcccccChHHHHHHHHHHHHHHHccCCCHHHHHhcH--HHHHHHHHHHHH
Q 029372 59 ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQK--NDIAKAVEEELE 133 (194)
Q Consensus 59 ~v~TkD~~~v~v~~~v~yrV~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R--~~l~~~i~~~l~ 133 (194)
++.|+||-.+.+.....-+-.+....+..|.-..-...|+....+.+...+++.++.++...- +.++.+|..+.+
T Consensus 126 dVkT~DGy~lRvf~i~fT~kr~~q~~kt~YA~~sQi~~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~~eI~k~~k 202 (255)
T 3u5c_B 126 TVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATK 202 (255)
T ss_dssp EEECSSSCEEEECCEEECCCCTTCCSSCCCCCSHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEEEcccccccccceechHhHHHHHHHHHHHHHHHHhhhCCHHHHHHHHcCchHHHHHHHHhc
Confidence 689999988887655442222101112223323345689999999999999999999999643 555555555543
No 8
>2acm_B Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=48.77 E-value=22 Score=21.09 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=14.9
Q ss_pred HhcccCeEEEEEEEeecCCCHH
Q 029372 135 AMSHYGYEIVQTLIVDIEPDEH 156 (194)
Q Consensus 135 ~~~~~Gi~v~~v~i~~i~~p~~ 156 (194)
....|.+.|.++.++|+.+|..
T Consensus 31 a~~~YnL~IS~vsV~dv~FPsS 52 (55)
T 2acm_B 31 AASRYNLTISDVSVSDVPFPFS 52 (55)
T ss_dssp HHHHHCCCEEEEEEECC-----
T ss_pred ccccccceecceeEEeccCCCc
Confidence 3458999999999999999865
No 9
>2yfv_C SCM3, KLLA0F05115P; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140}
Probab=27.31 E-value=49 Score=20.00 Aligned_cols=32 Identities=16% Similarity=0.390 Sum_probs=26.2
Q ss_pred ccCCCHHHHHhcHHHHHHHHHHHHHHHhcccC
Q 029372 109 VPKLDLDATFEQKNDIAKAVEEELEKAMSHYG 140 (194)
Q Consensus 109 i~~~~~~~l~~~R~~l~~~i~~~l~~~~~~~G 140 (194)
+-+++-++++..|.+-.+.+++.-+..+++||
T Consensus 15 iP~lsdeevme~hk~adermK~~w~~Ii~KY~ 46 (63)
T 2yfv_C 15 IPKLSDEEVMERHKKADENMKRVWSQIIQKYE 46 (63)
T ss_dssp EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778889998888888888888888888875
No 10
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=20.73 E-value=1.2e+02 Score=19.84 Aligned_cols=38 Identities=3% Similarity=0.121 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHccCCCHHHHHh-----cHHHHHHHHHHHH
Q 029372 94 RSQIQAYVFDVIRASVPKLDLDATFE-----QKNDIAKAVEEEL 132 (194)
Q Consensus 94 ~~~l~~~~~~~lr~~i~~~~~~~l~~-----~R~~l~~~i~~~l 132 (194)
.+.++..++..+++- .+.++++++. .|..+-+.++.+|
T Consensus 39 ~Devr~~~r~~i~~~-~~vt~~~L~~~I~P~Ar~~VP~~VK~El 81 (96)
T 3mhs_B 39 VDKVKDLTKSEMNIN-ESTNFTQILSTVEPKALEMVSDSTRETV 81 (96)
T ss_dssp HHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-CCCCHHHHHHHHhHHHHHHCCHHHHHHH
Confidence 345677777777777 8889999884 4444444444444
No 11
>3l6t_A TRAI, mobilization protein TRAI; TRWC superfamily of relaxase enzymes, conjugative relaxase, relaxase, conjugal nickase, hydrolase; HET: CIT; 1.93A {Escherichia coli} SCOP: d.89.1.0 PDB: 3l57_A*
Probab=20.59 E-value=1e+02 Score=24.82 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=30.0
Q ss_pred CCCHHHHHhcHHHHHHHHHHHHHHHhcccCeEEEEE---EEeecC-CCHHHHHHHHHHHH
Q 029372 111 KLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQT---LIVDIE-PDEHVKRAMNEINA 166 (194)
Q Consensus 111 ~~~~~~l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v---~i~~i~-~p~~i~~a~~~~~~ 166 (194)
.++-+.++.....+..--...|...+.+.|+++... ..-+|. +|+++.+++.++-.
T Consensus 181 aL~~~~l~~~~~~~~~~Y~~~La~~L~~lGy~~~~~~~~g~~EI~Gv~~e~i~~FS~R~~ 240 (302)
T 3l6t_A 181 ALKNDELMRNKMHLGDVYKQELALELTKAGYELRYNSKNNTFDMAHFSDEQIRAFSRRSE 240 (302)
T ss_dssp CCCTHHHHTTHHHHHHHHHHHHHHHHHHHTCCEEEETTTTEEEETTTC------------
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEcCCCCceEEcCCCHHHHHHhCcHHH
Confidence 345567777777777777777888887889888775 122343 78888888877533
Done!