BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029373
(194 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49209|RL91_ARATH 60S ribosomal protein L9-1 OS=Arabidopsis thaliana GN=RPL9B PE=2
SV=3
Length = 194
Score = 337 bits (863), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 162/193 (83%), Positives = 178/193 (92%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILSSETMDIPD V IK++AK+IEVEGPRGKL RDFKHLNLDF L+ D ETGK+KLKI
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
D+WFG+RKTSA+IRTALSHV NLI+GVT+G+RYKMRFVYAHFPINASIG KSIEIRNF
Sbjct: 61 DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEKKVRKV+MLDGVT+VRSEKVKDE++LDGNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180
Query: 181 GIYVSERGTIFEE 193
GIYVSE+ I EE
Sbjct: 181 GIYVSEKSKIVEE 193
>sp|P30707|RL9_PEA 60S ribosomal protein L9 OS=Pisum sativum GN=RPL9 PE=2 SV=1
Length = 193
Score = 336 bits (862), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 165/193 (85%), Positives = 179/193 (92%), Gaps = 1/193 (0%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILSSETM+IPDGV IK+NAK+IEVEGPRGKL RDFKHLNLDF L+TDE GK+KLKI
Sbjct: 1 MKTILSSETMNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITDE-NGKKKLKI 59
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
DAWFGSRKTSAAIRTALSHV NLITGVTKG+RYKMRFVYA FPINASI N NKSIEIRNF
Sbjct: 60 DAWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNF 119
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEKKVRKVD+LDGV+++RSEKVKDE++LDGNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 120 LGEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 179
Query: 181 GIYVSERGTIFEE 193
GIYVSE+G + E
Sbjct: 180 GIYVSEKGAVVVE 192
>sp|Q9SZX9|RL92_ARATH 60S ribosomal protein L9-2 OS=Arabidopsis thaliana GN=RPL9D PE=2
SV=1
Length = 194
Score = 333 bits (854), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 161/193 (83%), Positives = 177/193 (91%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILSSETMDIPDGV IK+NAK+IEVEGPRGKL+RDFKHLNLDF L+ D+ TGKR+LKI
Sbjct: 1 MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
D+WFGSRKTSA+IRTALSHV NLI GVT+G+ Y+MRFVYAHFPINASI NKSIEIRNF
Sbjct: 61 DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEKKVRKV+MLDGV +VRSEKVKDE+IL+GNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLD 180
Query: 181 GIYVSERGTIFEE 193
GIYVSE+G I E
Sbjct: 181 GIYVSEKGKIAVE 193
>sp|P49210|RL9_ORYSJ 60S ribosomal protein L9 OS=Oryza sativa subsp. japonica GN=RPL9
PE=2 SV=3
Length = 190
Score = 325 bits (833), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 153/193 (79%), Positives = 178/193 (92%), Gaps = 4/193 (2%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTIL+SETM+IP+GV +++ AK++ VEGPRGKL+R+FKHLNLDF L+ G RKL++
Sbjct: 1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLE----GGRKLQV 56
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
DAWFG+R+T AAIRTA+SHV NLITGVTKGYRYKMRFVYAHFPINASI N+N +IEIRNF
Sbjct: 57 DAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNF 116
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEKKVRKVDML+GVT++RSEKVKDEL+LDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 117 LGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 176
Query: 181 GIYVSERGTIFEE 193
GIYVS++GTI E+
Sbjct: 177 GIYVSDKGTITED 189
>sp|Q90YW0|RL9_ICTPU 60S ribosomal protein L9 OS=Ictalurus punctatus GN=rpl9 PE=2 SV=1
Length = 192
Score = 230 bits (586), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 111/192 (57%), Positives = 140/192 (72%), Gaps = 3/192 (1%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIPD V + + + + V+GPRG L R+F H+NL+ L+ ++ +KL++
Sbjct: 1 MKTILSTQTVDIPDNVDVTLKGRTVSVKGPRGVLRREFNHINLELRLLGKKQ---KKLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I +EIRNF
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNF 117
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +R+V M GV S KDEL+L+GNDIELVS SAALI Q VKNKDIRKFLD
Sbjct: 118 LGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLD 177
Query: 181 GIYVSERGTIFE 192
GIYVSE+GT+ E
Sbjct: 178 GIYVSEKGTVVE 189
>sp|P51410|RL9_MOUSE 60S ribosomal protein L9 OS=Mus musculus GN=Rpl9 PE=2 SV=2
Length = 192
Score = 227 bits (578), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 111/190 (58%), Positives = 141/190 (74%), Gaps = 3/190 (1%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V+I + + + V+GPRG L RDF H+N++ L+ + K++L++
Sbjct: 1 MKTILSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I +EIRNF
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +R+V M GV S+ KDELIL+GNDIELVS SAALI Q VKNKDIRKFLD
Sbjct: 118 LGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLD 177
Query: 181 GIYVSERGTI 190
GIYVSE+GT+
Sbjct: 178 GIYVSEKGTV 187
>sp|Q5IFJ7|RL9_MACFA 60S ribosomal protein L9 OS=Macaca fascicularis GN=RPL9 PE=2 SV=1
Length = 192
Score = 226 bits (577), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 112/190 (58%), Positives = 140/190 (73%), Gaps = 3/190 (1%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V I + + + V+GPRG L RDF H+N++ L+ + K++L++
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
D W+G+RK A IRT SHV N+I GVT G+RYKMR VYAHFPIN I +EIRNF
Sbjct: 58 DKWWGNRKELATIRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +R+V M GV S+ KDELIL+GNDIELVS SAALI Q VKNKDIRKFLD
Sbjct: 118 LGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLD 177
Query: 181 GIYVSERGTI 190
GIYVSE+GT+
Sbjct: 178 GIYVSEKGTV 187
>sp|P32969|RL9_HUMAN 60S ribosomal protein L9 OS=Homo sapiens GN=RPL9 PE=1 SV=1
Length = 192
Score = 226 bits (576), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 111/190 (58%), Positives = 140/190 (73%), Gaps = 3/190 (1%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V I + + + V+GPRG L RDF H+N++ L+ + K++L++
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I +EIRNF
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +R+V M GV S+ KDELIL+GNDIELVS SAALI Q VKNKDIRKFLD
Sbjct: 118 LGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLD 177
Query: 181 GIYVSERGTI 190
GIYVSE+GT+
Sbjct: 178 GIYVSEKGTV 187
>sp|P17077|RL9_RAT 60S ribosomal protein L9 OS=Rattus norvegicus GN=Rpl9 PE=1 SV=1
Length = 192
Score = 226 bits (576), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 111/190 (58%), Positives = 140/190 (73%), Gaps = 3/190 (1%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V I + + + V+GPRG L RDF H+N++ L+ + K++L++
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I +EIRNF
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +R+V M GV S+ KDELIL+GNDIELVS SAALI Q VKNKDIRKFLD
Sbjct: 118 LGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLD 177
Query: 181 GIYVSERGTI 190
GIYVSE+GT+
Sbjct: 178 GIYVSEKGTV 187
>sp|Q3SYR7|RL9_BOVIN 60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1
Length = 192
Score = 226 bits (576), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 111/190 (58%), Positives = 140/190 (73%), Gaps = 3/190 (1%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V I + + + V+GPRG L RDF H+N++ L+ + K++L++
Sbjct: 1 MKTILSNQTVDIPENVDINLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I +EIRNF
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +R+V M GV S+ KDELIL+GNDIELVS SAALI Q VKNKDIRKFLD
Sbjct: 118 LGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLD 177
Query: 181 GIYVSERGTI 190
GIYVSE+GT+
Sbjct: 178 GIYVSEKGTV 187
>sp|Q5R9Q7|RL9_PONAB 60S ribosomal protein L9 OS=Pongo abelii GN=RPL9 PE=2 SV=1
Length = 192
Score = 225 bits (573), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/190 (58%), Positives = 139/190 (73%), Gaps = 3/190 (1%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V I + + + V+GPRG L RDF H+N++ L+ + K++L++
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I +EIRNF
Sbjct: 58 DEWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +R+V M GV S+ KDELIL GNDIELVS SAALI Q VKNKDIRKFLD
Sbjct: 118 LGEKYIRRVRMRPGVACSVSQAQKDELILGGNDIELVSNSAALIQQATTVKNKDIRKFLD 177
Query: 181 GIYVSERGTI 190
GIYVSE+GT+
Sbjct: 178 GIYVSEKGTV 187
>sp|Q963B7|RL9_SPOFR 60S ribosomal protein L9 OS=Spodoptera frugiperda GN=RpL9 PE=2 SV=1
Length = 190
Score = 221 bits (562), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 106/190 (55%), Positives = 139/190 (73%), Gaps = 5/190 (2%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK I++++ + IP+G+ + + ++++ V+GPRG L R+FKHL +D ++ R LK+
Sbjct: 1 MKQIVANQKVKIPEGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RVLKV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
+ WFGS+K AA+RT SHV N+I GVTKG++YKMR VYAHFPIN N IEIRNF
Sbjct: 56 EKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRSVYAHFPINCVTTEGNSVIEIRNF 115
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +R+V M GVTVV S K KDELI++GN +E VS SAALI Q VKNKDIRKFLD
Sbjct: 116 LGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLD 175
Query: 181 GIYVSERGTI 190
G+YVSE+ T+
Sbjct: 176 GLYVSEKTTV 185
>sp|P50882|RL9_DROME 60S ribosomal protein L9 OS=Drosophila melanogaster GN=RpL9 PE=1
SV=2
Length = 190
Score = 217 bits (553), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/190 (56%), Positives = 136/190 (71%), Gaps = 5/190 (2%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
M+TI S++ + IP +K + A+++ + G RG L R FKHL LD + M D KR LK+
Sbjct: 1 MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMY-MPD----KRTLKV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
+ WFG++K AA+RT SH+ N+I GVT G++YKMR VYAHFPIN N IEIRNF
Sbjct: 56 EKWFGTKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNF 115
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +R+V+M GVTVV S KDELI++GNDIE VS SAALI Q VKNKDIRKFLD
Sbjct: 116 LGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKDIRKFLD 175
Query: 181 GIYVSERGTI 190
G+YVSE+ T+
Sbjct: 176 GLYVSEKTTV 185
>sp|Q54XI5|RL9_DICDI 60S ribosomal protein L9 OS=Dictyostelium discoideum GN=rpl9 PE=1
SV=2
Length = 188
Score = 211 bits (538), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 100/194 (51%), Positives = 139/194 (71%), Gaps = 6/194 (3%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK I SS + IP+ V + + + ++V GPRG LS+ F H ++D +L+ GK++L +
Sbjct: 1 MKVINSSRKVQIPENVTVDVKGRSVKVTGPRGTLSKSFDHASVDINLV-----GKKELTV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
D WFG+RK A I+T S + N+ITGVTKGY YKMRFVYAHFPIN ++ + + +EIRNF
Sbjct: 56 DLWFGNRKQIACIKTITSIIENMITGVTKGYEYKMRFVYAHFPINVAVTDGGRVVEIRNF 115
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
GEK VR++++LDG+T R+EK KDE++L GN +EL+S+S A I + +K KD+RKFLD
Sbjct: 116 FGEKIVRRIELLDGITCYRNEKAKDEIVLTGNSLELLSQSCATIQLRSAIKYKDVRKFLD 175
Query: 181 GIYVSERGTIFEEN 194
GIYVSER + E N
Sbjct: 176 GIYVSER-NVLESN 188
>sp|Q95Y90|RL9_CAEEL 60S ribosomal protein L9 OS=Caenorhabditis elegans GN=rpl-9 PE=1
SV=1
Length = 189
Score = 208 bits (529), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 99/190 (52%), Positives = 135/190 (71%), Gaps = 5/190 (2%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK I S++T+ P+GV + +I+ V GPRG + +DF+HL+++ E GK L++
Sbjct: 1 MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEM-----ERIGKSTLRV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
WFG RK AAIRT SH+ N+I GVT G+RYKMR VYAHFPIN ++ + N+++EIRNF
Sbjct: 56 RKWFGVRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNF 115
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK VR+V + +GV S KDE++++GND++ VS++AA I Q VK KDIRKFLD
Sbjct: 116 LGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLD 175
Query: 181 GIYVSERGTI 190
GIYVSE+ TI
Sbjct: 176 GIYVSEKTTI 185
>sp|P51401|RL9B_YEAST 60S ribosomal protein L9-B OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL9B PE=1 SV=1
Length = 191
Score = 196 bits (499), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 99/195 (50%), Positives = 139/195 (71%), Gaps = 7/195 (3%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK I + + ++IP+GV + I ++I++V GPRG L+++ KH+++ F + + +K+
Sbjct: 1 MKYIQTEQQIEIPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTF-----TKVNNQLIKV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASI--GNANKSIEIR 118
G RK AA+RT S V N+ITGVTKGY+YKMR+VYAHFPIN +I + K IE+R
Sbjct: 56 AVHNGDRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVR 115
Query: 119 NFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKF 178
NFLG+KK+R V + DGVT+ S VKDE++L GN +E VS++AA + Q C V+NKDIRKF
Sbjct: 116 NFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKF 175
Query: 179 LDGIYVSERGTIFEE 193
LDGIYVS +G I E+
Sbjct: 176 LDGIYVSHKGFIVED 190
>sp|P05738|RL9A_YEAST 60S ribosomal protein L9-A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL9A PE=1 SV=2
Length = 191
Score = 195 bits (495), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/195 (50%), Positives = 139/195 (71%), Gaps = 7/195 (3%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK I + + +++P+GV + I ++I++V GPRG L+++ KH+++ F + + +K+
Sbjct: 1 MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTF-----TKVNNQLIKV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASI--GNANKSIEIR 118
G RK AA+RT S V N+ITGVTKGY+YKMR+VYAHFPIN +I + K IE+R
Sbjct: 56 AVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVR 115
Query: 119 NFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKF 178
NFLG+KK+R V + DGVT+ S VKDE++L GN +E VS++AA + Q C V+NKDIRKF
Sbjct: 116 NFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKF 175
Query: 179 LDGIYVSERGTIFEE 193
LDGIYVS +G I E+
Sbjct: 176 LDGIYVSHKGFITED 190
>sp|O74905|RL9B_SCHPO 60S ribosomal protein L9-B OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl9b PE=3 SV=1
Length = 189
Score = 193 bits (491), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 97/191 (50%), Positives = 131/191 (68%), Gaps = 6/191 (3%)
Query: 2 KTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKID 61
+ I ET+ IP+GV + I A+++ V+GPRG L ++ + ++++ + +K
Sbjct: 3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQGN------TIKFI 56
Query: 62 AWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFL 121
W GSRK +A IRTA S + N+I GVT+G+RYKMR VYAHFPIN ++ +EIRNFL
Sbjct: 57 VWHGSRKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFL 116
Query: 122 GEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDG 181
GE+ R + L GVTV S VKDE+I++GN +E VS+SAA I Q C+V+NKDIRKFLDG
Sbjct: 117 GERITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDG 176
Query: 182 IYVSERGTIFE 192
IYVSERG I E
Sbjct: 177 IYVSERGNIEE 187
>sp|Q10232|RL9A_SCHPO 60S ribosomal protein L9-A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl9a PE=3 SV=1
Length = 190
Score = 191 bits (486), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 97/191 (50%), Positives = 128/191 (67%), Gaps = 6/191 (3%)
Query: 2 KTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKID 61
+ I ET+ IP GV + I A+ + V GPRG L ++ +H++++ + +K
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQGN------TIKFI 56
Query: 62 AWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFL 121
W GSRK +A IR+ S + N+I GVT+G+RYKMR VYAHFPIN ++ +EIRNFL
Sbjct: 57 VWHGSRKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFL 116
Query: 122 GEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDG 181
GE+ R + L GVTV S VKDE+IL+GN +E VS+SAA I Q C+V+NKDIRKFLDG
Sbjct: 117 GERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDG 176
Query: 182 IYVSERGTIFE 192
IYVSERG I E
Sbjct: 177 IYVSERGNIEE 187
>sp|Q22AX5|RL9_TETTS 60S ribosomal protein L9 OS=Tetrahymena thermophila (strain SB210)
GN=RPL9 PE=1 SV=1
Length = 188
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 77/187 (41%), Positives = 122/187 (65%), Gaps = 5/187 (2%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
M+ +L+ + IPD V I +++EV+GP G + R F++ ++D T + +K+
Sbjct: 1 MRHLLTEVNVPIPDKVTITAKQRVVEVKGPLGTIKRAFRYASVDIQKPTADN-----VKL 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
W SRK A +++ S + N+I GVT+GY++KM+ +AHFPI ++ SIEI++F
Sbjct: 56 QIWQASRKERAVLQSIASQIKNMIRGVTEGYKFKMKLAFAHFPIQEAVAKDGSSIEIKHF 115
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK++R++ L GV + R ++ K+ L L G D+ VS++ ALI+Q C VK KDIR+FLD
Sbjct: 116 LGEKRIRRIQALPGVKISRKDEEKNTLTLQGIDLNNVSQTCALIHQSCLVKEKDIRQFLD 175
Query: 181 GIYVSER 187
GIYVS++
Sbjct: 176 GIYVSDK 182
>sp|A2BMD5|RL6_HYPBU 50S ribosomal protein L6P OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=rpl6p PE=3 SV=1
Length = 186
Score = 153 bits (387), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 125/190 (65%), Gaps = 10/190 (5%)
Query: 2 KTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHL-NLDFHLMTDEETGKRKLKI 60
K + +E + +P+GV++ I+ + V+GP+G+L+RDF H N+ L DEE +K+ +
Sbjct: 3 KAVYVAEEVRVPEGVEVSIDGLKVTVKGPKGELTRDFSHARNIVIRLDEDEEG--KKVVV 60
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
+A+F +R+ A + T +H+ N+ITGVTKG+RYK++ VY+HFP+ + + I NF
Sbjct: 61 EAYFANRRVKALVGTIAAHIENMITGVTKGFRYKLKIVYSHFPVTVKV--QGDKVVIENF 118
Query: 121 LGEKKVRKVDMLDGVTVVRSEKV-KDELILDGNDIELVSRSAALINQKCHVKNKDIRKFL 179
LGEK R ++ GVTV KV KD++I++G DIE V ++AA I Q VK+KD R F+
Sbjct: 119 LGEKAPRIAKIMPGVTV----KVQKDDVIVEGIDIEAVGQTAANIEQATKVKDKDRRVFI 174
Query: 180 DGIYVSERGT 189
DGIY+ E+G
Sbjct: 175 DGIYIYEKGV 184
>sp|O02376|RL9_HAECO 60S ribosomal protein L9 (Fragment) OS=Haemonchus contortus PE=2
SV=1
Length = 141
Score = 151 bits (381), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 68/131 (51%), Positives = 93/131 (70%), Gaps = 5/131 (3%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK + S++T+D PDGV + +++ V GPRG L RDF+HL+++ E GK +L++
Sbjct: 1 MKLVESNDTVDFPDGVTFTVKNRVVHVTGPRGTLKRDFRHLHMEM-----ERVGKNQLRV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
WFG RK AAIRT SH+ N+I GVTKG+RYKMR VYAHFPIN ++ + +++EIRNF
Sbjct: 56 RKWFGVRKEIAAIRTVCSHIQNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIRNF 115
Query: 121 LGEKKVRKVDM 131
LGEK VR V +
Sbjct: 116 LGEKIVRPVPL 126
>sp|A8AC04|RL6_IGNH4 50S ribosomal protein L6P OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=rpl6p PE=3 SV=1
Length = 186
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 105/164 (64%), Gaps = 8/164 (4%)
Query: 25 IEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLI 84
++V GP+G+L RDF H + EE GK+++ ++ +F +RK A + T +H+ N+I
Sbjct: 26 VKVRGPKGELERDFSHAK-GIRIRVVEEEGKKQVLVETFFANRKRKALVNTVAAHIKNMI 84
Query: 85 TGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVK 144
TGVTKG+RYKM+ V++HFPI+ + +EI NF+GEK R +L GVTV KV+
Sbjct: 85 TGVTKGWRYKMKIVFSHFPISVKV--VGDRVEIHNFIGEKAPRVAKVLPGVTV----KVQ 138
Query: 145 D-ELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSER 187
++I++G DIE V+++AA I Q + D R F+DGIY+ R
Sbjct: 139 GRDVIIEGTDIEKVAQTAANIEQATKITEFDRRVFMDGIYIYAR 182
>sp|B8D5V4|RL6_DESK1 50S ribosomal protein L6P OS=Desulfurococcus kamchatkensis (strain
1221n / DSM 18924) GN=rpl6p PE=3 SV=1
Length = 184
Score = 130 bits (328), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 111/182 (60%), Gaps = 8/182 (4%)
Query: 7 SETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGS 66
+E ++IP+ V ++++ + V+GP+G ++RDF H F + D R + ++ +
Sbjct: 8 AEKVEIPENVAVEVDGLRVTVKGPKGIITRDFSHARGVFIRLED-----RVVIVETFVAD 62
Query: 67 RKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKV 126
RK A + T +H+ N+ITGV +GYRYK++ +++HFPI S+ NK + IRNF+GEK
Sbjct: 63 RKQKALVGTIAAHIRNMITGVVRGYRYKLKIIFSHFPITVSVDEKNKVVRIRNFMGEKSD 122
Query: 127 RKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
R + V V S +++I++G DIE V +AA I + V ++D R F+DGIY+ E
Sbjct: 123 RIAKIYGNVKVKVS---GEDIIIEGVDIEEVGLTAASIERATRVTDRDRRVFMDGIYIYE 179
Query: 187 RG 188
+G
Sbjct: 180 KG 181
>sp|A3DNC3|RL6_STAMF 50S ribosomal protein L6P OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=rpl6p PE=3 SV=1
Length = 185
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 113/183 (61%), Gaps = 11/183 (6%)
Query: 8 ETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E +DIP+ V ++IN ++V GP+G + RDF H+ +++ +E K + ++ +F R
Sbjct: 9 EEIDIPENVTVEINGLKVKVNGPKGSIERDFSHVR---NIILRKENSK--IIVETFFADR 63
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEK--K 125
+ A + T SH+ N+I GV KGYRYK++ +Y+HFPI + + N+ + I+NFLGEK +
Sbjct: 64 RKKALVGTIASHIENMIKGVLKGYRYKLKIIYSHFPITVEVDDRNRIVRIKNFLGEKSDR 123
Query: 126 VRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVS 185
+ K+ D V+ E ++I++G DIE V ++AA I VK+KD R F DGIY+
Sbjct: 124 IAKIIGEDVKVTVKGE----DIIVEGIDIEHVGQTAANIELATKVKDKDRRVFADGIYIY 179
Query: 186 ERG 188
+ G
Sbjct: 180 DWG 182
>sp|Q975J6|RL6_SULTO 50S ribosomal protein L6P OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rpl6p PE=3 SV=1
Length = 186
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 113/195 (57%), Gaps = 12/195 (6%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK + E ++IP G+ + I I+V+GP+G++ +DF H++ + ++ K+ +
Sbjct: 1 MKAVHLYEEIEIPQGINVNIEGMKIKVKGPKGEIEKDFSHIS-GIEIRKED----NKIVV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
+ F R+ A + ++H+ N+ TGVTKGYRY ++ +Y HFP+ + + ++I+N
Sbjct: 56 ETTFADRRKKAQFYSIIAHIENMFTGVTKGYRYYLKIIYTHFPVTVKV--SGNEVQIQNL 113
Query: 121 LGEKKVRKVDMLDGVTV-VRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFL 179
+GEK +R+ ++ GV V V+ E ++I++G DIE V ++AA I + D R F
Sbjct: 114 IGEKNIRRAKIMTGVKVNVKGE----DIIVEGQDIEKVGQTAANIELASKITGYDRRVFA 169
Query: 180 DGIYVSERGTIFEEN 194
DGIY+ ++ I E
Sbjct: 170 DGIYIYKKEVIGSEQ 184
>sp|Q9YF91|RL6_AERPE 50S ribosomal protein L6P OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpl6p PE=3
SV=1
Length = 182
Score = 120 bits (301), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 111/184 (60%), Gaps = 12/184 (6%)
Query: 8 ETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E +++P+GV + I+ ++V GP+G++ RDF H + D + ++++F
Sbjct: 9 ERVEVPEGVTVSIDGMRVKVSGPKGEVERDFSHARGVLIRLEDNS-----VVVESFFAKA 63
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVR 127
+ A + H+ N+I GV G+RYK++ +Y+HFPIN + +K I I NFLGEK +R
Sbjct: 64 RQRALVGAIAGHIRNMIKGVQGGFRYKLKIMYSHFPINVKV-EGDKFI-ISNFLGEKGLR 121
Query: 128 KVDMLDGVTVVRSEKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
++ GV V +VK ++I++G D+E V+++AA I VK+KD RKF+DGIY+ E
Sbjct: 122 IARIMPGVKV----QVKGSDVIVEGIDVEKVAQTAANIELATKVKDKDRRKFMDGIYIYE 177
Query: 187 RGTI 190
R I
Sbjct: 178 REVI 181
>sp|Q9V1V1|RL6_PYRAB 50S ribosomal protein L6P OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rpl6p PE=3 SV=1
Length = 184
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 106/182 (58%), Gaps = 13/182 (7%)
Query: 8 ETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV++ + ++V+GP+G++ R+ + + E GK + D F R
Sbjct: 9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFV----EGGKVVIYKD--FPRR 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVR 127
K A +RT +H+ N+I GVT+G+ YK++ VY+HFPI + + I NFLGEK R
Sbjct: 63 KDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKV--QGDEVIIENFLGEKAPR 120
Query: 128 KVDMLDGVTVVRSEKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
+ +L GVTV KVK E+I++G D E V ++AA I Q + D R F DGIY+ E
Sbjct: 121 RAKILPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVE 176
Query: 187 RG 188
+
Sbjct: 177 KA 178
>sp|Q5JJG4|RL6_PYRKO 50S ribosomal protein L6P OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rpl6p PE=3 SV=1
Length = 184
Score = 117 bits (293), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 109/182 (59%), Gaps = 13/182 (7%)
Query: 8 ETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV++ + ++V+GP+G+L R+ K+ + + T++ K+ I F +
Sbjct: 9 EEIEIPEGVEVTVEGNTVKVKGPKGELQRELKYPGV--QIFTED----GKVVIYKEFPRK 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVR 127
K A +RT +H+ N+I GVT+G++Y+++ VY+HFP+ + + I NFLGEK R
Sbjct: 63 KDVAIVRTFKAHINNMIKGVTEGFKYRLKVVYSHFPMTVKV--QGDEVVIENFLGEKNPR 120
Query: 128 KVDMLDGVTVVRSEKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
+ +L GVTV KVK E+ ++G D E V ++AA I Q + D R F DGIY+ E
Sbjct: 121 RAKILPGVTV----KVKGSEIEVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVE 176
Query: 187 RG 188
+
Sbjct: 177 KA 178
>sp|B6YSN0|RL6_THEON 50S ribosomal protein L6P OS=Thermococcus onnurineus (strain NA1)
GN=rpl6p PE=3 SV=1
Length = 184
Score = 117 bits (293), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 104/181 (57%), Gaps = 11/181 (6%)
Query: 8 ETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV++ I +++V GP+G+L R+ K+ + T K+ I F +
Sbjct: 9 EEVEIPEGVEVTIERNVVKVRGPKGELERELKYPGVQIF------TEDGKVVIYKEFPRK 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVR 127
K A RT +H+ N+I GVT+G+ YK++ VY+HFP+ + + I NFLGEK R
Sbjct: 63 KDIAIARTFKAHIANMIKGVTEGFTYKLKVVYSHFPMTVKV--QGDEVVIENFLGEKNPR 120
Query: 128 KVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSER 187
+ +L GVTV + + E+I++G D E V ++AA I Q + D R F DGIY+ E+
Sbjct: 121 RAKILPGVTV---KVMGSEVIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
Query: 188 G 188
Sbjct: 178 A 178
>sp|Q8U015|RL6_PYRFU 50S ribosomal protein L6P OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rpl6p PE=1 SV=1
Length = 184
Score = 116 bits (291), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 105/182 (57%), Gaps = 13/182 (7%)
Query: 8 ETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV++ + ++V+GP+G+L R+F + E G + D F R
Sbjct: 9 EEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFT----EDGNVVIYKD--FPRR 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVR 127
K A RT +H+ N+I GVT+G+ YK++ VY+HFPI+ + + I NFLGEK R
Sbjct: 63 KDVAIARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPISVKV--QGDEVIIENFLGEKAPR 120
Query: 128 KVDMLDGVTV-VRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
K +L GVTV VR + E+I++G D E V ++AA I Q + D R F DGIY+ E
Sbjct: 121 KAKILPGVTVKVRGQ----EIIVEGIDKEAVGQTAANIEQATRITKWDRRIFQDGIYIVE 176
Query: 187 RG 188
+
Sbjct: 177 KA 178
>sp|Q2FSG5|RL6_METHJ 50S ribosomal protein L6P OS=Methanospirillum hungatei (strain JF-1
/ DSM 864) GN=rpl6p PE=3 SV=1
Length = 176
Score = 116 bits (291), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 99/179 (55%), Gaps = 13/179 (7%)
Query: 10 MDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKT 69
+ IP GV + ++ ++ V+GP+G L RD + ++ + G ++ +
Sbjct: 7 VSIPSGVSVTMDGTVLHVKGPKGNLQRDMWYPGIEITI------GSEDVRFTTESQKKAV 60
Query: 70 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKV 129
++ + T SH N+ TGVTKGY Y M+ VY+HFPI + +++EI NFLGEK R
Sbjct: 61 TSMVGTLASHCSNMCTGVTKGYLYSMKVVYSHFPIQIKV--VGETLEIVNFLGEKYPRSA 118
Query: 130 DMLDGVTVVRSEKV-KDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSER 187
+L G TV KV DE+ + G D E+V +AA I + ++++D R F DGIY+ R
Sbjct: 119 RILPGTTV----KVGSDEVTVTGIDKEVVGSTAANIERATRIRDRDPRVFQDGIYIVSR 173
>sp|A0B9V4|RL6_METTP 50S ribosomal protein L6P OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=rpl6p PE=3 SV=1
Length = 176
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 109/178 (61%), Gaps = 11/178 (6%)
Query: 10 MDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKT 69
+DIPDGV ++I+ + + V+GP+G+LSR+ + +++ + E++ K+ I + ++
Sbjct: 9 LDIPDGVDVQISGRSVRVKGPKGELSRELWYPDIE---IKREDS---KILIRSVARKKQH 62
Query: 70 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKV 129
A + T +H+ N+I GVT G+ Y+MR VY+HFPI + A+ + I NFLGE+K R
Sbjct: 63 LAMVGTIAAHIKNMIRGVTDGFEYRMRVVYSHFPIQVKV--ADGKVAISNFLGERKPRFA 120
Query: 130 DMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSER 187
++ V V E KDE+++ G D E V ++ A I Q V+ D+R F DGIY+ E+
Sbjct: 121 TIVGDVNV---EVGKDEILIRGMDKEAVGQTMANIEQATRVRGFDVRIFQDGIYLVEK 175
>sp|A6VH01|RL6_METM7 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=rpl6p PE=3 SV=1
Length = 182
Score = 114 bits (284), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 103/185 (55%), Gaps = 13/185 (7%)
Query: 5 LSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
L E ++IP+ V +++N + V+ +L RD + ++ T K+ I+ F
Sbjct: 6 LIREEIEIPENVNVEVNGSTVAVKSGAKELKRDLLYPGIEIS------TEDGKVVIECTF 59
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASI-GNANKSIEIRNFLGE 123
+ +A + T SH+ N+ITGVT G+ YK+ YAHFP+ S GN ++ I NFLGE
Sbjct: 60 PRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN---TVTIDNFLGE 116
Query: 124 KKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 183
K R ++DGVTV S +E+I+ G + E V ++AA I Q VK +D R F DGIY
Sbjct: 117 KYTRTAKIMDGVTVKVS---GEEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIY 173
Query: 184 VSERG 188
+ E+
Sbjct: 174 IVEKA 178
>sp|A4FWA5|RL6_METM5 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=rpl6p PE=3 SV=1
Length = 182
Score = 114 bits (284), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 103/185 (55%), Gaps = 13/185 (7%)
Query: 5 LSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
L E ++IP+ V ++IN + V+ +L RD + ++ T K+ I+ F
Sbjct: 6 LIREEIEIPENVNVEINGNTVAVKSGAKELRRDLMYPGIEIS------TEDGKVVIECTF 59
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASI-GNANKSIEIRNFLGE 123
+ +A + T SH+ N+ITGVT G+ YK+ YAHFP+ S GN ++ I NFLGE
Sbjct: 60 PRKVQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN---TVTIDNFLGE 116
Query: 124 KKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 183
K R ++DGVTV S +E+I+ G + E V ++AA I Q VK +D R F DGIY
Sbjct: 117 KYTRTAKIMDGVTVKVS---GEEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIY 173
Query: 184 VSERG 188
+ E+
Sbjct: 174 IVEKA 178
>sp|Q9UX91|RL6_SULSO 50S ribosomal protein L6P OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rpl6p PE=3 SV=1
Length = 181
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 113/196 (57%), Gaps = 22/196 (11%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFK-----HLNLDFHLMTDEETGK 55
M+ ++ E ++IP V + + II+++GP+G++ +DF ++LD +
Sbjct: 1 MQIVILREEIEIPKNVVVDLKGSIIKIKGPKGEVVKDFSFAKGIQISLDGN--------- 51
Query: 56 RKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSI 115
K+ ++ F +R+ A + +SH+ N+ITGVTKGYRY ++ +Y HFP S+ +
Sbjct: 52 -KIVLETTFANRRKKAVFYSIVSHIKNMITGVTKGYRYYLKIIYTHFP--TSVKVVGNEV 108
Query: 116 EIRNFLGEKKVRKVDMLDGVTV-VRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKD 174
+I N +GEK R+ +L+GV V V+ E +++++G ++E V+++AA I + D
Sbjct: 109 QITNLIGEKNTRRAQILEGVKVTVKGE----DIVVEGPNLEAVAQTAANIESASKISGFD 164
Query: 175 IRKFLDGIYVSERGTI 190
R F DGI++ ++ I
Sbjct: 165 RRIFSDGIFIYKKEVI 180
>sp|Q0W1X2|RL6_UNCMA 50S ribosomal protein L6P OS=Uncultured methanogenic archaeon RC-I
GN=rpl6p PE=3 SV=1
Length = 177
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 105/178 (58%), Gaps = 10/178 (5%)
Query: 10 MDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKT 69
+++P GV + ++ + +G +G++SR+F+ + T K+ ++ ++T
Sbjct: 9 IEVPQGVTVTVSGATLTTKGQKGQISREFRFPGISVR------TDGGKVIVETGKDDKQT 62
Query: 70 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKV 129
A + T SH+ N++TGV++GY Y M+ VYAHFPI + +K + I NFLGE+K R
Sbjct: 63 KATVGTYASHIKNMMTGVSEGYEYHMKIVYAHFPIQVKVEGKDK-VTIGNFLGERKARTA 121
Query: 130 DMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSER 187
+++ G T V + D+++L G + E + ++AA I Q C ++ +D R F DGIY++ +
Sbjct: 122 NIV-GETKVTVQ--GDKVVLTGINKEDLGQTAANIEQACRIRKRDPRVFQDGIYITSK 176
>sp|O59433|RL6_PYRHO 50S ribosomal protein L6P OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl6p PE=3 SV=2
Length = 184
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 104/182 (57%), Gaps = 13/182 (7%)
Query: 8 ETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV++ + ++V+GP+G++ + + + E GK + D F R
Sbjct: 9 EEIEIPEGVEVSVQDYNVKVKGPKGEVEKKLFWPGVKIFV----EDGKVVIYKD--FPRR 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVR 127
K A +RT +H+ N+I GVT+G+ YK++ VY+HFPI + + I NFLGEK R
Sbjct: 63 KDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKV--QGDEVIIENFLGEKAPR 120
Query: 128 KVDMLDGVTVVRSEKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
+ +L GVTV KVK E+I++G D E ++AA I Q + D R F DGIY+ E
Sbjct: 121 RAKILPGVTV----KVKGQEIIVEGIDKEATGQTAANIEQATRITKWDRRVFQDGIYIVE 176
Query: 187 RG 188
+
Sbjct: 177 KA 178
>sp|A9A9P8|RL6_METM6 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=rpl6p PE=3 SV=1
Length = 182
Score = 110 bits (274), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 101/185 (54%), Gaps = 13/185 (7%)
Query: 5 LSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
L E ++IP V ++IN + V+ +L RD + ++ T K+ I+ F
Sbjct: 6 LIREEIEIPANVNVEINGNTVAVKSGAKELKRDLLYPGIEIS------TEDGKVVIECTF 59
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASI-GNANKSIEIRNFLGE 123
+ +A + T SH+ N+I GVT G+ YK+ YAHFP+ S GN ++ I NFLGE
Sbjct: 60 PRKAQTAIVGTYRSHIQNMIKGVTDGFEYKLVIRYAHFPMKVSAKGN---TVMIDNFLGE 116
Query: 124 KKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 183
K R ++DGVTV S +E+I+ G + E V ++AA I Q VK +D R F DGIY
Sbjct: 117 KYTRTAKIMDGVTVKVS---GEEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIY 173
Query: 184 VSERG 188
+ E+
Sbjct: 174 IVEKA 178
>sp|O26127|RL6_METTH 50S ribosomal protein L6P OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=rpl6p PE=3 SV=1
Length = 177
Score = 110 bits (274), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 102/181 (56%), Gaps = 14/181 (7%)
Query: 5 LSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
L E + IPDGV + I+ + V+GP+ +LSR F H + + D K+ ++ F
Sbjct: 6 LIREEIPIPDGVDVTIDGGVT-VKGPKWELSRKFNHSEISMAVEDD------KVVLEVKF 58
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEK 124
+K A I T +H+ N+ITGVT+G+RY+M+ VYAHFP++ + A + I NFLGE+
Sbjct: 59 PKKKDKAMIGTVRAHISNMITGVTEGFRYRMKIVYAHFPMSVKV--AGDKVVIENFLGER 116
Query: 125 KVRKVDMLDGVTVVRSEKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 183
R + V +VK DE+ + G + E V ++ A I Q +K +D R F DGIY
Sbjct: 117 HPRTARFVGDTKV----QVKGDEVEITGINKEHVGQTMANIEQATKIKGRDPRVFQDGIY 172
Query: 184 V 184
+
Sbjct: 173 L 173
>sp|Q6LXD7|RL6_METMP 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain S2 /
LL) GN=rpl6p PE=3 SV=1
Length = 182
Score = 110 bits (274), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 103/185 (55%), Gaps = 13/185 (7%)
Query: 5 LSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
L E ++IP+ V ++IN + V+ +L R+ + ++ T K+ I+ F
Sbjct: 6 LIREEIEIPENVNVEINGSTVVVKSGAKELKRELMYPGIEIS------TEDGKVVIECAF 59
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASI-GNANKSIEIRNFLGE 123
+ +A + T SH+ N+ITGVT G+ YK+ YAHFP+ S GN ++ I NFLGE
Sbjct: 60 PRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN---TVMIDNFLGE 116
Query: 124 KKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 183
K R ++DGVTV S +++++ G + E V ++AA I Q VK +D R F DGIY
Sbjct: 117 KYTRTAKIMDGVTVKVS---GEDVVVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIY 173
Query: 184 VSERG 188
+ E+
Sbjct: 174 IVEKA 178
>sp|C5A269|RL6_THEGJ 50S ribosomal protein L6P OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=rpl6p PE=3 SV=1
Length = 184
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 105/182 (57%), Gaps = 13/182 (7%)
Query: 8 ETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV++ + +++V+GP+G+L R+ K+ + T K+ + F +
Sbjct: 9 EEVEIPEGVEVTVENNVVKVKGPKGELERELKYPGVKIF------TEDGKVVVYKEFPRK 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVR 127
K A RT +H+ N+I GVT+G+ YK++ VY+HFP+ + + I NFLGEK R
Sbjct: 63 KDIAIARTFKAHINNMIKGVTEGFTYKLKVVYSHFPVTVKV--QGDEVIIENFLGEKNPR 120
Query: 128 KVDMLDGVTV-VRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
+ +L GVTV VR + E+ ++G D E V ++AA I Q + D R F DGIY+ E
Sbjct: 121 RAKILPGVTVKVRGQ----EITVEGIDKEKVGQTAANIEQATRITKWDRRVFQDGIYIVE 176
Query: 187 RG 188
+
Sbjct: 177 KA 178
>sp|P54042|RL6_METJA 50S ribosomal protein L6P OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rpl6p PE=3 SV=1
Length = 182
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 103/182 (56%), Gaps = 11/182 (6%)
Query: 7 SETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGS 66
E + IP+ V+++IN + V+ +L R F+H + DE + I +
Sbjct: 8 EERVKIPENVQVEINNNEVVVKSGGKELRRRFEHPKIVIKKEGDE------IVIFCEYPR 61
Query: 67 RKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKV 126
RK A + T +H+ N+I GVT+G+ YK++ YAHFP+ S+ N+ I I NFLGEK
Sbjct: 62 RKDKAMVGTIRAHINNMIKGVTEGFTYKLKIRYAHFPMKVSV-KGNEVI-IENFLGEKHP 119
Query: 127 RKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
R+ +++GVTV S +++I+ G D E V ++AA I Q +K +D R F DGIY+ E
Sbjct: 120 RRARIMEGVTVKIS---GEDVIVTGIDKEKVGQTAANIEQATRIKGRDPRVFQDGIYIVE 176
Query: 187 RG 188
+
Sbjct: 177 KA 178
>sp|A5UL72|RL6_METS3 50S ribosomal protein L6P OS=Methanobrevibacter smithii (strain PS
/ ATCC 35061 / DSM 861) GN=rpl6p PE=3 SV=1
Length = 178
Score = 105 bits (261), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 101/178 (56%), Gaps = 13/178 (7%)
Query: 8 ETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV++ IN + V+GP G+ SR F + N+D +T+ E + ++ F +
Sbjct: 9 EEIEIPEGVEVIINNNEVTVKGPNGEDSRKFTYPNVD---ITEVE---NNVVLETSFPRK 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKS-IEIRNFLGEKKV 126
K A I T +H+ N+ITGVT G+ Y M+ V+AHFP+ + NK + I NFLGE+
Sbjct: 63 KDKAMIGTTKAHISNMITGVTDGFEYHMKIVFAHFPMTVKV---NKDVVVIDNFLGERHP 119
Query: 127 RKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 184
R ++ VV DE+ + G + E V ++ A + Q +K +D R F DGIY+
Sbjct: 120 RTAKVVGSAKVVVK---GDEVTITGINKEHVGQTMANLEQATKIKGRDPRVFQDGIYL 174
>sp|O05637|RL6_SULAC 50S ribosomal protein L6P OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=rpl6p PE=3 SV=1
Length = 189
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 109/191 (57%), Gaps = 12/191 (6%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
+K E + IPD VK+ + +++V+GP+G++ +DF + + +E K+ +
Sbjct: 4 LKAAYIREEIQIPDKVKVSLENNVLKVKGPKGEVIKDFSYAK-GIRIQLNEG----KIIL 58
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
+ F R+ A + + ++H+ N+ITG GYRY ++ + HFPI+ + + +++ N
Sbjct: 59 ETTFADRRKKALLYSIIAHIKNMITGTINGYRYYLKVISTHFPISVKV--SGDEVQVSNL 116
Query: 121 LGEKKVRKVDMLDGVTV-VRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFL 179
+GEK +R+ +L GV V V+ E +++++G+DI V+++AA I + D R F
Sbjct: 117 IGEKNIRRAKILPGVKVTVKGE----DIVVEGSDIYNVAQTAANIESSTKIVGYDRRIFS 172
Query: 180 DGIYVSERGTI 190
DGIY+ ++ I
Sbjct: 173 DGIYIYKKEVI 183
>sp|Q8PV34|RL6_METMA 50S ribosomal protein L6P OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rpl6p PE=3 SV=1
Length = 176
Score = 104 bits (259), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 100/182 (54%), Gaps = 11/182 (6%)
Query: 7 SETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGS 66
+ T++IP+GV + ++ + +GP+G + R F + + + E + +DA
Sbjct: 6 ARTIEIPEGVSVSLSQDVFTAKGPKGTVERTFWYPGIKIEVREGE------VVVDAESSR 59
Query: 67 RKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKV 126
++ A + T SH+ NLI GV++G+ KM VYAHFP+ + K++ I NFLGEKK
Sbjct: 60 KEQKAMVGTFASHLKNLIIGVSEGFECKMNIVYAHFPMQVKV--EGKTLVIGNFLGEKKP 117
Query: 127 RKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
R +L V S +E+++ G + E V ++AA I QK +K D R F DGIY+ +
Sbjct: 118 RIAKILGETKVKVS---GNEIVVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQ 174
Query: 187 RG 188
+
Sbjct: 175 KA 176
>sp|A6UQ60|RL6_METVS 50S ribosomal protein L6P OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=rpl6p PE=3 SV=1
Length = 182
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 103/186 (55%), Gaps = 15/186 (8%)
Query: 5 LSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
L E ++IP V +++N + V+ L R+ ++ + + K+ +++ F
Sbjct: 6 LIREEIEIPGNVSVEVNGSEVVVKSGAKVLKRELAFPGIEIKMENE------KVVVESTF 59
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASI-GNANKSIEIRNFLGE 123
+ +A + T SH+ N+I GV++G+ YK+ YAHFP+ + GN ++ I NFLGE
Sbjct: 60 PKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGN---TVIIDNFLGE 116
Query: 124 KKVRKVDMLDGVTVVRSEKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGI 182
K R +++GVTV KV +E+I+ G + E V ++AA I Q VK +D R F DGI
Sbjct: 117 KYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGI 172
Query: 183 YVSERG 188
Y+ E+
Sbjct: 173 YIVEKA 178
>sp|P14030|RL6_METVA 50S ribosomal protein L6P OS=Methanococcus vannielii GN=rpl6p PE=3
SV=1
Length = 182
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 103/186 (55%), Gaps = 15/186 (8%)
Query: 5 LSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
L E ++IP V +++N + V+ L R+ ++ + + K+ +++ F
Sbjct: 6 LIREEIEIPGNVSVEVNGSEVVVKSGAKVLKRELAFPGIEIKMENE------KVVVESTF 59
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASI-GNANKSIEIRNFLGE 123
+ +A + T SH+ N+I GV++G+ YK+ YAHFP+ + GN ++ I NFLGE
Sbjct: 60 PKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGN---TVIIDNFLGE 116
Query: 124 KKVRKVDMLDGVTVVRSEKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGI 182
K R +++GVTV KV +E+I+ G + E V ++AA I Q VK +D R F DGI
Sbjct: 117 KYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGI 172
Query: 183 YVSERG 188
Y+ E+
Sbjct: 173 YIVEKA 178
>sp|Q18GG5|RL6_HALWD 50S ribosomal protein L6P OS=Haloquadratum walsbyi (strain DSM
16790) GN=rpl6p PE=3 SV=1
Length = 182
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 99/184 (53%), Gaps = 9/184 (4%)
Query: 5 LSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
++ ++IP+ V +++ + VEGP G ++R + ++ + DE+ + I+
Sbjct: 1 MTRTAIEIPENVSAEVSNLALTVEGPNGSVTRTLWYPSVTVSV--DEDADADAVVIETDE 58
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEK 124
KTSA + T SHV N+I GVT G+ Y+M YAHFP+ S+ + I NFLGEK
Sbjct: 59 TDAKTSATVGTFESHVSNMIHGVTDGWSYEMEVYYAHFPMQVSV--EGDEVIIENFLGEK 116
Query: 125 KVRKVDMLDGVTVVRSEKVKDELI-LDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 183
R+ + V ++ E++ L G E V ++AA I Q V +KD R F DG+Y
Sbjct: 117 ASRRTPIRGDTNV----QIDGEMVTLTGPSKEDVGQTAADIEQLTRVTDKDTRIFQDGVY 172
Query: 184 VSER 187
++++
Sbjct: 173 ITQK 176
>sp|Q3IMX2|RL6_NATPD 50S ribosomal protein L6P OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=rpl6p PE=3 SV=1
Length = 177
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 95/177 (53%), Gaps = 11/177 (6%)
Query: 10 MDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKT 69
++IPD V ++ + VEGP G ++R + ++ D E G ++ D + KT
Sbjct: 5 IEIPDEVTATMDHLEVTVEGPNGSVTRRLWYPDI----TVDVEDGAVVIETDD--DNAKT 58
Query: 70 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKV 129
+ + T SHV N+ GVT+G+ Y M Y+HFP+ S+ + I I NFLGEK RK
Sbjct: 59 RSTVGTFESHVTNMFHGVTEGWEYSMEVFYSHFPMQVSVEGGD--IVIENFLGEKAPRKT 116
Query: 130 DMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
+ +V E +EL + G IE V ++AA I Q V +KD R F DG+Y++E
Sbjct: 117 PVRGDTSV---EVDGEELTVSGPSIEDVGQTAADIEQLTRVSDKDTRVFQDGVYITE 170
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,738,169
Number of Sequences: 539616
Number of extensions: 2574858
Number of successful extensions: 8796
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 378
Number of HSP's that attempted gapping in prelim test: 7996
Number of HSP's gapped (non-prelim): 714
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)