Query 029373
Match_columns 194
No_of_seqs 154 out of 1046
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 19:28:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029373.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029373hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_F 60S ribosomal protein L 100.0 5.3E-73 1.8E-77 466.8 19.6 189 1-193 1-189 (190)
2 4a17_E RPL9, 60S ribosomal pro 100.0 6.9E-73 2.4E-77 465.4 17.1 187 1-193 1-188 (188)
3 3u5e_H L8, RP24, YL11, 60S rib 100.0 4.4E-72 1.5E-76 461.6 19.8 188 1-193 1-190 (191)
4 2zkr_e 60S ribosomal protein L 100.0 4.9E-71 1.7E-75 455.8 17.2 187 1-193 1-190 (192)
5 3j21_F 50S ribosomal protein L 100.0 1.2E-69 3.9E-74 444.9 17.7 177 5-192 6-182 (184)
6 1vq8_E 50S ribosomal protein L 100.0 1.5E-69 5E-74 442.0 18.0 176 7-193 3-178 (178)
7 3v2d_H 50S ribosomal protein L 100.0 1.8E-61 6.2E-66 395.3 14.9 171 2-189 1-174 (180)
8 1rl6_A Protein (ribosomal prot 100.0 3.1E-59 1.1E-63 381.1 15.1 168 3-187 1-171 (177)
9 1nkw_E 50S ribosomal protein L 100.0 5.3E-58 1.8E-62 382.1 21.3 169 3-188 29-200 (212)
10 3r8s_G 50S ribosomal protein L 100.0 6.2E-59 2.1E-63 379.1 11.7 166 3-185 1-169 (176)
11 3bbo_I Ribosomal protein L6; l 100.0 3.7E-58 1.3E-62 385.8 10.0 170 1-187 42-215 (223)
12 2zjr_E 50S ribosomal protein L 100.0 4.4E-59 1.5E-63 382.4 0.1 169 2-187 1-172 (185)
13 2cql_A OK/SW-CL.103, 60S ribos 100.0 3E-29 1E-33 187.1 6.4 91 1-94 8-98 (100)
14 2bol_A TSP36, small heat shock 82.1 5.5 0.00019 34.3 8.3 45 13-63 125-186 (314)
15 2cql_A OK/SW-CL.103, 60S ribos 73.2 2.8 9.6E-05 30.2 3.3 24 128-154 16-39 (100)
16 3j21_F 50S ribosomal protein L 59.4 7.9 0.00027 30.9 3.6 22 9-30 121-142 (184)
17 1vq8_E 50S ribosomal protein L 57.2 9.3 0.00032 30.3 3.7 22 9-30 116-137 (178)
18 4fei_A Heat shock protein-rela 51.6 21 0.00073 24.9 4.5 45 13-63 29-92 (102)
19 1rl6_A Protein (ribosomal prot 50.1 13 0.00046 29.3 3.5 13 155-167 62-74 (177)
20 3u5e_H L8, RP24, YL11, 60S rib 50.0 13 0.00044 29.8 3.4 22 9-30 125-149 (191)
21 3gla_A Low molecular weight he 49.9 33 0.0011 23.5 5.3 18 13-30 27-44 (100)
22 3iz5_F 60S ribosomal protein L 48.4 18 0.0006 29.0 4.0 12 156-167 68-79 (190)
23 3v2d_H 50S ribosomal protein L 47.5 14 0.00048 29.2 3.3 13 155-167 63-75 (180)
24 2zkr_e 60S ribosomal protein L 46.6 12 0.00041 30.0 2.7 13 129-141 10-22 (192)
25 1nkw_E 50S ribosomal protein L 44.6 16 0.00055 29.8 3.3 23 9-31 141-164 (212)
26 4eld_A MJ16.5-P1, small heat s 44.4 40 0.0014 25.5 5.4 18 13-30 79-96 (161)
27 4a17_E RPL9, 60S ribosomal pro 43.1 16 0.00054 29.2 2.9 22 9-30 123-147 (188)
28 3q9p_A Heat shock protein beta 40.3 17 0.00059 24.6 2.4 19 13-31 20-38 (85)
29 2zjr_E 50S ribosomal protein L 39.3 14 0.00047 29.5 2.0 23 9-31 114-137 (185)
30 3r8s_G 50S ribosomal protein L 36.5 25 0.00087 27.6 3.2 23 8-30 112-135 (176)
31 2ctf_A Vigilin; K homology typ 34.8 62 0.0021 22.8 4.8 32 134-167 58-89 (102)
32 3bbo_I Ribosomal protein L6; l 34.5 16 0.00053 30.1 1.7 22 9-30 157-179 (223)
33 4fqn_A Malcavernin; helical do 31.5 20 0.00068 25.8 1.6 17 153-169 30-46 (98)
34 3j20_L 30S ribosomal protein S 30.9 41 0.0014 24.0 3.2 30 145-174 4-33 (102)
35 2y1y_A Alpha-crystallin B chai 30.3 25 0.00087 23.9 2.0 19 13-31 19-37 (90)
36 2w7a_A LINE-1 ORF1P; RNA-bindi 28.5 30 0.001 24.9 2.1 28 152-180 73-100 (100)
37 3v5w_G G gamma-I, guanine nucl 27.7 15 0.0005 25.4 0.3 19 151-169 30-48 (77)
38 2wj5_A Heat shock protein beta 27.6 30 0.001 24.2 2.0 20 13-32 24-43 (101)
39 3l1e_A Alpha-crystallin A chai 27.2 30 0.001 24.4 2.0 19 13-31 25-43 (106)
40 3r8n_J 30S ribosomal protein S 27.1 30 0.001 24.4 1.9 27 146-172 3-29 (98)
41 3d3c_J 30S ribosomal protein S 26.9 56 0.0019 22.7 3.3 28 145-172 11-38 (87)
42 3r2c_J Protein NUSE, 30S ribos 25.2 64 0.0022 22.2 3.3 27 145-171 6-32 (83)
43 2jug_A TUBC protein; docking d 23.2 30 0.001 23.1 1.2 26 14-39 17-42 (78)
44 2opv_A KHSRP protein; KH domai 20.5 1.4E+02 0.0048 19.8 4.3 21 146-167 62-82 (85)
45 1qys_A TOP7; alpha-beta, novel 20.3 58 0.002 22.7 2.2 22 14-35 77-100 (106)
46 2klr_A Alpha-crystallin B chai 20.2 47 0.0016 25.8 2.0 19 13-31 86-104 (175)
No 1
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=100.00 E-value=5.3e-73 Score=466.77 Aligned_cols=189 Identities=81% Similarity=1.267 Sum_probs=179.7
Q ss_pred CccccceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCceEEEEeccccccCCcEEEEEeccCChhhhhhHHhHHHHH
Q 029373 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (194)
Q Consensus 1 m~~~~~~~~I~IP~~V~v~i~~~~i~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~i~v~~~~~~k~~~a~~Gt~rsli 80 (194)
|++++.+.||.||+||+|+++++.|+|+||+|+|+++|+|..+++++.. +++.+.+++|+++|+++|+|||+||||
T Consensus 1 Mk~i~~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~----~~~~l~v~~~~~~kk~~a~~gt~rsli 76 (190)
T 3iz5_F 1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLE----GGRKLQVDAWFGTRRTMAAIRTAISHV 76 (190)
T ss_dssp CCCCCCCEEEECCTTCEEEEETTEEEEEETTEEEEEECCCTTEEEEEET----TTTEEEEEESCCCHHHHHHHHHHHHHH
T ss_pred CcccccCccEECCCCCEEEEeCCEEEEECCCceEEEEccCCcEEEEEEc----CCCEEEEEECCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987678888321 568999999999999999999999999
Q ss_pred hhceeeecceeEEEEEEEEEEecceeEeccCCCeEEEecccCceeeEEEeCCCCeEEEEcCCcccEEEEEeccHhHHHHH
Q 029373 81 GNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRS 160 (194)
Q Consensus 81 ~Nmi~GVt~Gf~~~L~lvGvGyp~ra~~~~~g~~l~lkn~LG~Sh~i~~~iP~gi~v~~~~~~k~~I~i~G~Dkq~Vgq~ 160 (194)
+|||+|||+||+|+|+++|+|||+.|.++++|+.|.|+||||||||+.+++|+||+|++++|++|+|+|+|+|||+|||+
T Consensus 77 ~NmI~GVt~Gf~~kL~lvgvgyr~~~~i~~~G~~l~l~N~LG~sh~v~~~ip~GV~v~v~~~~k~eIil~G~Dke~Vgq~ 156 (190)
T 3iz5_F 77 QNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRS 156 (190)
T ss_dssp HHHHHHHHTCEEEEEEEECSSSCCEEEEETTTTEEEEESGGGCSSCEEEECCSSCEEEECCTTTCEEEEEESCHHHHHHH
T ss_pred HhheeeeccCEEEEEEEEEEcccceeEEccCCCEEEEEecCCccccEEEECCCCeEEEEcCCCCCEEEEEECCHHHHHHH
Confidence 99999999999999999999998778777789999999999999999999999999999999777999999999999999
Q ss_pred HHHHhcccccCCCceeeeeceEEEeeeeeeeeC
Q 029373 161 AALINQKCHVKNKDIRKFLDGIYVSERGTIFEE 193 (194)
Q Consensus 161 AA~Ir~~~~~K~kd~r~f~DGiyv~~k~~~~~~ 193 (194)
||+||++|++|+||+|+|||||||+||++++++
T Consensus 157 AA~Irq~~~vk~kD~R~F~DGiyv~ek~~~~~~ 189 (190)
T 3iz5_F 157 AALINQKCHVKNKDIRKFLDGIYVSDKGTITED 189 (190)
T ss_dssp HHHHHHHTCCCSSCTTTCCCEEEECCCCCCCCC
T ss_pred HHHHHhhccccCCcccEeecCEEEEeeeEEecc
Confidence 999999999999999999999999999999886
No 2
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=100.00 E-value=6.9e-73 Score=465.43 Aligned_cols=187 Identities=41% Similarity=0.792 Sum_probs=177.6
Q ss_pred CccccceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCceEEEEecccccc-CCcEEEEEeccCChhhhhhHHhHHHH
Q 029373 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEET-GKRKLKIDAWFGSRKTSAAIRTALSH 79 (194)
Q Consensus 1 m~~~~~~~~I~IP~~V~v~i~~~~i~VkGp~G~l~~~l~~~~v~i~~~~~~~~-~~~~i~v~~~~~~k~~~a~~Gt~rsl 79 (194)
|++++.+.||.||+||+|+++++.|+|+||+|+|+++|+|..++++ . +++.+.+++|+++|+++|+|||+|||
T Consensus 1 Mk~i~~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~------~~~~~~l~v~~~~~~kk~~a~~gt~rsl 74 (188)
T 4a17_E 1 MRHLLTEVNVPIPDKVTITAKQRVVEVKGPLGTIKRAFRYASVDIQ------KPTADNVKLQIWQASRKERAVLQSIASQ 74 (188)
T ss_dssp CCEEEEEEECCCCTTCEEEEETTEEEEEETTEEEEEECTTSCCEEC------CCBTTBCEEEEEEECHHHHHHHHHHHHH
T ss_pred CceeeecccEECCCCcEEEEeCCEEEEEcCCeEEEEEccCCeEEEE------EccCCeEEEEECCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987678887 4 56889999999999999999999999
Q ss_pred HhhceeeecceeEEEEEEEEEEecceeEeccCCCeEEEecccCceeeEEEeCCCCeEEEEcCCcccEEEEEeccHhHHHH
Q 029373 80 VGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSR 159 (194)
Q Consensus 80 i~Nmi~GVt~Gf~~~L~lvGvGyp~ra~~~~~g~~l~lkn~LG~Sh~i~~~iP~gi~v~~~~~~k~~I~i~G~Dkq~Vgq 159 (194)
|+|||+|||+||+|+|+++|+|||+.|.++++|+.|.|+||||||||+.+++|+||+|++++|++|+|+|+|+|||+|||
T Consensus 75 i~NmI~GVt~Gf~~kL~lvgvgyr~~~~v~~~G~~l~l~N~LG~sh~v~~~ip~gv~v~v~~~~k~eIil~G~Dke~Vgq 154 (188)
T 4a17_E 75 IKNMIRGVTEGYKFKMKLAFAHFPIQEAVAKDGSSIEIKHFLGEKRIRRIQALPGVKISRKDEEKNTLTLQGIDLNNVSQ 154 (188)
T ss_dssp HHHHHHHHHSCEEEEEEEECSSSCCEEEECSSSCEEEEECGGGCCCEEEEECCTTCEEECCTTSSSEEEEEESCHHHHHH
T ss_pred HHhheEeeccCeEEEEEEEEEcccceEEEccCCCEEEEEeccCCcccEEEECCCCeEEEECCCCCCEEEEEEcCHHHHHH
Confidence 99999999999999999999999877888778999999999999999999999999999999977799999999999999
Q ss_pred HHHHHhcccccCCCceeeeeceEEEeeeeeeeeC
Q 029373 160 SAALINQKCHVKNKDIRKFLDGIYVSERGTIFEE 193 (194)
Q Consensus 160 ~AA~Ir~~~~~K~kd~r~f~DGiyv~~k~~~~~~ 193 (194)
+||+||++|++|+||+|+|||||||+||++++++
T Consensus 155 ~AA~Ir~~~~vk~kD~R~F~DGiyv~ek~~~~~~ 188 (188)
T 4a17_E 155 TCALIHQSCLVKEKDIRQFLDGIYVSDKRLAMNE 188 (188)
T ss_dssp HHHHHHHHTCCCSSCHHHHCCEEEEEEEEECC--
T ss_pred HHHHHHhhcccCCCcccEeecCeEEEEeEEEecC
Confidence 9999999999999999999999999999999875
No 3
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=100.00 E-value=4.4e-72 Score=461.64 Aligned_cols=188 Identities=52% Similarity=0.885 Sum_probs=177.7
Q ss_pred CccccceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCceEEEEeccccccCCcEEEEEeccCChhhhhhHHhHHHHH
Q 029373 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (194)
Q Consensus 1 m~~~~~~~~I~IP~~V~v~i~~~~i~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~i~v~~~~~~k~~~a~~Gt~rsli 80 (194)
|++++.+.||.||+||+|+++++.|+|+||+|+|+++|+|..+++++ .+++.+.+++|+++|+++|+|||+||||
T Consensus 1 Mk~i~~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~-----~~~~~l~v~~~~~~kk~~a~~gt~rsli 75 (191)
T 3u5e_H 1 MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTK-----VNNQLIKVAVHNGGRKHVAALRTVKSLV 75 (191)
T ss_dssp CCEEEEEEEEECCTTCEEEEETTEEEEEETTEEEEEECTTTCCEEEE-----EETTEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred CceeeecccEECCCCcEEEEeCCEEEEEcCCeEEEEEccCCcEEEEE-----ecCCeEEEEECCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999975666652 1348899999999999999999999999
Q ss_pred hhceeeecceeEEEEEEEEEEecceeEe--ccCCCeEEEecccCceeeEEEeCCCCeEEEEcCCcccEEEEEeccHhHHH
Q 029373 81 GNLITGVTKGYRYKMRFVYAHFPINASI--GNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVS 158 (194)
Q Consensus 81 ~Nmi~GVt~Gf~~~L~lvGvGyp~ra~~--~~~g~~l~lkn~LG~Sh~i~~~iP~gi~v~~~~~~k~~I~i~G~Dkq~Vg 158 (194)
+|||+|||+||+|+|+++|+||||+|++ +++|+.|.|+||||||||+.+++|+||+|++++|++|+|+|+|+|||+||
T Consensus 76 ~NmI~GVt~Gf~~kL~lvgvgyri~a~v~~~~~G~~l~l~n~LG~sh~v~~~ip~Gv~v~v~~~~kteIil~G~Dke~Vg 155 (191)
T 3u5e_H 76 DNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVS 155 (191)
T ss_dssp HHHHHHHHTCEEEEEEEECSSSCCEEEEECSSSCCEEEEECGGGCSSCEEEECCTTEEEEECTTSTTEEEEEESCHHHHH
T ss_pred HhheeeeccCEEEEEEEEEEeeeEEEEEEEcCCCCEEEEEeccCCcccEEEECCCCEEEEECCCCCCEEEEEECCHHHHH
Confidence 9999999999999999999999988988 77899999999999999999999999999999975579999999999999
Q ss_pred HHHHHHhcccccCCCceeeeeceEEEeeeeeeeeC
Q 029373 159 RSAALINQKCHVKNKDIRKFLDGIYVSERGTIFEE 193 (194)
Q Consensus 159 q~AA~Ir~~~~~K~kd~r~f~DGiyv~~k~~~~~~ 193 (194)
|+||+||++|++|+||+|+|||||||+||++++++
T Consensus 156 q~AA~Irq~~~vk~kD~R~FlDGiyv~ek~~~~~~ 190 (191)
T 3u5e_H 156 QNAADLQQICRVRNKDIRKFLDGIYVSHKGFITED 190 (191)
T ss_dssp HHHHHHHHTTCCCSSCTTTCCCEEEEEEEEESSSC
T ss_pred HHHHHHHhhcccCCCcccEeecCeEEEEeeEEEec
Confidence 99999999999999999999999999999999876
No 4
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=4.9e-71 Score=455.82 Aligned_cols=187 Identities=59% Similarity=0.934 Sum_probs=161.9
Q ss_pred CccccceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCceEEEEeccccccCCcE---EEEEeccCChhhhhhHHhHH
Q 029373 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRK---LKIDAWFGSRKTSAAIRTAL 77 (194)
Q Consensus 1 m~~~~~~~~I~IP~~V~v~i~~~~i~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~---i~v~~~~~~k~~~a~~Gt~r 77 (194)
|+.+..+.||.||+||+|+++++.|+|+||+|+|+++|++..+++. .+++. +.+++|+++++++|+|||+|
T Consensus 1 Mk~~~~k~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~~~v~i~------~~~~~~~~i~v~~~~~~k~~~a~~Gt~r 74 (192)
T 2zkr_e 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELS------LLGKKKKRLRVDKWWGNRKELATVRTIC 74 (192)
T ss_dssp ---------CCCCTTCEEEEETTEEEEEETTEEEEEECCSSSCEEE------EETTTTCEEEEECSCCCHHHHHHHHHHH
T ss_pred CCcccccCcEEcCCCCEEEEeCCEEEEECCCeEEEEEeCCCCEEEE------EecCceeEEEEEcCCCCHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999997567777 44577 99999999999999999999
Q ss_pred HHHhhceeeecceeEEEEEEEEEEecceeEeccCCCeEEEecccCceeeEEEeCCCCeEEEEcCCcccEEEEEeccHhHH
Q 029373 78 SHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELV 157 (194)
Q Consensus 78 sli~Nmi~GVt~Gf~~~L~lvGvGyp~ra~~~~~g~~l~lkn~LG~Sh~i~~~iP~gi~v~~~~~~k~~I~i~G~Dkq~V 157 (194)
|||+|||+|||+||+++|+++|+|||+.+.++++|+.|.|+|+||||||+.+++|+||+++++++++|+|+|+|+|||+|
T Consensus 75 sli~NmI~GVt~Gf~~~L~lvGvGyra~v~~e~~g~~l~l~N~LG~Sh~v~~~iP~gv~v~v~~~~~t~I~v~GiDKq~V 154 (192)
T 2zkr_e 75 SHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELV 154 (192)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECSSSCCEEEECTTCSEEEEESGGGCSSCEEEECCSSCEEEECSSCSSEEEEEESCHHHH
T ss_pred HHHhCEEEeeccCcEEEEEEEEecceeEEEEccCCCEEEEeCcCCCcccEEeeCCCCeEEEEcCCCCCEEEEEeCCHHHH
Confidence 99999999999999999999999996555587789999999999999999999999999999988546899999999999
Q ss_pred HHHHHHHhcccccCCCceeeeeceEEEeeeeeeeeC
Q 029373 158 SRSAALINQKCHVKNKDIRKFLDGIYVSERGTIFEE 193 (194)
Q Consensus 158 gq~AA~Ir~~~~~K~kd~r~f~DGiyv~~k~~~~~~ 193 (194)
|||||+||++|++|+||+|+|||||||+||+++.++
T Consensus 155 gq~AA~IR~~~~vk~kD~R~F~Dgiyv~~k~~~~~~ 190 (192)
T 2zkr_e 155 SNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQA 190 (192)
T ss_dssp HHHHHHHHHHTCCSSSCTTTCCCEEEEEEC------
T ss_pred HHHHHHHHhhCcCCCCCccEeecCEEEEEecccccc
Confidence 999999999999999999999999999999988765
No 5
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.2e-69 Score=444.94 Aligned_cols=177 Identities=38% Similarity=0.628 Sum_probs=168.2
Q ss_pred cceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCceEEEEeccccccCCcEEEEEeccCChhhhhhHHhHHHHHhhce
Q 029373 5 LSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLI 84 (194)
Q Consensus 5 ~~~~~I~IP~~V~v~i~~~~i~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~i~v~~~~~~k~~~a~~Gt~rsli~Nmi 84 (194)
.-++||.||+||+|+++++.|+|+||+|+|+++|+|+.++++ .+++.+.+++|+++|+++|+|||+||||+|||
T Consensus 6 ~~~~~I~IP~gV~v~i~~~~V~VkGpkG~L~~~~~~~~v~i~------~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI 79 (184)
T 3j21_F 6 WIREEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIF------TEDGNVVIYKDFPRRKDVAIARTFAAHIRNMI 79 (184)
T ss_dssp SCEEEEECCSSCEEEESSSEEEEECSSCEEEEECCCTTCEEE------EETTEEEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred heeEEEeCCCCcEEEEeCCEEEEEcCCeEEEEEecCCcEEEE------EeCCEEEEEECCCCHHHHHHHHHHHHHHHhhh
Confidence 458899999999999999999999999999999976688888 55689999999999999999999999999999
Q ss_pred eeecceeEEEEEEEEEEecceeEeccCCCeEEEecccCceeeEEEeCCCCeEEEEcCCcccEEEEEeccHhHHHHHHHHH
Q 029373 85 TGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALI 164 (194)
Q Consensus 85 ~GVt~Gf~~~L~lvGvGyp~ra~~~~~g~~l~lkn~LG~Sh~i~~~iP~gi~v~~~~~~k~~I~i~G~Dkq~Vgq~AA~I 164 (194)
+|||+||+|+|+++|+||||||++ +|+.|.|+||||||||+.+++|+||+|+++++ +|+|+|+|||+|||+||+|
T Consensus 80 ~GVt~Gf~~kL~lvgvgypira~~--~g~~l~l~n~LG~sh~v~~~ip~gv~v~v~~~---~Iil~G~Dke~Vgq~AA~I 154 (184)
T 3j21_F 80 KGVTEGFTYKLKVVYSHFPISVKV--QGDEVIIENFLGEKAPRKAKILPGVTVKVRGQ---EIIVEGIDKEAVGQTAANI 154 (184)
T ss_dssp HHHHTCEEEEEEEECSSSCCEEEE--ETTEEEEECGGGCSSCEEEECCTTEEEEEETT---EEEEEESCHHHHHHHHHHH
T ss_pred eeeccCeEEEEEEEEecccceEEE--cCCEEEEEecCCccccEEEECCCCeEEEecCC---EEEEEECCHHHHHHHHHHH
Confidence 999999999999999999999999 79999999999999999999999999999984 7999999999999999999
Q ss_pred hcccccCCCceeeeeceEEEeeeeeeee
Q 029373 165 NQKCHVKNKDIRKFLDGIYVSERGTIFE 192 (194)
Q Consensus 165 r~~~~~K~kd~r~f~DGiyv~~k~~~~~ 192 (194)
|++|+|||||+|+|||||||+||+....
T Consensus 155 r~~~~vK~KDiR~F~DGiyv~ek~~~~~ 182 (184)
T 3j21_F 155 EQATRITKWDRRIFQDGIYIVEKAGKPI 182 (184)
T ss_dssp HHHHCCCSSCSSSCCCEEEESCSSSCCC
T ss_pred hhccccCCCcccEeeCCEEEEecCcccc
Confidence 9999999999999999999999986543
No 6
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=100.00 E-value=1.5e-69 Score=442.02 Aligned_cols=176 Identities=31% Similarity=0.528 Sum_probs=164.3
Q ss_pred eeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCceEEEEeccccccCCcEEEEEeccCChhhhhhHHhHHHHHhhceee
Q 029373 7 SETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITG 86 (194)
Q Consensus 7 ~~~I~IP~~V~v~i~~~~i~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~i~v~~~~~~k~~~a~~Gt~rsli~Nmi~G 86 (194)
+.||.||+||+|+++++.|+|+||+|+|+++|+++.+++. .+++.+.+++|+++++++|+|||+||||+|||+|
T Consensus 3 ~~pI~IP~gV~v~i~~~~vtVkGpkG~L~~~~~~~~v~i~------~~~~~i~v~~~~~~k~~~a~~Gt~rsli~Nmi~G 76 (178)
T 1vq8_E 3 RVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVS------VDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHG 76 (178)
T ss_dssp EEEEECCTTCEEEEETTEEEEEETTEEEEEECCCTTCEEE------EETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cccEEcCCCCEEEEeCCEEEEECCCeEEEEEEECCeEEEE------EECCEEEEEcCCCCHHHHHHHHHHHHHHcCEEEE
Confidence 5799999999999999999999999999999955588888 5668899999999999999999999999999999
Q ss_pred ecceeEEEEEEEEEEecceeEeccCCCeEEEecccCceeeEEEeCCCCeEEEEcCCcccEEEEEeccHhHHHHHHHHHhc
Q 029373 87 VTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166 (194)
Q Consensus 87 Vt~Gf~~~L~lvGvGyp~ra~~~~~g~~l~lkn~LG~Sh~i~~~iP~gi~v~~~~~~k~~I~i~G~Dkq~Vgq~AA~Ir~ 166 (194)
||+||+|+|+++|+||||||++ +|+.|.|+|+||||||+.+++|+||++++++ |+|+|+|+|||+||||||+||+
T Consensus 77 Vt~Gf~~~L~ivGvGypira~~--~g~~l~l~N~LG~shpv~~~ip~gi~v~v~~---~~I~v~G~Dkq~Vgq~AA~Ir~ 151 (178)
T 1vq8_E 77 VTEGWEYGMEVFYSHFPMQVNV--EGDEVVIENFLGEKAPRRTTIHGDTDVEIDG---EELTVSGPDIEAVGQTAADIEQ 151 (178)
T ss_dssp HHTCEEEEEEEECSSSCCEEEE--ETTEEEEESGGGCSSCEEEECCTTCEEEEET---TEEEEEESCHHHHHHHHHHHHH
T ss_pred EccCeEEEEEEEeeCCceEEEE--cCCEEEEEccccccccEEEeCCCCeEEEEeC---CEEEEEECCHHHHHHHHHHHhc
Confidence 9999999999999999999999 7999999999999999999999999999997 4799999999999999999999
Q ss_pred ccccCCCceeeeeceEEEeeeeeeeeC
Q 029373 167 KCHVKNKDIRKFLDGIYVSERGTIFEE 193 (194)
Q Consensus 167 ~~~~K~kd~r~f~DGiyv~~k~~~~~~ 193 (194)
+|++||||+|+|+|||||+||++..++
T Consensus 152 ~r~pKGKGIr~F~DGiyi~~k~~~~~~ 178 (178)
T 1vq8_E 152 LTRINDKDVRVFQDGVYITRKPNRGDA 178 (178)
T ss_dssp TTCCSSSCTTTCCCEEEEEECC-----
T ss_pred cCCCCCCceeEEECCEEEEecccccCC
Confidence 999999999999999999999987653
No 7
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=100.00 E-value=1.8e-61 Score=395.31 Aligned_cols=171 Identities=18% Similarity=0.288 Sum_probs=162.8
Q ss_pred ccccceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCceEEEEeccccccCCcEEEEEeccCChhhhhhHHhHHHHHh
Q 029373 2 KTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVG 81 (194)
Q Consensus 2 ~~~~~~~~I~IP~~V~v~i~~~~i~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~i~v~~~~~~k~~~a~~Gt~rsli~ 81 (194)
+|++|+.||.||+||+|+++++.|+|+||+|+|+++|++ .++++ .+++.|.|++|+++++++|+|||+||||+
T Consensus 1 mSrigk~pI~IP~gV~v~i~~~~v~VkGpkG~L~~~~~~-~v~i~------~~~~~l~v~~~~~~kk~~a~~gt~rsli~ 73 (180)
T 3v2d_H 1 MSRIGRLPIPVPKGVSVEVAPGRVKVKGPKGELEVPVSP-EMRVV------VEEGVVRVERPSDERRHKSLHGLTRTLIA 73 (180)
T ss_dssp -CCTTTSCEECCTTCEEEEETTEEEEECSSCEEEEECCT-TSEEE------EETTEEEEECSCSCHHHHHHHHHHHHHHH
T ss_pred CCcccCceeeCCCCcEEEEeCCEEEEEeCCcEEEEEeCC-CEEEE------EECCEEEEEECCCcHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999997 88888 45689999999999999999999999999
Q ss_pred hceeeecceeEEEEEEEEEEecceeEeccCCCeEEEecccCceeeEEEeCCCCeEEEEcCCcccEEEEEeccHhHHHHHH
Q 029373 82 NLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSA 161 (194)
Q Consensus 82 Nmi~GVt~Gf~~~L~lvGvGyp~ra~~~~~g~~l~lkn~LG~Sh~i~~~iP~gi~v~~~~~~k~~I~i~G~Dkq~Vgq~A 161 (194)
|||+|||+||+++|+++|+|| ||++ +|+.|.| +||||||+.++||+||+|+++++ |+|+|+|+|||+|||||
T Consensus 74 NmI~GVt~Gf~~kL~lvgvgy--ra~~--~g~~l~l--~LG~sh~v~~~ip~gv~v~v~~~--t~Iil~G~Dke~Vgq~A 145 (180)
T 3v2d_H 74 NAVKGVSEGYSKELLIKGIGY--RARL--VGRALEL--TVGFSHPVVVEPPEGITFEVPEP--TRVRVSGIDKQKVGQVA 145 (180)
T ss_dssp HHHHHHHTCEEEEEEEESTTC--EEEE--ETTEEEE--ECSSSSCEEECCCTTCEEECSST--TEEEEEESCHHHHHHHH
T ss_pred hhEEeecCCcEEEEEEEEEee--EEEE--CCCEEEE--EecCCeeEEEECCCCeEEEECCC--CEEEEEECcHHHHHHHH
Confidence 999999999999999999999 7999 7999999 89999999999999999999998 68999999999999999
Q ss_pred HHHhcccc---cCCCceeeeeceEEEeeeee
Q 029373 162 ALINQKCH---VKNKDIRKFLDGIYVSERGT 189 (194)
Q Consensus 162 A~Ir~~~~---~K~kd~r~f~DGiyv~~k~~ 189 (194)
|+||+||+ |||||+|. ||.||.+|+-
T Consensus 146 A~Ir~~r~PepYKGKGIry--~~e~I~~K~g 174 (180)
T 3v2d_H 146 ANIRAIRKPSAYHEKGIYY--AGEPVRLKPG 174 (180)
T ss_dssp HHHHHHTCCCSSSSCEEEE--TTCCCCCCCC
T ss_pred HHhcccCCCCCcCCCcccC--CCEEEEEeCc
Confidence 99999998 99999997 9999999864
No 8
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=100.00 E-value=3.1e-59 Score=381.14 Aligned_cols=168 Identities=24% Similarity=0.415 Sum_probs=150.7
Q ss_pred cccceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCceEEEEeccccccCCcEEEEEeccCChhhhhhHHhHHHHHhh
Q 029373 3 TILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGN 82 (194)
Q Consensus 3 ~~~~~~~I~IP~~V~v~i~~~~i~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~i~v~~~~~~k~~~a~~Gt~rsli~N 82 (194)
|++|+.||.||+||+|+++++.|+|+||+|+|+++|++ .+++. .+++.+.+++|+++++++|+|||+||||+|
T Consensus 1 srigk~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~-~v~i~------~~~~~l~v~~~~~~k~~~a~~Gt~rsli~N 73 (177)
T 1rl6_A 1 SRVGKKPIEIPAGVTVTVNGNTVTVKGPKGELTRTFHP-DMTIT------VEGNVITVTRPSDEKHHRALHGTTRSLLAN 73 (177)
T ss_dssp ------CEECCTTCEEEEETTEEEEEETTEEEEEECCT-TCEEE------EETTEEEEECSCCSHHHHHHHHHHHHHHHH
T ss_pred CcccccceEcCCCCEEEEeCCEEEEECCCeEEEEEcCC-CEEEE------EeCCEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999986 88888 566899999999999999999999999999
Q ss_pred ceeeecceeEEEEEEEEEEecceeEeccCCCeEEEecccCceeeEEEeCCCCeEEEEcCCcccEEEEEeccHhHHHHHHH
Q 029373 83 LITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAA 162 (194)
Q Consensus 83 mi~GVt~Gf~~~L~lvGvGyp~ra~~~~~g~~l~lkn~LG~Sh~i~~~iP~gi~v~~~~~~k~~I~i~G~Dkq~Vgq~AA 162 (194)
||+|||+||+++|+++|+|| ||++ +|+.|.| +||||||+.+++|+||+++++++ |+|+|+|+|||+||||||
T Consensus 74 mi~GVt~Gf~~~L~lvGvGy--ra~~--~G~~l~l--~LG~Shpv~~~iP~gi~v~v~~~--t~I~v~G~Dkq~Vgq~AA 145 (177)
T 1rl6_A 74 MVEGVSKGYEKALELVGVGY--RASK--QGKKLVL--SVGYSHPVEIEPEEGLEIEVPSQ--TKIIVKGADKQRVGELAA 145 (177)
T ss_dssp HHHHHHTCEEEEEEEESTTC--EEEE--ETTEEEE--ESSSSSCEEECCCTTEEEEEEET--TEEEEEESCHHHHHHHHH
T ss_pred EEEeEcCCcEEEEEEEeece--EEEe--cCCEEEE--EecCCccEEEeCCCCcEEEECCC--CEEEEEeCCHHHHHHHHH
Confidence 99999999999999999999 8999 7999999 89999999999999999999998 689999999999999999
Q ss_pred HHhcccc---cCCCceeeeeceEEEeee
Q 029373 163 LINQKCH---VKNKDIRKFLDGIYVSER 187 (194)
Q Consensus 163 ~Ir~~~~---~K~kd~r~f~DGiyv~~k 187 (194)
+||+||+ |||||+| ..|-+|-.|
T Consensus 146 ~Ir~~R~PepYKGKGI~--y~~E~i~~K 171 (177)
T 1rl6_A 146 NIRAVRPPEPYKGKGIR--YEGELVRLK 171 (177)
T ss_dssp HHHTTSCCCTTTCCEEE--ETTCCCCC-
T ss_pred HHhccCCCCCcCCCcEe--ECCeEEEEc
Confidence 9999996 9999888 445555444
No 9
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=100.00 E-value=5.3e-58 Score=382.13 Aligned_cols=169 Identities=21% Similarity=0.377 Sum_probs=158.0
Q ss_pred cccceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCceEEEEeccccccCCcEEEEEeccCChhhhhhHHhHHHHHhh
Q 029373 3 TILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGN 82 (194)
Q Consensus 3 ~~~~~~~I~IP~~V~v~i~~~~i~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~i~v~~~~~~k~~~a~~Gt~rsli~N 82 (194)
+++|+.||.||+||+|+++++.|+|+||+|+|+++|++ .+++. .+++.|.|++++++++++|+|||+||||+|
T Consensus 29 SRIgk~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~~-~v~i~------~e~~~i~v~~~~~~k~~ra~~Gt~rslI~N 101 (212)
T 1nkw_E 29 SRIGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNT-ELTVR------QDGDQLLVERPSDAQKHRALHGLTRTLVAN 101 (212)
T ss_pred ccccccceecCCCcEEEEeCCEEEEECCCEEEEEECCC-CeEEE------EECCEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 45699999999999999999999999999999999986 88887 567899999999999999999999999999
Q ss_pred ceeeecceeEEEEEEEEEEecceeEeccCCCeEEEecccCceeeEEEeCCCCeEEEEcCCcccEEEEEeccHhHHHHHHH
Q 029373 83 LITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAA 162 (194)
Q Consensus 83 mi~GVt~Gf~~~L~lvGvGyp~ra~~~~~g~~l~lkn~LG~Sh~i~~~iP~gi~v~~~~~~k~~I~i~G~Dkq~Vgq~AA 162 (194)
||+|||+||+++|+++|+|| ||++ +|+.|+| +||||||+.++||+||+|+++++ |+|+|+|+|||+||||||
T Consensus 102 MI~GVt~Gf~kkLelvGvGY--ra~~--~G~~L~L--~LG~SHpv~~~iP~GI~v~v~~~--t~Iiv~GiDKq~VGq~AA 173 (212)
T 1nkw_E 102 AVKGVSDGYTINLELRGVGF--RAKL--TGKALEM--NIGYSHPVIIEPPAGVTFAVPEP--TRIDVSGIDKQLVGQVAA 173 (212)
T ss_pred EEEeeccCeEEEEEEeeeee--EEEc--CCCEEEE--EccCCccEEEECCCCeEEEeCCC--CEEEEEeCCHHHHHHHHH
Confidence 99999999999999999999 8999 8999999 89999999999999999999998 689999999999999999
Q ss_pred HHhcccc---cCCCceeeeeceEEEeeee
Q 029373 163 LINQKCH---VKNKDIRKFLDGIYVSERG 188 (194)
Q Consensus 163 ~Ir~~~~---~K~kd~r~f~DGiyv~~k~ 188 (194)
+||+||+ |||||+| ..|-+|-.|.
T Consensus 174 ~IR~~R~PEPYKGKGIr--y~~E~I~rK~ 200 (212)
T 1nkw_E 174 NVRKVRKPDAYHGKGVR--FVGEQIALKA 200 (212)
T ss_pred HHhccCCCCCcCCCcEe--ECCeEEEEcC
Confidence 9999996 9999988 5677776554
No 10
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=100.00 E-value=6.2e-59 Score=379.12 Aligned_cols=166 Identities=23% Similarity=0.393 Sum_probs=154.5
Q ss_pred cccceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCceEEEEeccccccCCcEEEEEeccCChhhhhhHHhHHHHHhh
Q 029373 3 TILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGN 82 (194)
Q Consensus 3 ~~~~~~~I~IP~~V~v~i~~~~i~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~i~v~~~~~~k~~~a~~Gt~rsli~N 82 (194)
|++|+.||.||+||+|+++++.|+|+||+|+|+++|++ .++++ .+++.+.|+.|+++++++|+|||+||||+|
T Consensus 1 Srigk~pI~IP~gV~v~i~~~~V~VkGpkG~L~~~~~~-~v~i~------~~~~~l~v~~~~~~k~~~a~~gt~rsli~N 73 (176)
T 3r8s_G 1 SRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLND-AVEVK------HADNTLTFGPRDGYADGWAQAGTARALLNS 73 (176)
T ss_dssp CTTTTSCEECCTTCCCEESSSEEECCBTTBCCEEECCS-SCEEE------EETTEEEEECCTTCSSTHHHHHHHHHHHHH
T ss_pred CCccccceeCCCCcEEEEeCCEEEEEcCCEEEEEECCC-CEEEE------EeCCEEEEEECCCcHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999987 88888 556899999999999999999999999999
Q ss_pred ceeeecceeEEEEEEEEEEecceeEeccCCCeEEEecccCceeeEEEeCCCCeEEEEcCCcccEEEEEeccHhHHHHHHH
Q 029373 83 LITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAA 162 (194)
Q Consensus 83 mi~GVt~Gf~~~L~lvGvGyp~ra~~~~~g~~l~lkn~LG~Sh~i~~~iP~gi~v~~~~~~k~~I~i~G~Dkq~Vgq~AA 162 (194)
||+|||+||+++|+++|+|| ||++ +|+.|.+ +||||||+.++||+||+|+++++ |+|+|+|+|||+||||||
T Consensus 74 mI~GVt~Gf~~kL~lvgvgy--ra~~--~g~~l~l--~LG~sh~v~~~ip~gv~v~v~~~--t~Iil~G~Dke~Vgq~AA 145 (176)
T 3r8s_G 74 MVIGVTEGFTKKLQLVGVGY--RAAV--KGNVINL--SLGFSHPVDHQLPAGITAECPTQ--TEIVLKGADKQVIGQVAA 145 (176)
T ss_dssp TTTHHHHCEEECEEEESTTC--EEEC--SSSEEEE--ECSSSSCEEEECCTTCEEEEEET--TEEEEEESCHHHHHHHHH
T ss_pred HhhhcccCeEEEEEEeeeee--EEEe--CCCEEEE--EecCCeeEEEECCCCeEEEECCC--CEEEEEECcHHHHHHHHH
Confidence 99999999999999999999 7999 8999988 89999999999999999999988 689999999999999999
Q ss_pred HHhccc---ccCCCceeeeeceEEEe
Q 029373 163 LINQKC---HVKNKDIRKFLDGIYVS 185 (194)
Q Consensus 163 ~Ir~~~---~~K~kd~r~f~DGiyv~ 185 (194)
+||+|| ||||||+| ..|-+|-
T Consensus 146 ~Ir~~R~PepYKGKGI~--y~~E~i~ 169 (176)
T 3r8s_G 146 DLRAYRRPEPYKGKGVR--YADEVVR 169 (176)
T ss_dssp HHHHTTCCCSSSCCEEE--ESSCCCC
T ss_pred HhhccCCCCCccCCcee--ECCeEEE
Confidence 999999 59999877 3344443
No 11
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=3.7e-58 Score=385.84 Aligned_cols=170 Identities=19% Similarity=0.347 Sum_probs=158.5
Q ss_pred CccccceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCceEEE-EeccccccCCcEEEEEeccCChhhhhhHHhHHHH
Q 029373 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDF-HLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSH 79 (194)
Q Consensus 1 m~~~~~~~~I~IP~~V~v~i~~~~i~VkGp~G~l~~~l~~~~v~i-~~~~~~~~~~~~i~v~~~~~~k~~~a~~Gt~rsl 79 (194)
++|++|+.||.||+||+|+++++.|+|+||+|+|+++|++ .+++ . .+++.|.+++|+++++++|+|||+|||
T Consensus 42 ~mSrigk~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~~-~v~i~~------~e~~~i~v~~~~~~k~~~a~~Gt~rsl 114 (223)
T 3bbo_I 42 KESRIGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPR-EVELTK------EESGFLRVKKTVETRRANQMHGLFRTL 114 (223)
T ss_dssp CCCCCCCCCCCCSTTSCEEESSSEEEECCSSCCEEEECCS-SCEEEE------CSSSCEEEECSSCCTTHHHHHHHHTTT
T ss_pred ccccccccceecCCCCEEEEeCCEEEEECCCeEEEEEcCC-CEEEEE------ecCCEEEEEcCCCcHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999986 8888 7 677899999999999999999999999
Q ss_pred HhhceeeecceeEEEEEEEEEEecceeEeccCCCeEEEecccCceeeEEEeCCCCeEEEEcCCcccEEEEEeccHhHHHH
Q 029373 80 VGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSR 159 (194)
Q Consensus 80 i~Nmi~GVt~Gf~~~L~lvGvGyp~ra~~~~~g~~l~lkn~LG~Sh~i~~~iP~gi~v~~~~~~k~~I~i~G~Dkq~Vgq 159 (194)
|+|||+|||+||+++|+++|+|| ||++ +|+.|+| +||||||+.+++|+||+++++++ |+|+|+|+|||+|||
T Consensus 115 I~NMI~GVt~Gf~kkLelvGvGY--ra~~--~G~~L~L--~LG~SHpv~~~iP~GI~v~v~~~--t~Iii~GiDKq~Vgq 186 (223)
T 3bbo_I 115 TDNMVVGVSKGFEKKLILVGVGY--RATV--DGKELVL--NLGFSHPVKMQIPDSLKVKVEEN--TRITVSGYDKSEIGQ 186 (223)
T ss_dssp TTHHHHHTTTCEEECEECCSTTC--CEEE--CSSEEEE--CSSCSSCEEEECCSSEEEECSST--TBCEEEESSSHHHHH
T ss_pred hhcEEEeeccCcEEEEEEeeece--EEEe--cCCEEEE--EeeCCccEEEECCCCeEEEeCCC--CEEEEEeCCHHHHHH
Confidence 99999999999999999999999 7999 8999999 89999999999999999999998 579999999999999
Q ss_pred HHHHHhcccc---cCCCceeeeeceEEEeee
Q 029373 160 SAALINQKCH---VKNKDIRKFLDGIYVSER 187 (194)
Q Consensus 160 ~AA~Ir~~~~---~K~kd~r~f~DGiyv~~k 187 (194)
|||+||+||+ |||||+| ..|-+|-.|
T Consensus 187 ~AA~IR~~R~PEPYKGKGI~--y~~E~I~rK 215 (223)
T 3bbo_I 187 FAATVRKWRPPEPYKGKGVK--YSDEIVRRK 215 (223)
T ss_dssp HHHHTTSSSCCCTTTCCSCE--ETTCCCCCC
T ss_pred HHHHHhccCCCCCcCCCcEe--ECCeEEEEe
Confidence 9999999996 9999988 355555444
No 12
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=100.00 E-value=4.4e-59 Score=382.40 Aligned_cols=169 Identities=21% Similarity=0.374 Sum_probs=153.8
Q ss_pred ccccceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCceEEEEeccccccCCcEEEEEeccCChhhhhhHHhHHHHHh
Q 029373 2 KTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVG 81 (194)
Q Consensus 2 ~~~~~~~~I~IP~~V~v~i~~~~i~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~i~v~~~~~~k~~~a~~Gt~rsli~ 81 (194)
+|++|+.||.||+||+|+++++.|+|+||+|+|+++|++ .+++. .+++.+.+++++++++++|+|||+||||+
T Consensus 1 mSrigk~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~-~v~i~------~~~~~i~v~~~~~~k~~~a~~Gt~rslI~ 73 (185)
T 2zjr_E 1 MSRIGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNT-ELTVR------QDGDQLLVERPSDAQKHRALHGLTRTLVA 73 (185)
T ss_dssp ----CCCCBCCCTTCCEECCTTCCEECCSSCCCCCCCCS-SSCCB------CCSSSBBCCCSSCSSHHHHHHHHHHHHHH
T ss_pred CCcccccceecCCCCEEEEeCCEEEEECCCeEEEEEcCC-CEEEE------EeCCEEEEECCCCCHHHHHHHHHHHHHhh
Confidence 478999999999999999999999999999999999986 77777 66788999999899999999999999999
Q ss_pred hceeeecceeEEEEEEEEEEecceeEeccCCCeEEEecccCceeeEEEeCCCCeEEEEcCCcccEEEEEeccHhHHHHHH
Q 029373 82 NLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSA 161 (194)
Q Consensus 82 Nmi~GVt~Gf~~~L~lvGvGyp~ra~~~~~g~~l~lkn~LG~Sh~i~~~iP~gi~v~~~~~~k~~I~i~G~Dkq~Vgq~A 161 (194)
|||+|||+||+++|+++|+|| ||++ +|+.|.| +||||||+.+++|+||+++++++ |+|+|+|+|||+|||||
T Consensus 74 NmI~GVt~Gf~kkL~lvGvGY--ra~~--~G~~l~l--~LG~Shpv~~~iP~gI~v~v~~~--t~I~l~G~DKq~Vgq~A 145 (185)
T 2zjr_E 74 NAVKGVSDGYTINLELRGVGF--RAKL--TGKALEM--NIGYSHPVIIEPPAGVTFAVPEP--TRIDVSGIDKQLVGQVA 145 (185)
T ss_dssp HHHHHHHHCEEEEEECBSTTC--CCCC--BTTBCBC--CSSCSSCCBCCCCTTEEEECSST--TEEEEEESSHHHHHHHH
T ss_pred cEEeeeccCcEEEEEEeeecc--EEEE--cCCEEEE--EeeCCccEEEECCCCeEEEECCC--CEEEEEecCHHHHHHHH
Confidence 999999999999999999999 7888 8999999 89999999999999999999998 68999999999999999
Q ss_pred HHHhcccc---cCCCceeeeeceEEEeee
Q 029373 162 ALINQKCH---VKNKDIRKFLDGIYVSER 187 (194)
Q Consensus 162 A~Ir~~~~---~K~kd~r~f~DGiyv~~k 187 (194)
|+||+||+ |||||+| ..|-+|-.|
T Consensus 146 A~Ir~~R~PepYKGKGI~--y~~E~i~~K 172 (185)
T 2zjr_E 146 ANVRKVRKPDAYHGKGVR--FVGEQIALK 172 (185)
T ss_dssp HHHHHHTCCCTTTCCBCC--CSSCCCCCC
T ss_pred HHHhccCCCCCcCCCcEe--ECCeEEEEc
Confidence 99999996 9999988 455555444
No 13
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=99.95 E-value=3e-29 Score=187.12 Aligned_cols=91 Identities=47% Similarity=0.852 Sum_probs=79.6
Q ss_pred CccccceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCceEEEEeccccccCCcEEEEEeccCChhhhhhHHhHHHHH
Q 029373 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (194)
Q Consensus 1 m~~~~~~~~I~IP~~V~v~i~~~~i~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~i~v~~~~~~k~~~a~~Gt~rsli 80 (194)
|+++..++||.||+||+|+++++.|+|+||+|+|+++|+|+.+++.++. ..++.|.|++++++|+++|+|||+||||
T Consensus 8 Mk~i~~k~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~h~~v~i~~e~---~~~~~i~v~~~~~~k~~ra~~Gt~RslI 84 (100)
T 2cql_A 8 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLG---KKKKRLRVDKWWGNRKELATVRTICSHV 84 (100)
T ss_dssp CCCCCCCEEECCCSSCEEEEETTEEEEEETTEEEEEECCSSCCEEEEEC---SSSCEEEEECCSSSTHHHHHHHHHHHHH
T ss_pred cccccccCcEEcCCCCEEEEeCCEEEEECCCceEEEEeccCcEEEEEcC---CceeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 5666669999999999999999999999999999999996688888332 1123499998988999999999999999
Q ss_pred hhceeeecceeEEE
Q 029373 81 GNLITGVTKGYRYK 94 (194)
Q Consensus 81 ~Nmi~GVt~Gf~~~ 94 (194)
+|||+|||+||+|.
T Consensus 85 ~NMI~GVt~Gf~y~ 98 (100)
T 2cql_A 85 QNMIKGVTLGSGPS 98 (100)
T ss_dssp HHHHHHHHTSCCSC
T ss_pred HhhhEeecCCEEEc
Confidence 99999999999874
No 14
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=82.12 E-value=5.5 Score=34.27 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=31.4
Q ss_pred CCCcEEEEeCcEEEEEcCC----------cEEEEEecCc-e-----EEEEeccccccC-CcEEEEEec
Q 029373 13 PDGVKIKINAKIIEVEGPR----------GKLSRDFKHL-N-----LDFHLMTDEETG-KRKLKIDAW 63 (194)
Q Consensus 13 P~~V~v~i~~~~i~VkGp~----------G~l~~~l~~~-~-----v~i~~~~~~~~~-~~~i~v~~~ 63 (194)
|+.++|++.++.|+|+|.. |+.++.|.-+ . ++.+ .+ +|.|.|+..
T Consensus 125 ~edI~V~v~~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~------~~~nGVL~I~lP 186 (314)
T 2bol_A 125 AEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQAT------ITTDDVLVIEAP 186 (314)
T ss_dssp TTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEE------ECSSSEEEEEEE
T ss_pred hHHeEEEEECCEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEE------EeCCCEEEEEEe
Confidence 5899999999999999976 5566655421 2 3333 34 688888754
No 15
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=73.23 E-value=2.8 Score=30.22 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=19.2
Q ss_pred EEeCCCCeEEEEcCCcccEEEEEeccH
Q 029373 128 KVDMLDGVTVVRSEKVKDELILDGNDI 154 (194)
Q Consensus 128 ~~~iP~gi~v~~~~~~k~~I~i~G~Dk 154 (194)
.+.||+||+|++.+ +.|+++|.-=
T Consensus 16 pI~IP~gV~V~i~~---~~VtVKGPkG 39 (100)
T 2cql_A 16 TVDIPENVDITLKG---RTVIVKGPRG 39 (100)
T ss_dssp EECCCSSCEEEEET---TEEEEEETTE
T ss_pred cEEcCCCCEEEEeC---CEEEEECCCc
Confidence 35789999999987 4699999753
No 16
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=59.35 E-value=7.9 Score=30.89 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=14.9
Q ss_pred eEEcCCCcEEEEeCcEEEEEcC
Q 029373 9 TMDIPDGVKIKINAKIIEVEGP 30 (194)
Q Consensus 9 ~I~IP~~V~v~i~~~~i~VkGp 30 (194)
.+.+|+||++++.++.|.++|.
T Consensus 121 ~~~ip~gv~v~v~~~~Iil~G~ 142 (184)
T 3j21_F 121 KAKILPGVTVKVRGQEIIVEGI 142 (184)
T ss_dssp EEECCTTEEEEEETTEEEEEES
T ss_pred EEECCCCeEEEecCCEEEEEEC
Confidence 4567888888876555666654
No 17
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=57.16 E-value=9.3 Score=30.35 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=16.6
Q ss_pred eEEcCCCcEEEEeCcEEEEEcC
Q 029373 9 TMDIPDGVKIKINAKIIEVEGP 30 (194)
Q Consensus 9 ~I~IP~~V~v~i~~~~i~VkGp 30 (194)
.+++|+||++++.+..|+++|.
T Consensus 116 ~~~ip~gi~v~v~~~~I~v~G~ 137 (178)
T 1vq8_E 116 RTTIHGDTDVEIDGEELTVSGP 137 (178)
T ss_dssp EEECCTTCEEEEETTEEEEEES
T ss_pred EEeCCCCeEEEEeCCEEEEEEC
Confidence 5678899988887666666664
No 18
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=51.56 E-value=21 Score=24.87 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=30.1
Q ss_pred CCCcEEEEeCcEEEEEcCC-------------cEEEEEecCc-e-----EEEEeccccccCCcEEEEEec
Q 029373 13 PDGVKIKINAKIIEVEGPR-------------GKLSRDFKHL-N-----LDFHLMTDEETGKRKLKIDAW 63 (194)
Q Consensus 13 P~~V~v~i~~~~i~VkGp~-------------G~l~~~l~~~-~-----v~i~~~~~~~~~~~~i~v~~~ 63 (194)
|++++|+++++.|+|+|.+ |...+.|.-+ . ++.+ .+++.|.|+..
T Consensus 29 ~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~------~~~GvL~I~lp 92 (102)
T 4fei_A 29 AGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVAS------LAGGVLTVRFE 92 (102)
T ss_dssp GGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEE------EETTEEEEEEE
T ss_pred hHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEE------EECCEEEEEEE
Confidence 3789999999999999844 6666665421 2 2233 34577877754
No 19
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=50.14 E-value=13 Score=29.32 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=7.6
Q ss_pred hHHHHHHHHHhcc
Q 029373 155 ELVSRSAALINQK 167 (194)
Q Consensus 155 q~Vgq~AA~Ir~~ 167 (194)
...|.++|.|.+.
T Consensus 62 a~~Gt~rsli~Nm 74 (177)
T 1rl6_A 62 ALHGTTRSLLANM 74 (177)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCE
Confidence 4556666666554
No 20
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=49.99 E-value=13 Score=29.80 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=14.3
Q ss_pred eEEcCCCcEEEEeC---cEEEEEcC
Q 029373 9 TMDIPDGVKIKINA---KIIEVEGP 30 (194)
Q Consensus 9 ~I~IP~~V~v~i~~---~~i~VkGp 30 (194)
.+.+|+||+|++.+ ..|.++|.
T Consensus 125 ~~~ip~Gv~v~v~~~~kteIil~G~ 149 (191)
T 3u5e_H 125 NVPVRDGVTIEFSTNVKDEIVLSGN 149 (191)
T ss_dssp EEECCTTEEEEECTTSTTEEEEEES
T ss_pred EEECCCCEEEEECCCCCCEEEEEEC
Confidence 45677777777765 45666664
No 21
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=49.88 E-value=33 Score=23.49 Aligned_cols=18 Identities=17% Similarity=0.663 Sum_probs=15.9
Q ss_pred CCCcEEEEeCcEEEEEcC
Q 029373 13 PDGVKIKINAKIIEVEGP 30 (194)
Q Consensus 13 P~~V~v~i~~~~i~VkGp 30 (194)
|++++|+++++.|+|+|.
T Consensus 27 ~edi~v~~~~~~L~I~g~ 44 (100)
T 3gla_A 27 PSQIEVQMDKGILSIRGE 44 (100)
T ss_dssp GGGCEEEEETTEEEEEEE
T ss_pred HHHEEEEEECCEEEEEEE
Confidence 378999999999999984
No 22
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=48.43 E-value=18 Score=28.97 Aligned_cols=12 Identities=0% Similarity=0.097 Sum_probs=6.9
Q ss_pred HHHHHHHHHhcc
Q 029373 156 LVSRSAALINQK 167 (194)
Q Consensus 156 ~Vgq~AA~Ir~~ 167 (194)
..|.++|.|+..
T Consensus 68 ~~gt~rsli~Nm 79 (190)
T 3iz5_F 68 AIRTAISHVQNL 79 (190)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 456666666554
No 23
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=47.47 E-value=14 Score=29.22 Aligned_cols=13 Identities=23% Similarity=0.256 Sum_probs=8.4
Q ss_pred hHHHHHHHHHhcc
Q 029373 155 ELVSRSAALINQK 167 (194)
Q Consensus 155 q~Vgq~AA~Ir~~ 167 (194)
..+|.++|.|++.
T Consensus 63 a~~gt~rsli~Nm 75 (180)
T 3v2d_H 63 SLHGLTRTLIANA 75 (180)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 3467777777665
No 24
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=46.58 E-value=12 Score=30.00 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=7.6
Q ss_pred EeCCCCeEEEEcC
Q 029373 129 VDMLDGVTVVRSE 141 (194)
Q Consensus 129 ~~iP~gi~v~~~~ 141 (194)
+.||+||+|++.+
T Consensus 10 I~IP~gV~V~i~~ 22 (192)
T 2zkr_e 10 VDIPENVDITLKG 22 (192)
T ss_dssp CCCCTTCEEEEET
T ss_pred EEcCCCCEEEEeC
Confidence 3566666666544
No 25
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=44.62 E-value=16 Score=29.81 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=18.1
Q ss_pred eEEcCCCcEEEEeCc-EEEEEcCC
Q 029373 9 TMDIPDGVKIKINAK-IIEVEGPR 31 (194)
Q Consensus 9 ~I~IP~~V~v~i~~~-~i~VkGp~ 31 (194)
.+.||+||+|++.++ .|+++|..
T Consensus 141 ~~~iP~GI~v~v~~~t~Iiv~GiD 164 (212)
T 1nkw_E 141 IIEPPAGVTFAVPEPTRIDVSGID 164 (212)
T ss_pred EEECCCCeEEEeCCCCEEEEEeCC
Confidence 568899999988754 78888864
No 26
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=44.44 E-value=40 Score=25.46 Aligned_cols=18 Identities=6% Similarity=0.261 Sum_probs=15.9
Q ss_pred CCCcEEEEeCcEEEEEcC
Q 029373 13 PDGVKIKINAKIIEVEGP 30 (194)
Q Consensus 13 P~~V~v~i~~~~i~VkGp 30 (194)
|++|+|+++++.|+|+|.
T Consensus 79 ~edi~V~~~~~~L~I~g~ 96 (161)
T 4eld_A 79 KEDIILNAVGDTLEIRAK 96 (161)
T ss_dssp GGGEEEEEETTEEEEEEE
T ss_pred hHhEEEEEECCEEEEEEE
Confidence 378999999999999984
No 27
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=43.14 E-value=16 Score=29.21 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=12.6
Q ss_pred eEEcCCCcEEEEeC---cEEEEEcC
Q 029373 9 TMDIPDGVKIKINA---KIIEVEGP 30 (194)
Q Consensus 9 ~I~IP~~V~v~i~~---~~i~VkGp 30 (194)
.+.+|+||+|++.+ ..|.++|.
T Consensus 123 ~~~ip~gv~v~v~~~~k~eIil~G~ 147 (188)
T 4a17_E 123 RIQALPGVKISRKDEEKNTLTLQGI 147 (188)
T ss_dssp EEECCTTCEEECCTTSSSEEEEEES
T ss_pred EEECCCCeEEEECCCCCCEEEEEEc
Confidence 34567777776654 34555553
No 28
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=40.27 E-value=17 Score=24.62 Aligned_cols=19 Identities=26% Similarity=0.665 Sum_probs=15.7
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 029373 13 PDGVKIKINAKIIEVEGPR 31 (194)
Q Consensus 13 P~~V~v~i~~~~i~VkGp~ 31 (194)
|++++|++.++.|+|+|.+
T Consensus 20 ~edi~V~v~~~~L~I~g~~ 38 (85)
T 3q9p_A 20 PDELTVKTKDGVVEITGKH 38 (85)
T ss_dssp CSEEEEEEETTEEEEEEEE
T ss_pred hHHEEEEEECCEEEEEEEE
Confidence 5788899999999998853
No 29
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=39.25 E-value=14 Score=29.50 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=17.3
Q ss_pred eEEcCCCcEEEEeCc-EEEEEcCC
Q 029373 9 TMDIPDGVKIKINAK-IIEVEGPR 31 (194)
Q Consensus 9 ~I~IP~~V~v~i~~~-~i~VkGp~ 31 (194)
.+.||+||++++.++ .|+++|..
T Consensus 114 ~~~iP~gI~v~v~~~t~I~l~G~D 137 (185)
T 2zjr_E 114 IIEPPAGVTFAVPEPTRIDVSGID 137 (185)
T ss_dssp BCCCCTTEEEECSSTTEEEEEESS
T ss_pred EEECCCCeEEEECCCCEEEEEecC
Confidence 567899999988654 77777753
No 30
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=36.51 E-value=25 Score=27.62 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=15.5
Q ss_pred eeEEcCCCcEEEEeC-cEEEEEcC
Q 029373 8 ETMDIPDGVKIKINA-KIIEVEGP 30 (194)
Q Consensus 8 ~~I~IP~~V~v~i~~-~~i~VkGp 30 (194)
..+.+|+||+|++.+ ..|.++|.
T Consensus 112 v~~~ip~gv~v~v~~~t~Iil~G~ 135 (176)
T 3r8s_G 112 VDHQLPAGITAECPTQTEIVLKGA 135 (176)
T ss_dssp EEEECCTTCEEEEEETTEEEEEES
T ss_pred EEEECCCCeEEEECCCCEEEEEEC
Confidence 346788888888743 45666664
No 31
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=34.79 E-value=62 Score=22.81 Aligned_cols=32 Identities=28% Similarity=0.283 Sum_probs=23.0
Q ss_pred CeEEEEcCCcccEEEEEeccHhHHHHHHHHHhcc
Q 029373 134 GVTVVRSEKVKDELILDGNDIELVSRSAALINQK 167 (194)
Q Consensus 134 gi~v~~~~~~k~~I~i~G~Dkq~Vgq~AA~Ir~~ 167 (194)
++.+.+|... +.|+|+|. ++.|-...+.|+..
T Consensus 58 ~v~I~fp~~~-~~ItI~G~-~~~V~~a~~~I~~~ 89 (102)
T 2ctf_A 58 KVHIEFTEGE-DKITLEGP-TEDVSVAQEQIEGM 89 (102)
T ss_dssp SSEEEECSSS-CEEEEEEC-HHHHHHHHHHHHHH
T ss_pred CcEEEeCCCC-CEEEEECC-HHHHHHHHHHHHHH
Confidence 3444444332 68999999 88899888888765
No 32
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=34.52 E-value=16 Score=30.10 Aligned_cols=22 Identities=41% Similarity=0.708 Sum_probs=15.7
Q ss_pred eEEcCCCcEEEEeCc-EEEEEcC
Q 029373 9 TMDIPDGVKIKINAK-IIEVEGP 30 (194)
Q Consensus 9 ~I~IP~~V~v~i~~~-~i~VkGp 30 (194)
.++||+||++++.++ .|+++|.
T Consensus 157 ~~~iP~GI~v~v~~~t~Iii~Gi 179 (223)
T 3bbo_I 157 KMQIPDSLKVKVEENTRITVSGY 179 (223)
T ss_dssp EEECCSSEEEECSSTTBCEEEES
T ss_pred EEECCCCeEEEeCCCCEEEEEeC
Confidence 567888888887654 6677664
No 33
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=31.50 E-value=20 Score=25.84 Aligned_cols=17 Identities=18% Similarity=0.217 Sum_probs=14.9
Q ss_pred cHhHHHHHHHHHhcccc
Q 029373 153 DIELVSRSAALINQKCH 169 (194)
Q Consensus 153 Dkq~Vgq~AA~Ir~~~~ 169 (194)
+.+.+.||||.||+||-
T Consensus 30 ~~~ElqqFA~Llr~YR~ 46 (98)
T 4fqn_A 30 SSQEIQQFAALLHEYRN 46 (98)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHc
Confidence 46789999999999985
No 34
>3j20_L 30S ribosomal protein S10P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.88 E-value=41 Score=23.99 Aligned_cols=30 Identities=10% Similarity=0.144 Sum_probs=25.3
Q ss_pred cEEEEEeccHhHHHHHHHHHhcccccCCCc
Q 029373 145 DELILDGNDIELVSRSAALINQKCHVKNKD 174 (194)
Q Consensus 145 ~~I~i~G~Dkq~Vgq~AA~Ir~~~~~K~kd 174 (194)
-+|.|+|.|...+-++|+.|....+.+|-.
T Consensus 4 irI~LkS~d~~~Ld~~~~~i~~~ak~~g~~ 33 (102)
T 3j20_L 4 ARIKIASTNVRSLDEVANQIKQIAERTGVR 33 (102)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHSSSCE
T ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHhCCc
Confidence 479999999999999999999887655543
No 35
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=30.29 E-value=25 Score=23.90 Aligned_cols=19 Identities=37% Similarity=0.754 Sum_probs=16.2
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 029373 13 PDGVKIKINAKIIEVEGPR 31 (194)
Q Consensus 13 P~~V~v~i~~~~i~VkGp~ 31 (194)
|++++|++.++.|+|+|..
T Consensus 19 ~edi~V~v~~~~L~I~g~~ 37 (90)
T 2y1y_A 19 PEELKVKVLGDVIEVHGKH 37 (90)
T ss_dssp GGGEEEEEETTEEEEEEEE
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 3688999999999999964
No 36
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=28.48 E-value=30 Score=24.88 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=20.7
Q ss_pred ccHhHHHHHHHHHhcccccCCCceeeeec
Q 029373 152 NDIELVSRSAALINQKCHVKNKDIRKFLD 180 (194)
Q Consensus 152 ~Dkq~Vgq~AA~Ir~~~~~K~kd~r~f~D 180 (194)
.|||.+=+.|.. ++.-.|||+-+|.+.|
T Consensus 73 ~~KErILkaar~-k~~vtykg~pirlsaD 100 (100)
T 2w7a_A 73 EMKEKMLRAARE-KGRVTLKGKPIRLTVD 100 (100)
T ss_dssp HHHHHHHHHHHH-HCCEEETTEEEEEEEC
T ss_pred ccHHHHHHHHHH-hCceeeCCcceeecCC
Confidence 468888875544 3335699999999988
No 37
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=27.71 E-value=15 Score=25.45 Aligned_cols=19 Identities=32% Similarity=0.274 Sum_probs=16.6
Q ss_pred eccHhHHHHHHHHHhcccc
Q 029373 151 GNDIELVSRSAALINQKCH 169 (194)
Q Consensus 151 G~Dkq~Vgq~AA~Ir~~~~ 169 (194)
+++..+|+|.||+|.+||-
T Consensus 30 ~i~RikVSqaaadL~~yc~ 48 (77)
T 3v5w_G 30 NIDRIKVSKAAADLMAYCE 48 (77)
T ss_dssp SSCCCCHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHH
Confidence 4677889999999999985
No 38
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=27.61 E-value=30 Score=24.17 Aligned_cols=20 Identities=20% Similarity=0.478 Sum_probs=16.7
Q ss_pred CCCcEEEEeCcEEEEEcCCc
Q 029373 13 PDGVKIKINAKIIEVEGPRG 32 (194)
Q Consensus 13 P~~V~v~i~~~~i~VkGp~G 32 (194)
|++++|++.++.|+|+|.+.
T Consensus 24 ~edI~V~v~~~~L~I~g~~~ 43 (101)
T 2wj5_A 24 PEEISVKVVGDHVEVHARHE 43 (101)
T ss_dssp GGGEEEEEETTEEEEEEEEE
T ss_pred HHHeEEEEECCEEEEEEEEe
Confidence 36899999999999998753
No 39
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=27.23 E-value=30 Score=24.40 Aligned_cols=19 Identities=21% Similarity=0.714 Sum_probs=16.5
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 029373 13 PDGVKIKINAKIIEVEGPR 31 (194)
Q Consensus 13 P~~V~v~i~~~~i~VkGp~ 31 (194)
|++++|++.++.|+|+|..
T Consensus 25 ~edi~V~v~~~~L~I~g~~ 43 (106)
T 3l1e_A 25 PEDLTVKVQEDFVEIHGKH 43 (106)
T ss_dssp GGGEEEEEETTEEEEEEEE
T ss_pred hHHEEEEEECCEEEEEEEE
Confidence 4789999999999999953
No 40
>3r8n_J 30S ribosomal protein S10; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_J 3fih_J* 3j18_J* 2wwl_J 3oar_J 3oaq_J 3ofb_J 3ofa_J 3ofp_J 3ofx_J 3ofy_J 3ofo_J 3r8o_J 4a2i_J 4gd1_J 4gd2_J 3i1m_J 1p6g_J 1p87_J* 1vs7_J* ...
Probab=27.12 E-value=30 Score=24.39 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=23.3
Q ss_pred EEEEEeccHhHHHHHHHHHhcccccCC
Q 029373 146 ELILDGNDIELVSRSAALINQKCHVKN 172 (194)
Q Consensus 146 ~I~i~G~Dkq~Vgq~AA~Ir~~~~~K~ 172 (194)
+|.|+|.|...+-++|+.|...++..|
T Consensus 3 rI~L~s~d~~~Ld~~~~~i~~~ak~~g 29 (98)
T 3r8n_J 3 RIRLKAFDHRLIDQATAEIVETAKRTG 29 (98)
T ss_dssp CCEEEBSCHHHHHHHHHHHHHHHHHSS
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHHhC
Confidence 589999999999999999998876433
No 41
>3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination antitermination; 2.60A {Escherichia coli} PDB: 2kvq_E 3d3b_J* 3imq_J
Probab=26.94 E-value=56 Score=22.69 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=23.9
Q ss_pred cEEEEEeccHhHHHHHHHHHhcccccCC
Q 029373 145 DELILDGNDIELVSRSAALINQKCHVKN 172 (194)
Q Consensus 145 ~~I~i~G~Dkq~Vgq~AA~Ir~~~~~K~ 172 (194)
-+|.|++.|...+-++|+.|...-+.+|
T Consensus 11 irI~L~S~d~~~Ld~~~~~Iv~~ak~~g 38 (87)
T 3d3c_J 11 IRIRLKAFDHRLIDQATAEIVETAKRTG 38 (87)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHhC
Confidence 5799999999999999999988755433
No 42
>3r2c_J Protein NUSE, 30S ribosomal protein S10; cross species NUSB-NUSE-RNA interaction; HET: PEG; 1.90A {Aquifex aeolicus} PDB: 3r2d_J
Probab=25.22 E-value=64 Score=22.24 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=23.1
Q ss_pred cEEEEEeccHhHHHHHHHHHhcccccC
Q 029373 145 DELILDGNDIELVSRSAALINQKCHVK 171 (194)
Q Consensus 145 ~~I~i~G~Dkq~Vgq~AA~Ir~~~~~K 171 (194)
-+|.|++.|...+-++|++|-..-+.+
T Consensus 6 iRI~L~S~d~~~Ld~~~~~Iv~~ak~~ 32 (83)
T 3r2c_J 6 IRIKLRAYDHRLLDQSVKQIIETVKRT 32 (83)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHh
Confidence 479999999999999999998865433
No 43
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=23.23 E-value=30 Score=23.09 Aligned_cols=26 Identities=15% Similarity=0.488 Sum_probs=21.0
Q ss_pred CCcEEEEeCcEEEEEcCCcEEEEEec
Q 029373 14 DGVKIKINAKIIEVEGPRGKLSRDFK 39 (194)
Q Consensus 14 ~~V~v~i~~~~i~VkGp~G~l~~~l~ 39 (194)
.||.+.++++.+.++.|+|.++-++.
T Consensus 17 ~gi~l~~eg~kLr~~ap~g~l~~~l~ 42 (78)
T 2jug_A 17 LGVRLWVEGERLRFQAPPGVMTPELQ 42 (78)
T ss_dssp HTCEEEEETTEEEEECCTTTTCHHHH
T ss_pred cCCEEEEECCEeeeecCccccCHHHH
Confidence 37888999999999999998874443
No 44
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=20.52 E-value=1.4e+02 Score=19.76 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=17.1
Q ss_pred EEEEEeccHhHHHHHHHHHhcc
Q 029373 146 ELILDGNDIELVSRSAALINQK 167 (194)
Q Consensus 146 ~I~i~G~Dkq~Vgq~AA~Ir~~ 167 (194)
.+.|.| |.+.+-.....|+.+
T Consensus 62 ~v~I~G-~~~~v~~A~~~I~~i 82 (85)
T 2opv_A 62 PLRIIG-DPYKVQQACEMVMDI 82 (85)
T ss_dssp EEEEEE-CHHHHHHHHHHHHHH
T ss_pred EEEEEe-CHHHHHHHHHHHHHH
Confidence 399999 999998877777664
No 45
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=20.31 E-value=58 Score=22.73 Aligned_cols=22 Identities=23% Similarity=0.578 Sum_probs=15.5
Q ss_pred CCcEEEEeCcEEEEEcCC--cEEE
Q 029373 14 DGVKIKINAKIIEVEGPR--GKLS 35 (194)
Q Consensus 14 ~~V~v~i~~~~i~VkGp~--G~l~ 35 (194)
..+.|++++.+++|+|.+ |+|.
T Consensus 77 ndinvtfdgdtvtvegqleggsle 100 (106)
T 1qys_A 77 NDINVTFDGDTVTVEGQLEGGSLE 100 (106)
T ss_dssp CEEEEEEETTEEEEEEEC------
T ss_pred cceeEEEcCCeEEEEeEEcCCccc
Confidence 357889999999999987 5554
No 46
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A
Probab=20.15 E-value=47 Score=25.80 Aligned_cols=19 Identities=37% Similarity=0.754 Sum_probs=15.7
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 029373 13 PDGVKIKINAKIIEVEGPR 31 (194)
Q Consensus 13 P~~V~v~i~~~~i~VkGp~ 31 (194)
|++++|++.++.|+|+|..
T Consensus 86 ~edI~V~v~~~~L~I~g~~ 104 (175)
T 2klr_A 86 PEELKVKVLGDVIEVHGKH 104 (175)
T ss_dssp GGGEEEEEETTEEEEEEEE
T ss_pred hHHEEEEEECCEEEEEEEE
Confidence 4788899999999999864
Done!