Query 029374
Match_columns 194
No_of_seqs 128 out of 1061
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 11:54:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029374.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029374hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09481 sspA stringent starva 100.0 1.5E-37 3.3E-42 228.5 19.0 175 1-188 10-194 (211)
2 PLN02473 glutathione S-transfe 100.0 1.3E-36 2.8E-41 224.1 20.1 184 2-188 3-203 (214)
3 PRK15113 glutathione S-transfe 100.0 1.4E-36 3.1E-41 223.8 15.5 185 1-188 5-200 (214)
4 PRK13972 GSH-dependent disulfi 100.0 1.9E-36 4.2E-41 223.3 14.2 181 1-186 1-196 (215)
5 TIGR01262 maiA maleylacetoacet 100.0 4.5E-35 9.8E-40 215.3 19.0 183 3-185 1-194 (210)
6 KOG0868 Glutathione S-transfer 100.0 1.5E-35 3.3E-40 202.1 14.6 182 2-184 6-196 (217)
7 COG0625 Gst Glutathione S-tran 100.0 1.5E-34 3.3E-39 212.6 18.5 183 2-189 1-197 (211)
8 PLN02395 glutathione S-transfe 100.0 3.4E-34 7.4E-39 211.4 19.6 184 1-188 2-202 (215)
9 PRK11752 putative S-transferas 100.0 1.7E-33 3.7E-38 213.0 18.7 181 1-188 44-250 (264)
10 KOG0406 Glutathione S-transfer 100.0 2E-33 4.4E-38 202.9 18.0 176 2-187 10-203 (231)
11 PRK10542 glutathionine S-trans 100.0 1.9E-33 4.2E-38 205.3 15.8 177 2-186 1-188 (201)
12 PRK10357 putative glutathione 100.0 5.2E-33 1.1E-37 203.2 17.4 179 2-186 1-191 (202)
13 KOG0867 Glutathione S-transfer 100.0 5.1E-32 1.1E-36 200.3 15.0 185 2-189 3-202 (226)
14 PLN02378 glutathione S-transfe 100.0 6.6E-30 1.4E-34 188.1 16.8 161 7-188 17-191 (213)
15 PRK10387 glutaredoxin 2; Provi 100.0 2E-30 4.4E-35 190.5 13.1 178 2-190 1-207 (210)
16 PTZ00057 glutathione s-transfe 100.0 7.9E-29 1.7E-33 181.4 18.0 170 2-188 5-191 (205)
17 TIGR00862 O-ClC intracellular 100.0 8.5E-29 1.8E-33 183.0 17.9 162 8-186 17-211 (236)
18 PLN02817 glutathione dehydroge 100.0 1.1E-28 2.3E-33 186.1 16.8 159 7-186 70-242 (265)
19 TIGR02182 GRXB Glutaredoxin, G 100.0 2.1E-28 4.6E-33 179.5 14.6 176 3-189 1-205 (209)
20 KOG1695 Glutathione S-transfer 99.9 3.3E-25 7.1E-30 159.4 15.1 177 2-186 4-191 (206)
21 KOG4420 Uncharacterized conser 99.9 4.9E-23 1.1E-27 148.8 13.0 185 2-186 27-278 (325)
22 PLN02907 glutamate-tRNA ligase 99.9 2.1E-22 4.6E-27 169.0 15.6 145 2-189 3-159 (722)
23 cd03052 GST_N_GDAP1 GST_N fami 99.9 2.2E-21 4.8E-26 118.7 8.6 73 2-74 1-73 (73)
24 KOG1422 Intracellular Cl- chan 99.9 1.2E-20 2.7E-25 132.7 13.4 161 8-185 19-195 (221)
25 cd03048 GST_N_Ure2p_like GST_N 99.9 6.2E-21 1.3E-25 119.4 9.4 77 1-78 1-80 (81)
26 cd03041 GST_N_2GST_N GST_N fam 99.8 4.2E-21 9E-26 118.9 7.8 75 1-77 1-77 (77)
27 PF13417 GST_N_3: Glutathione 99.8 1.1E-20 2.3E-25 116.4 8.2 74 4-80 1-74 (75)
28 cd03045 GST_N_Delta_Epsilon GS 99.8 2E-20 4.2E-25 115.1 8.5 74 2-75 1-74 (74)
29 cd03050 GST_N_Theta GST_N fami 99.8 5.2E-20 1.1E-24 113.7 9.2 76 2-77 1-76 (76)
30 cd03053 GST_N_Phi GST_N family 99.8 6.1E-20 1.3E-24 113.4 8.9 75 2-76 2-76 (76)
31 cd03059 GST_N_SspA GST_N famil 99.8 8.9E-20 1.9E-24 111.8 8.8 73 2-77 1-73 (73)
32 KOG3029 Glutathione S-transfer 99.8 1.5E-19 3.2E-24 132.4 11.2 180 2-187 91-356 (370)
33 cd03058 GST_N_Tau GST_N family 99.8 1.3E-19 2.9E-24 111.3 8.7 73 2-77 1-74 (74)
34 cd03056 GST_N_4 GST_N family, 99.8 1.4E-19 3E-24 110.9 8.5 73 2-74 1-73 (73)
35 cd03061 GST_N_CLIC GST_N famil 99.8 1.5E-19 3.2E-24 113.8 8.6 70 8-80 20-89 (91)
36 cd03047 GST_N_2 GST_N family, 99.8 2.3E-19 4.9E-24 110.0 8.4 73 2-74 1-73 (73)
37 cd03051 GST_N_GTT2_like GST_N 99.8 2E-19 4.4E-24 110.4 7.9 73 2-74 1-74 (74)
38 cd03042 GST_N_Zeta GST_N famil 99.8 2.9E-19 6.3E-24 109.5 8.5 73 2-74 1-73 (73)
39 cd03057 GST_N_Beta GST_N famil 99.8 6.3E-19 1.4E-23 109.1 8.9 76 2-78 1-77 (77)
40 cd03046 GST_N_GTT1_like GST_N 99.8 7.1E-19 1.5E-23 108.6 9.0 76 2-78 1-76 (76)
41 cd03044 GST_N_EF1Bgamma GST_N 99.8 9E-19 1.9E-23 107.9 8.3 72 3-75 2-74 (75)
42 cd03060 GST_N_Omega_like GST_N 99.8 1.6E-18 3.4E-23 105.6 8.1 69 2-73 1-70 (71)
43 PF02798 GST_N: Glutathione S- 99.8 1.9E-18 4.1E-23 106.6 8.4 74 2-75 1-76 (76)
44 cd03076 GST_N_Pi GST_N family, 99.8 1E-18 2.2E-23 107.0 6.7 72 2-76 2-73 (73)
45 cd03039 GST_N_Sigma_like GST_N 99.8 9.8E-19 2.1E-23 106.9 6.3 72 2-75 1-72 (72)
46 cd03037 GST_N_GRX2 GST_N famil 99.8 1.7E-18 3.7E-23 105.5 7.3 70 2-75 1-71 (71)
47 cd03080 GST_N_Metaxin_like GST 99.8 2.2E-18 4.8E-23 106.1 7.8 68 1-78 1-75 (75)
48 cd03055 GST_N_Omega GST_N fami 99.8 2.8E-18 6.1E-23 109.0 8.1 71 1-74 18-89 (89)
49 cd03049 GST_N_3 GST_N family, 99.8 5.1E-18 1.1E-22 103.9 7.6 70 2-74 1-73 (73)
50 COG2999 GrxB Glutaredoxin 2 [P 99.7 1.9E-17 4.2E-22 113.6 10.7 175 2-186 1-204 (215)
51 PF13409 GST_N_2: Glutathione 99.7 1.1E-17 2.4E-22 101.4 7.8 68 9-76 1-70 (70)
52 cd03038 GST_N_etherase_LigE GS 99.7 8.5E-18 1.8E-22 105.8 7.5 70 8-78 14-84 (84)
53 cd03075 GST_N_Mu GST_N family, 99.7 1.3E-17 2.9E-22 104.2 7.9 75 3-77 2-82 (82)
54 KOG4244 Failed axon connection 99.7 2.1E-16 4.6E-21 115.2 13.6 164 8-186 59-273 (281)
55 cd03040 GST_N_mPGES2 GST_N fam 99.7 3.4E-17 7.4E-22 101.3 7.9 71 2-77 2-76 (77)
56 cd03077 GST_N_Alpha GST_N fami 99.7 1.3E-16 2.9E-21 99.0 8.1 71 2-78 2-77 (79)
57 cd03043 GST_N_1 GST_N family, 99.7 1.8E-16 3.9E-21 97.0 8.1 68 6-74 6-73 (73)
58 cd00570 GST_N_family Glutathio 99.7 5.6E-16 1.2E-20 93.6 8.0 71 2-74 1-71 (71)
59 COG0435 ECM4 Predicted glutath 99.7 6.3E-16 1.4E-20 113.3 8.9 176 2-188 52-278 (324)
60 cd03054 GST_N_Metaxin GST_N fa 99.6 1.7E-15 3.6E-20 92.4 7.1 65 2-76 1-72 (72)
61 KOG2903 Predicted glutathione 99.6 1.6E-14 3.5E-19 105.0 7.7 179 2-188 38-280 (319)
62 cd03189 GST_C_GTT1_like GST_C 99.5 4.8E-14 1E-18 94.4 9.3 100 84-185 2-117 (119)
63 KOG3027 Mitochondrial outer me 99.5 3.1E-12 6.7E-17 90.2 13.3 165 8-185 32-247 (257)
64 cd03180 GST_C_2 GST_C family, 99.5 5.9E-13 1.3E-17 87.7 9.1 98 89-189 2-109 (110)
65 cd03182 GST_C_GTT2_like GST_C 99.5 3.9E-13 8.4E-18 89.6 8.4 101 86-189 1-116 (117)
66 cd03191 GST_C_Zeta GST_C famil 99.5 5.4E-13 1.2E-17 89.5 8.7 99 88-186 2-110 (121)
67 cd03196 GST_C_5 GST_C family, 99.4 4E-13 8.7E-18 89.4 7.0 98 85-189 2-110 (115)
68 cd03079 GST_N_Metaxin2 GST_N f 99.4 7.1E-13 1.5E-17 80.3 6.9 60 8-76 15-74 (74)
69 cd03186 GST_C_SspA GST_N famil 99.4 9.8E-13 2.1E-17 86.4 7.7 92 88-189 2-102 (107)
70 cd03178 GST_C_Ure2p_like GST_C 99.4 5E-13 1.1E-17 88.5 6.3 97 89-188 1-106 (113)
71 cd03188 GST_C_Beta GST_C famil 99.4 4.8E-13 1E-17 88.7 5.3 96 89-186 2-107 (114)
72 cd03200 GST_C_JTV1 GST_C famil 99.4 1.4E-12 2.9E-17 83.9 6.6 90 70-185 1-95 (96)
73 cd03185 GST_C_Tau GST_C family 99.4 2.2E-12 4.8E-17 87.1 7.9 90 88-186 2-106 (126)
74 cd03187 GST_C_Phi GST_C family 99.4 3.7E-12 8E-17 85.0 8.9 97 89-188 2-112 (118)
75 cd03181 GST_C_EFB1gamma GST_C 99.4 1.7E-12 3.6E-17 87.3 7.2 95 90-186 2-107 (123)
76 cd03190 GST_C_ECM4_like GST_C 99.4 3.4E-12 7.4E-17 88.1 8.5 91 88-186 3-109 (142)
77 cd03177 GST_C_Delta_Epsilon GS 99.4 3.8E-12 8.3E-17 85.0 8.2 93 89-186 2-103 (118)
78 cd03179 GST_C_1 GST_C family, 99.3 1.5E-12 3.2E-17 85.0 4.1 94 89-184 2-105 (105)
79 cd03206 GST_C_7 GST_C family, 99.3 7.9E-12 1.7E-16 81.0 6.1 90 94-189 2-99 (100)
80 cd03183 GST_C_Theta GST_C fami 99.3 1.3E-11 2.8E-16 83.4 7.3 96 90-186 2-111 (126)
81 cd03184 GST_C_Omega GST_C fami 99.3 1.7E-11 3.6E-16 82.7 7.6 89 89-186 2-104 (124)
82 PF00043 GST_C: Glutathione S- 99.3 1E-11 2.3E-16 79.6 5.8 61 123-185 23-93 (95)
83 PF13410 GST_C_2: Glutathione 99.2 2.1E-11 4.6E-16 73.5 6.0 57 124-182 2-69 (69)
84 TIGR02190 GlrX-dom Glutaredoxi 99.2 4.5E-11 9.8E-16 74.0 6.9 70 2-74 10-79 (79)
85 KOG3028 Translocase of outer m 99.2 1.8E-09 3.8E-14 81.2 16.3 164 10-185 17-233 (313)
86 PF14497 GST_C_3: Glutathione 99.2 9.1E-12 2E-16 80.6 3.3 62 124-185 31-99 (99)
87 PRK10638 glutaredoxin 3; Provi 99.2 7.1E-11 1.5E-15 73.9 6.7 71 2-74 4-74 (83)
88 cd03210 GST_C_Pi GST_C family, 99.2 1.5E-10 3.3E-15 78.2 7.8 62 125-186 32-103 (126)
89 cd03078 GST_N_Metaxin1_like GS 99.1 2E-10 4.3E-15 69.9 6.8 58 9-76 15-72 (73)
90 cd03207 GST_C_8 GST_C family, 99.1 2.5E-11 5.5E-16 79.0 2.9 61 124-186 26-93 (103)
91 cd03208 GST_C_Alpha GST_C fami 99.1 2.3E-10 4.9E-15 78.4 7.7 60 127-186 38-106 (137)
92 cd03029 GRX_hybridPRX5 Glutare 99.1 3.2E-10 7E-15 68.9 7.5 71 1-74 2-72 (72)
93 cd00299 GST_C_family Glutathio 99.1 7.3E-11 1.6E-15 76.0 4.6 88 94-183 2-100 (100)
94 cd03198 GST_C_CLIC GST_C famil 99.1 2.3E-10 5E-15 77.5 7.0 64 123-186 24-115 (134)
95 cd03209 GST_C_Mu GST_C family, 99.1 3.2E-10 7E-15 76.1 7.4 89 89-185 2-99 (121)
96 cd03204 GST_C_GDAP1 GST_C fami 99.1 2E-10 4.3E-15 75.4 6.0 68 121-189 22-110 (111)
97 cd03195 GST_C_4 GST_C family, 99.1 1.5E-10 3.2E-15 76.9 4.5 98 88-189 2-106 (114)
98 cd03203 GST_C_Lambda GST_C fam 99.0 1.3E-09 2.8E-14 73.0 8.0 87 86-186 1-102 (120)
99 TIGR02196 GlrX_YruB Glutaredox 99.0 7.9E-10 1.7E-14 67.2 6.4 71 1-73 1-73 (74)
100 cd03192 GST_C_Sigma_like GST_C 99.0 1.1E-09 2.4E-14 71.3 6.8 93 89-183 2-104 (104)
101 cd03193 GST_C_Metaxin GST_C fa 99.0 1.2E-09 2.7E-14 69.0 6.5 55 128-184 19-88 (88)
102 cd03202 GST_C_etherase_LigE GS 99.0 7.7E-10 1.7E-14 74.5 5.7 58 126-185 56-123 (124)
103 cd03201 GST_C_DHAR GST_C famil 99.0 3E-09 6.4E-14 71.3 7.9 59 127-186 29-101 (121)
104 cd03027 GRX_DEP Glutaredoxin ( 99.0 2.4E-09 5.3E-14 65.2 6.3 68 2-71 3-70 (73)
105 cd03194 GST_C_3 GST_C family, 99.0 8.6E-10 1.9E-14 73.2 4.2 62 125-188 38-106 (114)
106 cd03205 GST_C_6 GST_C family, 98.9 3.9E-09 8.5E-14 68.1 6.9 84 95-183 3-98 (98)
107 cd03211 GST_C_Metaxin2 GST_C f 98.9 9E-09 1.9E-13 69.5 7.2 59 124-184 53-126 (126)
108 cd03197 GST_C_mPGES2 GST_C fam 98.9 5.7E-09 1.2E-13 71.5 6.2 59 128-187 79-147 (149)
109 PRK10329 glutaredoxin-like pro 98.9 5.8E-09 1.3E-13 64.7 5.8 60 2-64 3-62 (81)
110 cd02066 GRX_family Glutaredoxi 98.8 1.2E-08 2.5E-13 61.5 6.2 69 2-72 2-70 (72)
111 cd02976 NrdH NrdH-redoxin (Nrd 98.8 9.4E-09 2E-13 62.2 5.4 62 2-65 2-63 (73)
112 cd03418 GRX_GRXb_1_3_like Glut 98.8 2.3E-08 5E-13 61.1 6.2 70 2-73 2-72 (75)
113 COG0695 GrxC Glutaredoxin and 98.8 2.4E-08 5.2E-13 61.8 6.1 69 2-71 3-72 (80)
114 PRK11200 grxA glutaredoxin 1; 98.8 5E-08 1.1E-12 61.2 7.1 76 1-78 2-84 (85)
115 TIGR02181 GRX_bact Glutaredoxi 98.7 4.1E-08 8.8E-13 60.7 6.1 72 2-75 1-72 (79)
116 cd03212 GST_C_Metaxin1_3 GST_C 98.7 3.3E-08 7.1E-13 67.7 5.4 60 124-185 60-134 (137)
117 TIGR02200 GlrX_actino Glutared 98.7 7.4E-08 1.6E-12 59.0 6.1 70 2-73 2-75 (77)
118 PF14834 GST_C_4: Glutathione 98.7 1.6E-07 3.4E-12 60.8 7.5 83 86-170 1-83 (117)
119 TIGR02194 GlrX_NrdH Glutaredox 98.6 7.2E-08 1.6E-12 58.5 5.1 57 2-61 1-57 (72)
120 PF00462 Glutaredoxin: Glutare 98.6 8.1E-08 1.8E-12 56.1 3.7 60 2-63 1-60 (60)
121 TIGR02183 GRXA Glutaredoxin, G 98.5 4.8E-07 1E-11 56.8 7.1 75 2-78 2-83 (86)
122 TIGR02189 GlrX-like_plant Glut 98.5 6.3E-07 1.4E-11 57.8 6.3 71 2-72 10-81 (99)
123 cd03419 GRX_GRXh_1_2_like Glut 98.5 7.8E-07 1.7E-11 55.2 6.5 74 2-75 2-76 (82)
124 PHA03050 glutaredoxin; Provisi 98.4 1.1E-06 2.3E-11 57.6 6.5 70 2-71 15-88 (108)
125 TIGR02180 GRX_euk Glutaredoxin 98.2 5.8E-06 1.3E-10 51.4 6.8 74 2-75 1-77 (84)
126 TIGR00365 monothiol glutaredox 98.2 7.5E-06 1.6E-10 52.6 6.5 64 8-73 25-88 (97)
127 PF10568 Tom37: Outer mitochon 98.2 1E-05 2.3E-10 48.8 6.3 55 9-73 13-71 (72)
128 cd03028 GRX_PICOT_like Glutare 98.2 9.7E-06 2.1E-10 51.3 6.5 64 8-73 21-84 (90)
129 cd03031 GRX_GRX_like Glutaredo 97.8 0.00011 2.4E-09 50.6 6.4 69 2-72 2-80 (147)
130 PRK12759 bifunctional gluaredo 97.7 0.00013 2.8E-09 59.0 7.3 67 2-71 4-79 (410)
131 PRK01655 spxA transcriptional 97.7 5E-05 1.1E-09 51.5 3.8 33 1-33 1-33 (131)
132 cd03032 ArsC_Spx Arsenate Redu 97.6 7.1E-05 1.5E-09 49.6 3.8 33 1-33 1-33 (115)
133 PRK10824 glutaredoxin-4; Provi 97.6 0.00037 8.1E-09 46.0 6.3 63 8-72 28-90 (115)
134 PRK13344 spxA transcriptional 97.5 0.00016 3.4E-09 49.1 3.9 34 1-34 1-34 (132)
135 PRK12559 transcriptional regul 97.5 0.00016 3.4E-09 49.1 3.8 34 1-34 1-34 (131)
136 cd02973 TRX_GRX_like Thioredox 97.4 0.00074 1.6E-08 39.9 6.0 57 2-64 3-64 (67)
137 KOG1752 Glutaredoxin and relat 97.4 0.0014 3E-08 42.4 7.0 71 2-72 16-87 (104)
138 cd03036 ArsC_like Arsenate Red 97.2 0.00033 7.1E-09 46.1 3.2 33 2-34 1-33 (111)
139 PF04399 Glutaredoxin2_C: Glut 97.2 0.0016 3.5E-08 44.0 6.3 58 126-186 57-121 (132)
140 cd02977 ArsC_family Arsenate R 97.1 0.00055 1.2E-08 44.5 3.5 32 2-33 1-32 (105)
141 PRK10853 putative reductase; P 97.1 0.00068 1.5E-08 45.1 3.8 33 1-33 1-33 (118)
142 PTZ00062 glutaredoxin; Provisi 97.1 0.0024 5.1E-08 46.6 6.4 63 8-72 126-188 (204)
143 cd03199 GST_C_GRX2 GST_C famil 97.0 0.00072 1.6E-08 45.3 2.9 58 127-187 59-123 (128)
144 COG1393 ArsC Arsenate reductas 97.0 0.0011 2.3E-08 44.0 3.7 33 1-33 2-34 (117)
145 KOG1147 Glutamyl-tRNA syntheta 97.0 0.00082 1.8E-08 54.9 3.7 96 58-181 43-150 (712)
146 TIGR01617 arsC_related transcr 96.9 0.0014 3E-08 43.5 3.5 32 2-33 1-32 (117)
147 cd03030 GRX_SH3BGR Glutaredoxi 96.7 0.0091 2E-07 37.8 6.1 68 2-71 2-79 (92)
148 cd03035 ArsC_Yffb Arsenate Red 96.6 0.0025 5.5E-08 41.4 3.5 33 2-34 1-33 (105)
149 TIGR00412 redox_disulf_2 small 96.6 0.017 3.6E-07 35.1 6.8 55 1-63 2-60 (76)
150 cd03033 ArsC_15kD Arsenate Red 96.6 0.003 6.4E-08 41.7 3.5 32 2-33 2-33 (113)
151 PRK10026 arsenate reductase; P 96.6 0.003 6.5E-08 43.3 3.4 34 1-34 3-36 (141)
152 PHA02125 thioredoxin-like prot 96.5 0.011 2.3E-07 35.9 5.6 52 1-58 1-52 (75)
153 COG4545 Glutaredoxin-related p 96.5 0.0099 2.2E-07 35.5 5.1 64 1-64 3-77 (85)
154 TIGR00411 redox_disulf_1 small 96.4 0.037 8.1E-07 33.7 7.5 57 1-61 2-62 (82)
155 TIGR01616 nitro_assoc nitrogen 95.9 0.011 2.4E-07 39.7 3.7 32 2-33 3-34 (126)
156 cd03034 ArsC_ArsC Arsenate Red 95.5 0.019 4.2E-07 37.7 3.4 32 2-33 1-32 (112)
157 cd03026 AhpF_NTD_C TRX-GRX-lik 95.4 0.081 1.8E-06 33.2 6.0 57 2-64 16-77 (89)
158 TIGR00014 arsC arsenate reduct 95.4 0.022 4.8E-07 37.6 3.4 32 2-33 1-32 (114)
159 PF05768 DUF836: Glutaredoxin- 94.9 0.19 4E-06 30.9 6.4 54 2-60 2-57 (81)
160 PF11287 DUF3088: Protein of u 94.8 0.16 3.4E-06 33.1 5.9 67 9-78 23-108 (112)
161 PF13192 Thioredoxin_3: Thiore 94.5 0.36 7.9E-06 29.1 7.0 56 2-65 3-62 (76)
162 PF11801 Tom37_C: Tom37 C-term 94.3 0.12 2.6E-06 36.6 5.1 43 132-176 112-158 (168)
163 cd01659 TRX_superfamily Thiore 94.0 0.13 2.9E-06 28.6 4.2 53 2-57 1-58 (69)
164 PF04908 SH3BGR: SH3-binding, 94.0 0.18 3.9E-06 32.4 4.9 68 2-71 3-85 (99)
165 COG0278 Glutaredoxin-related p 93.7 0.29 6.4E-06 31.2 5.3 65 7-73 27-92 (105)
166 PF09635 MetRS-N: MetRS-N bind 90.4 1.1 2.4E-05 29.8 5.3 27 53-79 36-64 (122)
167 PF03960 ArsC: ArsC family; I 89.7 0.36 7.7E-06 31.5 2.7 29 5-33 1-29 (110)
168 cd02947 TRX_family TRX family; 87.6 4.2 9.2E-05 24.4 6.5 53 3-61 15-74 (93)
169 cd02949 TRX_NTR TRX domain, no 87.4 2.8 6E-05 26.3 5.6 58 2-63 17-80 (97)
170 TIGR01295 PedC_BrcD bacterioci 85.3 3.6 7.8E-05 27.4 5.5 61 3-63 28-103 (122)
171 TIGR03143 AhpF_homolog putativ 84.2 3.5 7.7E-05 35.0 6.3 57 2-64 480-541 (555)
172 PRK15317 alkyl hydroperoxide r 83.4 1.5 3.3E-05 36.8 3.7 74 2-76 120-197 (517)
173 KOG1668 Elongation factor 1 be 82.5 0.74 1.6E-05 34.0 1.4 50 134-185 10-63 (231)
174 cd02953 DsbDgamma DsbD gamma f 82.1 2.8 6.1E-05 26.6 3.9 55 2-57 15-77 (104)
175 cd02975 PfPDO_like_N Pyrococcu 81.2 6.8 0.00015 25.5 5.5 48 6-57 30-80 (113)
176 TIGR03140 AhpF alkyl hydropero 80.8 1.8 3.8E-05 36.4 3.2 74 2-76 121-198 (515)
177 KOG0911 Glutaredoxin-related p 75.9 7.2 0.00016 28.9 4.7 64 7-72 151-214 (227)
178 PTZ00051 thioredoxin; Provisio 74.9 16 0.00034 22.6 5.7 56 3-62 23-83 (98)
179 PF00085 Thioredoxin: Thioredo 73.4 19 0.00041 22.3 8.4 68 3-75 22-102 (103)
180 TIGR02187 GlrX_arch Glutaredox 72.4 22 0.00048 26.1 6.7 53 2-58 137-192 (215)
181 cd02989 Phd_like_TxnDC9 Phosdu 72.2 24 0.00052 22.9 7.1 56 4-65 28-90 (113)
182 COG3019 Predicted metal-bindin 69.4 19 0.00042 24.6 5.2 71 2-78 28-105 (149)
183 PF04134 DUF393: Protein of un 69.3 18 0.0004 23.3 5.2 72 4-76 1-77 (114)
184 KOG3425 Uncharacterized conser 68.9 22 0.00047 23.7 5.2 70 7-76 42-122 (128)
185 PHA02278 thioredoxin-like prot 68.3 29 0.00062 22.3 6.5 59 5-63 21-85 (103)
186 cd02963 TRX_DnaJ TRX domain, D 66.8 31 0.00068 22.2 6.2 56 3-62 29-91 (111)
187 PHA03075 glutaredoxin-like pro 64.4 12 0.00027 24.6 3.4 34 2-35 5-38 (123)
188 cd02984 TRX_PICOT TRX domain, 64.4 31 0.00066 21.2 6.4 57 3-63 19-81 (97)
189 TIGR02187 GlrX_arch Glutaredox 63.1 37 0.00081 24.9 6.3 56 2-61 23-88 (215)
190 COG5515 Uncharacterized conser 58.7 6.5 0.00014 22.6 1.2 21 2-22 3-27 (70)
191 cd02948 TRX_NDPK TRX domain, T 56.5 27 0.00058 22.1 4.1 55 4-63 23-84 (102)
192 cd02952 TRP14_like Human TRX-r 56.2 57 0.0012 21.6 6.1 59 8-66 38-106 (119)
193 PRK09381 trxA thioredoxin; Pro 54.0 54 0.0012 20.7 6.8 56 4-63 27-88 (109)
194 KOG2824 Glutaredoxin-related p 53.7 23 0.0005 27.2 3.8 58 12-71 149-210 (281)
195 KOG2501 Thioredoxin, nucleored 53.3 20 0.00044 25.1 3.2 36 3-38 37-80 (157)
196 TIGR02681 phage_pRha phage reg 52.8 19 0.00042 23.4 2.9 26 53-78 2-28 (108)
197 PRK09266 hypothetical protein; 52.3 14 0.00031 28.0 2.7 60 19-78 200-259 (266)
198 cd02959 ERp19 Endoplasmic reti 51.7 62 0.0013 21.1 5.3 19 4-22 25-43 (117)
199 COG3011 Predicted thiol-disulf 51.2 77 0.0017 21.7 6.9 74 2-77 10-87 (137)
200 PF01323 DSBA: DSBA-like thior 50.7 25 0.00054 24.9 3.6 34 2-35 2-40 (193)
201 cd02997 PDI_a_PDIR PDIa family 50.3 32 0.00068 21.3 3.7 53 3-57 22-80 (104)
202 cd03003 PDI_a_ERdj5_N PDIa fam 49.2 63 0.0014 20.1 5.6 53 4-61 24-83 (101)
203 cd02951 SoxW SoxW family; SoxW 48.9 48 0.001 21.6 4.6 17 2-18 18-34 (125)
204 cd02954 DIM1 Dim1 family; Dim1 47.1 81 0.0018 20.8 5.7 55 5-63 21-81 (114)
205 cd02962 TMX2 TMX2 family; comp 46.1 99 0.0021 21.4 6.6 57 4-64 53-122 (152)
206 cd03020 DsbA_DsbC_DsbG DsbA fa 44.8 30 0.00064 24.9 3.2 31 2-32 81-113 (197)
207 PF10022 DUF2264: Uncharacteri 43.0 35 0.00075 27.5 3.5 111 53-170 98-212 (361)
208 cd03004 PDI_a_ERdj5_C PDIa fam 42.7 74 0.0016 19.8 4.6 50 4-57 25-78 (104)
209 cd02955 SSP411 TRX domain, SSP 42.5 1E+02 0.0022 20.6 5.2 62 5-66 22-97 (124)
210 cd02957 Phd_like Phosducin (Ph 40.9 58 0.0013 20.9 3.9 56 4-66 30-92 (113)
211 PF09413 DUF2007: Domain of un 40.5 23 0.00049 20.5 1.7 32 3-34 2-33 (67)
212 cd02956 ybbN ybbN protein fami 39.7 88 0.0019 19.0 6.7 55 4-62 18-78 (96)
213 cd03021 DsbA_GSTK DsbA family, 38.8 41 0.00088 24.5 3.2 34 2-35 3-40 (209)
214 cd03024 DsbA_FrnE DsbA family, 38.7 37 0.00081 24.2 3.0 34 2-35 1-42 (201)
215 PRK11657 dsbG disulfide isomer 38.3 40 0.00086 25.6 3.1 20 2-21 121-140 (251)
216 cd02972 DsbA_family DsbA famil 38.3 37 0.0008 20.4 2.6 22 2-23 1-22 (98)
217 cd03065 PDI_b_Calsequestrin_N 37.5 1.2E+02 0.0026 20.0 7.0 32 27-62 66-99 (120)
218 cd02950 TxlA TRX-like protein 37.2 1.3E+02 0.0029 20.3 6.4 58 4-63 26-90 (142)
219 PF13728 TraF: F plasmid trans 36.9 1.6E+02 0.0035 21.7 6.1 55 3-57 125-188 (215)
220 cd02999 PDI_a_ERp44_like PDIa 36.7 43 0.00093 21.1 2.7 49 4-57 24-77 (100)
221 cd02965 HyaE HyaE family; HyaE 35.7 92 0.002 20.4 4.1 58 4-65 33-98 (111)
222 PF06110 DUF953: Eukaryotic pr 35.5 1.3E+02 0.0029 19.9 5.5 63 6-68 34-107 (119)
223 cd04911 ACT_AKiii-YclM-BS_1 AC 35.5 52 0.0011 20.0 2.7 25 9-33 14-38 (76)
224 cd02994 PDI_a_TMX PDIa family, 35.0 1.1E+02 0.0024 18.8 5.4 50 4-57 22-76 (101)
225 PRK10996 thioredoxin 2; Provis 34.7 1.4E+02 0.0031 20.0 8.9 57 3-63 57-119 (139)
226 cd02996 PDI_a_ERp44 PDIa famil 34.5 1.2E+02 0.0026 19.0 5.0 54 4-61 24-89 (108)
227 cd02985 TRX_CDSP32 TRX family, 34.4 1E+02 0.0022 19.4 4.2 59 4-63 21-84 (103)
228 KOG0190 Protein disulfide isom 34.4 1.5E+02 0.0032 25.1 6.0 71 5-79 49-134 (493)
229 PRK10877 protein disulfide iso 34.3 1.1E+02 0.0023 22.9 4.8 21 2-22 111-131 (232)
230 PF11417 Inhibitor_G39P: Loade 33.5 1.1E+02 0.0024 18.3 6.7 36 65-102 5-42 (71)
231 PF14595 Thioredoxin_9: Thiore 33.4 22 0.00048 23.9 0.9 51 4-57 47-102 (129)
232 COG3118 Thioredoxin domain-con 33.1 2.4E+02 0.0053 22.2 7.4 74 2-79 47-132 (304)
233 TIGR01764 excise DNA binding d 32.4 78 0.0017 16.3 3.3 26 49-74 23-48 (49)
234 PF09849 DUF2076: Uncharacteri 31.9 2.3E+02 0.005 21.6 8.3 66 66-144 6-71 (247)
235 PF13098 Thioredoxin_2: Thiore 31.9 41 0.00089 21.3 2.1 34 2-35 9-49 (112)
236 cd03022 DsbA_HCCA_Iso DsbA fam 31.0 62 0.0013 22.8 3.1 33 2-34 1-37 (192)
237 PTZ00102 disulphide isomerase; 30.9 3.1E+02 0.0066 22.7 8.1 73 2-78 53-139 (477)
238 PF04564 U-box: U-box domain; 30.1 1.2E+02 0.0027 17.8 5.0 26 52-78 15-40 (73)
239 TIGR01068 thioredoxin thioredo 29.6 1.3E+02 0.0029 18.1 8.2 54 4-61 20-79 (101)
240 cd03005 PDI_a_ERp46 PDIa famil 28.6 1.4E+02 0.0031 18.2 5.5 55 3-61 21-84 (102)
241 TIGR01126 pdi_dom protein disu 28.2 80 0.0017 19.3 2.9 52 2-57 17-74 (102)
242 PF12728 HTH_17: Helix-turn-he 27.9 1.1E+02 0.0023 16.3 3.7 28 49-76 23-50 (51)
243 cd00449 PLPDE_IV PyridoxaL 5'- 27.7 49 0.0011 24.8 2.1 57 19-75 196-254 (256)
244 TIGR01162 purE phosphoribosyla 27.0 59 0.0013 22.8 2.2 28 9-36 10-37 (156)
245 PRK06092 4-amino-4-deoxychoris 26.9 65 0.0014 24.4 2.7 57 19-76 208-264 (268)
246 cd02987 Phd_like_Phd Phosducin 26.7 1.7E+02 0.0036 20.8 4.6 57 5-66 90-151 (175)
247 PRK00293 dipZ thiol:disulfide 26.4 3.9E+02 0.0084 23.1 7.4 52 5-57 481-539 (571)
248 cd01557 BCAT_beta_family BCAT_ 25.7 34 0.00073 26.3 0.9 57 19-75 211-271 (279)
249 KOG0907 Thioredoxin [Posttrans 25.7 98 0.0021 20.0 3.0 57 5-65 28-89 (106)
250 cd02961 PDI_a_family Protein D 24.5 1.6E+02 0.0036 17.4 5.4 52 2-57 19-76 (101)
251 PRK13356 aminotransferase; Pro 23.7 56 0.0012 25.1 1.8 45 19-63 221-265 (286)
252 PF08534 Redoxin: Redoxin; In 23.4 1.1E+02 0.0023 20.5 3.0 55 3-59 34-93 (146)
253 cd02998 PDI_a_ERp38 PDIa famil 22.8 1.3E+02 0.0028 18.4 3.2 53 2-57 22-80 (105)
254 cd02995 PDI_a_PDI_a'_C PDIa fa 22.7 53 0.0011 20.2 1.3 51 2-57 22-78 (104)
255 PF00392 GntR: Bacterial regul 22.6 1.4E+02 0.003 16.9 3.0 31 135-167 4-35 (64)
256 PF09314 DUF1972: Domain of un 22.3 87 0.0019 22.6 2.4 20 59-78 154-173 (185)
257 PRK06606 branched-chain amino 22.3 60 0.0013 25.3 1.7 46 19-64 228-273 (306)
258 cd03006 PDI_a_EFP1_N PDIa fami 22.1 1.8E+02 0.0038 18.9 3.7 51 3-57 34-89 (113)
259 PF15608 PELOTA_1: PELOTA RNA 21.9 1.5E+02 0.0032 19.1 3.1 24 7-30 63-86 (100)
260 PRK07544 branched-chain amino 21.8 65 0.0014 24.9 1.8 45 19-63 225-269 (292)
261 PF00731 AIRC: AIR carboxylase 21.7 1E+02 0.0022 21.5 2.5 27 9-35 12-38 (150)
262 cd02993 PDI_a_APS_reductase PD 21.5 2.2E+02 0.0049 17.9 5.6 52 3-57 26-83 (109)
263 PRK15371 effector protein YopJ 21.5 2E+02 0.0044 22.4 4.3 41 127-170 22-62 (287)
264 TIGR01130 ER_PDI_fam protein d 20.9 4.6E+02 0.01 21.3 7.6 73 2-78 22-110 (462)
265 TIGR01122 ilvE_I branched-chai 20.1 72 0.0016 24.7 1.8 45 19-63 220-264 (298)
No 1
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=1.5e-37 Score=228.55 Aligned_cols=175 Identities=23% Similarity=0.311 Sum_probs=150.3
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHhhCCCC
Q 029374 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQP 80 (194)
Q Consensus 1 m~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~~~~~~ 80 (194)
||+||+++.||+|++|+++|+++|++|+.+.+++. .++++|+++||.|+||+|++||.+++||.||++||++++++.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~---~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~ 86 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD---NLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHP 86 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc---cCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCC
Confidence 79999999999999999999999999999999975 467899999999999999999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhh
Q 029374 81 PLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLV 160 (194)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~a 160 (194)
.|+|.++.+++.++.|+.++...+...... . ..+.+...+...+.+.+.+..+|++|++ ++|++|+++|+|
T Consensus 87 ~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~~l~G~~~t~A 157 (211)
T PRK09481 87 PLMPVYPVARGESRLMMHRIEKDWYSLMNK----I---VNGSASEADAARKQLREELLAIAPVFGE--KPYFMSEEFSLV 157 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----H---hcCCHHHHHHHHHHHHHHHHHHHHHhcc--CCcccCCCccHH
Confidence 899999999999999998776544332211 1 1122345667778899999999999987 899999999999
Q ss_pred hhHHHhhhhcc----------cccchhhhHHhhcCCCC
Q 029374 161 SFHCFIYVRSK----------PFYNTQSSFQKQGVETP 188 (194)
Q Consensus 161 D~~l~~~l~~~----------~~~~l~~w~~~~~~~~p 188 (194)
|+++++.+.+. .+|++.+|++++.+ +|
T Consensus 158 D~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~-rp 194 (211)
T PRK09481 158 DCYLAPLLWRLPVLGIELSGPGAKELKGYMTRVFE-RD 194 (211)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHhc-cH
Confidence 99999888652 46999999999998 44
No 2
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=1.3e-36 Score=224.09 Aligned_cols=184 Identities=26% Similarity=0.310 Sum_probs=154.6
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHhhCCCC-
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQP- 80 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~~~~~~- 80 (194)
||||+.+.||+|+||+++|+++|++|+.+.++..+++.+.+++++.||.|++|+|++||.+++||.+|++||++++++.
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~~ 82 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYADQG 82 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCCcC
Confidence 8999999999999999999999999999999988777788999999999999999999999999999999999999753
Q ss_pred -CCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHH-HHH---HhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCC
Q 029374 81 -PLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVK-YIE---EKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGD 155 (194)
Q Consensus 81 -~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~ 155 (194)
+|+|.++.++++++.|+.++.+.+.+........ ... .........+....++.+.++.+|++|++ ++|++||
T Consensus 83 ~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~Gd 160 (214)
T PLN02473 83 TDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLAT--NRYLGGD 160 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhcc--CCcccCC
Confidence 6999999999999999999988776543322211 111 11112244566778899999999999987 7899999
Q ss_pred CchhhhhHHHhhhhc-----------ccccchhhhHHhhcCCCC
Q 029374 156 EVFLVSFHCFIYVRS-----------KPFYNTQSSFQKQGVETP 188 (194)
Q Consensus 156 ~~t~aD~~l~~~l~~-----------~~~~~l~~w~~~~~~~~p 188 (194)
++|+||+++++.+.+ .++|++.+|++++.+ .|
T Consensus 161 ~~t~ADi~~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~-~p 203 (214)
T PLN02473 161 EFTLADLTHMPGMRYIMNETSLSGLVTSRENLNRWWNEISA-RP 203 (214)
T ss_pred CCCHHHHHHHHHHHHHHhccccHHHHhcCHHHHHHHHHHhc-Ch
Confidence 999999998877754 368999999999999 45
No 3
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=1.4e-36 Score=223.78 Aligned_cols=185 Identities=25% Similarity=0.278 Sum_probs=151.3
Q ss_pred CeeecccC--CCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHhhCC
Q 029374 1 MLKLFSYW--RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYP 78 (194)
Q Consensus 1 m~~Ly~~~--~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~~~~ 78 (194)
||+||+.. .||+|++|+++|+++||+|+.+.+++..++.+.++|++.||.|+||+|++||.+|+||.||++||+++++
T Consensus 5 ~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~~ 84 (214)
T PRK15113 5 AITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERFA 84 (214)
T ss_pred eEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHHHcC
Confidence 79999875 7999999999999999999999999987777889999999999999999999999999999999999998
Q ss_pred CCC---CCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCC
Q 029374 79 QPP---LLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGD 155 (194)
Q Consensus 79 ~~~---l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~ 155 (194)
+.. ++|.++.+++++++|+.++.+.+.+................+...+...+.+.+.+..+|++|++ +++|++|+
T Consensus 85 ~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~~l~G~ 163 (214)
T PRK15113 85 PPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAP-GQPNLFGE 163 (214)
T ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhc-CCCEeeCC
Confidence 765 99999999999999999997666543211110000011112334566777889999999999985 25799996
Q ss_pred CchhhhhHHHhhhhccc------ccchhhhHHhhcCCCC
Q 029374 156 EVFLVSFHCFIYVRSKP------FYNTQSSFQKQGVETP 188 (194)
Q Consensus 156 ~~t~aD~~l~~~l~~~~------~~~l~~w~~~~~~~~p 188 (194)
+|+||+++++.+.+.. .|++.+|++++.+ .|
T Consensus 164 -~TlADi~l~~~l~~~~~~~~~~~p~l~~~~~r~~~-rp 200 (214)
T PRK15113 164 -WCIADTDLALMLNRLVLHGDEVPERLADYATFQWQ-RA 200 (214)
T ss_pred -ccHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc-CH
Confidence 9999999999987631 2789999999988 44
No 4
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=1.9e-36 Score=223.31 Aligned_cols=181 Identities=22% Similarity=0.321 Sum_probs=147.3
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEe-----CC--eeeeeHHHHHHHH
Q 029374 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVD-----GD--FVVSDSFAILMYL 73 (194)
Q Consensus 1 m~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~-----~~--~~~~es~aI~~~L 73 (194)
|||||+.+ +++|++|+++|+++|++|+.+.+++..++.+.++|+++||.|+||+|++ || .+++||.||++||
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 89999654 8999999999999999999999998777777899999999999999996 45 4799999999999
Q ss_pred HhhCCCCCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCccc
Q 029374 74 EEKYPQPPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYAT 153 (194)
Q Consensus 74 ~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~ 153 (194)
+++++ .+.|.++.+++++++|+.|..+.+.+.+..............+...+...+.+.+.|..+|++|.+ ++|++
T Consensus 80 ~~~~~--~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~ 155 (215)
T PRK13972 80 AEKTG--LFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLEN--SPWLG 155 (215)
T ss_pred HHhcC--CCCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhcc--Ccccc
Confidence 99985 477888999999999999988777664422110000011112344566777899999999999987 79999
Q ss_pred CCCchhhhhHHHhhh-hc-------ccccchhhhHHhhcCC
Q 029374 154 GDEVFLVSFHCFIYV-RS-------KPFYNTQSSFQKQGVE 186 (194)
Q Consensus 154 G~~~t~aD~~l~~~l-~~-------~~~~~l~~w~~~~~~~ 186 (194)
|+++|+||+++++.+ .+ ..+|++.+|+++|.+.
T Consensus 156 Gd~~t~ADi~l~~~~~~~~~~~~~~~~~P~l~~w~~r~~~r 196 (215)
T PRK13972 156 GENYSIADIACWPWVNAWTRQRIDLAMYPAVKNWHERIRSR 196 (215)
T ss_pred CCCCCHHHHHHHHHHHHHhhcCCcchhCHHHHHHHHHHHhC
Confidence 999999999998766 33 3689999999999983
No 5
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=100.00 E-value=4.5e-35 Score=215.29 Aligned_cols=183 Identities=45% Similarity=0.760 Sum_probs=150.6
Q ss_pred eecccCCCchhHHHHHHHHHcCCcceEEEccCCC-CCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHhhCCCCC
Q 029374 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVK-GEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPP 81 (194)
Q Consensus 3 ~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~-~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~~~~~~~ 81 (194)
+||++..||+|++||++|+++||+|+.+.++... ++.+.+++.+.||.|++|+|++||.+++||.+|++||++++++..
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~~ 80 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPP 80 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCCC
Confidence 5899999999999999999999999999998732 345678899999999999999999999999999999999999878
Q ss_pred CCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchh
Q 029374 82 LLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEK--AGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFL 159 (194)
Q Consensus 82 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ 159 (194)
++|.++.+++++++|+.++...+.+............. .......+...+.+.+.|+.||++|++++++|++|+++|+
T Consensus 81 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~ 160 (210)
T TIGR01262 81 LLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTPTL 160 (210)
T ss_pred CCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCCCH
Confidence 99999999999999999987666543222222222111 1112234556677999999999999875567999999999
Q ss_pred hhhHHHhhhhc--------ccccchhhhHHhhcC
Q 029374 160 VSFHCFIYVRS--------KPFYNTQSSFQKQGV 185 (194)
Q Consensus 160 aD~~l~~~l~~--------~~~~~l~~w~~~~~~ 185 (194)
||+++++.+.+ ..+|++.+|+++|.+
T Consensus 161 ADi~~~~~l~~~~~~~~~~~~~p~l~~~~~~~~~ 194 (210)
T TIGR01262 161 ADLCLVPQVYNAERFGVDLTPYPTLRRIAAALAA 194 (210)
T ss_pred HHHHHHHHHHHHHHcCCCcccchHHHHHHHHHhc
Confidence 99999988765 368999999999988
No 6
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-35 Score=202.10 Aligned_cols=182 Identities=47% Similarity=0.765 Sum_probs=162.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCC-CCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHhhCCCC
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKG-EQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQP 80 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~-~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~~~~~~ 80 (194)
.+||+|+.|..++|||++|..+||+|+.+.+++..+ +....+|.+.||.++||+|++||.+++||.||++||++.+|++
T Consensus 6 piLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~P~p 85 (217)
T KOG0868|consen 6 PILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETYPDP 85 (217)
T ss_pred chhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcCCCC
Confidence 579999999999999999999999999999998876 3456799999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhh
Q 029374 81 PLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLV 160 (194)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~a 160 (194)
+|+|.|+..|+..++....+.+.+.|..+..++.+.+++.... ...+....+.+.|..||+.|..+.++|.+||++|+|
T Consensus 86 pLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~-~~~W~q~~ItkGF~ALEklL~~~aGkycvGDevtiA 164 (217)
T KOG0868|consen 86 PLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGY-GDQWAQHFITKGFTALEKLLKSHAGKYCVGDEVTIA 164 (217)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccch-hhHHHHHHHHHhHHHHHHHHHHccCCcccCceeehh
Confidence 9999999999999999999999999999888888887765333 378888999999999999999888999999999999
Q ss_pred hhHHHhhhhcc--------cccchhhhHHhhc
Q 029374 161 SFHCFIYVRSK--------PFYNTQSSFQKQG 184 (194)
Q Consensus 161 D~~l~~~l~~~--------~~~~l~~w~~~~~ 184 (194)
|+.+.+.++.+ .||-+.+-.+...
T Consensus 165 Dl~L~pqv~nA~rf~vdl~PYPti~ri~e~l~ 196 (217)
T KOG0868|consen 165 DLCLPPQVYNANRFHVDLTPYPTITRINEELA 196 (217)
T ss_pred hhccchhhhhhhhccccCCcCchHHHHHHHHH
Confidence 99999999884 4566655555443
No 7
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-34 Score=212.63 Aligned_cols=183 Identities=34% Similarity=0.462 Sum_probs=158.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCe-eeeeHHHHHHHHHhhCCCC
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDF-VVSDSFAILMYLEEKYPQP 80 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~-~~~es~aI~~~L~~~~~~~ 80 (194)
++||+...||+|.+|++++.++|++|+.+.+++.. +.+.++|++.||.|+||+|++++. +++||.+|++||+++||.+
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~-~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA-EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCccc-ccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCC
Confidence 68999999999999999999999999999999987 678899999999999999997655 8999999999999999976
Q ss_pred CCCCCCHH---HHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcC--ccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCC
Q 029374 81 PLLPSDLK---RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAG--ADERDIWAKTHIGKGFAALEKLLKDYAGKYATGD 155 (194)
Q Consensus 81 ~l~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~ 155 (194)
.++|.++. +|+.+..|..++...+.+.+....... ..... .....+...+.+...+..+|+.|++ ++|++|+
T Consensus 80 ~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~ 156 (211)
T COG0625 80 PLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRAL-LGSEPELLEAALEAARAEIRALLALLEALLAD--GPYLAGD 156 (211)
T ss_pred CcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhh-ccccccccHHHHHHHHHHHHHHHHHHHHHhcc--CCcccCC
Confidence 69998874 788888999999888887765554443 21211 3456778889999999999999998 9999999
Q ss_pred CchhhhhHHHhhhhcc--------cccchhhhHHhhcCCCCC
Q 029374 156 EVFLVSFHCFIYVRSK--------PFYNTQSSFQKQGVETPI 189 (194)
Q Consensus 156 ~~t~aD~~l~~~l~~~--------~~~~l~~w~~~~~~~~p~ 189 (194)
++|+||+++++.+.+. .+|++.+|++++.+ .|.
T Consensus 157 ~~tiAD~~~~~~~~~~~~~~~~~~~~p~l~~w~~r~~~-rp~ 197 (211)
T COG0625 157 RFTIADIALAPLLWRLALLGEELADYPALKAWYERVLA-RPA 197 (211)
T ss_pred CCCHHHHHHHHHHHHhhhcCcccccChHHHHHHHHHHc-CCc
Confidence 9999999999888873 39999999999986 454
No 8
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=3.4e-34 Score=211.36 Aligned_cols=184 Identities=26% Similarity=0.392 Sum_probs=150.8
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHhhCCC-
Q 029374 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQ- 79 (194)
Q Consensus 1 m~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~~~~~- 79 (194)
=+|||+ ..+++++||+++|+++|++|+.+.+++..++.++++|++.||.|+||+|+++|.+++||.+|++||+++++.
T Consensus 2 ~~~ly~-~~~~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~ 80 (215)
T PLN02395 2 VLKVYG-PAFASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYRSQ 80 (215)
T ss_pred eEEEEc-CCcCcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcCCC
Confidence 089997 455679999999999999999999998776677889999999999999999999999999999999999975
Q ss_pred -CCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHH-HHH---hcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccC
Q 029374 80 -PPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKY-IEE---KAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATG 154 (194)
Q Consensus 80 -~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G 154 (194)
.+|+|.++.+++.++.|+.+....+.+.+....... ... ...+.+..+...+.+.+.+..+|++|++ ++|++|
T Consensus 81 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G 158 (215)
T PLN02395 81 GPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSK--SKYLAG 158 (215)
T ss_pred CcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcC--CccccC
Confidence 369999999999999999998877665433222211 111 1222344566788899999999999987 789999
Q ss_pred CCchhhhhHHHhhhhc-----------ccccchhhhHHhhcCCCC
Q 029374 155 DEVFLVSFHCFIYVRS-----------KPFYNTQSSFQKQGVETP 188 (194)
Q Consensus 155 ~~~t~aD~~l~~~l~~-----------~~~~~l~~w~~~~~~~~p 188 (194)
+++|+||+++++.+.+ ..+|++.+|++++.+ .|
T Consensus 159 ~~~s~ADi~l~~~~~~~~~~~~~~~~~~~~p~L~~w~~~~~~-rp 202 (215)
T PLN02395 159 DFVSLADLAHLPFTEYLVGPIGKAYLIKDRKHVSAWWDDISS-RP 202 (215)
T ss_pred CCcCHHHHHHHHHHHHHhcccchhhhhccCchHHHHHHHHHc-Ch
Confidence 9999999999877643 257999999999998 44
No 9
>PRK11752 putative S-transferase; Provisional
Probab=100.00 E-value=1.7e-33 Score=213.01 Aligned_cols=181 Identities=25% Similarity=0.352 Sum_probs=144.8
Q ss_pred CeeecccCCCchhHHHHHHHHHc------CCcceEEEccCCCCCCCChhHHhhCCCCccceEEeC----CeeeeeHHHHH
Q 029374 1 MLKLFSYWRSSCSHRVRIGLNLK------GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG----DFVVSDSFAIL 70 (194)
Q Consensus 1 m~~Ly~~~~~p~~~~v~~~L~~~------gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~----~~~~~es~aI~ 70 (194)
||+||+. .||+|++|+++|+++ |++|+.+.+++..++...++|+++||.|+||+|+++ +.+++||.+|+
T Consensus 44 ~~~Ly~~-~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl 122 (264)
T PRK11752 44 PLQLYSL-GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAIL 122 (264)
T ss_pred CeEEecC-CCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHH
Confidence 6899975 699999999999997 999999999987777778999999999999999964 36899999999
Q ss_pred HHHHhhCCCCCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH-hcCccHHHHHHHHHHHHHHHHHHHHhhccCC
Q 029374 71 MYLEEKYPQPPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEE-KAGADERDIWAKTHIGKGFAALEKLLKDYAG 149 (194)
Q Consensus 71 ~~L~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~ 149 (194)
+||+++++ +|+|.++.+++.+++|+.+....+ +.....+...... ....+...+...+++.+.|+.+|++|++ +
T Consensus 123 ~YL~~~~~--~L~P~~~~era~v~~wl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~--~ 197 (264)
T PRK11752 123 LYLAEKFG--AFLPKDLAARTETLNWLFWQQGSA-PFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAE--H 197 (264)
T ss_pred HHHHHhcC--CcCCCCHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhcc--C
Confidence 99999997 499999999999999999886543 2111111111111 1111234566677889999999999987 7
Q ss_pred CcccCCCchhhhhHHHhhhhc---------------ccccchhhhHHhhcCCCC
Q 029374 150 KYATGDEVFLVSFHCFIYVRS---------------KPFYNTQSSFQKQGVETP 188 (194)
Q Consensus 150 ~~l~G~~~t~aD~~l~~~l~~---------------~~~~~l~~w~~~~~~~~p 188 (194)
+|++|+++|+|||++++.+.+ ..+|++.+|+++|.+ .|
T Consensus 198 ~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~-rP 250 (264)
T PRK11752 198 EYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAE-RP 250 (264)
T ss_pred CCCCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHh-CH
Confidence 899999999999999876422 357999999999998 44
No 10
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-33 Score=202.94 Aligned_cols=176 Identities=26% Similarity=0.357 Sum_probs=153.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhC-CCCccceEEeCCeeeeeHHHHHHHHHhhCC-C
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKIN-PIGYVPALVDGDFVVSDSFAILMYLEEKYP-Q 79 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~-p~~~~P~L~~~~~~~~es~aI~~~L~~~~~-~ 79 (194)
++||+++.|||++|++++|++|||+|+.+.+++.+ +++++++.| +.++||+|+++|..++||..|++|||+.++ +
T Consensus 10 vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~---Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~ 86 (231)
T KOG0406|consen 10 VKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTN---KSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSG 86 (231)
T ss_pred EEEEEeecChHHHHHHHHHHhcCCceEEEecCCCC---CCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCC
Confidence 58999999999999999999999999999999873 799999999 669999999999999999999999999999 6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchh
Q 029374 80 PPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFL 159 (194)
Q Consensus 80 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ 159 (194)
++++|+||.+|+..+-|.++++..+........ . ....+..+...+.+.+.|..+|+.|.+ +++|+.|+++++
T Consensus 87 ~~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~-----~-~~~~e~~~~~~~e~~e~l~~lE~el~k-~k~~fgG~~~G~ 159 (231)
T KOG0406|consen 87 PPILPSDPYERAQARFWAEYIDKKVFFVGRFVV-----A-AKGGEEQEAAKEELREALKVLEEELGK-GKDFFGGETIGF 159 (231)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHH-----h-hcCchHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCcCH
Confidence 999999999999999999999876654332111 1 112366778888999999999999994 489999999999
Q ss_pred hhhHHHhhhhc----------------ccccchhhhHHhhcCCC
Q 029374 160 VSFHCFIYVRS----------------KPFYNTQSSFQKQGVET 187 (194)
Q Consensus 160 aD~~l~~~l~~----------------~~~~~l~~w~~~~~~~~ 187 (194)
+|+++++.+.. ..+|+|.+|.++|.+..
T Consensus 160 vDi~~~p~~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~ 203 (231)
T KOG0406|consen 160 VDIAIGPSFERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDE 203 (231)
T ss_pred hhhhHHhhHHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcCh
Confidence 99999966544 37899999999999843
No 11
>PRK10542 glutathionine S-transferase; Provisional
Probab=100.00 E-value=1.9e-33 Score=205.31 Aligned_cols=177 Identities=23% Similarity=0.363 Sum_probs=145.3
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCC-CCChhHHhhCCCCccceEE-eCCeeeeeHHHHHHHHHhhCCC
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGE-QFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQ 79 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~-~~~~~~~~~~p~~~~P~L~-~~~~~~~es~aI~~~L~~~~~~ 79 (194)
|+||+...| ++++++++|+++||+|+.+.+++..++ ...++|.++||.|++|+|+ +||.+|+||.+|++||++++++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 589987655 799999999999999999999987543 3568899999999999998 6889999999999999999997
Q ss_pred CCCC-CCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCch
Q 029374 80 PPLL-PSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVF 158 (194)
Q Consensus 80 ~~l~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t 158 (194)
..++ |.++.++++++.|+.++.+.+.+.+.... . ....+...+...+.+.+.|..+|++|++ ++|++|+++|
T Consensus 80 ~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~s 152 (201)
T PRK10542 80 RQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLF----R-PDTPEEYKPTVRAQLEKKFQYVDEALAD--EQWICGQRFT 152 (201)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhcc----C-CCChHHHHHHHHHHHHHHHHHHHHHhcC--CCeeeCCCCc
Confidence 7766 56788999999999988776665432211 1 1111233456678899999999999987 7899999999
Q ss_pred hhhhHHHhhhhc--------ccccchhhhHHhhcCC
Q 029374 159 LVSFHCFIYVRS--------KPFYNTQSSFQKQGVE 186 (194)
Q Consensus 159 ~aD~~l~~~l~~--------~~~~~l~~w~~~~~~~ 186 (194)
+||+++++.+.+ ..+|++.+|++++.+.
T Consensus 153 ~ADi~l~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 188 (201)
T PRK10542 153 IADAYLFTVLRWAYAVKLNLEGLEHIAAYMQRVAER 188 (201)
T ss_pred HHhHHHHHHHHHhhccCCCcccchHHHHHHHHHHcC
Confidence 999999988876 2579999999999983
No 12
>PRK10357 putative glutathione S-transferase; Provisional
Probab=100.00 E-value=5.2e-33 Score=203.21 Aligned_cols=179 Identities=21% Similarity=0.191 Sum_probs=144.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEE-eCCeeeeeHHHHHHHHHhhCCCC
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQP 80 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~-~~~~~~~es~aI~~~L~~~~~~~ 80 (194)
|+||++..||++++|+++|+++|++|+.+.++... ..+++.+.||.|++|+|+ ++|.+++||.+|++||++++++.
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~---~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~ 77 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYN---ADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAP 77 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCC---CchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCC
Confidence 58999999999999999999999999999888653 345667789999999998 78899999999999999999877
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhh
Q 029374 81 PLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLV 160 (194)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~a 160 (194)
.|+|.++.+++.+++|..++.+.+......................+...+.+.+.|+.+|++|.+ ++ ++||++|+|
T Consensus 78 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~-l~Gd~~t~A 154 (202)
T PRK10357 78 AMLPRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVD--GT-LKTDTVNLA 154 (202)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhcc--Cc-ccCCCcCHH
Confidence 899999999999999988877665543321111111111112234456778899999999999987 66 999999999
Q ss_pred hhHHHhhhhc-----------ccccchhhhHHhhcCC
Q 029374 161 SFHCFIYVRS-----------KPFYNTQSSFQKQGVE 186 (194)
Q Consensus 161 D~~l~~~l~~-----------~~~~~l~~w~~~~~~~ 186 (194)
|+++++.+.+ ..+|++.+|++++.+.
T Consensus 155 Di~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~i~~r 191 (202)
T PRK10357 155 TIAIACAVGYLNFRRVAPGWCVDRPHLVKLVENLFQR 191 (202)
T ss_pred HHHHHHHHHHHHhcccCcchhhcChHHHHHHHHHhcC
Confidence 9999888764 2468999999999984
No 13
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-32 Score=200.31 Aligned_cols=185 Identities=33% Similarity=0.445 Sum_probs=162.5
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHhhCC-CC
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYP-QP 80 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~~~~-~~ 80 (194)
|+||++..|+.|++|.++++++|++|+.+.++...+++++++|+++||.|+||+|+|+|..++||.||+.||.++|. ..
T Consensus 3 ~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~~~ 82 (226)
T KOG0867|consen 3 LKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYGPLG 82 (226)
T ss_pred ceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999996 33
Q ss_pred C-CCCCCHHHHHHHHHHHHHHhcchhhHH--HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCc
Q 029374 81 P-LLPSDLKRKAINYQAANIVSSSIQPLQ--NLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEV 157 (194)
Q Consensus 81 ~-l~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~ 157 (194)
. ++|.++.+++.+++|+.+..+.+.+.. ...+.........+....+.....+.+.+..+|..|.+ +.|+.|+++
T Consensus 83 ~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~--~~yl~g~~~ 160 (226)
T KOG0867|consen 83 GILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKT--QVYLAGDQL 160 (226)
T ss_pred cccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHcc--CCcccCCcc
Confidence 4 999999999999999999999988763 33333322233335567888999999999999999998 999999999
Q ss_pred hhhhhHHHhhhhcc-----------cccchhhhHHhhcCCCCC
Q 029374 158 FLVSFHCFIYVRSK-----------PFYNTQSSFQKQGVETPI 189 (194)
Q Consensus 158 t~aD~~l~~~l~~~-----------~~~~l~~w~~~~~~~~p~ 189 (194)
|+||+.+.+.+... +++++.+|++++.+. |.
T Consensus 161 tlADl~~~~~~~~~~~~~~~~~~~~~~p~v~~W~~~~~~~-P~ 202 (226)
T KOG0867|consen 161 TLADLSLASTLSQFQGKFATEKDFEKYPKVARWYERIQKR-PA 202 (226)
T ss_pred cHHHHHHhhHHHHHhHhhhhhhhhhhChHHHHHHHHHHhC-cc
Confidence 99999887776553 679999999999984 53
No 14
>PLN02378 glutathione S-transferase DHAR1
Probab=99.97 E-value=6.6e-30 Score=188.08 Aligned_cols=161 Identities=26% Similarity=0.282 Sum_probs=125.3
Q ss_pred cCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHhhCCCCCCCCCC
Q 029374 7 YWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPPLLPSD 86 (194)
Q Consensus 7 ~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~~~~~~~l~p~~ 86 (194)
+..||||+||+++|+++|++|+.+.+++. .++++|++.||.|+||+|++||.+++||.+|++||++++++..+ .+
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~~e~~~v~~~---~~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l--~~ 91 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLTYKIHLINLS---DKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPL--KT 91 (213)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEeCcc---cCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCCCC--CC
Confidence 46799999999999999999999999986 35679999999999999999999999999999999999987655 35
Q ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHh
Q 029374 87 LKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFI 166 (194)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~ 166 (194)
+.+++.+...+. ..+.. ..... ...+...+.+.+.|..+|++|.+++++|++||++|+||+++++
T Consensus 92 ~~~~a~i~~~~~-------~~~~~----~~~~~----~~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~ 156 (213)
T PLN02378 92 PAEFASVGSNIF-------GTFGT----FLKSK----DSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAP 156 (213)
T ss_pred HHHHHHHHHHHH-------HHHHH----HHhcC----ChhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHHH
Confidence 666666554321 11111 11111 1112334577788999999998544799999999999999988
Q ss_pred hhhc--------------ccccchhhhHHhhcCCCC
Q 029374 167 YVRS--------------KPFYNTQSSFQKQGVETP 188 (194)
Q Consensus 167 ~l~~--------------~~~~~l~~w~~~~~~~~p 188 (194)
.+.+ ..+|++.+|+++|.+ .|
T Consensus 157 ~~~~l~~~~~~~~~~~~~~~~p~l~~w~~~~~~-rp 191 (213)
T PLN02378 157 KLYHLQVALGHFKSWSVPESFPHVHNYMKTLFS-LD 191 (213)
T ss_pred HHHHHHHHHHHhcCCCchhHhHHHHHHHHHHhc-CC
Confidence 8543 247899999999998 44
No 15
>PRK10387 glutaredoxin 2; Provisional
Probab=99.97 E-value=2e-30 Score=190.54 Aligned_cols=178 Identities=19% Similarity=0.156 Sum_probs=132.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEE-eCCeeeeeHHHHHHHHHhhCCCC
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQP 80 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~-~~~~~~~es~aI~~~L~~~~~~~ 80 (194)
|+||++..||+|+||+++|+++|++|+.+.++... ... ....||.++||+|+ +||..++||.+|++||+++|+++
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~--~~~--~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~ 76 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDD--EAT--PIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKP 76 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCc--hhh--HHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCc
Confidence 68999999999999999999999999998886542 112 25788999999995 88999999999999999999875
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHH-------------H----HHHhcCcc----HHHHHHHHHHHHHHHH
Q 029374 81 PLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVK-------------Y----IEEKAGAD----ERDIWAKTHIGKGFAA 139 (194)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~----~~~~~~~~----~~~~~~~~~~~~~l~~ 139 (194)
.+.+ .+++.++.|+.++...+...+...+.. . .....+.. ...+...+.+.+.|+.
T Consensus 77 ~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (210)
T PRK10387 77 LLTG---KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRA 153 (210)
T ss_pred cCCC---cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHH
Confidence 4431 246778888877755444322111100 0 00000100 0114567789999999
Q ss_pred HHHHhhccCCCcccCCCchhhhhHHHhhhhcc-------cccchhhhHHhhcCCCCCC
Q 029374 140 LEKLLKDYAGKYATGDEVFLVSFHCFIYVRSK-------PFYNTQSSFQKQGVETPIG 190 (194)
Q Consensus 140 le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~-------~~~~l~~w~~~~~~~~p~~ 190 (194)
+|++|+ ++|++|+++|+||+++++.+.+. ..|++.+|++||.+ .|.-
T Consensus 154 le~~L~---~~~l~G~~~s~ADi~l~~~l~~~~~~~~~~~~p~l~~w~~r~~~-r~~~ 207 (210)
T PRK10387 154 LDPLIV---KPNAVNGELSTDDIHLFPILRNLTLVKGIEWPPRVADYRDNMSK-KTQV 207 (210)
T ss_pred HHHHhc---CccccCCCCCHHHHHHHHHHhcceeecCCCCCHHHHHHHHHHHH-HhCC
Confidence 999995 38999999999999999999873 25799999999998 4543
No 16
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.97 E-value=7.9e-29 Score=181.42 Aligned_cols=170 Identities=19% Similarity=0.215 Sum_probs=125.7
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHH--------hhCCCCccceEEeCCeeeeeHHHHHHHH
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFL--------KINPIGYVPALVDGDFVVSDSFAILMYL 73 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~--------~~~p~~~~P~L~~~~~~~~es~aI~~~L 73 (194)
++||++..++++++||++|+++|++|+.+.++.. . ++++ +.||.|++|+|++||.+++||.||++||
T Consensus 5 ~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~----~-~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YL 79 (205)
T PTZ00057 5 IVLYYFDARGKAELIRLIFAYLGIEYTDKRFGEN----G-DAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYL 79 (205)
T ss_pred eEEEecCCCcchHHHHHHHHHcCCCeEEEecccc----c-hHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence 8999999999999999999999999999877421 1 2332 4799999999999999999999999999
Q ss_pred HhhCCCCCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCccc
Q 029374 74 EEKYPQPPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYAT 153 (194)
Q Consensus 74 ~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~ 153 (194)
+++++ +.+.+..++..+........+....... . ... .+...+...+.+.+.+..||++|++++++|++
T Consensus 80 a~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~-----~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~ 148 (205)
T PTZ00057 80 SKKYK---ICGESELNEFYADMIFCGVQDIHYKFNN-T--NLF-----KQNETTFLNEELPKWSGYFENILKKNHCNYFV 148 (205)
T ss_pred HHHcC---CCCCCHHHHHHHHHHHHHHHHHHHHHhh-h--HHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeee
Confidence 99997 3445544444443333222111111110 0 000 11223556788999999999999875568999
Q ss_pred CCCchhhhhHHHhhhhc---------ccccchhhhHHhhcCCCC
Q 029374 154 GDEVFLVSFHCFIYVRS---------KPFYNTQSSFQKQGVETP 188 (194)
Q Consensus 154 G~~~t~aD~~l~~~l~~---------~~~~~l~~w~~~~~~~~p 188 (194)
|+++|+||+++++.+.+ .++|++.+|++++.+ +|
T Consensus 149 Gd~~T~AD~~l~~~~~~~~~~~~~~l~~~P~l~~~~~r~~~-~P 191 (205)
T PTZ00057 149 GDNLTYADLAVFNLYDDIETKYPNSLKNFPLLKAHNEFISN-LP 191 (205)
T ss_pred CCcccHHHHHHHHHHHHHHHhChhhhccChhHHHHHHHHHh-Ch
Confidence 99999999999888754 358999999999998 44
No 17
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.97 E-value=8.5e-29 Score=182.99 Aligned_cols=162 Identities=20% Similarity=0.210 Sum_probs=126.8
Q ss_pred CCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHhhCCC---CCCCC
Q 029374 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQ---PPLLP 84 (194)
Q Consensus 8 ~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~~~~~---~~l~p 84 (194)
..||+|++|+++|.++|++|+.+.+++.. ++++|+++||.|++|+|+++|.+++||.+|++||+++|+. +.+.|
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~---~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p 93 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKR---KPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSP 93 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCC---CCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCC
Confidence 56999999999999999999999999873 5789999999999999999999999999999999999975 34666
Q ss_pred CCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhc----------------cC
Q 029374 85 SDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKD----------------YA 148 (194)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~----------------~~ 148 (194)
.++..++.... +.+.+... ... ..+...+...+.+.+.++.||+.|.+ .+
T Consensus 94 ~~~~~~~~~~~--------l~~~~~~~----~~~--~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~ 159 (236)
T TIGR00862 94 KHPESNTAGLD--------IFAKFSAY----IKN--SNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSR 159 (236)
T ss_pred CCHHHHHHHHH--------HHHHHHHH----HHc--CCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccC
Confidence 66655443211 11111111 111 12234455667799999999999973 14
Q ss_pred CCcccCCCchhhhhHHHhhhhc--------------ccccchhhhHHhhcCC
Q 029374 149 GKYATGDEVFLVSFHCFIYVRS--------------KPFYNTQSSFQKQGVE 186 (194)
Q Consensus 149 ~~~l~G~~~t~aD~~l~~~l~~--------------~~~~~l~~w~~~~~~~ 186 (194)
++|+.|+++|+|||++++.+.+ ..++++.+|++++.+.
T Consensus 160 ~~f~~Gd~~tlaD~~l~p~l~~l~~~~~~~~~~~i~~~~p~l~~w~~~~~~~ 211 (236)
T TIGR00862 160 RKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFDIPAEFTGVWRYLSNAYAR 211 (236)
T ss_pred CCcccCCccchhhHHHHHHHHHHHHHHHHHhCcCccccCchHHHHHHHHhcc
Confidence 8999999999999999999855 3678999999999884
No 18
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.96 E-value=1.1e-28 Score=186.11 Aligned_cols=159 Identities=23% Similarity=0.262 Sum_probs=124.9
Q ss_pred cCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHhhCCCCCCCCCC
Q 029374 7 YWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPPLLPSD 86 (194)
Q Consensus 7 ~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~~~~~~~l~p~~ 86 (194)
...||+|++++++|+++|++|+.+.+++. .++++|+++||.|++|+|+++|.+++||.+|++||++++++..+. +
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~---~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~--~ 144 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLT---NKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDPPLA--T 144 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcC---cCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCCCCC--C
Confidence 44599999999999999999999999886 467899999999999999988899999999999999999986664 5
Q ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHh
Q 029374 87 LKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFI 166 (194)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~ 166 (194)
+.+++.+..++... +. ...... + ..+...+.+.+.|..||++|++ +++|++|+++|+||+++++
T Consensus 145 ~~era~i~~~l~~~---~~--------~~~~~~--~--~~~~~~~~l~~~l~~LE~~L~~-~g~yl~Gd~~SlADi~l~p 208 (265)
T PLN02817 145 PPEKASVGSKIFST---FI--------GFLKSK--D--PGDGTEQALLDELTSFDDYIKE-NGPFINGEKISAADLSLGP 208 (265)
T ss_pred HHHHHHHHHHHHHH---HH--------HHhccC--C--cchHHHHHHHHHHHHHHHHHhc-CCCeeCCCCCCHHHHHHHH
Confidence 67788776643211 11 111111 1 1112235677889999999985 3699999999999999998
Q ss_pred hhhc--------------ccccchhhhHHhhcCC
Q 029374 167 YVRS--------------KPFYNTQSSFQKQGVE 186 (194)
Q Consensus 167 ~l~~--------------~~~~~l~~w~~~~~~~ 186 (194)
.+.+ ..+|++.+|+++|.+.
T Consensus 209 ~L~~l~~~~~~~~~~~i~~~~P~L~~w~~ri~~r 242 (265)
T PLN02817 209 KLYHLEIALGHYKNWSVPDSLPFVKSYMKNIFSM 242 (265)
T ss_pred HHHHHHHHHHHhcCCCccccCHHHHHHHHHHhcc
Confidence 7632 2579999999999883
No 19
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.96 E-value=2.1e-28 Score=179.54 Aligned_cols=176 Identities=18% Similarity=0.183 Sum_probs=128.0
Q ss_pred eecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEE-eCCeeeeeHHHHHHHHHhhCCCCC
Q 029374 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQPP 81 (194)
Q Consensus 3 ~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~-~~~~~~~es~aI~~~L~~~~~~~~ 81 (194)
|||++..||+|+|||++|+++|++|+.+.+.... . ....+.||.|++|+|+ +||.+++||.+|++||+++|+.+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~--~--~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~ 76 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDD--E--ETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPL 76 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCc--c--hhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCcc
Confidence 6899999999999999999999999987765432 1 2347899999999998 899999999999999999998644
Q ss_pred CCCCCHHHHHHHHHHHHHHhcchhhHHHHHHH-------------HHHHH-h---cCcc----HHHHHHHHHHHHHHHHH
Q 029374 82 LLPSDLKRKAINYQAANIVSSSIQPLQNLAVV-------------KYIEE-K---AGAD----ERDIWAKTHIGKGFAAL 140 (194)
Q Consensus 82 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~-~---~~~~----~~~~~~~~~~~~~l~~l 140 (194)
+.+. .+..++.|+.++...+...+...+. ..... . .+.. ...+...+.+.+.|+.+
T Consensus 77 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~l 153 (209)
T TIGR02182 77 LTGK---VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEEL 153 (209)
T ss_pred CCCC---ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHH
Confidence 4332 3456667766654444322211110 00000 0 0000 00135567899999999
Q ss_pred HHHhhccCCCcccCCCchhhhhHHHhhhhcc------ccc-chhhhHHhhcCCCCC
Q 029374 141 EKLLKDYAGKYATGDEVFLVSFHCFIYVRSK------PFY-NTQSSFQKQGVETPI 189 (194)
Q Consensus 141 e~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~------~~~-~l~~w~~~~~~~~p~ 189 (194)
|++|++ ++|+.| ++|+||+++++.+.+. .++ ++.+|++||++ .+.
T Consensus 154 e~~L~~--~~~l~g-~~TiADi~l~~~l~~~~~~~~~~~p~~l~~w~~Ri~a-r~~ 205 (209)
T TIGR02182 154 DKLIDG--PNAVNG-ELSEDDILVFPLLRNLTLVAGINWPSRVADYLDNMSK-KSK 205 (209)
T ss_pred HHHHhC--ccccCC-CCCHHHHHHHHHhcCeeeecCCCCChHHHHHHHHHHH-HhC
Confidence 999998 899965 6999999999999884 356 89999999997 344
No 20
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.3e-25 Score=159.37 Aligned_cols=177 Identities=17% Similarity=0.138 Sum_probs=142.5
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHhhCCCCC
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPP 81 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~~~~~~~ 81 (194)
++|+|+....+++.+|++++..|++|+.+++...+. .+......|+|++|+|..||..+.+|.||++||+++++
T Consensus 4 ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~---w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~g--- 77 (206)
T KOG1695|consen 4 YKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA---WEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFG--- 77 (206)
T ss_pred eEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc---hhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHhC---
Confidence 799999999999999999999999999999998752 23333447999999999999999999999999999997
Q ss_pred CCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHH-HHHHHHHHHHHHHHHHhhccCCCcccCCCchhh
Q 029374 82 LLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDI-WAKTHIGKGFAALEKLLKDYAGKYATGDEVFLV 160 (194)
Q Consensus 82 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~a 160 (194)
+.+.++.+.+.++.+.+.+.+.....+........ ....+...+ .......+.+..+++.|.++++.||+||++|+|
T Consensus 78 l~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~--~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~a 155 (206)
T KOG1695|consen 78 LAGKTEEEEAWVDMIVDQFKDFRWEIFRQPYTAPE--AGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDKLTWA 155 (206)
T ss_pred cCCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhhh--hccchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCcccHH
Confidence 89999999999999998887766543222222111 111112222 566788899999999999777889999999999
Q ss_pred hhHHHhhhhcc----------cccchhhhHHhhcCC
Q 029374 161 SFHCFIYVRSK----------PFYNTQSSFQKQGVE 186 (194)
Q Consensus 161 D~~l~~~l~~~----------~~~~l~~w~~~~~~~ 186 (194)
|+.++..+... .+|+++++.+++.+.
T Consensus 156 Dl~i~e~l~~l~~~~~~~~~~~~P~L~a~~~kv~~~ 191 (206)
T KOG1695|consen 156 DLVIAEHLDTLEELLDPSALDHFPKLKAFKERVSSI 191 (206)
T ss_pred HHHHHHHHHHHHHhcCchhhccChHHHHHHHHHhcC
Confidence 99999888762 458899999999884
No 21
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.90 E-value=4.9e-23 Score=148.83 Aligned_cols=185 Identities=22% Similarity=0.239 Sum_probs=134.6
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHhhCCC-C
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQ-P 80 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~~~~~-~ 80 (194)
+.||+++.|..++|||+++++|||.|+...|++..++...+||..+||.|.||||+++..+|+++..|++|++++|-+ .
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf~ger 106 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTFTGER 106 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhhcccc
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999998874 5
Q ss_pred CCCCC-CHHHHHHHHHHHH---------HHhcc----------hhhHHH---HHHHH----------------------H
Q 029374 81 PLLPS-DLKRKAINYQAAN---------IVSSS----------IQPLQN---LAVVK----------------------Y 115 (194)
Q Consensus 81 ~l~p~-~~~~~~~~~~~~~---------~~~~~----------~~~~~~---~~~~~----------------------~ 115 (194)
.|.|. +..+..++.+... |-.+. ..|..+ ....+ .
T Consensus 107 ~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~ak 186 (325)
T KOG4420|consen 107 VLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYLAK 186 (325)
T ss_pred cccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHH
Confidence 57775 2222222211111 11100 000000 00000 0
Q ss_pred HH------HhcCccHHHHHHHHHHHHHHHHHHHHhhccC--CCcccCCCchhhhhHHHhhhhcc-------------ccc
Q 029374 116 IE------EKAGADERDIWAKTHIGKGFAALEKLLKDYA--GKYATGDEVFLVSFHCFIYVRSK-------------PFY 174 (194)
Q Consensus 116 ~~------~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~--~~~l~G~~~t~aD~~l~~~l~~~-------------~~~ 174 (194)
.. ..-.+....++....+...|...|.-|.++. ..||+|+.+|+||+.+.+.|++. +.|
T Consensus 187 qkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e~~yw~~gsrp 266 (325)
T KOG4420|consen 187 QKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLEKKYWEDGSRP 266 (325)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccHHHhcccCCCc
Confidence 00 0001123455566667777777887777632 58999999999999999999983 679
Q ss_pred chhhhHHhhcCC
Q 029374 175 NTQSSFQKQGVE 186 (194)
Q Consensus 175 ~l~~w~~~~~~~ 186 (194)
++..+|+++++.
T Consensus 267 nle~Yf~rvrrR 278 (325)
T KOG4420|consen 267 NLESYFERVRRR 278 (325)
T ss_pred cHHHHHHHHHhh
Confidence 999999999873
No 22
>PLN02907 glutamate-tRNA ligase
Probab=99.89 E-value=2.1e-22 Score=168.99 Aligned_cols=145 Identities=12% Similarity=0.099 Sum_probs=121.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEE-eCCeeeeeHHHHHHHHHhhCCCC
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQP 80 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~-~~~~~~~es~aI~~~L~~~~~~~ 80 (194)
++||+.+.| .+.++.++|++.|++|+.+. .+|.|++|+|+ +||..++||.||++||++.+++.
T Consensus 3 ~kLy~~~~S-~~~~v~~~L~~lgv~~e~~~---------------~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~ 66 (722)
T PLN02907 3 AKLSFPPDS-PPLAVIAAAKVAGVPLTIDP---------------SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLP 66 (722)
T ss_pred EEEEECCCC-ChHHHHHHHHHcCCCcEEee---------------cCCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCc
Confidence 789965555 56789999999999999864 14899999999 68899999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhh
Q 029374 81 PLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLV 160 (194)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~a 160 (194)
.|+|.++.+++.+++|+.++..... . ..+...++.||++|++ ++||+|+++|+|
T Consensus 67 ~L~p~d~~erAqV~qWL~~~~~~~~------------------~------~~l~~~L~~LE~~L~~--rtYLvGd~lTLA 120 (722)
T PLN02907 67 GFYGQDAFESSQVDEWLDYAPTFSS------------------G------SEFENACEYVDGYLAS--RTFLVGYSLTIA 120 (722)
T ss_pred CCCCCCHHHHHHHHHHHHHHhhccc------------------H------HHHHHHHHHHHHHhcc--CCeecCCCCCHH
Confidence 8999999999999999998753210 0 1345678999999987 899999999999
Q ss_pred hhHHHhhhhc-----------ccccchhhhHHhhcCCCCC
Q 029374 161 SFHCFIYVRS-----------KPFYNTQSSFQKQGVETPI 189 (194)
Q Consensus 161 D~~l~~~l~~-----------~~~~~l~~w~~~~~~~~p~ 189 (194)
|+++++.+.. ..+|++.+|+++|.+. |+
T Consensus 121 DIaL~~~L~~~~~~~~~~~~~~~yPnL~RW~erI~ar-Ps 159 (722)
T PLN02907 121 DIAIWSGLAGSGQRWESLRKSKKYQNLVRWFNSISAE-YS 159 (722)
T ss_pred HHHHHHHHHhhhhhhhcccccccCHHHHHHHHHHHhC-CC
Confidence 9999887622 3689999999999994 54
No 23
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.86 E-value=2.2e-21 Score=118.67 Aligned_cols=73 Identities=38% Similarity=0.606 Sum_probs=68.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHH
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~ 74 (194)
++||++..||+|++|+++|+++|++|+.+.+++..++.+.++|.++||.|++|+|++||.+++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999999987776778899999999999999999999999999999985
No 24
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.2e-20 Score=132.71 Aligned_cols=161 Identities=23% Similarity=0.251 Sum_probs=125.2
Q ss_pred CCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHhhCCCCCCCCC-C
Q 029374 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPPLLPS-D 86 (194)
Q Consensus 8 ~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~~~~~~~l~p~-~ 86 (194)
-.||+|+++.+.|.++|++|+++.|++. .++++|....|.+++|+|..|+.+++||..|.++|+++++.+.+--- +
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~---~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~ 95 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLS---RKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLAP 95 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecC---CCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccCC
Confidence 3599999999999999999999999998 47889999999999999999999999999999999999997554321 3
Q ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhc-cCCCcccCCCchhhhhHHH
Q 029374 87 LKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKD-YAGKYATGDEVFLVSFHCF 165 (194)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~~~l~G~~~t~aD~~l~ 165 (194)
++.......+...+...+ ....+++-+.....+.+.|+.||++|.. +.++||.||++|+||+.+.
T Consensus 96 ~E~asag~diF~kF~~fi--------------~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLl 161 (221)
T KOG1422|consen 96 PESASAGSDIFAKFSAFI--------------KKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLL 161 (221)
T ss_pred HHHHhhHHHHHHHHHHHH--------------hCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhc
Confidence 322222222222211110 0112234566677888999999999997 6799999999999999999
Q ss_pred hhhhc--------------ccccchhhhHHhhcC
Q 029374 166 IYVRS--------------KPFYNTQSSFQKQGV 185 (194)
Q Consensus 166 ~~l~~--------------~~~~~l~~w~~~~~~ 185 (194)
+-|+. ..++++.+|+..+.+
T Consensus 162 PKL~~i~va~k~yk~~~IP~~lt~V~rYl~~~ya 195 (221)
T KOG1422|consen 162 PKLHHIKVAAKHYKNFEIPASLTGVWRYLKNAYA 195 (221)
T ss_pred hhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHh
Confidence 99987 367888888887765
No 25
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.85 E-value=6.2e-21 Score=119.35 Aligned_cols=77 Identities=47% Similarity=0.709 Sum_probs=71.0
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeC---CeeeeeHHHHHHHHHhhC
Q 029374 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG---DFVVSDSFAILMYLEEKY 77 (194)
Q Consensus 1 m~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~---~~~~~es~aI~~~L~~~~ 77 (194)
|++||+++. |+|++++++|+++|++|+.+.+++..++.+.++|.+.||.+++|+|+++ |..++||.+|++||++++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 899998775 9999999999999999999999987666678899999999999999976 899999999999999998
Q ss_pred C
Q 029374 78 P 78 (194)
Q Consensus 78 ~ 78 (194)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 6
No 26
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.85 E-value=4.2e-21 Score=118.86 Aligned_cols=75 Identities=25% Similarity=0.211 Sum_probs=66.7
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEe--CCeeeeeHHHHHHHHHhhC
Q 029374 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVD--GDFVVSDSFAILMYLEEKY 77 (194)
Q Consensus 1 m~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~--~~~~~~es~aI~~~L~~~~ 77 (194)
|++||++..||+|+||+++|+++|++|+.+.++.. +...+++.+.||.+++|+|++ +|.+++||.+|++||+++|
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~--~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPKG--SPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCCC--hHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 89999999999999999999999999999887532 234578999999999999996 4689999999999999875
No 27
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.84 E-value=1.1e-20 Score=116.44 Aligned_cols=74 Identities=47% Similarity=0.785 Sum_probs=69.5
Q ss_pred ecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHhhCCCC
Q 029374 4 LFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQP 80 (194)
Q Consensus 4 Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~~~~~~ 80 (194)
||++..||||+|+|++|+++||+|+.+.++..+ +.+++.+.||.+++|+|++||.+++||.+|++||+++|+++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~---~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEE---KRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTS---TSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCccc---chhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 799999999999999999999999999999663 47899999999999999999999999999999999999864
No 28
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.84 E-value=2e-20 Score=115.06 Aligned_cols=74 Identities=45% Similarity=0.671 Sum_probs=69.5
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHh
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~ 75 (194)
|+||+++.||+|++++++|+++|++|+.+.+++..++.+.+++.+.||.|++|+|+++|..++||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 68999999999999999999999999999999877666789999999999999999999999999999999974
No 29
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.83 E-value=5.2e-20 Score=113.73 Aligned_cols=76 Identities=49% Similarity=0.751 Sum_probs=70.6
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHhhC
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKY 77 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~~~ 77 (194)
++||+++.|++|++++++|+++|++|+.+.++..+++...+++.+.||.|++|+|+++|.+++||.||++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5899999999999999999999999999999987666667899999999999999999999999999999999875
No 30
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.83 E-value=6.1e-20 Score=113.43 Aligned_cols=75 Identities=48% Similarity=0.725 Sum_probs=69.6
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHhh
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~~ 76 (194)
++||+.+.||+|++++++|+++|++|+.+.++...++.+.+++.+.||.|++|+|+++|..++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 799999999999999999999999999999998766566789999999999999999999999999999999863
No 31
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.82 E-value=8.9e-20 Score=111.79 Aligned_cols=73 Identities=40% Similarity=0.567 Sum_probs=67.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHhhC
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKY 77 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~~~ 77 (194)
|+||+...||+|++++++|+++|++|+.+.++.. .+.+++++.||.|++|+|+++|..++||.+|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPD---NPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCC---CCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 6899999999999999999999999999998865 456899999999999999999999999999999999875
No 32
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.82 E-value=1.5e-19 Score=132.40 Aligned_cols=180 Identities=18% Similarity=0.189 Sum_probs=120.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHh------
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE------ 75 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~------ 75 (194)
++||.|..||||-+||.+|.+.||+|++++|++- ...-++.+...+||+|...|..++||++|+.-|..
T Consensus 91 l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV-----~r~eIk~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~~~ 165 (370)
T KOG3029|consen 91 LVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPV-----LRQEIKWSSYKKVPILLIRGEQMVDSSVIISLLATYLQDKR 165 (370)
T ss_pred EEEEeeccCchHHHHHHHHhhcCCceEEEEecch-----hhhhccccccccccEEEeccceechhHHHHHHHHHHhccCC
Confidence 6899999999999999999999999999999975 33345667889999999767789999999876532
Q ss_pred --------hCCCCCCC----------------------CC-CHHHHHHHHHHHHHHhcchhhHHHHHHHH----------
Q 029374 76 --------KYPQPPLL----------------------PS-DLKRKAINYQAANIVSSSIQPLQNLAVVK---------- 114 (194)
Q Consensus 76 --------~~~~~~l~----------------------p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 114 (194)
.||-..++ |. +.+.+..-+.|-+|+++.+-..+....+.
T Consensus 166 q~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFe 245 (370)
T KOG3029|consen 166 QDLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFE 245 (370)
T ss_pred CCHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHH
Confidence 33310000 00 11222234455555554432211111110
Q ss_pred -----------------------------HHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHH
Q 029374 115 -----------------------------YIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCF 165 (194)
Q Consensus 115 -----------------------------~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~ 165 (194)
...+...........++.+.+.++.+-..|++ +++|+.|++|++||+.+|
T Consensus 246 wf~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgk-nr~flGG~kPnLaDLsvf 324 (370)
T KOG3029|consen 246 WFSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGK-NRPFLGGKKPNLADLSVF 324 (370)
T ss_pred HHHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCC-CCCccCCCCCchhhhhhh
Confidence 00111111122333556677777777777765 589999999999999999
Q ss_pred hhhhcc----------cccchhhhHHhhcCCC
Q 029374 166 IYVRSK----------PFYNTQSSFQKQGVET 187 (194)
Q Consensus 166 ~~l~~~----------~~~~l~~w~~~~~~~~ 187 (194)
+.++.+ ....+.+||-+|+.+.
T Consensus 325 Gvl~sm~gc~afkd~~q~t~I~eW~~rmealV 356 (370)
T KOG3029|consen 325 GVLRSMEGCQAFKDCLQNTSIGEWYYRMEALV 356 (370)
T ss_pred hhhhHhhhhhHHHHHHhcchHHHHHHHHHHHH
Confidence 999883 5678899999998753
No 33
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.81 E-value=1.3e-19 Score=111.32 Aligned_cols=73 Identities=36% Similarity=0.606 Sum_probs=67.0
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCC-CccceEEeCCeeeeeHHHHHHHHHhhC
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPI-GYVPALVDGDFVVSDSFAILMYLEEKY 77 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~-~~~P~L~~~~~~~~es~aI~~~L~~~~ 77 (194)
|+||++..||+|++++++|+++|++|+.+.++.. .+.+++.+.||. +++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~---~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG---NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc---cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 6899999999999999999999999999988765 457889999996 999999999999999999999999864
No 34
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.81 E-value=1.4e-19 Score=110.93 Aligned_cols=73 Identities=41% Similarity=0.666 Sum_probs=68.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHH
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~ 74 (194)
++||+++.||+|++++++|+++|++|+.+.+++..++.+.+++.+.||.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999986666678899999999999999999999999999999984
No 35
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.81 E-value=1.5e-19 Score=113.83 Aligned_cols=70 Identities=24% Similarity=0.290 Sum_probs=65.0
Q ss_pred CCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHhhCCCC
Q 029374 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQP 80 (194)
Q Consensus 8 ~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~~~~~~ 80 (194)
..||||+++|++|+++||+|+.+.+++. .++++|+++||.|++|+|+++|.+++||.+|++||+++++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~---~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMK---RKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCC---CCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHccCC
Confidence 4699999999999999999999999987 467899999999999999999999999999999999998754
No 36
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.81 E-value=2.3e-19 Score=109.97 Aligned_cols=73 Identities=40% Similarity=0.513 Sum_probs=67.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHH
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~ 74 (194)
++||++..||++++++++|+++|++|+.+.++...++.+.+++.+.||.|++|+|+++|..++||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 5899999999999999999999999999998875555667899999999999999999999999999999984
No 37
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.80 E-value=2e-19 Score=110.41 Aligned_cols=73 Identities=44% Similarity=0.626 Sum_probs=67.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEE-eCCeeeeeHHHHHHHHH
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLE 74 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~-~~~~~~~es~aI~~~L~ 74 (194)
|+||+++.||+|++++++|+++|++|+.+.++...++.+.+++.+.||.+++|+|+ +||..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 58999999999999999999999999999999866556678899999999999999 58889999999999985
No 38
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.80 E-value=2.9e-19 Score=109.47 Aligned_cols=73 Identities=58% Similarity=0.955 Sum_probs=68.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHH
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~ 74 (194)
|+||++..|++|++++++|+++|++|+.+.+++.+++.+.+++.+.||.+++|+|+++|..++||.||++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999987666678899999999999999999999999999999985
No 39
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.79 E-value=6.3e-19 Score=109.13 Aligned_cols=76 Identities=41% Similarity=0.550 Sum_probs=68.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeC-CeeeeeHHHHHHHHHhhCC
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG-DFVVSDSFAILMYLEEKYP 78 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~-~~~~~es~aI~~~L~~~~~ 78 (194)
|+||++..+ .+++|+++|+++|++|+.+.++..+++.+.+++.+.||.+++|+|+++ |..++||.+|++||+++||
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 589988765 689999999999999999999987766778999999999999999965 8999999999999999875
No 40
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.79 E-value=7.1e-19 Score=108.60 Aligned_cols=76 Identities=46% Similarity=0.710 Sum_probs=69.0
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHhhCC
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYP 78 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~~~~ 78 (194)
|+||++.. ++|++++++|+++|++|+.+.++...++.+.+++.+.||.+++|+|+++|..++||.+|++||+++++
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 58997764 78999999999999999999999876566788999999999999999999999999999999999875
No 41
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.79 E-value=9e-19 Score=107.85 Aligned_cols=72 Identities=29% Similarity=0.448 Sum_probs=66.6
Q ss_pred eecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEe-CCeeeeeHHHHHHHHHh
Q 029374 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVD-GDFVVSDSFAILMYLEE 75 (194)
Q Consensus 3 ~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~-~~~~~~es~aI~~~L~~ 75 (194)
+||++..||+|++++++|+++|++|+.+.++..++ .+.++|.+.||.|++|+|++ +|..++||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKE-NKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccc-cCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 79999999999999999999999999999998644 66889999999999999995 68899999999999975
No 42
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.78 E-value=1.6e-18 Score=105.65 Aligned_cols=69 Identities=30% Similarity=0.501 Sum_probs=63.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEe-CCeeeeeHHHHHHHH
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVD-GDFVVSDSFAILMYL 73 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~-~~~~~~es~aI~~~L 73 (194)
.+||++..||+|+|++++|+++|++|+.+.++... +.+++.+.||.|++|+|++ ||..++||.+|++|+
T Consensus 1 ~~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~---~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 1 PILYSFRRCPYAMRARMALLLAGITVELREVELKN---KPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred CEEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCC---CCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 37999999999999999999999999999998763 4679999999999999996 599999999999997
No 43
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.77 E-value=1.9e-18 Score=106.57 Aligned_cols=74 Identities=50% Similarity=0.745 Sum_probs=65.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCC-CccceEEeC-CeeeeeHHHHHHHHHh
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPI-GYVPALVDG-DFVVSDSFAILMYLEE 75 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~-~~~P~L~~~-~~~~~es~aI~~~L~~ 75 (194)
|+|+++...++|.++|++|+++|++|+.+.+++..++.+.++|.+.||. |++|+|+++ |..++||.||++||++
T Consensus 1 ~~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 1 MTLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 4566666666999999999999999999999998877777999999999 999999988 9999999999999985
No 44
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.77 E-value=1e-18 Score=107.01 Aligned_cols=72 Identities=24% Similarity=0.316 Sum_probs=65.3
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHhh
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~~ 76 (194)
++||++..|++|+++|++|+++|++|+.+.++.. ...+++.+.||.|++|+|++||.+++||.+|++||+++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE---EWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH---HhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 6899999999999999999999999999999863 23457889999999999999999999999999999863
No 45
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.77 E-value=9.8e-19 Score=106.86 Aligned_cols=72 Identities=26% Similarity=0.270 Sum_probs=64.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHh
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~ 75 (194)
++||++..|++|++||++|+++|++|+.+.++.... ..+++.+.||.+++|+|+++|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~--~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEW--PELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHh--hhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 689999999999999999999999999999886532 234588999999999999999999999999999974
No 46
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.77 E-value=1.7e-18 Score=105.47 Aligned_cols=70 Identities=19% Similarity=0.289 Sum_probs=60.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeC-CeeeeeHHHHHHHHHh
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG-DFVVSDSFAILMYLEE 75 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~-~~~~~es~aI~~~L~~ 75 (194)
|+||++..||+|+|+|++|+++|++|+.+.++... .....+.+|.+++|+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~----~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD----EATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc----hHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 68999999999999999999999999998887432 2344678999999999964 8999999999999974
No 47
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.77 E-value=2.2e-18 Score=106.05 Aligned_cols=68 Identities=32% Similarity=0.401 Sum_probs=61.9
Q ss_pred CeeecccC-------CCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHH
Q 029374 1 MLKLFSYW-------RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYL 73 (194)
Q Consensus 1 m~~Ly~~~-------~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L 73 (194)
|++||++. .||+|++++++|+++|++|+.+.++.. +.+|.|++|+|+++|.+++||.+|++||
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~----------~~~p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA----------KRSPKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc----------cCCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 89999988 689999999999999999999877642 5689999999999999999999999999
Q ss_pred HhhCC
Q 029374 74 EEKYP 78 (194)
Q Consensus 74 ~~~~~ 78 (194)
+++|+
T Consensus 71 ~~~~~ 75 (75)
T cd03080 71 EEKYG 75 (75)
T ss_pred HHHcC
Confidence 99874
No 48
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.76 E-value=2.8e-18 Score=109.04 Aligned_cols=71 Identities=34% Similarity=0.431 Sum_probs=64.8
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeC-CeeeeeHHHHHHHHH
Q 029374 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG-DFVVSDSFAILMYLE 74 (194)
Q Consensus 1 m~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~-~~~~~es~aI~~~L~ 74 (194)
|++||+...||+|++++++|+++|++|+.+.++... ..+++.+.||.+++|+|+++ |..++||.+|++||+
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~---~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKD---KPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCC---CcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 689999999999999999999999999999988753 35678999999999999965 899999999999985
No 49
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.75 E-value=5.1e-18 Score=103.94 Aligned_cols=70 Identities=33% Similarity=0.403 Sum_probs=64.0
Q ss_pred eeecccCCCchhHHHHHHHHH--cCCcceEEEccCCCCCCCChhHHhhCCCCccceEE-eCCeeeeeHHHHHHHHH
Q 029374 2 LKLFSYWRSSCSHRVRIGLNL--KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLE 74 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~--~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~-~~~~~~~es~aI~~~L~ 74 (194)
++||++..||+|+++|++|++ +|++|+.+.++.. .+.+++.+.||.+++|+|+ +||..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW---SDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc---cCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 8999999998854 4568899999999999998 68899999999999985
No 50
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.9e-17 Score=113.58 Aligned_cols=175 Identities=18% Similarity=0.200 Sum_probs=121.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEE-eCCeeeeeHHHHHHHHHhhCCCC
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQP 80 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~-~~~~~~~es~aI~~~L~~~~~~~ 80 (194)
|+||-|..||||.|+|++...+|||++......++.+. -..+-...+||+|+ +||..+.||..|.+|+++..+++
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~T----p~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEET----PIRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccC----hhhhhcccccceEEccccccchhhhHHHHHHHHhcCch
Confidence 68999999999999999999999999988887665332 23455678999999 89999999999999999998764
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHH-------------HHH-HhcCcc-------HHHHHHHHHHHHHHHH
Q 029374 81 PLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVK-------------YIE-EKAGAD-------ERDIWAKTHIGKGFAA 139 (194)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~-------~~~~~~~~~~~~~l~~ 139 (194)
-+-.. .+..++.|++.+.......+...+.. ++. ++.... ........++...|+.
T Consensus 77 ~lt~~---~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~ 153 (215)
T COG2999 77 LLTGK---VRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRA 153 (215)
T ss_pred hhccC---cCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHH
Confidence 34322 24556677766665544332222221 111 111111 1234556778888888
Q ss_pred HHHHhhccCCCcccCCCchhhhhHHHhhhhcccc-------cchhhhHHhhcCC
Q 029374 140 LEKLLKDYAGKYATGDEVFLVSFHCFIYVRSKPF-------YNTQSSFQKQGVE 186 (194)
Q Consensus 140 le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~~-------~~l~~w~~~~~~~ 186 (194)
++..+.+ ..=+-| ..+.-|+.+|+.|+.... .++..|..+|.+.
T Consensus 154 l~~Li~~--~s~~n~-~l~~ddi~vFplLRnlt~v~gi~wps~v~dy~~~msek 204 (215)
T COG2999 154 LDKLIVG--PSAVNG-ELSEDDILVFPLLRNLTLVAGIQWPSRVADYRDNMSEK 204 (215)
T ss_pred HHHHhcC--cchhcc-ccchhhhhhhHHhccceecccCCCcHHHHHHHHHHHHh
Confidence 8888876 332344 689999999999998532 3456777777664
No 51
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.74 E-value=1.1e-17 Score=101.43 Aligned_cols=68 Identities=57% Similarity=0.842 Sum_probs=57.9
Q ss_pred CCchhHHHHHHHHHcCCcceEEEccC-CCCCCCChhHHhhCCCCccceEEe-CCeeeeeHHHHHHHHHhh
Q 029374 9 RSSCSHRVRIGLNLKGLEYEYKAVNL-VKGEQFSPDFLKINPIGYVPALVD-GDFVVSDSFAILMYLEEK 76 (194)
Q Consensus 9 ~~p~~~~v~~~L~~~gi~~~~~~v~~-~~~~~~~~~~~~~~p~~~~P~L~~-~~~~~~es~aI~~~L~~~ 76 (194)
.||||+|++++|+++|++|+...+.. .++..+.++|.+.||.|+||+|++ +|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 49999999999999999999988854 233455689999999999999996 889999999999999874
No 52
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.74 E-value=8.5e-18 Score=105.77 Aligned_cols=70 Identities=39% Similarity=0.518 Sum_probs=61.2
Q ss_pred CCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeC-CeeeeeHHHHHHHHHhhCC
Q 029374 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG-DFVVSDSFAILMYLEEKYP 78 (194)
Q Consensus 8 ~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~-~~~~~es~aI~~~L~~~~~ 78 (194)
..||+|+|+|++|+++|++|+.+.++....+...+++ +.||.+++|+|+++ |.+++||.+|++||+++|+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 6799999999999999999999999876544334455 78999999999987 8999999999999999875
No 53
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.74 E-value=1.3e-17 Score=104.21 Aligned_cols=75 Identities=25% Similarity=0.340 Sum_probs=63.7
Q ss_pred eecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCC-ChhHHh-----hCCCCccceEEeCCeeeeeHHHHHHHHHhh
Q 029374 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQF-SPDFLK-----INPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (194)
Q Consensus 3 ~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~-~~~~~~-----~~p~~~~P~L~~~~~~~~es~aI~~~L~~~ 76 (194)
+||++..++.|+++|++|+++|++|+.+.+++..++.. .+++.. .+|.|++|+|++||..++||.||++||+++
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~~ 81 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIARK 81 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhhc
Confidence 78999999999999999999999999999998654432 234432 229999999999999999999999999986
Q ss_pred C
Q 029374 77 Y 77 (194)
Q Consensus 77 ~ 77 (194)
+
T Consensus 82 ~ 82 (82)
T cd03075 82 H 82 (82)
T ss_pred C
Confidence 4
No 54
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.72 E-value=2.1e-16 Score=115.23 Aligned_cols=164 Identities=17% Similarity=0.143 Sum_probs=120.2
Q ss_pred CCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHhhCCCCCCCCCCH
Q 029374 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPPLLPSDL 87 (194)
Q Consensus 8 ~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~~~~~~~l~p~~~ 87 (194)
..||||.++...|...+|||+.+.-.+. ..+..|++|.++-||..+.||.-|...|.+.+.-+..+ ++
T Consensus 59 nLSPfClKvEt~lR~~~IpYE~~~~~~~----------~rSr~G~lPFIELNGe~iaDS~~I~~~L~~hf~~~~~L--~~ 126 (281)
T KOG4244|consen 59 NLSPFCLKVETFLRAYDIPYEIVDCSLK----------RRSRNGTLPFIELNGEHIADSDLIEDRLRKHFKIPDDL--SA 126 (281)
T ss_pred CCChHHHHHHHHHHHhCCCceeccccce----------eeccCCCcceEEeCCeeccccHHHHHHHHHHcCCCCCC--CH
Confidence 4599999999999999999998766542 24578999999999999999999999999998754423 34
Q ss_pred HHHHHHHHHHHHHhcchhhHH------------------------HHHHHHHH-----HHh--------cCccHHHHHHH
Q 029374 88 KRKAINYQAANIVSSSIQPLQ------------------------NLAVVKYI-----EEK--------AGADERDIWAK 130 (194)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~-----~~~--------~~~~~~~~~~~ 130 (194)
.+++..+.....++..+.-.+ .....+.+ ++. .|+=+ .++..
T Consensus 127 e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~IG~f~-~~Ei~ 205 (281)
T KOG4244|consen 127 EQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGAIGDFE-SAEID 205 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhccccCcC-HHHHH
Confidence 556655555444443321110 00011111 110 11112 34477
Q ss_pred HHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhhhcc--------------cccchhhhHHhhcCC
Q 029374 131 THIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYVRSK--------------PFYNTQSSFQKQGVE 186 (194)
Q Consensus 131 ~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~--------------~~~~l~~w~~~~~~~ 186 (194)
+.+.+.|+.++..|++ ++||+||++|-+|+++|+.|... ++|++.++.+||++.
T Consensus 206 ell~rDlr~i~~~Lg~--KkflfGdkit~~DatvFgqLa~v~YP~~~~i~d~le~d~p~l~eYceRIr~~ 273 (281)
T KOG4244|consen 206 ELLHRDLRAISDYLGD--KKFLFGDKITPADATVFGQLAQVYYPFRSHISDLLEGDFPNLLEYCERIRKE 273 (281)
T ss_pred HHHHHHHHHHHHHhCC--CccccCCCCCcceeeehhhhhheeccCCCcHHHHHhhhchHHHHHHHHHHHH
Confidence 8889999999999998 99999999999999999999872 789999999999874
No 55
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.72 E-value=3.4e-17 Score=101.30 Aligned_cols=71 Identities=27% Similarity=0.338 Sum_probs=61.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeC----CeeeeeHHHHHHHHHhhC
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG----DFVVSDSFAILMYLEEKY 77 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~----~~~~~es~aI~~~L~~~~ 77 (194)
++||++..||+|++++++|.++|++|+.+.++... .++ +..+|.+++|+|+++ |.+++||.+|++||++..
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~----~~~-~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS----RKE-IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh----HHH-HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 68999999999999999999999999999887532 223 467999999999954 789999999999999864
No 56
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.69 E-value=1.3e-16 Score=99.01 Aligned_cols=71 Identities=24% Similarity=0.255 Sum_probs=61.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHh-----hCCCCccceEEeCCeeeeeHHHHHHHHHhh
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLK-----INPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~-----~~p~~~~P~L~~~~~~~~es~aI~~~L~~~ 76 (194)
++||++..++.|++++++|++.|++|+.+.++..+ ++.+ ..|.|++|+|++||..++||.||++||+++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~------~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~~ 75 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAE------DLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAGK 75 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHH------HHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHHH
Confidence 58999999999999999999999999999887532 2222 236899999999999999999999999998
Q ss_pred CC
Q 029374 77 YP 78 (194)
Q Consensus 77 ~~ 78 (194)
++
T Consensus 76 ~~ 77 (79)
T cd03077 76 YN 77 (79)
T ss_pred cC
Confidence 76
No 57
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.69 E-value=1.8e-16 Score=96.96 Aligned_cols=68 Identities=38% Similarity=0.450 Sum_probs=61.4
Q ss_pred ccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHH
Q 029374 6 SYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (194)
Q Consensus 6 ~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~ 74 (194)
....|++|++++++|+++|++|+.+.++...+ .+.++|.+.||.|++|+|+++|.+++||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTP-DTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCc-cccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 45789999999999999999999999987653 356899999999999999999999999999999984
No 58
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.66 E-value=5.6e-16 Score=93.64 Aligned_cols=71 Identities=49% Similarity=0.790 Sum_probs=63.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHH
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~ 74 (194)
++||++..||+|++++++|+++|++|+.+.++..... ..++.+.+|.+++|+|+++|..+.||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGE--QEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCC--CHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999998865432 2257889999999999999999999999999984
No 59
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=6.3e-16 Score=113.29 Aligned_cols=176 Identities=21% Similarity=0.241 Sum_probs=127.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcce--EEEccC--CC-CCCC------------------ChhHHhhCCC----Cccc
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYE--YKAVNL--VK-GEQF------------------SPDFLKINPI----GYVP 54 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~--~~~v~~--~~-~~~~------------------~~~~~~~~p~----~~~P 54 (194)
+.||....|||++|..++-+.||++-- +..+++ .. +-.. .+-|....|. -+||
T Consensus 52 YhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvTVP 131 (324)
T COG0435 52 YHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVTVP 131 (324)
T ss_pred EEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCceeEE
Confidence 579999999999999999999998721 222221 11 0000 0112222222 2699
Q ss_pred eEEe--CCeee-eeHHHHHHHHHhhCCC-----CCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHH
Q 029374 55 ALVD--GDFVV-SDSFAILMYLEEKYPQ-----PPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERD 126 (194)
Q Consensus 55 ~L~~--~~~~~-~es~aI~~~L~~~~~~-----~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (194)
+|-| ..+++ .||..|++-+...+++ ..|+|.. -|.+++.+.+++.+.+.+-+ ++ .....++++.
T Consensus 132 VLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~--Lr~eId~~n~~Iy~~vNNGV----Yk--~GFA~tq~aY 203 (324)
T COG0435 132 VLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEA--LRTEIDELNKWIYDTVNNGV----YK--AGFATTQEAY 203 (324)
T ss_pred EEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHH--HHHHHHHHHhhhcccccCce----ee--ecccchHHHH
Confidence 9986 34444 7999999988876653 4577765 48888988888877765532 11 1223456778
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhhhc----------------ccccchhhhHHhhcCCCC
Q 029374 127 IWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYVRS----------------KPFYNTQSSFQKQGVETP 188 (194)
Q Consensus 127 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~----------------~~~~~l~~w~~~~~~~~p 188 (194)
+..-+.+-..|+.+|+.|++ +.||+||++|.||+.+++.|.+ ..+|+|..|+..+.+ .|
T Consensus 204 eea~~~lF~~Ld~lE~~L~~--~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq-~p 278 (324)
T COG0435 204 EEAVKKLFEALDKLEQILSE--RRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQ-LP 278 (324)
T ss_pred HHHHHHHHHHHHHHHHHhhc--CeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhc-Cc
Confidence 88888999999999999999 9999999999999999999977 368999999999988 44
No 60
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.62 E-value=1.7e-15 Score=92.44 Aligned_cols=65 Identities=28% Similarity=0.333 Sum_probs=57.6
Q ss_pred eeecccC-------CCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHH
Q 029374 2 LKLFSYW-------RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (194)
Q Consensus 2 ~~Ly~~~-------~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~ 74 (194)
++||.+. .||+|++++++|+++|++|+.+.++.. ..+|.|++|+|+++|.++.||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~----------~~~p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNP----------WRSPTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCc----------ccCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence 3577666 799999999999999999999988853 16899999999999999999999999998
Q ss_pred hh
Q 029374 75 EK 76 (194)
Q Consensus 75 ~~ 76 (194)
++
T Consensus 71 ~~ 72 (72)
T cd03054 71 KK 72 (72)
T ss_pred hC
Confidence 74
No 61
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.6e-14 Score=105.03 Aligned_cols=179 Identities=20% Similarity=0.172 Sum_probs=124.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCc----ceEEEccCCC-CCCC--------------------------ChhHHhhCCC
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLE----YEYKAVNLVK-GEQF--------------------------SPDFLKINPI 50 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~----~~~~~v~~~~-~~~~--------------------------~~~~~~~~p~ 50 (194)
+-||....|||++|+.+.++.||+. +..+..-..+ +... .+-|...+|.
T Consensus 38 yhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~p~ 117 (319)
T KOG2903|consen 38 YHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIASPN 117 (319)
T ss_pred EEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcCCC
Confidence 4689999999999999999999986 2222220110 0000 0011111222
Q ss_pred ----CccceEEeC--Ceee-eeHHHHHHHHHhhCC---------CCCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 029374 51 ----GYVPALVDG--DFVV-SDSFAILMYLEEKYP---------QPPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVK 114 (194)
Q Consensus 51 ----~~~P~L~~~--~~~~-~es~aI~~~L~~~~~---------~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (194)
-+||+|=|- ..++ .||..|++.+...+. .-.|+|.+ -+++++.+.+|+.+.+.+-+ ++
T Consensus 118 Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~--L~~~Ide~N~wvy~~INNGV----Yk 191 (319)
T KOG2903|consen 118 YTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSS--LRAQIDETNSWVYDKINNGV----YK 191 (319)
T ss_pred CCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHH--HHHHHhhhhceecccccCce----ee
Confidence 269999863 3444 799999999983332 23467765 48889999998877665432 11
Q ss_pred HHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhhhc-----------------ccccchh
Q 029374 115 YIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYVRS-----------------KPFYNTQ 177 (194)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~-----------------~~~~~l~ 177 (194)
.....+++..+..-.++-+.|+.+|+.|+++-+.|++|+++|.||+.|++.+.+ ..+|++.
T Consensus 192 --~GFA~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~ir~~Yp~l~ 269 (319)
T KOG2903|consen 192 --CGFAEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTIRDEYPNLH 269 (319)
T ss_pred --eccccccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhhhccCcHHH
Confidence 122335577788888899999999999999444599999999999999998876 2789999
Q ss_pred hhHHhhcCCCC
Q 029374 178 SSFQKQGVETP 188 (194)
Q Consensus 178 ~w~~~~~~~~p 188 (194)
.|+.++.+-.|
T Consensus 270 ~~lk~iY~~~~ 280 (319)
T KOG2903|consen 270 NWLKNIYWNIP 280 (319)
T ss_pred HHHHHHHhhcc
Confidence 99999887444
No 62
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.55 E-value=4.8e-14 Score=94.36 Aligned_cols=100 Identities=16% Similarity=0.149 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHHHHHHhcchhhHHHHHHHHH-HHHh-------cCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCC
Q 029374 84 PSDLKRKAINYQAANIVSSSIQPLQNLAVVKY-IEEK-------AGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGD 155 (194)
Q Consensus 84 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~ 155 (194)
|.++.+++++++|+.+..+.+.+.+....... .... ..++...+....++.+.|+.+|++|++ ++|++||
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~Gd 79 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAK--KGYFVGD 79 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHcc--CCCCCCC
Confidence 46889999999999999988887654332221 1110 112344566778899999999999987 8999999
Q ss_pred CchhhhhHHHhhhhc--------ccccchhhhHHhhcC
Q 029374 156 EVFLVSFHCFIYVRS--------KPFYNTQSSFQKQGV 185 (194)
Q Consensus 156 ~~t~aD~~l~~~l~~--------~~~~~l~~w~~~~~~ 185 (194)
++|+||+++++.+.+ ..+|++.+|++++.+
T Consensus 80 ~~t~ADi~l~~~~~~~~~~~~~~~~~p~l~~w~~~~~~ 117 (119)
T cd03189 80 KLTAADIMMSFPLEAALARGPLLEKYPNIAAYLERIEA 117 (119)
T ss_pred CCCHHHHHHHHHHHHHHHcCcccccCchHHHHHHHHhc
Confidence 999999999877766 367899999999988
No 63
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=3.1e-12 Score=90.21 Aligned_cols=165 Identities=18% Similarity=0.156 Sum_probs=123.9
Q ss_pred CCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHhhCCC-CCCCCCC
Q 029374 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQ-PPLLPSD 86 (194)
Q Consensus 8 ~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~~~~~-~~l~p~~ 86 (194)
+....|.+|...|...++||.++..+ +.+| ++|.|++|.|..|.+.++|-.+|..+..++.-. .+.. +
T Consensus 32 ~d~ascLAVqtfLrMcnLPf~v~~~~-------Naef--mSP~G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~l--s 100 (257)
T KOG3027|consen 32 PDNASCLAVQTFLRMCNLPFNVRQRA-------NAEF--MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWL--S 100 (257)
T ss_pred ccchhHHHHHHHHHHcCCCceeeecC-------Cccc--cCCCCCCceeeecchhhhhhhHHHHHHHHhccchhhhh--h
Confidence 34678999999999999999987655 3444 468999999999999999999999999998532 1222 4
Q ss_pred HHHHHHHHHHHHHHhcchhhHHHHH--------------------------HHH---------HHHHhcCccHHHHHHHH
Q 029374 87 LKRKAINYQAANIVSSSIQPLQNLA--------------------------VVK---------YIEEKAGADERDIWAKT 131 (194)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~---------~~~~~~~~~~~~~~~~~ 131 (194)
..+++.++..++.+++.+..+--.. +.. .......++...+...+
T Consensus 101 E~qkadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie 180 (257)
T KOG3027|consen 101 EDQKADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIE 180 (257)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHH
Confidence 5678888888877766543211000 000 01112234456788889
Q ss_pred HHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhhhc---------------ccccchhhhHHhhcC
Q 029374 132 HIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYVRS---------------KPFYNTQSSFQKQGV 185 (194)
Q Consensus 132 ~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~---------------~~~~~l~~w~~~~~~ 185 (194)
++.+..+.|+..|+. .+|+.|++||-+|..+|+.+.. .+|+++.+...||.+
T Consensus 181 ~vdkc~~aLsa~L~~--q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~lkkys~LlefcrrIeq 247 (257)
T KOG3027|consen 181 QVDKCCRALSAQLGS--QPYFTGDQPTELDALVFGHLYTILTTRLPNMELANILKKYSNLLEFCRRIEQ 247 (257)
T ss_pred HHHHHHHHHHHHhcC--CCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999999998 9999999999999999998877 267888888888765
No 64
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.46 E-value=5.9e-13 Score=87.69 Aligned_cols=98 Identities=14% Similarity=0.094 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHh
Q 029374 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEEK--AGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFI 166 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~ 166 (194)
+|+++++|+.+..+.+.+.+...+....... ..++...+...+.+.+.|+.+|++|++ ++|++|+++|+||+++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~--~~~l~g~~~t~aDi~~~~ 79 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLAG--RPYLAGDRFTLADIPLGC 79 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhCC--CCcccCCCCCHHHHHHHH
Confidence 4788999999998888887655433322211 122345667888999999999999997 789999999999999987
Q ss_pred hhh-c-------ccccchhhhHHhhcCCCCC
Q 029374 167 YVR-S-------KPFYNTQSSFQKQGVETPI 189 (194)
Q Consensus 167 ~l~-~-------~~~~~l~~w~~~~~~~~p~ 189 (194)
.+. + .++|++.+|++++.+ .|+
T Consensus 80 ~~~~~~~~~~~~~~~p~l~~~~~~~~~-~p~ 109 (110)
T cd03180 80 SAYRWFELPIERPPLPHLERWYARLRA-RPA 109 (110)
T ss_pred HHHHHHHcccccccCchHHHHHHHHHh-CCC
Confidence 773 2 468999999999998 453
No 65
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.46 E-value=3.9e-13 Score=89.63 Aligned_cols=101 Identities=12% Similarity=0.059 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH------hcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchh
Q 029374 86 DLKRKAINYQAANIVSSSIQPLQNLAVVKYIEE------KAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFL 159 (194)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ 159 (194)
|+.+++.+++|+.++...+.+.+...+...... ....+...+....++.+.|..+|+.|++ ++|++||++|+
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~~l~gd~~t~ 78 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAG--SPYVAGDRFTI 78 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcC--CCcccCCCCCH
Confidence 467899999999999888776654433221111 1123455678888999999999999987 78999999999
Q ss_pred hhhHHHhhhhc---------ccccchhhhHHhhcCCCCC
Q 029374 160 VSFHCFIYVRS---------KPFYNTQSSFQKQGVETPI 189 (194)
Q Consensus 160 aD~~l~~~l~~---------~~~~~l~~w~~~~~~~~p~ 189 (194)
|||++++.+.+ ..+|++.+|++++.+ .|+
T Consensus 79 aDi~l~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~-~p~ 116 (117)
T cd03182 79 ADITAFVGLDFAKVVKLRVPEELTHLRAWYDRMAA-RPS 116 (117)
T ss_pred HHHHHHHHhHHHHhcCCCCccccHHHHHHHHHHHh-ccC
Confidence 99999988866 268899999999998 554
No 66
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.46 E-value=5.4e-13 Score=89.54 Aligned_cols=99 Identities=34% Similarity=0.507 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcC--ccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHH
Q 029374 88 KRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAG--ADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCF 165 (194)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~ 165 (194)
.+++++++|+.++.+.+.+..............+ .+...+...+.+.+.|..+|++|++++++|++|+++|+|||+++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~ 81 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLV 81 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHH
Confidence 4689999999999988876543333332222211 12334556677899999999999853357999999999999999
Q ss_pred hhhhc--------ccccchhhhHHhhcCC
Q 029374 166 IYVRS--------KPFYNTQSSFQKQGVE 186 (194)
Q Consensus 166 ~~l~~--------~~~~~l~~w~~~~~~~ 186 (194)
+.+.+ ..+|++.+|++++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 110 (121)
T cd03191 82 PQVYNARRFGVDLSPYPTIARINEACLEL 110 (121)
T ss_pred HHHHHHHHhCCCcccCcHHHHHHHHHHhC
Confidence 88765 3679999999999883
No 67
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.44 E-value=4e-13 Score=89.39 Aligned_cols=98 Identities=14% Similarity=0.096 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHH
Q 029374 85 SDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHC 164 (194)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l 164 (194)
.++..++.+++|+.+....+.+.+....+... ... +..+...+.+.+.+..+|++|++ ++|++|+++|+||+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~i~~~l~~le~~L~~--~~yl~Gd~~tlADi~l 75 (115)
T cd03196 2 QDPAALKEMLALIAENDNEFKHHLDRYKYADR---YPE-ESEEEYRQQAEAFLKDLEARLQQ--HSYLLGDKPSLADWAI 75 (115)
T ss_pred CchHHHHHHHHHHHHcchhhHHHHHhccchhh---cCc-ccHHHHHHHHHHHHHHHHHHHcc--CCccCCCCccHHHHHH
Confidence 37889999999999999998877654433321 111 24667788999999999999998 7999999999999999
Q ss_pred Hhhhhc-----------ccccchhhhHHhhcCCCCC
Q 029374 165 FIYVRS-----------KPFYNTQSSFQKQGVETPI 189 (194)
Q Consensus 165 ~~~l~~-----------~~~~~l~~w~~~~~~~~p~ 189 (194)
++.+.+ ..+|++.+|++++.+ .|+
T Consensus 76 ~~~l~~~~~~~~~~~~~~~~P~L~~w~~r~~~-rpa 110 (115)
T cd03196 76 FPFVRQFAHVDPKWFDQSPYPRLRRWLNGFLA-SPL 110 (115)
T ss_pred HHHHHHHHHhhhcccCcccCHHHHHHHHHHHc-ChH
Confidence 876532 467999999999998 453
No 68
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.43 E-value=7.1e-13 Score=80.26 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=50.1
Q ss_pred CCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHhh
Q 029374 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (194)
Q Consensus 8 ~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~~ 76 (194)
..+++|.+++++|++.|+||+.+.... .. ..+|.|++|+|++||.+++||.+|+.||.++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~-------~~--~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRAN-------AE--FMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCC-------cc--ccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 578999999999999999999884321 11 1457799999999999999999999999864
No 69
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.42 E-value=9.8e-13 Score=86.36 Aligned_cols=92 Identities=12% Similarity=0.060 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhh
Q 029374 88 KRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIY 167 (194)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~ 167 (194)
.+|++++.|+.++.+.+.+.+..... . .++..+...+.+.+.|..+|++|++ ++|++|+++|+|||++++.
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~~~~~ 72 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEK----G---RKKEAEKARKELRESLLALAPVFAH--KPYFMSEEFSLVDCALAPL 72 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh----C---cHHHHHHHHHHHHHHHHHHHHHHcC--CCcccCCCCcHHHHHHHHH
Confidence 46899999999999887776532221 1 1355667888999999999999987 8999999999999999988
Q ss_pred hhc---------ccccchhhhHHhhcCCCCC
Q 029374 168 VRS---------KPFYNTQSSFQKQGVETPI 189 (194)
Q Consensus 168 l~~---------~~~~~l~~w~~~~~~~~p~ 189 (194)
+.+ ..+|++.+|++++.+ .|+
T Consensus 73 ~~~~~~~~~~~~~~~p~l~~w~~~~~~-rpa 102 (107)
T cd03186 73 LWRLPALGIELPKQAKPLKDYMERVFA-RDS 102 (107)
T ss_pred HHHHHHcCCCCcccchHHHHHHHHHHC-CHH
Confidence 753 146899999999998 453
No 70
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.42 E-value=5e-13 Score=88.54 Aligned_cols=97 Identities=16% Similarity=0.127 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhh
Q 029374 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYV 168 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l 168 (194)
+++.+++|+.|....+.+.+..............+...+....++.+.++.+|+.|++ ++|++|+++|+|||++++.+
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~l~~~~ 78 (113)
T cd03178 1 ERYEVLQWLFFQMGGLGPMFGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVLDKRLAG--RDYLAGDEYSIADIAIFPWV 78 (113)
T ss_pred ChHHHHHHHHHHHccCCCcchHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHcc--CCcccCCCCCeeeeeHHHHH
Confidence 3688999999999998876543322211112223455677889999999999999987 89999999999999998888
Q ss_pred hc---------ccccchhhhHHhhcCCCC
Q 029374 169 RS---------KPFYNTQSSFQKQGVETP 188 (194)
Q Consensus 169 ~~---------~~~~~l~~w~~~~~~~~p 188 (194)
.+ ..+|++.+|++++.+ .|
T Consensus 79 ~~~~~~~~~~~~~~p~l~~w~~~~~~-~p 106 (113)
T cd03178 79 RRLEWIGIDDLDDFPNVKRWLDRIAA-RP 106 (113)
T ss_pred HHHHhccccchhhchHHHHHHHHHhh-CH
Confidence 66 257999999999998 45
No 71
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.40 E-value=4.8e-13 Score=88.67 Aligned_cols=96 Identities=18% Similarity=0.179 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHh
Q 029374 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEE--KAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFI 166 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~ 166 (194)
+|+.+++|+.+..+.+.+.+.......... ....+...+...+.+.+.+..+|+.|++ ++|++|+++|+|||++++
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~--~~~l~G~~~t~aDi~~~~ 79 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLAG--GPYLLGDRFSVADAYLFV 79 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhcC--CCeeeCCCcchHHHHHHH
Confidence 478999999999998888764333221100 0111344667788999999999999986 889999999999999998
Q ss_pred hhhc--------ccccchhhhHHhhcCC
Q 029374 167 YVRS--------KPFYNTQSSFQKQGVE 186 (194)
Q Consensus 167 ~l~~--------~~~~~l~~w~~~~~~~ 186 (194)
.+.+ ..+|++.+|+++|.+.
T Consensus 80 ~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 107 (114)
T cd03188 80 VLRWAPGVGLDLSDWPNLAAYLARVAAR 107 (114)
T ss_pred HHHHHhhcCCChhhChHHHHHHHHHHhC
Confidence 8765 2578999999999883
No 72
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.38 E-value=1.4e-12 Score=83.94 Aligned_cols=90 Identities=10% Similarity=-0.007 Sum_probs=71.2
Q ss_pred HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCC
Q 029374 70 LMYLEEKYPQPPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAG 149 (194)
Q Consensus 70 ~~~L~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~ 149 (194)
++||++. ..++|.++.+.+.++.|++.....+. ....+.+.+.++.+|++|++ +
T Consensus 1 ~r~~~~~---~~~~~~~~~~~~~vd~~~d~~~~~l~---------------------~~~~~~~~~~l~~le~~L~~--~ 54 (96)
T cd03200 1 ARFLYRL---LGPAPNAPNAATNIDSWVDTAIFQLA---------------------EGSSKEKAAVLRALNSALGR--S 54 (96)
T ss_pred CchHHHH---hcccCCCchHHHHHHHHHHHHHHHHh---------------------cCCHHHHHHHHHHHHHHHcC--C
Confidence 3688887 35999999999999999996542221 01223455788889999988 8
Q ss_pred CcccCCCchhhhhHHHhhhhcc-----cccchhhhHHhhcC
Q 029374 150 KYATGDEVFLVSFHCFIYVRSK-----PFYNTQSSFQKQGV 185 (194)
Q Consensus 150 ~~l~G~~~t~aD~~l~~~l~~~-----~~~~l~~w~~~~~~ 185 (194)
+|++|+++|+|||++++.+.+. .+|++.+|+++|.+
T Consensus 55 ~fl~Gd~~tiADi~l~~~l~~~~~~~~~~p~l~~w~~r~~~ 95 (96)
T cd03200 55 PWLVGSEFTVADIVSWCALLQTGLASAAPANVQRWLKSCEN 95 (96)
T ss_pred CccCCCCCCHHHHHHHHHHHHcccccccChHHHHHHHHHHh
Confidence 9999999999999999888763 57999999999975
No 73
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.38 E-value=2.2e-12 Score=87.07 Aligned_cols=90 Identities=13% Similarity=0.032 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhh
Q 029374 88 KRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIY 167 (194)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~ 167 (194)
.++++++.|+.+..+.+.+....... . .+...+...+.+.+.++.+|++|++ ++|++|+++|+|||++++.
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~ADi~l~~~ 72 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLA----A---KGEEREKAKEEALEALKVLEEELGG--KPFFGGDTIGYVDIALGSF 72 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHc----c---chHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCcchHHHHHHHH
Confidence 46899999999998888776543321 1 1345566788899999999999987 7999999999999999887
Q ss_pred hhc---------------ccccchhhhHHhhcCC
Q 029374 168 VRS---------------KPFYNTQSSFQKQGVE 186 (194)
Q Consensus 168 l~~---------------~~~~~l~~w~~~~~~~ 186 (194)
+.+ ..+|++.+|++++.+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 106 (126)
T cd03185 73 LGWFRAYEEVGGVKLLDEEKTPLLAAWAERFLEL 106 (126)
T ss_pred HHHHHHHHHHcCccccCcccCchHHHHHHHHHhc
Confidence 655 2368999999999983
No 74
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.38 E-value=3.7e-12 Score=84.95 Aligned_cols=97 Identities=15% Similarity=0.188 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHH-HHH---hcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHH
Q 029374 89 RKAINYQAANIVSSSIQPLQNLAVVKY-IEE---KAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHC 164 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l 164 (194)
+|+.+.+|+.+..+.+.+.+....... ... ...++...+...+.+.+.++.+|++|++ ++|++|+++|+|||++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~l 79 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSK--SKYLAGDSFTLADLSH 79 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHccc--CcccCCCCccHHHHHH
Confidence 478899999998888877654432211 111 1223455666788999999999999987 8999999999999999
Q ss_pred Hhhhhc----------ccccchhhhHHhhcCCCC
Q 029374 165 FIYVRS----------KPFYNTQSSFQKQGVETP 188 (194)
Q Consensus 165 ~~~l~~----------~~~~~l~~w~~~~~~~~p 188 (194)
++++.+ ..+|++.+|++++.+ .|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~-~p 112 (118)
T cd03187 80 LPYLQYLMATPFAKLFDSRPHVKAWWEDISA-RP 112 (118)
T ss_pred HHHHHHHHHccchhhhhcCchHHHHHHHHHh-CH
Confidence 877644 257999999999998 45
No 75
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.38 E-value=1.7e-12 Score=87.33 Aligned_cols=95 Identities=13% Similarity=0.073 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhhh
Q 029374 90 KAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYVR 169 (194)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~ 169 (194)
++.++.|+.++.+.+.+.+...+.........+....+...+.+.+.|+.+|+.|++ ++|++|+++|+||+++++.+.
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~--~~~l~G~~~siaDi~l~~~~~ 79 (123)
T cd03181 2 EAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLLK--RTYLVGERLTLADIFVAGALL 79 (123)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHcc--CceeccCCccHHHHHHHHHHH
Confidence 678999999999988887665444332222233456778889999999999999997 789999999999999998776
Q ss_pred c-----------ccccchhhhHHhhcCC
Q 029374 170 S-----------KPFYNTQSSFQKQGVE 186 (194)
Q Consensus 170 ~-----------~~~~~l~~w~~~~~~~ 186 (194)
+ ..+|++.+|++++.+.
T Consensus 80 ~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 107 (123)
T cd03181 80 LGFTYVFDKEWRAKYPNVTRWFNTVVNQ 107 (123)
T ss_pred HHHHHHcCHHHHHhChHHHHHHHHHHcC
Confidence 5 2579999999999873
No 76
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.37 E-value=3.4e-12 Score=88.07 Aligned_cols=91 Identities=15% Similarity=0.079 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhh
Q 029374 88 KRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIY 167 (194)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~ 167 (194)
+.++.++.|++|..+.+.+.... ... ..+++..+...+.+.+.|+.+|++|++ ++|++|+++|+||+++++.
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~l~~~l~~LE~~L~~--~~yl~Gd~~TlADi~l~~~ 74 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYK----AGF--ATTQEAYDEAVDELFEALDRLEELLSD--RRYLLGDRLTEADIRLFTT 74 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHH----Hhh--ccCHHHHHHHHHHHHHHHHHHHHHHcc--CCeeeCCCccHHHHHHHHH
Confidence 35788999999999887765321 111 234566778888999999999999987 8999999999999999877
Q ss_pred hhc----------------ccccchhhhHHhhcCC
Q 029374 168 VRS----------------KPFYNTQSSFQKQGVE 186 (194)
Q Consensus 168 l~~----------------~~~~~l~~w~~~~~~~ 186 (194)
+.+ ..+|++.+|+++|.+.
T Consensus 75 l~~~~~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~ 109 (142)
T cd03190 75 LIRFDAVYVQHFKCNLKRIRDYPNLWNYLRRLYQN 109 (142)
T ss_pred HHHHHHHhhhhcccccchhhhCchHHHHHHHHhcC
Confidence 642 2589999999999984
No 77
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.37 E-value=3.8e-12 Score=85.04 Aligned_cols=93 Identities=15% Similarity=0.183 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhh
Q 029374 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYV 168 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l 168 (194)
+++++.+|+.+..+.+.+........... ......+...+.+.+.|+.+|++|++ ++|++|+++|+||+++++.+
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~s~aDi~l~~~~ 76 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILF---GGAEPPEEKLDKLEEALDFLETFLEG--SDYVAGDQLTIADLSLVATV 76 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHHHHHHcc--CCeeCCCCcCHHHHHHHHHH
Confidence 47889999999988888766444333221 12234567778899999999999987 78999999999999999877
Q ss_pred hc---------ccccchhhhHHhhcCC
Q 029374 169 RS---------KPFYNTQSSFQKQGVE 186 (194)
Q Consensus 169 ~~---------~~~~~l~~w~~~~~~~ 186 (194)
.+ ..+|++.+|+++|.+.
T Consensus 77 ~~~~~~~~~~~~~~p~l~~w~~~~~~~ 103 (118)
T cd03177 77 STLEALLPLDLSKYPNVRAWLERLKAL 103 (118)
T ss_pred HHHHHhcCCChhhCchHHHHHHHHHcc
Confidence 54 2578999999999994
No 78
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.32 E-value=1.5e-12 Score=85.05 Aligned_cols=94 Identities=12% Similarity=0.077 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHH--HHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHh
Q 029374 89 RKAINYQAANIVSSSIQPLQNLAVVKY--IEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFI 166 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~ 166 (194)
+|+++++|+.+..+.+.+......... ......+++..+...+++.+.++.+|+.|++ ++|++|+++|+||+++++
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~g~~~slaDi~~~~ 79 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAG--RDFLVGDALTIADIALAA 79 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHcc--CccccCCCCCHHHHHHHH
Confidence 478899999998888776543221111 1123334566778889999999999999976 789999999999999998
Q ss_pred hhhcc--------cccchhhhHHhhc
Q 029374 167 YVRSK--------PFYNTQSSFQKQG 184 (194)
Q Consensus 167 ~l~~~--------~~~~l~~w~~~~~ 184 (194)
.+.+. ++|++.+|+++++
T Consensus 80 ~~~~~~~~~~~~~~~p~l~~~~~~~~ 105 (105)
T cd03179 80 YTHVADEGGFDLADYPAIRAWLARIE 105 (105)
T ss_pred HHHhccccCCChHhCccHHHHHHhhC
Confidence 88772 5789999999874
No 79
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.29 E-value=7.9e-12 Score=81.04 Aligned_cols=90 Identities=12% Similarity=0.077 Sum_probs=66.3
Q ss_pred HHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhhhc---
Q 029374 94 YQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYVRS--- 170 (194)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~--- 170 (194)
.+|+.+..+.+.+......+...... ....+...+++.+.++.+|++|++ ++|++|+++|+||+++++.+.+
T Consensus 2 ~~w~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~~~~~~~~~~~ 76 (100)
T cd03206 2 QRWLSVAAGEIANGPAAARLITLFGA---PLDKETAIARAHRLLRLLEEHLAG--RDWLAGDRPTIADVAVYPYVALAPE 76 (100)
T ss_pred ceehhhhhhhcccchhHHHHHHHhCC---HhHHHHHHHHHHHHHHHHHHHHcc--CCccCCCCCCHHHHHHHHHHHHHhc
Confidence 45677777777554332222221111 124566788999999999999998 7899999999999999888855
Q ss_pred -----ccccchhhhHHhhcCCCCC
Q 029374 171 -----KPFYNTQSSFQKQGVETPI 189 (194)
Q Consensus 171 -----~~~~~l~~w~~~~~~~~p~ 189 (194)
..+|++.+|++++.+ .|+
T Consensus 77 ~~~~~~~~p~l~~~~~~~~~-~p~ 99 (100)
T cd03206 77 GGVDLEDYPAIRRWLARIEA-LPG 99 (100)
T ss_pred cCCChhhCcHHHHHHHHHHh-CcC
Confidence 368999999999988 453
No 80
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.29 E-value=1.3e-11 Score=83.38 Aligned_cols=96 Identities=9% Similarity=0.030 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHH-----HHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHH
Q 029374 90 KAINYQAANIVSSSIQPLQNLAVVKYI-----EEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHC 164 (194)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l 164 (194)
++++++|+.|..+.+.+.+........ ......+...+...+.+.+.+..+|+++.+ +++|++||++|+||+++
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-~~~~l~Gd~~t~ADi~l 80 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLK-DKPFLAGDEISIADLSA 80 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhc-CCCcccCCCCCHHHHHH
Confidence 566788988888777765433222111 111223456677888999999999997543 27899999999999998
Q ss_pred Hhhhhc---------ccccchhhhHHhhcCC
Q 029374 165 FIYVRS---------KPFYNTQSSFQKQGVE 186 (194)
Q Consensus 165 ~~~l~~---------~~~~~l~~w~~~~~~~ 186 (194)
++.+.+ ..+|++.+|++++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 111 (126)
T cd03183 81 VCEIMQPEAAGYDVFEGRPKLAAWRKRVKEA 111 (126)
T ss_pred HHHHHHHHhcCCcccccCchHHHHHHHHHHh
Confidence 887644 3589999999999984
No 81
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.28 E-value=1.7e-11 Score=82.69 Aligned_cols=89 Identities=13% Similarity=0.145 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhh
Q 029374 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYV 168 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l 168 (194)
+|++.+.|+++++..+.+.. ..... ++..+...+.+.+.|..+|+.|++.+++|++|+++|+||+++++.+
T Consensus 2 ~ra~~r~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~ 72 (124)
T cd03184 2 EKAQQKLLLERFSKVVSAFY-----KLLGA----PSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWF 72 (124)
T ss_pred hHHHHHHHHHHHhhhhHHHH-----HHHhc----cccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHH
Confidence 47888999999874444332 11111 3445677888999999999999864579999999999999998877
Q ss_pred hc--------------ccccchhhhHHhhcCC
Q 029374 169 RS--------------KPFYNTQSSFQKQGVE 186 (194)
Q Consensus 169 ~~--------------~~~~~l~~w~~~~~~~ 186 (194)
.+ ..+|++.+|+++|.+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~p~l~~w~~r~~~~ 104 (124)
T cd03184 73 ERLEALKLLLGYEFPLDRFPKLKKWMDAMKED 104 (124)
T ss_pred HHHHHHHhhccccCCcccChHHHHHHHHhccC
Confidence 54 3579999999999984
No 82
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.27 E-value=1e-11 Score=79.58 Aligned_cols=61 Identities=21% Similarity=0.297 Sum_probs=55.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhhhc----------ccccchhhhHHhhcC
Q 029374 123 DERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYVRS----------KPFYNTQSSFQKQGV 185 (194)
Q Consensus 123 ~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~----------~~~~~l~~w~~~~~~ 185 (194)
++..+...+.+.+.|+.+|+.|++ ++|++|+++|+||+++++.+.+ .++|++.+|++++.+
T Consensus 23 ~~~~~~~~~~~~~~l~~le~~l~~--~~~l~G~~~t~ADi~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~ 93 (95)
T PF00043_consen 23 EEMVEEARAKVPRYLEVLEKRLKG--GPYLVGDKLTIADIALFPMLDWLERLGPDFLFEKFPKLKKWYERMFA 93 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--SSSSSBSS-CHHHHHHHHHHHHHHHHTTTTTHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC--CCeeeccCCchhHHHHHHHHHHHHHhCCCcccccCHHHHHHHHHHHc
Confidence 356788889999999999999996 9999999999999999999988 479999999999988
No 83
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.25 E-value=2.1e-11 Score=73.50 Aligned_cols=57 Identities=19% Similarity=0.311 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhhhc-----------ccccchhhhHHh
Q 029374 124 ERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYVRS-----------KPFYNTQSSFQK 182 (194)
Q Consensus 124 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~-----------~~~~~l~~w~~~ 182 (194)
...+...+.+.+.|+.+|++|++ ++|++|++||+||+++++.+.+ ..+|++.+|++|
T Consensus 2 ~~~~~~~~~~~~~l~~le~~L~~--~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 2 AAVERARAQLEAALDALEDHLAD--GPFLFGDRPSLADIALAPFLWRLRFVGPDFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--SSBTTBSS--HHHHHHHHHHHHHHHCTHTCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--CCCCCCCCCCHHHHHHHHHHHHHHHhCcCcCccccCHHHHHHHhC
Confidence 35677889999999999999998 7799999999999999999988 367888888875
No 84
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.23 E-value=4.5e-11 Score=74.05 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=60.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHH
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~ 74 (194)
++||+.++||+|.+++.+|+..|++|+.+.++-.. ...++...++..++|++..||..+.++..|.+||+
T Consensus 10 V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~---~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 10 VVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDA---RGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred EEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCCh---HHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 78999999999999999999999999998876432 23456667788999999999999999999999984
No 85
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1.8e-09 Score=81.24 Aligned_cols=164 Identities=18% Similarity=0.167 Sum_probs=119.5
Q ss_pred CchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEE-eCCeeeeeHHHHHHHHHhhCCCCCCCCC-CH
Q 029374 10 SSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQPPLLPS-DL 87 (194)
Q Consensus 10 ~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~-~~~~~~~es~aI~~~L~~~~~~~~l~p~-~~ 87 (194)
++-|.++.+.+...+-|.++...+.. + .+|.|++|+|+ ++|..+..-.-|..+|.+...+-.+-+. ..
T Consensus 17 d~~sL~~l~y~kl~~~~l~v~~ssN~-------~---~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~ 86 (313)
T KOG3028|consen 17 DPDSLAALIYLKLAGAPLKVVVSSNP-------W---RSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSA 86 (313)
T ss_pred ChhHHHHHHHHHHhCCCceeEeecCC-------C---CCCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHH
Confidence 88999999999999977776655532 1 35889999999 5679999999999999985322222222 25
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHH-----------------------------------HHHHhcC-ccHHHHHHHH
Q 029374 88 KRKAINYQAANIVSSSIQPLQNLAVVK-----------------------------------YIEEKAG-ADERDIWAKT 131 (194)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~-~~~~~~~~~~ 131 (194)
.+.+....+++++...+.++....++- ...-..+ ..+..++...
T Consensus 87 kq~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~ 166 (313)
T KOG3028|consen 87 KQLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYK 166 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHH
Confidence 677888889888888877755332221 0001111 1234566677
Q ss_pred HHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhhhc---------------ccccchhhhHHhhcC
Q 029374 132 HIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYVRS---------------KPFYNTQSSFQKQGV 185 (194)
Q Consensus 132 ~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~---------------~~~~~l~~w~~~~~~ 185 (194)
...+++..+++.|+. ++|++||+||--|+.++..+.. ...+|+.++.++++.
T Consensus 167 ~Aska~~~LS~~Lgs--~kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~l~~~~NL~~~~~~i~s 233 (313)
T KOG3028|consen 167 DASKALNLLSTLLGS--KKFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVHLLAHKNLVRYVERIRS 233 (313)
T ss_pred HHHHHHHHHHHHhcC--ceEeeCCCCchHHHHHHHHHHHHHhccCCchhHHHHHHhcchHHHHHHHHHH
Confidence 788899999999998 9999999999999999998877 146777787777764
No 86
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.21 E-value=9.1e-12 Score=80.63 Aligned_cols=62 Identities=21% Similarity=0.354 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhhhc-------ccccchhhhHHhhcC
Q 029374 124 ERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYVRS-------KPFYNTQSSFQKQGV 185 (194)
Q Consensus 124 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~-------~~~~~l~~w~~~~~~ 185 (194)
...+...+.+.+.+..+|++|++++++|++|++||+||+++++.+.. ..+|+|.+|++||++
T Consensus 31 ~~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~~~~~~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 31 ASGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLRWADFPKDYPNLVRWYERIEE 99 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHHCCHHTTTCHHHHHHHHHHHT
T ss_pred hhHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHhhcccccccHHHHHHHHhhcC
Confidence 45677888999999999999999555599999999999999998832 278999999999864
No 87
>PRK10638 glutaredoxin 3; Provisional
Probab=99.20 E-value=7.1e-11 Score=73.89 Aligned_cols=71 Identities=13% Similarity=0.151 Sum_probs=61.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHH
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~ 74 (194)
+++|+.+.||||++++.+|+++|++|+.+.++... ....++.+.++.+++|++..||..+.+...+..+-.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~--~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDA--AKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCH--HHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHH
Confidence 89999999999999999999999999999887442 234677889999999999999999999888776543
No 88
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.17 E-value=1.5e-10 Score=78.19 Aligned_cols=62 Identities=13% Similarity=0.194 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc-CCCcccCCCchhhhhHHHhhhhc---------ccccchhhhHHhhcCC
Q 029374 125 RDIWAKTHIGKGFAALEKLLKDY-AGKYATGDEVFLVSFHCFIYVRS---------KPFYNTQSSFQKQGVE 186 (194)
Q Consensus 125 ~~~~~~~~~~~~l~~le~~L~~~-~~~~l~G~~~t~aD~~l~~~l~~---------~~~~~l~~w~~~~~~~ 186 (194)
..+...+.+.+.|..||+.|+++ +++|++|+++|+||+++++.+.+ ..+|++.+|++++.+.
T Consensus 32 ~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~~~~~~~~~~P~l~~~~~rv~~~ 103 (126)
T cd03210 32 GKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLVLAPGCLDAFPLLKAFVERLSAR 103 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHHhChHhhhcChHHHHHHHHHHhC
Confidence 34556677899999999999864 46899999999999999988755 3679999999999983
No 89
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.15 E-value=2e-10 Score=69.88 Aligned_cols=58 Identities=22% Similarity=0.230 Sum_probs=49.7
Q ss_pred CCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHhh
Q 029374 9 RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (194)
Q Consensus 9 ~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~~ 76 (194)
.||+|.++.+.|+..|++|+++..... ..+|.|++|+|+++|..+.||..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~n~----------~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSNNP----------WRSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecCCC----------CCCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 379999999999999999988744411 2358999999999999999999999999875
No 90
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.15 E-value=2.5e-11 Score=79.04 Aligned_cols=61 Identities=13% Similarity=0.007 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhhhc-------ccccchhhhHHhhcCC
Q 029374 124 ERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYVRS-------KPFYNTQSSFQKQGVE 186 (194)
Q Consensus 124 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~-------~~~~~l~~w~~~~~~~ 186 (194)
+..+...+++.+.++.+|++|++ ++|++|+++|+|||++++.+.+ ..+|++.+|++++.+.
T Consensus 26 ~~~~~~~~~~~~~l~~le~~l~~--~~~l~g~~~t~aDi~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 93 (103)
T cd03207 26 PARMAGFGSYDDVLAALEQALAK--GPYLLGERFTAADVLVGSPLGWGLQFGLLPERPAFDAYIARITDR 93 (103)
T ss_pred chhhhhhhhHHHHHHHHHHHHcc--CCcccCCccCHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHcC
Confidence 34566678899999999999997 7899999999999999987766 3679999999999983
No 91
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.14 E-value=2.3e-10 Score=78.45 Aligned_cols=60 Identities=15% Similarity=0.157 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhhhc---------ccccchhhhHHhhcCC
Q 029374 127 IWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYVRS---------KPFYNTQSSFQKQGVE 186 (194)
Q Consensus 127 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~---------~~~~~l~~w~~~~~~~ 186 (194)
....+.+.+.|+.||++|++++++|++|+++|+||+++++.+.+ ..+|++.+|++++.+.
T Consensus 38 ~~~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~~~~~~~~~l~~~P~l~~~~~rv~~~ 106 (137)
T cd03208 38 LIKEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILMVEELDPSLLSDFPLLQAFKTRISNL 106 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHHHHHhchhhhccChHHHHHHHHHHcC
Confidence 33445678999999999984447899999999999999988866 2579999999999883
No 92
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.14 E-value=3.2e-10 Score=68.92 Aligned_cols=71 Identities=15% Similarity=0.165 Sum_probs=60.1
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHH
Q 029374 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (194)
Q Consensus 1 m~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~ 74 (194)
+++||+...||+|.+++.+|+..|++|+.+.++... ....+.......++|++..||..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~---~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDI---TGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCCh---hHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 478999999999999999999999999999887442 22344555677899999999999999999999974
No 93
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.13 E-value=7.3e-11 Score=75.97 Aligned_cols=88 Identities=15% Similarity=0.151 Sum_probs=62.4
Q ss_pred HHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhhhcc--
Q 029374 94 YQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYVRSK-- 171 (194)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~-- 171 (194)
+.|++++.+.+.+................++..+...+.+.+.++.+|++|++ ++|++|+++|+||+++++.+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~~~~~g~~~t~aDi~~~~~l~~~~~ 79 (100)
T cd00299 2 RAWEEWADTTLEPAARRLLLLAFVGPEVDEAALEEAREELAAALAALEKLLAG--RPYLAGDRFSLADIALAPVLARLDL 79 (100)
T ss_pred hHHHHHHHhhcCCcccceeeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHcc--CCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 45666666655544332222111110123456777888999999999999987 88999999999999999999772
Q ss_pred ---------cccchhhhHHhh
Q 029374 172 ---------PFYNTQSSFQKQ 183 (194)
Q Consensus 172 ---------~~~~l~~w~~~~ 183 (194)
.+|++.+|+++|
T Consensus 80 ~~~~~~~~~~~p~l~~~~~~~ 100 (100)
T cd00299 80 LGPLLGLLDEYPRLAAWYDRL 100 (100)
T ss_pred hhhhhhhhccCccHHHHHHhC
Confidence 467888888775
No 94
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.13 E-value=2.3e-10 Score=77.48 Aligned_cols=64 Identities=13% Similarity=0.105 Sum_probs=54.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhc--------------cCCCcccCCCchhhhhHHHhhhhc--------------cccc
Q 029374 123 DERDIWAKTHIGKGFAALEKLLKD--------------YAGKYATGDEVFLVSFHCFIYVRS--------------KPFY 174 (194)
Q Consensus 123 ~~~~~~~~~~~~~~l~~le~~L~~--------------~~~~~l~G~~~t~aD~~l~~~l~~--------------~~~~ 174 (194)
.+..+...+.+.+.|..||.+|++ .+++|++|+++|+|||.+++.+.+ ..+|
T Consensus 24 ~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~~~~~~~g~~i~~~~P 103 (134)
T cd03198 24 PALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFEIPADLT 103 (134)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCccccCH
Confidence 355677888999999999999986 347899999999999999988762 4689
Q ss_pred chhhhHHhhcCC
Q 029374 175 NTQSSFQKQGVE 186 (194)
Q Consensus 175 ~l~~w~~~~~~~ 186 (194)
++.+|+++|.+.
T Consensus 104 ~L~aw~~ri~aR 115 (134)
T cd03198 104 GLWRYLKNAYQR 115 (134)
T ss_pred HHHHHHHHHHCC
Confidence 999999999984
No 95
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.12 E-value=3.2e-10 Score=76.05 Aligned_cols=89 Identities=10% Similarity=0.084 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhh
Q 029374 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYV 168 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l 168 (194)
+++.++.+.+.+.+....... ... . ...+...+...+.+.+.+..||++|++ ++|++|+++|+||+++++.+
T Consensus 2 e~~~id~~~~~~~d~~~~~~~-~~~----~-~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~T~aDi~l~~~~ 73 (121)
T cd03209 2 ERIRVDMLEQQAMDLRMGLAR-ICY----S-PDFEKLKPDYLAKLPDKLKLFSDFLGD--RPWFAGDKITYVDFLLYEAL 73 (121)
T ss_pred chHHHHHHHHHHHHHHHHHHH-hhc----C-cchHHHHHHHHHHHHHHHHHHHHHhCC--CCCcCCCCccHHHHHHHHHH
Confidence 356666666665543322111 111 0 111244566778899999999999987 78999999999999998887
Q ss_pred hc---------ccccchhhhHHhhcC
Q 029374 169 RS---------KPFYNTQSSFQKQGV 185 (194)
Q Consensus 169 ~~---------~~~~~l~~w~~~~~~ 185 (194)
.+ ..+|++.+|++++.+
T Consensus 74 ~~~~~~~~~~~~~~P~l~~~~~rv~~ 99 (121)
T cd03209 74 DQHRIFEPDCLDAFPNLKDFLERFEA 99 (121)
T ss_pred HHHHHhCccccccChHHHHHHHHHHH
Confidence 66 357999999999987
No 96
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.11 E-value=2e-10 Score=75.42 Aligned_cols=68 Identities=12% Similarity=-0.003 Sum_probs=56.5
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHhhccC--------CCcccCCCchhhhhHHHhhhhcc-------------cccchhhh
Q 029374 121 GADERDIWAKTHIGKGFAALEKLLKDYA--------GKYATGDEVFLVSFHCFIYVRSK-------------PFYNTQSS 179 (194)
Q Consensus 121 ~~~~~~~~~~~~~~~~l~~le~~L~~~~--------~~~l~G~~~t~aD~~l~~~l~~~-------------~~~~l~~w 179 (194)
.+.+..+.....+.+.|+.+|++|.++. ++|++|+++|+|||++++.+.+. .+|++.+|
T Consensus 22 ~~~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~P~l~~w 101 (111)
T cd03204 22 DNVEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFLGLSRRYWGNGKRPNLEAY 101 (111)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHcCccccccccccChHHHHH
Confidence 3456678888999999999999998621 26999999999999999888651 47999999
Q ss_pred HHhhcCCCCC
Q 029374 180 FQKQGVETPI 189 (194)
Q Consensus 180 ~~~~~~~~p~ 189 (194)
++++.+ +|+
T Consensus 102 ~~rv~a-Rps 110 (111)
T cd03204 102 FERVLQ-RES 110 (111)
T ss_pred HHHHHc-CCC
Confidence 999998 553
No 97
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.08 E-value=1.5e-10 Score=76.87 Aligned_cols=98 Identities=16% Similarity=0.090 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHH-HHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHh
Q 029374 88 KRKAINYQAANIVSSSIQPLQNLAVVKY-IEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFI 166 (194)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~ 166 (194)
.++++.+.|+.++.+.+.+......+.. ... .......+...+.+.+.+..+|..|++ +++||+| ++|+||+++++
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~le~~l~~-~~~~l~G-~fSiAD~~l~~ 78 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFAG-AKAEPLSEAAQAAAEKLIAVAEALLPP-GAANLFG-EWCIADTDLAL 78 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCcccC-CccHHHHHHHH
Confidence 5789999999999999887521111011 111 111124567778889999999999974 3689999 59999999999
Q ss_pred hhhccc------ccchhhhHHhhcCCCCC
Q 029374 167 YVRSKP------FYNTQSSFQKQGVETPI 189 (194)
Q Consensus 167 ~l~~~~------~~~l~~w~~~~~~~~p~ 189 (194)
.+.|.. -|++.+|+++|.+ .|+
T Consensus 79 ~~~~~~~~g~~l~p~l~ay~~r~~~-rPa 106 (114)
T cd03195 79 MLNRLVLNGDPVPERLRDYARRQWQ-RPS 106 (114)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHC-CHH
Confidence 998831 1799999999998 453
No 98
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.05 E-value=1.3e-09 Score=73.00 Aligned_cols=87 Identities=13% Similarity=0.173 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhc-cCCCcccCCCchhhhhHH
Q 029374 86 DLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKD-YAGKYATGDEVFLVSFHC 164 (194)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~~~l~G~~~t~aD~~l 164 (194)
|+.+|+.+++++.+... +. ........ .+ . ..+.+.+.++.+|+.|++ .+++|++| ++|+|||++
T Consensus 1 d~~~ra~~~~~~~~~~~-~~---~~~~~~~~---~~-~-----~~~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l 66 (120)
T cd03203 1 DPAKREFADELLAYTDA-FT---KALYSSLI---KG-D-----PSAEAAAALDYIENALSKFDDGPFFLG-QFSLVDIAY 66 (120)
T ss_pred CHHHHHHHHHHHHHHHH-HH---HHHHHHHh---cC-C-----chHHHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHH
Confidence 46789999999998221 11 11111111 11 1 122346677888888863 23799999 999999999
Q ss_pred Hhhhhc--------------ccccchhhhHHhhcCC
Q 029374 165 FIYVRS--------------KPFYNTQSSFQKQGVE 186 (194)
Q Consensus 165 ~~~l~~--------------~~~~~l~~w~~~~~~~ 186 (194)
++.+.+ .++|++.+|+++|.+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~P~l~~W~~~~~~r 102 (120)
T cd03203 67 VPFIERFQIFLSELFNYDITEGRPNLAAWIEEMNKI 102 (120)
T ss_pred HHHHHHHHHHHHHhcCccccccCcHHHHHHHHHhcc
Confidence 887642 3789999999999884
No 99
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.05 E-value=7.9e-10 Score=67.16 Aligned_cols=71 Identities=20% Similarity=0.190 Sum_probs=56.6
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeee--eeHHHHHHHH
Q 029374 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVV--SDSFAILMYL 73 (194)
Q Consensus 1 m~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~--~es~aI~~~L 73 (194)
|++||+..+||+|++++.+|++.|++|..+.++-.. ...+++.+.++.+.+|+++.+|..+ .++..|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~--~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDS--AAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCH--HHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 899999999999999999999999999887776321 1234567778899999999888777 5666666654
No 100
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.02 E-value=1.1e-09 Score=71.30 Aligned_cols=93 Identities=16% Similarity=0.181 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhh
Q 029374 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYV 168 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l 168 (194)
++.+++.+++...+...... ...+...+ ....+...+...+.+.+.+..+|++|.+.+++|++|+++|+||+++++.+
T Consensus 2 e~~~v~~~~~~~~d~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~ 79 (104)
T cd03192 2 EAARVDALVDTIADLRAEFA-KYFYEKDG-EEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVL 79 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHhhcCch-HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHH
Confidence 35667777766543333222 12211000 01124567778888999999999999754468999999999999999887
Q ss_pred hc----------ccccchhhhHHhh
Q 029374 169 RS----------KPFYNTQSSFQKQ 183 (194)
Q Consensus 169 ~~----------~~~~~l~~w~~~~ 183 (194)
.+ ..+|++.+|++++
T Consensus 80 ~~~~~~~~~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 80 DYLLYLDPKLLLKKYPKLKALRERV 104 (104)
T ss_pred HHHHhhCchhhHHhChhHHHHHHhC
Confidence 65 2467888888764
No 101
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.01 E-value=1.2e-09 Score=68.97 Aligned_cols=55 Identities=22% Similarity=0.160 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhhhcc---------------cccchhhhHHhhc
Q 029374 128 WAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYVRSK---------------PFYNTQSSFQKQG 184 (194)
Q Consensus 128 ~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~---------------~~~~l~~w~~~~~ 184 (194)
...+.+.+.++.+|++|++ ++|++|+++|+|||++++.+.+. .+|++.+|++++.
T Consensus 19 ~~~~~~~~~l~~le~~L~~--~~yl~Gd~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 19 EIYSLAKKDLKALSDLLGD--KKFFFGDKPTSLDATVFGHLASILYAPLPNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHhCC--CCccCCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHHhC
Confidence 5677899999999999998 89999999999999998887552 3589999999874
No 102
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.01 E-value=7.7e-10 Score=74.53 Aligned_cols=58 Identities=12% Similarity=0.005 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhhhc----------ccccchhhhHHhhcC
Q 029374 126 DIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYVRS----------KPFYNTQSSFQKQGV 185 (194)
Q Consensus 126 ~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~----------~~~~~l~~w~~~~~~ 185 (194)
.+...+.+.+.|+.+|++|++ ++|++||++|+||+++++.+.+ ..+|++.+|+++|.+
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~--~~fl~Gd~~t~AD~~l~~~l~~~~~~~~~~~~~~~p~l~~W~~r~~~ 123 (124)
T cd03202 56 REAALANFRAALEPLRATLKG--QPFLGGAAPNYADYIVFGGFQWARIVSPFPLLEEDDPVYDWFERCLD 123 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcC--CCccCCCCCchhHHHHHHHHHHHHHcCcccccccCChHHHHHHHHhc
Confidence 457778899999999999998 8999999999999999888765 267999999999976
No 103
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=98.99 E-value=3e-09 Score=71.32 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhhhc--------------ccccchhhhHHhhcCC
Q 029374 127 IWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYVRS--------------KPFYNTQSSFQKQGVE 186 (194)
Q Consensus 127 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~--------------~~~~~l~~w~~~~~~~ 186 (194)
+...+.+.+.|..||+.|++ +++|++||++|+||+++++.+.+ ..+|++.+|+++|.+.
T Consensus 29 ~~~~~~l~~~l~~Le~~L~~-~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l~~w~~rl~~r 101 (121)
T cd03201 29 DGTEQALLDELEALEDHLKE-NGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSVKSYMKALFSR 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHhc-CCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHCC
Confidence 44567789999999999985 26899999999999999884322 3678999999999984
No 104
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.97 E-value=2.4e-09 Score=65.20 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=56.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHH
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILM 71 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~ 71 (194)
++||+.+.||+|.+++.+|+.+||+|+.+.+.... ...+++.+.++..++|++..||..+.....+..
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~--~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFP--ERKAELEERTGSSVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHCCCceEEEECCCCH--HHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHh
Confidence 58999999999999999999999999998877432 235578888899999999999988877665543
No 105
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.95 E-value=8.6e-10 Score=73.18 Aligned_cols=62 Identities=15% Similarity=0.051 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc-CCCcccCCCchhhhhHHHhhhhcc------cccchhhhHHhhcCCCC
Q 029374 125 RDIWAKTHIGKGFAALEKLLKDY-AGKYATGDEVFLVSFHCFIYVRSK------PFYNTQSSFQKQGVETP 188 (194)
Q Consensus 125 ~~~~~~~~~~~~l~~le~~L~~~-~~~~l~G~~~t~aD~~l~~~l~~~------~~~~l~~w~~~~~~~~p 188 (194)
..+...+.+.+.++.+|..++.. +++|++|| +|+||+++++.+.+. ..|++.+|++++.+ .|
T Consensus 38 ~~~~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~~~~~~~P~l~~~~~rv~~-rP 106 (114)
T cd03194 38 LSEAVQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFRTYGLPLSPAAQAYVDALLA-HP 106 (114)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHC-CH
Confidence 34566667777777888777532 47899999 999999999888762 24899999999998 44
No 106
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.94 E-value=3.9e-09 Score=68.05 Aligned_cols=84 Identities=10% Similarity=0.039 Sum_probs=59.7
Q ss_pred HHHHHHhcchhhHHHHHHHHH-HHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhhhc---
Q 029374 95 QAANIVSSSIQPLQNLAVVKY-IEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYVRS--- 170 (194)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~--- 170 (194)
+|.....+.+.+.+....... .......+...+...+++.+.|..+|++|++ ++| +++|+||+++++.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~---d~~TlADi~l~~~l~~~~~ 77 (98)
T cd03205 3 RLEALADGILDAAVAIVYERRLRPEEKRSQPWLERQRGKIERALDALEAELAK--LPL---DPLDLADIAVACALGYLDF 77 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCcHhhhChHHHHHHHHHHHHHHHHHHHhhhh--CCC---CCCCHHHHHHHHHHHHHHh
Confidence 344445555554443333312 1223344567888999999999999999987 788 8999999998888744
Q ss_pred --------ccccchhhhHHhh
Q 029374 171 --------KPFYNTQSSFQKQ 183 (194)
Q Consensus 171 --------~~~~~l~~w~~~~ 183 (194)
..+|++.+|+++|
T Consensus 78 ~~~~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 78 RHPDLDWRAAHPALAAWYARF 98 (98)
T ss_pred HccCcchhhhChHHHHHHHhC
Confidence 3678899999875
No 107
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.88 E-value=9e-09 Score=69.47 Aligned_cols=59 Identities=15% Similarity=0.067 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhhhc---------------ccccchhhhHHhhc
Q 029374 124 ERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYVRS---------------KPFYNTQSSFQKQG 184 (194)
Q Consensus 124 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~---------------~~~~~l~~w~~~~~ 184 (194)
...+...+...+.|+.|++.|++ ++|++||+||.||+++++.+.+ ..+|+|.+|++||.
T Consensus 53 ~~~ee~~~~~~~~l~aLs~~Lg~--~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 53 KTLDQVIEEVDQCCQALSQRLGT--QPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRRIE 126 (126)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHhcC
Confidence 45677888899999999999998 8999999999999999888644 25678899998874
No 108
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.88 E-value=5.7e-09 Score=71.48 Aligned_cols=59 Identities=8% Similarity=0.090 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhhhc----------ccccchhhhHHhhcCCC
Q 029374 128 WAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYVRS----------KPFYNTQSSFQKQGVET 187 (194)
Q Consensus 128 ~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~----------~~~~~l~~w~~~~~~~~ 187 (194)
..++.+...++.+-+.+.+ +++|+.|++||+||+.+++.+.. ..+|++.+|+++|+++.
T Consensus 79 D~r~~L~~a~~~w~~~~~~-~~~FlaGd~ptIADisvyg~l~s~e~~~~~~Dl~~~p~I~~W~eRm~~~v 147 (149)
T cd03197 79 DVREWLYDALNTWVAALGK-DRQFHGGSKPNLADLAVYGVLRSVEGHPAFKDMVEETKIGEWYERMDAAV 147 (149)
T ss_pred hHHHHHHHHHHHHHHHhcC-CCCccCCCCCCHHHHHHHHHHHHHHHhccccchhhCcCHHHHHHHHHHHh
Confidence 3455556666555555554 37899999999999999999766 36789999999998854
No 109
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.88 E-value=5.8e-09 Score=64.73 Aligned_cols=60 Identities=17% Similarity=0.361 Sum_probs=47.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeee
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVS 64 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~ 64 (194)
++||+...||+|.+++-+|+++||+|+.+.++-.. ...+....++...+|+++.++..+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~---~~~~~~~~~g~~~vPvv~i~~~~~~ 62 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVP---EAAETLRAQGFRQLPVVIAGDLSWS 62 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCH---HHHHHHHHcCCCCcCEEEECCEEEe
Confidence 89999999999999999999999999999887431 1122334468889999998776553
No 110
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.85 E-value=1.2e-08 Score=61.50 Aligned_cols=69 Identities=13% Similarity=0.121 Sum_probs=58.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHH
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMY 72 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~ 72 (194)
+++|+...||+|++++.+|+.++++|+.+.+.... ....++...++..++|++..+|..+.++..|.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~--~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDG--ELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCH--HHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 57999999999999999999999999988776432 2345667788899999999999999999888754
No 111
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.83 E-value=9.4e-09 Score=62.18 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=51.6
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeee
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSD 65 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~e 65 (194)
+++|+..+||+|.+++.+|+++|++|..+.++... ...+++.+.++.+.+|+++.+|..+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~--~~~~~~~~~~~~~~vP~i~~~~~~i~g 63 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDP--EALEELKKLNGYRSVPVVVIGDEHLSG 63 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCH--HHHHHHHHHcCCcccCEEEECCEEEec
Confidence 68999999999999999999999999988876532 234567788899999999988876654
No 112
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.79 E-value=2.3e-08 Score=61.10 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=55.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCC-ccceEEeCCeeeeeHHHHHHHH
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIG-YVPALVDGDFVVSDSFAILMYL 73 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~-~~P~L~~~~~~~~es~aI~~~L 73 (194)
++||+.+.||+|.+++-+|+..|++|+.+.++... ....++....... .+|++..+|..+.+...+.++-
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~--~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~ 72 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDP--ALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALE 72 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCH--HHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHH
Confidence 58999999999999999999999999998887431 1223444444444 8999999999999988887764
No 113
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=2.4e-08 Score=61.77 Aligned_cols=69 Identities=19% Similarity=0.172 Sum_probs=53.7
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHh-hCCCCccceEEeCCeeeeeHHHHHH
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLK-INPIGYVPALVDGDFVVSDSFAILM 71 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~-~~p~~~~P~L~~~~~~~~es~aI~~ 71 (194)
+++|+.+.||||.++.-+|..+|++|+.+.++....+ ...+++. .++..++|++..|+..+.....+.+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~-~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~ 72 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPE-EAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDA 72 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHH-HHHHHHHHhCCCCCcCEEEECCEEEeCcccHHH
Confidence 7899999999999999999999999999988866431 2334544 4488999999988876655444333
No 114
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.76 E-value=5e-08 Score=61.17 Aligned_cols=76 Identities=13% Similarity=0.131 Sum_probs=60.2
Q ss_pred CeeecccCCCchhHHHHHHHHH-----cCCcceEEEccCCCCCCCChhHHhhCCC--CccceEEeCCeeeeeHHHHHHHH
Q 029374 1 MLKLFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFLKINPI--GYVPALVDGDFVVSDSFAILMYL 73 (194)
Q Consensus 1 m~~Ly~~~~~p~~~~v~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~--~~~P~L~~~~~~~~es~aI~~~L 73 (194)
=+++|+.++||+|.+++-+|+. .|++|+.+.++-... ...++...... ..+|.+..||..+.+...|.+++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~--~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~ 79 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGI--SKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYV 79 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChH--HHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHH
Confidence 0899999999999999999999 899999988874321 12234333333 68999999999999999999999
Q ss_pred HhhCC
Q 029374 74 EEKYP 78 (194)
Q Consensus 74 ~~~~~ 78 (194)
...++
T Consensus 80 ~~~~~ 84 (85)
T PRK11200 80 KENLG 84 (85)
T ss_pred HHhcc
Confidence 88764
No 115
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.73 E-value=4.1e-08 Score=60.68 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=58.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHh
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~ 75 (194)
+++|+.+.||+|.+++-+|+.+|++|+.+.++... ....++........+|++..+|..+.+...+..+-.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~--~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDP--ALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCH--HHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 57999999999999999999999999999887442 1234566666788999999999999888887766544
No 116
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.70 E-value=3.3e-08 Score=67.67 Aligned_cols=60 Identities=15% Similarity=0.073 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhhhc---------------ccccchhhhHHhhcC
Q 029374 124 ERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYVRS---------------KPFYNTQSSFQKQGV 185 (194)
Q Consensus 124 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~---------------~~~~~l~~w~~~~~~ 185 (194)
...+...+...+.++.+|+.|++ ++|++||++|.+|+++++.+.. .++|+|.+|++||.+
T Consensus 60 ~~~~~~~~~a~~~l~~l~~~L~~--~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 60 EVEAEIYRDAKECLNLLSQRLGE--SQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNHLKQCPNLCRFCDRILS 134 (137)
T ss_pred hhHHHHHHHHHHHHHHHHHHHCC--CCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHHHHHCcHHHHHHHHHHH
Confidence 34667778889999999999998 8999999999999999877643 256899999999875
No 117
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.68 E-value=7.4e-08 Score=58.99 Aligned_cols=70 Identities=11% Similarity=0.152 Sum_probs=52.6
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhC-CCCccceEE-eCCeeeeeH--HHHHHHH
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKIN-PIGYVPALV-DGDFVVSDS--FAILMYL 73 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~-p~~~~P~L~-~~~~~~~es--~aI~~~L 73 (194)
++||+..+||+|.+++.+|+..|++|+.+.++-.. .....+...+ +...+|+++ ++|..+.++ ..|..+|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~--~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDE--GAADRVVSVNNGNMTVPTVKFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCH--hHHHHHHHHhCCCceeCEEEECCCeEecCCCHHHHHHHh
Confidence 68999999999999999999999999987765332 2234556666 889999997 677776544 3444444
No 118
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=98.68 E-value=1.6e-07 Score=60.82 Aligned_cols=83 Identities=19% Similarity=0.128 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHH
Q 029374 86 DLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCF 165 (194)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~ 165 (194)
|..+|++.+++..|+.+.+.++-........-.......-.+.....+.+.+...+..|.. |++||+| ..|+||..++
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~-g~~~LFG-ewsIAD~dlA 78 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLAD-GGPNLFG-EWSIADADLA 78 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT---SSTTS-S--HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhcc-CCCCccc-cchHHHHHHH
Confidence 4678999999999999999876554433332111111233566667778888889998876 7899999 7999999999
Q ss_pred hhhhc
Q 029374 166 IYVRS 170 (194)
Q Consensus 166 ~~l~~ 170 (194)
+++.+
T Consensus 79 ~ml~R 83 (117)
T PF14834_consen 79 LMLNR 83 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99988
No 119
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.64 E-value=7.2e-08 Score=58.49 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=44.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCe
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDF 61 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~ 61 (194)
++||+...||+|++++-+|+++|++|+.+.++-.. ...+.+...+...+|+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~---~~~~~~~~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQP---EAIDYVKAQGFRQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCH---HHHHHHHHcCCcccCEEEECCC
Confidence 58999999999999999999999999999887432 1223344456779999997553
No 120
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.56 E-value=8.1e-08 Score=56.06 Aligned_cols=60 Identities=13% Similarity=0.201 Sum_probs=49.3
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeee
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVV 63 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~ 63 (194)
+++|+...||+|.+++-+|+..|++|+.+.++... ...+++.+.....++|++..||..+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~--~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE--EAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH--HHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch--hHHHHHHHHcCCCccCEEEECCEEC
Confidence 57999999999999999999999999999998653 2234555666778999999888754
No 121
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.55 E-value=4.8e-07 Score=56.83 Aligned_cols=75 Identities=13% Similarity=0.121 Sum_probs=57.6
Q ss_pred eeecccCCCchhHHHHHHHHHcC-----CcceEEEccCCCCCCCChhHHhhCCC--CccceEEeCCeeeeeHHHHHHHHH
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKG-----LEYEYKAVNLVKGEQFSPDFLKINPI--GYVPALVDGDFVVSDSFAILMYLE 74 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~g-----i~~~~~~v~~~~~~~~~~~~~~~~p~--~~~P~L~~~~~~~~es~aI~~~L~ 74 (194)
+++|+.++||+|.+++-+|+..+ ++|+.+.++-.. ....++...... ..+|++..||..+.++..|.+++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~--~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEG--ISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCH--HHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHH
Confidence 68999999999999999999985 566666665321 112334444443 689999999999999999999998
Q ss_pred hhCC
Q 029374 75 EKYP 78 (194)
Q Consensus 75 ~~~~ 78 (194)
+.++
T Consensus 80 ~~~~ 83 (86)
T TIGR02183 80 ENFD 83 (86)
T ss_pred hccc
Confidence 8764
No 122
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.47 E-value=6.3e-07 Score=57.79 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=56.0
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCC-CChhHHhhCCCCccceEEeCCeeeeeHHHHHHH
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQ-FSPDFLKINPIGYVPALVDGDFVVSDSFAILMY 72 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~-~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~ 72 (194)
+++|+.+.||||.+++-+|...|++|+.+.++-..... ....+...+...++|.+..+|..+.+...+...
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHH
Confidence 68999999999999999999999999999888442111 112344556778999999999988888777653
No 123
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.46 E-value=7.8e-07 Score=55.16 Aligned_cols=74 Identities=11% Similarity=0.103 Sum_probs=59.6
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCC-CChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHh
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQ-FSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~-~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~ 75 (194)
+++|+...||+|.+++-+|...+++|+...++...... ....+.+.+...++|++..+|..+.++..|.++..+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 57899999999999999999999999999888664211 112344666678999999999999999998887655
No 124
>PHA03050 glutaredoxin; Provisional
Probab=98.42 E-value=1.1e-06 Score=57.57 Aligned_cols=70 Identities=17% Similarity=0.181 Sum_probs=55.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCC---cceEEEccCCC-CCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHH
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGL---EYEYKAVNLVK-GEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILM 71 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi---~~~~~~v~~~~-~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~ 71 (194)
+++|+.++||||.+++-+|...|+ +|+.+.++-.. +.....++.+.+...+||.+..+|..+.....+..
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 689999999999999999999999 78888887421 11123456677788899999999999888877665
No 125
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.25 E-value=5.8e-06 Score=51.37 Aligned_cols=74 Identities=12% Similarity=0.115 Sum_probs=57.3
Q ss_pred eeecccCCCchhHHHHHHHHHcCCc--ceEEEccCCCCCCC-ChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHh
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLE--YEYKAVNLVKGEQF-SPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~--~~~~~v~~~~~~~~-~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~ 75 (194)
+++|+..+||+|.+++-+|+..+++ |+...++....... ...+.......++|.+..+|..+.++..+.+...+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4689999999999999999999999 88888875431111 12244556677999999999999999888876654
No 126
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.19 E-value=7.5e-06 Score=52.56 Aligned_cols=64 Identities=16% Similarity=0.072 Sum_probs=49.8
Q ss_pred CCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHH
Q 029374 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYL 73 (194)
Q Consensus 8 ~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L 73 (194)
+.||||.+++-+|...|++|+.+.+.-. .....+....+...++|.+..+|..+-....+.+..
T Consensus 25 ~~Cp~C~~ak~lL~~~~i~~~~~di~~~--~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 25 PQCGFSARAVQILKACGVPFAYVNVLED--PEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred CCCchHHHHHHHHHHcCCCEEEEECCCC--HHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHH
Confidence 7899999999999999999998877522 112234456677789999999999888877776643
No 127
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.17 E-value=1e-05 Score=48.78 Aligned_cols=55 Identities=31% Similarity=0.385 Sum_probs=47.5
Q ss_pred CCchhHHHHHHHHHcCCc---ceEEEccCCCCCCCChhHHhhCCCCccceEEe-CCeeeeeHHHHHHHH
Q 029374 9 RSSCSHRVRIGLNLKGLE---YEYKAVNLVKGEQFSPDFLKINPIGYVPALVD-GDFVVSDSFAILMYL 73 (194)
Q Consensus 9 ~~p~~~~v~~~L~~~gi~---~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~-~~~~~~es~aI~~~L 73 (194)
.+|-|.++.+.|+..+.+ |+++..+- + .++|.|++|+|.+ +++++.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n-------~---~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNN-------P---WLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCC-------C---CcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 488999999999999999 77766552 2 2479999999998 999999999999998
No 128
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.17 E-value=9.7e-06 Score=51.31 Aligned_cols=64 Identities=16% Similarity=0.054 Sum_probs=51.3
Q ss_pred CCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHH
Q 029374 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYL 73 (194)
Q Consensus 8 ~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L 73 (194)
+.||||.+++-+|...|++|+.+.+.-. .....+..+.+...++|.+..+|..+.+...+.+..
T Consensus 21 ~~Cp~C~~ak~~L~~~~i~y~~idv~~~--~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 21 PRCGFSRKVVQILNQLGVDFGTFDILED--EEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred CCCcHHHHHHHHHHHcCCCeEEEEcCCC--HHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHH
Confidence 5899999999999999999999988633 122345556677789999999999998888877643
No 129
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.76 E-value=0.00011 Score=50.64 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=53.3
Q ss_pred eeecccC------CCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCC----CCccceEEeCCeeeeeHHHHHH
Q 029374 2 LKLFSYW------RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINP----IGYVPALVDGDFVVSDSFAILM 71 (194)
Q Consensus 2 ~~Ly~~~------~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p----~~~~P~L~~~~~~~~es~aI~~ 71 (194)
++||... ++|+|.+++-+|+..+|+|+.+.+++.. ...++..+... ..++|.+..+|..+-....+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~--~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~ 79 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDS--GFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLR 79 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCH--HHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHH
Confidence 4688777 8999999999999999999998887542 12234444433 3789999999999988887776
Q ss_pred H
Q 029374 72 Y 72 (194)
Q Consensus 72 ~ 72 (194)
.
T Consensus 80 L 80 (147)
T cd03031 80 L 80 (147)
T ss_pred H
Confidence 3
No 130
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.73 E-value=0.00013 Score=58.98 Aligned_cols=67 Identities=9% Similarity=0.170 Sum_probs=51.5
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHH-h--------hCCCCccceEEeCCeeeeeHHHHHH
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFL-K--------INPIGYVPALVDGDFVVSDSFAILM 71 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~-~--------~~p~~~~P~L~~~~~~~~es~aI~~ 71 (194)
+++|+.++||+|.++.-+|...||+|+.+.++-. ....++. . .....+||++..||..+.+-..+..
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~---~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDD---VKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCC---hhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 8999999999999999999999999999888722 1112221 1 2356789999988888877766554
No 131
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.69 E-value=5e-05 Score=51.52 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=31.6
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEcc
Q 029374 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 1 m~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~ 33 (194)
|+++|+.+.|++|.+++-+|+.+||+|+.+.+.
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 899999999999999999999999999998876
No 132
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.63 E-value=7.1e-05 Score=49.61 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=31.5
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEcc
Q 029374 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 1 m~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~ 33 (194)
|+++|+.+.|++|.+++-.|+.+|++|+.+.+.
T Consensus 1 mi~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 1 MIKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 899999999999999999999999999988875
No 133
>PRK10824 glutaredoxin-4; Provisional
Probab=97.56 E-value=0.00037 Score=45.96 Aligned_cols=63 Identities=13% Similarity=0.069 Sum_probs=50.2
Q ss_pred CCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHH
Q 029374 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMY 72 (194)
Q Consensus 8 ~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~ 72 (194)
+.||||.++.-+|...|++|..+.+.-.. .....+...+...++|-+..+|..+-.+..+...
T Consensus 28 p~Cpyc~~ak~lL~~~~i~~~~idi~~d~--~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l 90 (115)
T PRK10824 28 PSCGFSAQAVQALSACGERFAYVDILQNP--DIRAELPKYANWPTFPQLWVDGELVGGCDIVIEM 90 (115)
T ss_pred CCCchHHHHHHHHHHcCCCceEEEecCCH--HHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHH
Confidence 48999999999999999999988776321 2234556777788999999999999888777664
No 134
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.48 E-value=0.00016 Score=49.15 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=32.1
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEccC
Q 029374 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNL 34 (194)
Q Consensus 1 m~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~ 34 (194)
|+++|+.+.|+.|++++-.|+.+|++|+.+.+.-
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~ 34 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGK 34 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 8999999999999999999999999999998763
No 135
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.47 E-value=0.00016 Score=49.08 Aligned_cols=34 Identities=15% Similarity=0.257 Sum_probs=32.1
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEccC
Q 029374 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNL 34 (194)
Q Consensus 1 m~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~ 34 (194)
|+++|+.+.|+.|.+++-+|+.+|++|+.+.+.-
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~ 34 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIVS 34 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeC
Confidence 8999999999999999999999999999988763
No 136
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.43 E-value=0.00074 Score=39.89 Aligned_cols=57 Identities=18% Similarity=0.067 Sum_probs=40.3
Q ss_pred eeecccCCCchhHHHHHHHHHc-----CCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeee
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLK-----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVS 64 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~ 64 (194)
+++|+.++||+|.++.-+|++. ++++..+.++ ..++.........+|++..+|..+.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~------~~~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAA------EFPDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcc------cCHhHHHHcCCcccCEEEECCEEEE
Confidence 6899999999999999998864 4555555443 1234444555567999998776554
No 137
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0014 Score=42.45 Aligned_cols=71 Identities=14% Similarity=0.164 Sum_probs=55.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCC-CChhHHhhCCCCccceEEeCCeeeeeHHHHHHH
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQ-FSPDFLKINPIGYVPALVDGDFVVSDSFAILMY 72 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~-~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~ 72 (194)
..+|+-..||||++++-+|...|+++.+++++-..... -.....+.....++|.+..+|.-+-.+..+..+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~l 87 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMAL 87 (104)
T ss_pred EEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHH
Confidence 35678899999999999999999999999998653221 122334566677999999999998877777654
No 138
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.25 E-value=0.00033 Score=46.12 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=30.7
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccC
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNL 34 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~ 34 (194)
++||+.+.||+|.+++-+|+.+|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVE 33 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccC
Confidence 589999999999999999999999999988764
No 139
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=97.21 E-value=0.0016 Score=43.99 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhhhccc-------ccchhhhHHhhcCC
Q 029374 126 DIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYVRSKP-------FYNTQSSFQKQGVE 186 (194)
Q Consensus 126 ~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~~-------~~~l~~w~~~~~~~ 186 (194)
.....++++..|..+|..+.. .....| ++|+-||.+|+.|+... -+++.+|+++|.+.
T Consensus 57 t~~~i~~l~~~L~~Le~ll~~--~~~~n~-~LS~dDi~lFp~LR~Ltivkgi~~P~~V~~Y~~~~s~~ 121 (132)
T PF04399_consen 57 TPELIAELNADLEELEPLLAS--PNAVNG-ELSIDDIILFPILRSLTIVKGIQWPPKVRAYMDRMSKA 121 (132)
T ss_dssp HHHHHHHHHHHHHHHHHH-SC--TTBTTS-S--HHHHHHHHHHHHHCTCTTS---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcc--ccccCC-CCCHHHHHHHHHHhhhhhccCCcCCHHHHHHHHHHHHH
Confidence 456677888889999998886 455555 99999999999999953 26778898888763
No 140
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.14 E-value=0.00055 Score=44.52 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=30.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEcc
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~ 33 (194)
+++|+.+.||+|.+++-+|+.+|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 58999999999999999999999999998876
No 141
>PRK10853 putative reductase; Provisional
Probab=97.13 E-value=0.00068 Score=45.09 Aligned_cols=33 Identities=18% Similarity=0.424 Sum_probs=31.2
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEcc
Q 029374 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 1 m~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~ 33 (194)
|+++|+.+.|.-|++++-.|+++|++|+.+.+-
T Consensus 1 Mi~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 1 MVTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 899999999999999999999999999988765
No 142
>PTZ00062 glutaredoxin; Provisional
Probab=97.05 E-value=0.0024 Score=46.63 Aligned_cols=63 Identities=16% Similarity=0.028 Sum_probs=49.3
Q ss_pred CCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHH
Q 029374 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMY 72 (194)
Q Consensus 8 ~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~ 72 (194)
+.||||.++.-+|...|++|....+.-. ..........+...++|.+..+|..+-+...+.+.
T Consensus 126 p~C~~C~~~k~~L~~~~i~y~~~DI~~d--~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~l 188 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSSGVKYETYNIFED--PDLREELKVYSNWPTYPQLYVNGELIGGHDIIKEL 188 (204)
T ss_pred CCChhHHHHHHHHHHcCCCEEEEEcCCC--HHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHH
Confidence 5799999999999999999998777632 12233455667778999999999988887777663
No 143
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=96.98 E-value=0.00072 Score=45.30 Aligned_cols=58 Identities=9% Similarity=0.023 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhhhcc------c-ccchhhhHHhhcCCC
Q 029374 127 IWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYVRSK------P-FYNTQSSFQKQGVET 187 (194)
Q Consensus 127 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~------~-~~~l~~w~~~~~~~~ 187 (194)
....++++..|..++..+.. ... ++.++|+-||.+|+.|+.. . -+++.+|+++|.+..
T Consensus 59 ~~~i~~l~~~L~~l~~ll~~--~~~-~n~~ls~DDi~lFp~LR~Lt~vkgi~~P~~V~~Y~~~~s~~t 123 (128)
T cd03199 59 PQYIAALNALLEELDPLILS--SEA-VNGQLSTDDIILFPILRNLTLVKGLVFPPKVKAYLERMSALT 123 (128)
T ss_pred HHHHHHHHHHHHHHHHHHcC--ccc-cCCcCCHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHh
Confidence 46667889999999999954 333 4458999999999999994 2 277899999998743
No 144
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=96.98 E-value=0.0011 Score=44.02 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=31.0
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEcc
Q 029374 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 1 m~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~ 33 (194)
|+++|+.+.|.-|++++-.|+..||+|+.+.+-
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 699999999999999999999999999988766
No 145
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.00082 Score=54.91 Aligned_cols=96 Identities=13% Similarity=0.186 Sum_probs=71.2
Q ss_pred eCCeeeeeHHHHHHHHHhhCC-CCCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Q 029374 58 DGDFVVSDSFAILMYLEEKYP-QPPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKG 136 (194)
Q Consensus 58 ~~~~~~~es~aI~~~L~~~~~-~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (194)
.+|..+..+..+..|..+... .+.||+.+ .++.+++.|.++.... .-..+...
T Consensus 43 ~d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~~-------------------------~~~~~s~~ 96 (712)
T KOG1147|consen 43 LDGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSSTF-------------------------SFDEISSS 96 (712)
T ss_pred cccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhhc-------------------------chHHHHHH
Confidence 456666666666666554333 23488877 7799999999987531 11235677
Q ss_pred HHHHHHHhhccCCCcccCCCchhhhhHHHhhhhcc-----------cccchhhhHH
Q 029374 137 FAALEKLLKDYAGKYATGDEVFLVSFHCFIYVRSK-----------PFYNTQSSFQ 181 (194)
Q Consensus 137 l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~~-----------~~~~l~~w~~ 181 (194)
+..++..|.- ..||+|.++|+||+++|..++.. .+.++.+|+.
T Consensus 97 ~~~ld~~l~~--~t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk~~k~~~~v~Rw~~ 150 (712)
T KOG1147|consen 97 LSELDKFLVL--RTFLVGNSLSIADFAIWGALHSNGMRQEQLKAKKDYQNVERWYD 150 (712)
T ss_pred HHHHHhhhhH--HHHhhccchhHHHHHHHHHHhcccchHHHHHhhCCchhhhhhcC
Confidence 8888888887 88999999999999999999872 4577888887
No 146
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.86 E-value=0.0014 Score=43.52 Aligned_cols=32 Identities=19% Similarity=0.447 Sum_probs=29.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEcc
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~ 33 (194)
+++|+.+.||+|.+++-+|+.+|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 58999999999999999999999999988775
No 147
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.69 E-value=0.0091 Score=37.80 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=49.5
Q ss_pred eeecccCCCc------hhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCC----CCccceEEeCCeeeeeHHHHHH
Q 029374 2 LKLFSYWRSS------CSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINP----IGYVPALVDGDFVVSDSFAILM 71 (194)
Q Consensus 2 ~~Ly~~~~~p------~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p----~~~~P~L~~~~~~~~es~aI~~ 71 (194)
+++|....+. .|++|+.+|+.+||+|+.+.++... ....++.+..+ ...+|-+..++..+-+...+..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~--~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNE--ENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCH--HHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHH
Confidence 5677555544 6788999999999999999998653 22345554443 4789999999988888766654
No 148
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.64 E-value=0.0025 Score=41.42 Aligned_cols=33 Identities=15% Similarity=0.351 Sum_probs=30.6
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccC
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNL 34 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~ 34 (194)
+++|+.+.|+.|++++-.|+++|++|+.+.+.-
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~ 33 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRK 33 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEeccc
Confidence 589999999999999999999999999988773
No 149
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.63 E-value=0.017 Score=35.15 Aligned_cols=55 Identities=9% Similarity=0.177 Sum_probs=38.9
Q ss_pred CeeecccCCCchhHHH----HHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeee
Q 029374 1 MLKLFSYWRSSCSHRV----RIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVV 63 (194)
Q Consensus 1 m~~Ly~~~~~p~~~~v----~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~ 63 (194)
=+++|. .+||.|..+ .-++++.|+.++...++- .++ ...-....+|++..||..+
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~------~~~-a~~~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD------MNE-ILEAGVTATPGVAVDGELV 60 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC------HHH-HHHcCCCcCCEEEECCEEE
Confidence 067775 999999998 557778888888887771 122 2223457899999777654
No 150
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.59 E-value=0.003 Score=41.69 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=30.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEcc
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~ 33 (194)
++||+.+.|+.|++++-.|+++|++|+.+.+-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 68999999999999999999999999988776
No 151
>PRK10026 arsenate reductase; Provisional
Probab=96.55 E-value=0.003 Score=43.25 Aligned_cols=34 Identities=9% Similarity=-0.081 Sum_probs=31.1
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEccC
Q 029374 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNL 34 (194)
Q Consensus 1 m~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~ 34 (194)
|+++|+++.|.-|++++-.|+++|++|+.+.+--
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~ 36 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLE 36 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeC
Confidence 3899999999999999999999999999887653
No 152
>PHA02125 thioredoxin-like protein
Probab=96.54 E-value=0.011 Score=35.86 Aligned_cols=52 Identities=25% Similarity=0.284 Sum_probs=39.0
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEe
Q 029374 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVD 58 (194)
Q Consensus 1 m~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~ 58 (194)
|+.+|+.++|+.|.++.-.|+. +.++...++.. ...+......-..+|++..
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~~--~~~~~~~vd~~----~~~~l~~~~~v~~~PT~~~ 52 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLAN--VEYTYVDVDTD----EGVELTAKHHIRSLPTLVN 52 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHHH--HhheEEeeeCC----CCHHHHHHcCCceeCeEEC
Confidence 8899999999999998888864 55666666643 2456666666778999983
No 153
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0099 Score=35.50 Aligned_cols=64 Identities=23% Similarity=0.209 Sum_probs=47.9
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEccCCCC--------CCCChhHH--hhCCCCccceEE-eCCeeee
Q 029374 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKG--------EQFSPDFL--KINPIGYVPALV-DGDFVVS 64 (194)
Q Consensus 1 m~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~--------~~~~~~~~--~~~p~~~~P~L~-~~~~~~~ 64 (194)
|.+||+...||-|....-.|+..++.|+.+.+.-+-. ....++|- +.|..-.+|+|. +||.++.
T Consensus 3 kp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 3 KPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred CceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 3689999999999999999999999999998874321 12345553 445555789988 6776665
No 154
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.37 E-value=0.037 Score=33.70 Aligned_cols=57 Identities=19% Similarity=0.145 Sum_probs=39.1
Q ss_pred CeeecccCCCchhHHHHHHHHH----cCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCe
Q 029374 1 MLKLFSYWRSSCSHRVRIGLNL----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDF 61 (194)
Q Consensus 1 m~~Ly~~~~~p~~~~v~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~ 61 (194)
|+++|+.++||+|..+.-.++. .+..+....++... .++.........+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME----NPQKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc----CHHHHHHcCCccCCEEEECCE
Confidence 4789999999999988888753 34445556666542 334444455668999986664
No 155
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=95.94 E-value=0.011 Score=39.70 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=30.0
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEcc
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~ 33 (194)
++||+++.|.-|++++-.|+++|++|+.+.+-
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 68999999999999999999999999988765
No 156
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=95.47 E-value=0.019 Score=37.72 Aligned_cols=32 Identities=22% Similarity=0.136 Sum_probs=29.6
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEcc
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~ 33 (194)
+++|+.+.|.-|++++-.|+++|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999987765
No 157
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=95.43 E-value=0.081 Score=33.22 Aligned_cols=57 Identities=19% Similarity=0.125 Sum_probs=38.5
Q ss_pred eeecccCCCchhHHHHHHHHHc-----CCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeee
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLK-----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVS 64 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~ 64 (194)
+++|..++|++|..+.-+++.. ++.+..+.++ ..++......-..+|+++.||..+.
T Consensus 16 i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~------~~~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 16 FETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA------LFQDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH------hCHHHHHHcCCccCCEEEECCEEEE
Confidence 5788889999999988877643 4555555544 1344444455567999997776543
No 158
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=95.36 E-value=0.022 Score=37.59 Aligned_cols=32 Identities=25% Similarity=0.142 Sum_probs=29.6
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEcc
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~ 33 (194)
+++|+.+.|.-|++++-.|+..|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999987765
No 159
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=94.92 E-value=0.19 Score=30.89 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=38.4
Q ss_pred eeecccCCCchhHHHHHHHHHc--CCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCC
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLK--GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGD 60 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~--gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~ 60 (194)
++||+-+.|+.|..+.-.|+.. ..+++...+|... .++.... -.-.+|+|..+|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~----d~~l~~~-Y~~~IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDE----DPELFEK-YGYRIPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTT----THHHHHH-SCTSTSEEEETT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCC----CHHHHHH-hcCCCCEEEEcC
Confidence 6899999999999999999954 4556677777652 3443333 235899999665
No 160
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=94.76 E-value=0.16 Score=33.08 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=45.3
Q ss_pred CCchhHHHHHHHHH---cCCcceEEEccCCCCCCCChhHHhh-CC-CCccceEE-eCCe-------------eeeeHHHH
Q 029374 9 RSSCSHRVRIGLNL---KGLEYEYKAVNLVKGEQFSPDFLKI-NP-IGYVPALV-DGDF-------------VVSDSFAI 69 (194)
Q Consensus 9 ~~p~~~~v~~~L~~---~gi~~~~~~v~~~~~~~~~~~~~~~-~p-~~~~P~L~-~~~~-------------~~~es~aI 69 (194)
.||.|..+.=+|.. ..-..+++.|+... ...+..+. .. ...+|+|+ .++. .|+++..|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~R---PR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I 99 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPR---PRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRI 99 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCC---chHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHH
Confidence 48899888877763 22335677777664 22333322 22 35799999 4443 68999999
Q ss_pred HHHHHhhCC
Q 029374 70 LMYLEEKYP 78 (194)
Q Consensus 70 ~~~L~~~~~ 78 (194)
+.||.++|+
T Consensus 100 ~~~La~r~g 108 (112)
T PF11287_consen 100 LRYLAERHG 108 (112)
T ss_pred HHHHHHHcC
Confidence 999999997
No 161
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=94.53 E-value=0.36 Score=29.13 Aligned_cols=56 Identities=21% Similarity=0.097 Sum_probs=35.9
Q ss_pred eeecccCCCchhHHHHHH----HHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeee
Q 029374 2 LKLFSYWRSSCSHRVRIG----LNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSD 65 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~----L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~e 65 (194)
++++ .+.||+|.++.-+ +...|+.++...+. ..++. ....-..+|+++.||...+.
T Consensus 3 I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~------~~~~~-~~ygv~~vPalvIng~~~~~ 62 (76)
T PF13192_consen 3 IKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDIE------DFEEI-EKYGVMSVPALVINGKVVFV 62 (76)
T ss_dssp EEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEETT------THHHH-HHTT-SSSSEEEETTEEEEE
T ss_pred EEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEcc------CHHHH-HHcCCCCCCEEEECCEEEEE
Confidence 5674 5779999976664 45667777665542 12333 45566789999987776543
No 162
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=94.34 E-value=0.12 Score=36.62 Aligned_cols=43 Identities=21% Similarity=0.199 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhccCC---CcccCCC-chhhhhHHHhhhhcccccch
Q 029374 132 HIGKGFAALEKLLKDYAG---KYATGDE-VFLVSFHCFIYVRSKPFYNT 176 (194)
Q Consensus 132 ~~~~~l~~le~~L~~~~~---~~l~G~~-~t~aD~~l~~~l~~~~~~~l 176 (194)
.-.+.+..+++.|++ . .|++|+. +|-+||.+++.+...-.|++
T Consensus 112 ~a~~~l~~L~~~L~~--~~~~~~~f~~~~psslD~L~~ayL~l~l~p~L 158 (168)
T PF11801_consen 112 LAMECLSLLEELLGE--WEEARYFFGDSKPSSLDCLAFAYLALLLVPEL 158 (168)
T ss_pred HHHHHHHHHHHHHhh--ccccccccCCCCCCHHHHHHHHHHHHHhcccC
Confidence 456788889999988 6 8999977 99999999999998655443
No 163
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=94.00 E-value=0.13 Score=28.59 Aligned_cols=53 Identities=30% Similarity=0.248 Sum_probs=34.8
Q ss_pred eeecccCCCchhHHHHHHHH-----HcCCcceEEEccCCCCCCCChhHHhhCCCCccceEE
Q 029374 2 LKLFSYWRSSCSHRVRIGLN-----LKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~-----~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (194)
+.+|+...|++|.+++..+. ..++.+..+.++... ........++...+|+++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~P~~~ 58 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDP---ALEKELKRYGVGGVPTLV 58 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCCh---HHhhHHHhCCCccccEEE
Confidence 35677889999999999998 455555555544321 111212456778999988
No 164
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=93.98 E-value=0.18 Score=32.35 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=40.6
Q ss_pred eeecccCCCc------hhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhC---------CCCccceEEeCCeeeeeH
Q 029374 2 LKLFSYWRSS------CSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKIN---------PIGYVPALVDGDFVVSDS 66 (194)
Q Consensus 2 ~~Ly~~~~~p------~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~---------p~~~~P~L~~~~~~~~es 66 (194)
+++|....+. .++++..+|+.++|+|+.+.+.... ....++.+.. +....|-+..|+..+-+-
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e--~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdy 80 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDE--EARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDY 80 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-H--HHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCH--HHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeH
Confidence 7788665554 4678999999999999998888642 2223333332 223457888888877766
Q ss_pred HHHHH
Q 029374 67 FAILM 71 (194)
Q Consensus 67 ~aI~~ 71 (194)
..+.+
T Consensus 81 e~f~e 85 (99)
T PF04908_consen 81 EDFEE 85 (99)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 165
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.68 E-value=0.29 Score=31.18 Aligned_cols=65 Identities=12% Similarity=0.070 Sum_probs=45.6
Q ss_pred cCCCchhHHHHHHHHHcC-CcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHH
Q 029374 7 YWRSSCSHRVRIGLNLKG-LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYL 73 (194)
Q Consensus 7 ~~~~p~~~~v~~~L~~~g-i~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L 73 (194)
.+-|.||.++--+|...| ++|..+.|=-. +.-.....+.+.-.++|-|-.+|.-+-.|.-|.+-.
T Consensus 27 ~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d--~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em~ 92 (105)
T COG0278 27 FPQCGFSAQAVQILSACGVVDFAYVDVLQD--PEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREMY 92 (105)
T ss_pred CCCCCccHHHHHHHHHcCCcceeEEeeccC--HHHHhccHhhcCCCCCceeeECCEEeccHHHHHHHH
Confidence 467999999999999999 56555544322 222334445566689999999999888877666543
No 166
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=90.43 E-value=1.1 Score=29.76 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=14.0
Q ss_pred cceEE--eCCeeeeeHHHHHHHHHhhCCC
Q 029374 53 VPALV--DGDFVVSDSFAILMYLEEKYPQ 79 (194)
Q Consensus 53 ~P~L~--~~~~~~~es~aI~~~L~~~~~~ 79 (194)
-|-|. -+|+.+.|+.||++|+..-|.+
T Consensus 36 ~~~L~~~~~gF~L~e~NAIvrYl~nDF~~ 64 (122)
T PF09635_consen 36 GPLLKDKKSGFELFEPNAIVRYLANDFEG 64 (122)
T ss_dssp S--EEE-S--S----HHHHHHHHTT--TT
T ss_pred cceeeecCCceEEecccHHHHHHHhhcCC
Confidence 37785 4789999999999999998764
No 167
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=89.75 E-value=0.36 Score=31.52 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=22.8
Q ss_pred cccCCCchhHHHHHHHHHcCCcceEEEcc
Q 029374 5 FSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 5 y~~~~~p~~~~v~~~L~~~gi~~~~~~v~ 33 (194)
|+.+.|.-|++++-.|++.|++|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 78899999999999999999999987665
No 168
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=87.57 E-value=4.2 Score=24.38 Aligned_cols=53 Identities=9% Similarity=0.053 Sum_probs=34.2
Q ss_pred eecccCCCchhHHHHHHHHH-----cCCcceEEEccCCCCCCCChhHHhhCCCCccceEE--eCCe
Q 029374 3 KLFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDF 61 (194)
Q Consensus 3 ~Ly~~~~~p~~~~v~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~ 61 (194)
..++..+|++|....-.++. .++.+-.+..+ ..+.+........+|++. .+|.
T Consensus 15 l~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~------~~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 15 VDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVD------ENPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred EEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECC------CChhHHHhcCcccccEEEEEECCE
Confidence 45567889999998888876 55555444433 134454455566799876 4555
No 169
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=87.40 E-value=2.8 Score=26.34 Aligned_cols=58 Identities=12% Similarity=0.071 Sum_probs=35.0
Q ss_pred eeecccCCCchhHHHHHHHHH----cCCcceEEEccCCCCCCCChhHHhhCCCCccceEE--eCCeee
Q 029374 2 LKLFSYWRSSCSHRVRIGLNL----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~~ 63 (194)
+..|+.++|+.|....-.++. .+-.+....++.. ..+++.....-..+|++. .+|..+
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d----~~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID----EDQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC----CCHHHHHHCCCeeccEEEEEECCeEE
Confidence 456678999999988777754 1112344455543 234554444557899876 566544
No 170
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=85.27 E-value=3.6 Score=27.35 Aligned_cols=61 Identities=11% Similarity=-0.051 Sum_probs=34.1
Q ss_pred eecccCCCchhHHHHHHHH----HcCCcceEEEccCCCC-CCC----ChhHHhhCC----CCccceEE--eCCeee
Q 029374 3 KLFSYWRSSCSHRVRIGLN----LKGLEYEYKAVNLVKG-EQF----SPDFLKINP----IGYVPALV--DGDFVV 63 (194)
Q Consensus 3 ~Ly~~~~~p~~~~v~~~L~----~~gi~~~~~~v~~~~~-~~~----~~~~~~~~p----~~~~P~L~--~~~~~~ 63 (194)
..|+.++||+|+++.=.|+ ..++++-.+.++-... +.. ..++.+... ...+|+++ .+|..+
T Consensus 28 v~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v 103 (122)
T TIGR01295 28 FFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQV 103 (122)
T ss_pred EEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEE
Confidence 3467899999999666554 4456655555553221 111 123433322 34599988 466543
No 171
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=84.23 E-value=3.5 Score=35.03 Aligned_cols=57 Identities=26% Similarity=0.215 Sum_probs=38.9
Q ss_pred eeecccCCCchhHHHHHHH----HHc-CCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeee
Q 029374 2 LKLFSYWRSSCSHRVRIGL----NLK-GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVS 64 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L----~~~-gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~ 64 (194)
+++|..+.||+|-.+.-++ .+. +|..+.+.+.. .++....-.-..+|.++.||..+.
T Consensus 480 i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~------~~~~~~~~~v~~vP~~~i~~~~~~ 541 (555)
T TIGR03143 480 IKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH------FPDLKDEYGIMSVPAIVVDDQQVY 541 (555)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc------cHHHHHhCCceecCEEEECCEEEE
Confidence 6788899999997765544 344 67776666552 345554455678999997776543
No 172
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=83.37 E-value=1.5 Score=36.81 Aligned_cols=74 Identities=16% Similarity=0.121 Sum_probs=44.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeee----HHHHHHHHHhh
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSD----SFAILMYLEEK 76 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~e----s~aI~~~L~~~ 76 (194)
+++|..+.||||-.+.-+++..-+....+...+.+. ...++....-....||.+..++..+.+ -..+++.+.+.
T Consensus 120 i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~-~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 120 FETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDG-ALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTG 197 (517)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEc-hhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhcc
Confidence 678999999999887777654333221222222221 234566655566799999977665544 23455565543
No 173
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=82.53 E-value=0.74 Score=34.04 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhhhc----ccccchhhhHHhhcC
Q 029374 134 GKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYVRS----KPFYNTQSSFQKQGV 185 (194)
Q Consensus 134 ~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~----~~~~~l~~w~~~~~~ 185 (194)
...+..++..|++ ++|..|.+++-+|+.+|..+.- ..+++..+|+.++..
T Consensus 10 ~~glk~l~~sLA~--ks~~~g~~~s~edv~vf~al~~ep~s~~~v~~~~w~~~l~a 63 (231)
T KOG1668|consen 10 PAGLKKLNKSLAE--KSYIEGYQLSKEDVVVFAALGVEPQSARLVNAERWYSKLEA 63 (231)
T ss_pred hhhhhhhhHhhhc--ccCCCCCCcccccceeehhcccCcchhhhhHHHHHHHHHHH
Confidence 4678889999998 9999999999999999999955 457777888876654
No 174
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=82.15 E-value=2.8 Score=26.63 Aligned_cols=55 Identities=13% Similarity=-0.019 Sum_probs=32.3
Q ss_pred eeecccCCCchhHHHHHHH--------HHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEE
Q 029374 2 LKLFSYWRSSCSHRVRIGL--------NLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L--------~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (194)
+..|+.++|++|.+..-.+ ...+ .+....++.........++.+......+|++.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 3456689999998876433 1232 45555566543211234555555667899886
No 175
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=81.25 E-value=6.8 Score=25.54 Aligned_cols=48 Identities=8% Similarity=-0.065 Sum_probs=31.1
Q ss_pred ccCCCchhHHHHHHHHHcCCc---ceEEEccCCCCCCCChhHHhhCCCCccceEE
Q 029374 6 SYWRSSCSHRVRIGLNLKGLE---YEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (194)
Q Consensus 6 ~~~~~p~~~~v~~~L~~~gi~---~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (194)
+.++|++|..++-+++...-. .+...++.. ..++......-..+|++.
T Consensus 30 ~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d----~~~~l~~~~~v~~vPt~~ 80 (113)
T cd02975 30 SKEGCQYCEVTKQLLEELSELSDKLKLEIYDFD----EDKEKAEKYGVERVPTTI 80 (113)
T ss_pred CCCCCCChHHHHHHHHHHHHhcCceEEEEEeCC----cCHHHHHHcCCCcCCEEE
Confidence 568999999888887644322 233444433 245666666677899887
No 176
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=80.77 E-value=1.8 Score=36.42 Aligned_cols=74 Identities=19% Similarity=0.139 Sum_probs=43.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeH----HHHHHHHHhh
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDS----FAILMYLEEK 76 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es----~aI~~~L~~~ 76 (194)
+++|..+.||||-.+.-+++..-+....+..++.+. ..-++....-....||.+..++..+.+. ..+++.+.+.
T Consensus 121 i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~-~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 121 FETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDG-ALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEET 198 (515)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEc-hhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhc
Confidence 678999999999887777765443322222222222 2345555555667999999776655442 3344455443
No 177
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.87 E-value=7.2 Score=28.88 Aligned_cols=64 Identities=9% Similarity=-0.025 Sum_probs=46.9
Q ss_pred cCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHH
Q 029374 7 YWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMY 72 (194)
Q Consensus 7 ~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~ 72 (194)
.+.|.|++.+.-.|...|++|....|-.+. .-.......+--.++|-|-.+|.-+-+..-|.+-
T Consensus 151 ~P~CGFS~~~v~iL~~~nV~~~~fdIL~De--elRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m 214 (227)
T KOG0911|consen 151 EPKCGFSRQLVGILQSHNVNYTIFDVLTDE--ELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEM 214 (227)
T ss_pred cccccccHHHHHHHHHcCCCeeEEeccCCH--HHHHHhhhhcCCCCccceeECCEeccCcHHHHHH
Confidence 366999999999999999999887776432 2233344566678999999888877666655443
No 178
>PTZ00051 thioredoxin; Provisional
Probab=74.95 E-value=16 Score=22.64 Aligned_cols=56 Identities=11% Similarity=-0.014 Sum_probs=33.1
Q ss_pred eecccCCCchhHHHHHHHHH---cCCcceEEEccCCCCCCCChhHHhhCCCCccceEE--eCCee
Q 029374 3 KLFSYWRSSCSHRVRIGLNL---KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFV 62 (194)
Q Consensus 3 ~Ly~~~~~p~~~~v~~~L~~---~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~ 62 (194)
..|+..+|+.|+...-.++. ....+....++.. ......+...-..+|+++ .+|..
T Consensus 23 i~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 23 VDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVD----ELSEVAEKENITSMPTFKVFKNGSV 83 (98)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECc----chHHHHHHCCCceeeEEEEEeCCeE
Confidence 34568999999987666543 1112334444433 234555555667899887 45544
No 179
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=73.44 E-value=19 Score=22.25 Aligned_cols=68 Identities=13% Similarity=0.168 Sum_probs=43.1
Q ss_pred eecccCCCchhHHHHHHHH-----HcCCcceEEEccCCCCCCCChhHHhhCCCCccceEE--eCCeeee------eHHHH
Q 029374 3 KLFSYWRSSCSHRVRIGLN-----LKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVVS------DSFAI 69 (194)
Q Consensus 3 ~Ly~~~~~p~~~~v~~~L~-----~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~~~------es~aI 69 (194)
..++.++|+.|....-.++ ..+ ++....++.. ..+.+.....-..+|++. .+|..+. +...|
T Consensus 22 v~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~----~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 96 (103)
T PF00085_consen 22 VYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCD----ENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESL 96 (103)
T ss_dssp EEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETT----TSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHH
T ss_pred EEEeCCCCCccccccceeccccccccc-ccccchhhhh----ccchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHH
Confidence 4556789999998875553 332 5566666654 245666666778899887 5665432 33456
Q ss_pred HHHHHh
Q 029374 70 LMYLEE 75 (194)
Q Consensus 70 ~~~L~~ 75 (194)
..+|.+
T Consensus 97 ~~~i~~ 102 (103)
T PF00085_consen 97 IEFIEK 102 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 665553
No 180
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=72.35 E-value=22 Score=26.07 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=33.6
Q ss_pred eeecccCCCchhHHHHHHHHHcCC---cceEEEccCCCCCCCChhHHhhCCCCccceEEe
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGL---EYEYKAVNLVKGEQFSPDFLKINPIGYVPALVD 58 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi---~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~ 58 (194)
+.+|+.++||+|..+.-+++..-- ......++.. ..++......-..+|++..
T Consensus 137 I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~----~~~~~~~~~~V~~vPtl~i 192 (215)
T TIGR02187 137 IEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEAN----ENPDLAEKYGVMSVPKIVI 192 (215)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCC----CCHHHHHHhCCccCCEEEE
Confidence 456788999999988877764321 1233345533 2455555556678999983
No 181
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=72.16 E-value=24 Score=22.92 Aligned_cols=56 Identities=14% Similarity=0.085 Sum_probs=37.0
Q ss_pred ecccCCCchhHHHHHHHHH-----cCCcceEEEccCCCCCCCChhHHhhCCCCccceEE--eCCeeeee
Q 029374 4 LFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVVSD 65 (194)
Q Consensus 4 Ly~~~~~p~~~~v~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~~~e 65 (194)
.|+.++|+.|..+.-.++. .++ ....++.. ..++..+...-..+|++. .+|..+..
T Consensus 28 ~f~a~~c~~C~~~~p~l~~la~~~~~i--~f~~Vd~~----~~~~l~~~~~v~~vPt~l~fk~G~~v~~ 90 (113)
T cd02989 28 HFYHPEFFRCKIMDKHLEILAKKHLET--KFIKVNAE----KAPFLVEKLNIKVLPTVILFKNGKTVDR 90 (113)
T ss_pred EEECCCCccHHHHHHHHHHHHHHcCCC--EEEEEEcc----cCHHHHHHCCCccCCEEEEEECCEEEEE
Confidence 4557999999988777754 333 45556644 244555666678899887 57776543
No 182
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=69.40 E-value=19 Score=24.64 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=48.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHh---h-CCCCccceEEeCCeee---eeHHHHHHHHH
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLK---I-NPIGYVPALVDGDFVV---SDSFAILMYLE 74 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~---~-~p~~~~P~L~~~~~~~---~es~aI~~~L~ 74 (194)
+..|..+.|..|..-.-.++.+|+.+..+..+-. ....+ + -..+..-+.+.+|..+ .-..+|.+.|+
T Consensus 28 ~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~------~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~ 101 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDF------LALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLA 101 (149)
T ss_pred EEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcH------HHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHh
Confidence 5678899999999988899999988776655421 11111 1 0123455777788766 35688999999
Q ss_pred hhCC
Q 029374 75 EKYP 78 (194)
Q Consensus 75 ~~~~ 78 (194)
+..+
T Consensus 102 ~~pd 105 (149)
T COG3019 102 EKPD 105 (149)
T ss_pred CCCC
Confidence 8864
No 183
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=69.33 E-value=18 Score=23.31 Aligned_cols=72 Identities=15% Similarity=0.021 Sum_probs=41.2
Q ss_pred ecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCC-hhHHhhC---CCCccceEEeCCe-eeeeHHHHHHHHHhh
Q 029374 4 LFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFS-PDFLKIN---PIGYVPALVDGDF-VVSDSFAILMYLEEK 76 (194)
Q Consensus 4 Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~-~~~~~~~---p~~~~P~L~~~~~-~~~es~aI~~~L~~~ 76 (194)
|++...||+|.+..-.+...+-.-....++........ .....++ ....+-+ ..+|. ...++.|+.+-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 35588999999988888777654444444542111100 0111111 2233334 55565 899999999876654
No 184
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.93 E-value=22 Score=23.71 Aligned_cols=70 Identities=13% Similarity=-0.034 Sum_probs=37.2
Q ss_pred cCCCchhHHH----HHHHHHcCCcceEEEccCCCCC-CC--ChhHHhhCC-CCccceEE--e-CCeeeeeHHHHHHHHHh
Q 029374 7 YWRSSCSHRV----RIGLNLKGLEYEYKAVNLVKGE-QF--SPDFLKINP-IGYVPALV--D-GDFVVSDSFAILMYLEE 75 (194)
Q Consensus 7 ~~~~p~~~~v----~~~L~~~gi~~~~~~v~~~~~~-~~--~~~~~~~~p-~~~~P~L~--~-~~~~~~es~aI~~~L~~ 75 (194)
-++||.|.++ +=+|++..-....+.+...... .+ .-.|..... ..-+|+|. . .++.+.+...-..+|.+
T Consensus 42 qSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lve 121 (128)
T KOG3425|consen 42 QSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLVE 121 (128)
T ss_pred CcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHHHHH
Confidence 4689999874 4455656666666666554311 11 112221111 14578887 2 34456666666666655
Q ss_pred h
Q 029374 76 K 76 (194)
Q Consensus 76 ~ 76 (194)
.
T Consensus 122 ~ 122 (128)
T KOG3425|consen 122 M 122 (128)
T ss_pred H
Confidence 4
No 185
>PHA02278 thioredoxin-like protein
Probab=68.34 E-value=29 Score=22.26 Aligned_cols=59 Identities=12% Similarity=0.071 Sum_probs=33.2
Q ss_pred cccCCCchhHHHHHHHHHc----CCcceEEEccCCCCCCCChhHHhhCCCCccceEE--eCCeee
Q 029374 5 FSYWRSSCSHRVRIGLNLK----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (194)
Q Consensus 5 y~~~~~p~~~~v~~~L~~~----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~~ 63 (194)
|+.++|+.|+...=.++.. +.......++........++.....--..+|++. .+|..+
T Consensus 21 F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 21 ITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence 4578999998776555432 2222344444432111124555555667899887 577654
No 186
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=66.80 E-value=31 Score=22.16 Aligned_cols=56 Identities=16% Similarity=0.001 Sum_probs=32.2
Q ss_pred eecccCCCchhHHHHHHHH-----HcCCcceEEEccCCCCCCCChhHHhhCCCCccceEE--eCCee
Q 029374 3 KLFSYWRSSCSHRVRIGLN-----LKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFV 62 (194)
Q Consensus 3 ~Ly~~~~~p~~~~v~~~L~-----~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~ 62 (194)
..++.++|+.|....-.++ ..+.......++... .+.......-..+|++. .+|..
T Consensus 29 V~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~----~~~l~~~~~V~~~Pt~~i~~~g~~ 91 (111)
T cd02963 29 IKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH----ERRLARKLGAHSVPAIVGIINGQV 91 (111)
T ss_pred EEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc----cHHHHHHcCCccCCEEEEEECCEE
Confidence 3455789999976654432 233334445555432 34444555667899887 56654
No 187
>PHA03075 glutaredoxin-like protein; Provisional
Probab=64.43 E-value=12 Score=24.64 Aligned_cols=34 Identities=26% Similarity=0.246 Sum_probs=31.5
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCC
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLV 35 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~ 35 (194)
+.|+|-+.|+-|.-+.-+|++..=+|+..+|+..
T Consensus 5 LILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIl 38 (123)
T PHA03075 5 LILFGKPLCSVCESISEALKELEDEYDILRVNIL 38 (123)
T ss_pred EEEeCCcccHHHHHHHHHHHHhhccccEEEEEee
Confidence 7899999999999999999999999999999964
No 188
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=64.36 E-value=31 Score=21.17 Aligned_cols=57 Identities=12% Similarity=0.026 Sum_probs=34.7
Q ss_pred eecccCCCchhHHHHHHHHH---c-CCcceEEEccCCCCCCCChhHHhhCCCCccceEE--eCCeee
Q 029374 3 KLFSYWRSSCSHRVRIGLNL---K-GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (194)
Q Consensus 3 ~Ly~~~~~p~~~~v~~~L~~---~-gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~~ 63 (194)
..|+.++|+.|++..-.++. . +..+....++.. ..++..+......+|++. .+|..+
T Consensus 19 v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~----~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 19 LHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE----ELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc----cCHHHHHhcCCccccEEEEEECCEEE
Confidence 34557999999988776654 2 334555555543 234454444556799877 566543
No 189
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=63.12 E-value=37 Score=24.85 Aligned_cols=56 Identities=11% Similarity=0.038 Sum_probs=33.9
Q ss_pred eeeccc---CCCchhHHHHHHHHHcC-----CcceEEEccCCCCCCCChhHHhhCCCCccceEE--eCCe
Q 029374 2 LKLFSY---WRSSCSHRVRIGLNLKG-----LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDF 61 (194)
Q Consensus 2 ~~Ly~~---~~~p~~~~v~~~L~~~g-----i~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~ 61 (194)
+.+|.. .+|+.|..+.-.+++.. +.+..+.++.. ..++......-..+|++. .+|.
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~----~~~~l~~~~~V~~~Pt~~~f~~g~ 88 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTP----EDKEEAEKYGVERVPTTIILEEGK 88 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCc----ccHHHHHHcCCCccCEEEEEeCCe
Confidence 345656 88999998877775442 33334444432 244555555667899887 4543
No 190
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=58.71 E-value=6.5 Score=22.55 Aligned_cols=21 Identities=43% Similarity=0.649 Sum_probs=15.9
Q ss_pred eeecccC----CCchhHHHHHHHHH
Q 029374 2 LKLFSYW----RSSCSHRVRIGLNL 22 (194)
Q Consensus 2 ~~Ly~~~----~~p~~~~v~~~L~~ 22 (194)
|+||-+- .|.||+||-.+|..
T Consensus 3 mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 3 MKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred ceeeEeecCCchHHHHHHHHHHHhC
Confidence 6777543 47799999999974
No 191
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=56.47 E-value=27 Score=22.05 Aligned_cols=55 Identities=13% Similarity=-0.055 Sum_probs=30.6
Q ss_pred ecccCCCchhHHHHHHHHH----cC-CcceEEEccCCCCCCCChhHHhhCCCCccceEE--eCCeee
Q 029374 4 LFSYWRSSCSHRVRIGLNL----KG-LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (194)
Q Consensus 4 Ly~~~~~p~~~~v~~~L~~----~g-i~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~~ 63 (194)
.|+.++|+.|....-.++. .+ -......++.. .++..+...-..+|++. .+|..+
T Consensus 23 ~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-----~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 23 DVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-----TIDTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred EEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-----CHHHHHHcCCCcCcEEEEEECCEEE
Confidence 4557999999876655542 11 11233334432 23444455567789776 566543
No 192
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=56.21 E-value=57 Score=21.63 Aligned_cols=59 Identities=7% Similarity=-0.032 Sum_probs=30.7
Q ss_pred CCCchhHHHHHHHH----HcCCcceEEEccCCCCC---CCChhHHhhCCCC-ccceEE--eCCeeeeeH
Q 029374 8 WRSSCSHRVRIGLN----LKGLEYEYKAVNLVKGE---QFSPDFLKINPIG-YVPALV--DGDFVVSDS 66 (194)
Q Consensus 8 ~~~p~~~~v~~~L~----~~gi~~~~~~v~~~~~~---~~~~~~~~~~p~~-~~P~L~--~~~~~~~es 66 (194)
.+||.|++..-.++ ...-.+....|+..+.. ....++....... .+|++. .++..+.|.
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~~ 106 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVED 106 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceecch
Confidence 78999987655443 33222445555544311 1223444332334 799987 455555443
No 193
>PRK09381 trxA thioredoxin; Provisional
Probab=53.99 E-value=54 Score=20.69 Aligned_cols=56 Identities=14% Similarity=0.013 Sum_probs=32.8
Q ss_pred ecccCCCchhHHHHHHHH----HcCCcceEEEccCCCCCCCChhHHhhCCCCccceEE--eCCeee
Q 029374 4 LFSYWRSSCSHRVRIGLN----LKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (194)
Q Consensus 4 Ly~~~~~p~~~~v~~~L~----~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~~ 63 (194)
.++.++||.|....-.++ ..+-.+....++... .+.......-..+|+++ .+|..+
T Consensus 27 ~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 27 DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ----NPGTAPKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC----ChhHHHhCCCCcCCEEEEEeCCeEE
Confidence 344789999988765553 222234555566543 33444444567899886 566544
No 194
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.72 E-value=23 Score=27.19 Aligned_cols=58 Identities=10% Similarity=0.099 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhC----CCCccceEEeCCeeeeeHHHHHH
Q 029374 12 CSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKIN----PIGYVPALVDGDFVVSDSFAILM 71 (194)
Q Consensus 12 ~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~----p~~~~P~L~~~~~~~~es~aI~~ 71 (194)
.|..||.+|+-.+|.|+.+.|++... ...+...+- -.-.+|.+..+|..|-....|.+
T Consensus 149 ~C~~VR~ilesf~V~v~ERDVSMd~~--fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~ 210 (281)
T KOG2824|consen 149 DCNAVRAILESFRVKVDERDVSMDSE--FREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVR 210 (281)
T ss_pred HHHHHHHHHHhCceEEEEecccccHH--HHHHHHHHHhcccccCccCeEEEccEEeccHHHhhh
Confidence 57889999999999999999998752 222332221 23568977788988887777765
No 195
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=53.29 E-value=20 Score=25.07 Aligned_cols=36 Identities=17% Similarity=0.075 Sum_probs=25.0
Q ss_pred eec-ccCCCchhHH-------HHHHHHHcCCcceEEEccCCCCC
Q 029374 3 KLF-SYWRSSCSHR-------VRIGLNLKGLEYEYKAVNLVKGE 38 (194)
Q Consensus 3 ~Ly-~~~~~p~~~~-------v~~~L~~~gi~~~~~~v~~~~~~ 38 (194)
.|| +..+||.|+. +.-.+...+-+++++.|+.+..+
T Consensus 37 ~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~ 80 (157)
T KOG2501|consen 37 GLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDE 80 (157)
T ss_pred EEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCH
Confidence 344 4567888864 44556677789999999987643
No 196
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=52.79 E-value=19 Score=23.43 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=21.7
Q ss_pred cceEE-eCCeeeeeHHHHHHHHHhhCC
Q 029374 53 VPALV-DGDFVVSDSFAILMYLEEKYP 78 (194)
Q Consensus 53 ~P~L~-~~~~~~~es~aI~~~L~~~~~ 78 (194)
+|.+. .+|..++.|..|+++..+++.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 45555 799999999999999999874
No 197
>PRK09266 hypothetical protein; Provisional
Probab=52.29 E-value=14 Score=28.02 Aligned_cols=60 Identities=25% Similarity=0.278 Sum_probs=41.9
Q ss_pred HHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHhhCC
Q 029374 19 GLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYP 78 (194)
Q Consensus 19 ~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~~~~ 78 (194)
.++..|++++...+++.+-....+.|+.-+-.|-+|+-..|+..+.+...|.+.|.+.|.
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~ 259 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAYE 259 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHHH
Confidence 455679999988888765333344556555569999999888777655677777776664
No 198
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=51.69 E-value=62 Score=21.14 Aligned_cols=19 Identities=5% Similarity=-0.025 Sum_probs=13.4
Q ss_pred ecccCCCchhHHHHHHHHH
Q 029374 4 LFSYWRSSCSHRVRIGLNL 22 (194)
Q Consensus 4 Ly~~~~~p~~~~v~~~L~~ 22 (194)
-++..+|++|.+..-.+..
T Consensus 25 ~F~a~WC~~C~~~~~~~~~ 43 (117)
T cd02959 25 LIHKTWCGACKALKPKFAE 43 (117)
T ss_pred EEeCCcCHHHHHHHHHHhh
Confidence 3457999999887655544
No 199
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=51.23 E-value=77 Score=21.68 Aligned_cols=74 Identities=12% Similarity=-0.077 Sum_probs=45.6
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCC----ccceEEeCCeeeeeHHHHHHHHHhhC
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIG----YVPALVDGDFVVSDSFAILMYLEEKY 77 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~----~~P~L~~~~~~~~es~aI~~~L~~~~ 77 (194)
+.+++.--|+.|-..--+|...+-.-.....++... .....+...+.. ..=.++.+|..+.+|.|+++-+...-
T Consensus 10 ~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e--~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i~~~L~ 87 (137)
T COG3011 10 LVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSE--PGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRILRLLP 87 (137)
T ss_pred EEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCc--hhhhHHhhcCCChhhhheeeEecCCceEeccHHHHHHHHHCC
Confidence 566668899999886666666655555555554421 122223222221 12234468999999999999887764
No 200
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=50.66 E-value=25 Score=24.87 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=25.5
Q ss_pred eeecccCCCchhHHHH----HHHHHc-CCcceEEEccCC
Q 029374 2 LKLFSYWRSSCSHRVR----IGLNLK-GLEYEYKAVNLV 35 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~----~~L~~~-gi~~~~~~v~~~ 35 (194)
+++|+...||||.... -+++.. ++.++.+++.+.
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 5788899999996644 344455 888888888865
No 201
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=50.26 E-value=32 Score=21.34 Aligned_cols=53 Identities=9% Similarity=-0.029 Sum_probs=28.1
Q ss_pred eecccCCCchhHHHHHHHH----HcC--CcceEEEccCCCCCCCChhHHhhCCCCccceEE
Q 029374 3 KLFSYWRSSCSHRVRIGLN----LKG--LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (194)
Q Consensus 3 ~Ly~~~~~p~~~~v~~~L~----~~g--i~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (194)
.+|+..+|+.|+...-.+. ... -.+....++... ...+.+.....-..+|+++
T Consensus 22 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 22 VMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK--PEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred EEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC--CccHHHHHhCCCccccEEE
Confidence 3556789999987643332 211 223344444432 1234444444556789887
No 202
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=49.25 E-value=63 Score=20.06 Aligned_cols=53 Identities=19% Similarity=0.151 Sum_probs=30.9
Q ss_pred ecccCCCchhHHHHHHHHH-----cCCcceEEEccCCCCCCCChhHHhhCCCCccceEE--eCCe
Q 029374 4 LFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDF 61 (194)
Q Consensus 4 Ly~~~~~p~~~~v~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~ 61 (194)
.++.++|+.|....-.++. .|. +....++... .+...+...-..+|++. .+|.
T Consensus 24 ~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 24 NFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGD----DRMLCRSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred EEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCc----cHHHHHHcCCCccCEEEEEcCCC
Confidence 4557899999876555532 232 4445566542 34444444557889886 4453
No 203
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=48.88 E-value=48 Score=21.61 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=12.6
Q ss_pred eeecccCCCchhHHHHH
Q 029374 2 LKLFSYWRSSCSHRVRI 18 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~ 18 (194)
+..|+..+|++|++..-
T Consensus 18 lv~f~a~wC~~C~~~~~ 34 (125)
T cd02951 18 LLLFSQPGCPYCDKLKR 34 (125)
T ss_pred EEEEeCCCCHHHHHHHH
Confidence 44566899999988653
No 204
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=47.14 E-value=81 Score=20.75 Aligned_cols=55 Identities=15% Similarity=0.042 Sum_probs=34.1
Q ss_pred cccCCCchhHHHHHHHHHcCCc----ceEEEccCCCCCCCChhHHhhCCCCccceEE--eCCeee
Q 029374 5 FSYWRSSCSHRVRIGLNLKGLE----YEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (194)
Q Consensus 5 y~~~~~p~~~~v~~~L~~~gi~----~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~~ 63 (194)
|+..+|+.|+...-.++..--. .....|+.. ..++......-..+|++. -+|..+
T Consensus 21 F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD----~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 21 FGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDID----EVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred EECCCChhHHHHHHHHHHHHHHccCceEEEEEECC----CCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 5578999998776666432211 234455544 245666665667799887 566654
No 205
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=46.07 E-value=99 Score=21.45 Aligned_cols=57 Identities=11% Similarity=0.121 Sum_probs=32.0
Q ss_pred ecccCCCchhHHHHHHHHH-----cCCcceEEEccCCCCCCCChhHHhhCCC------CccceEE--eCCeeee
Q 029374 4 LFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFLKINPI------GYVPALV--DGDFVVS 64 (194)
Q Consensus 4 Ly~~~~~p~~~~v~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~------~~~P~L~--~~~~~~~ 64 (194)
.|+.++|+.|....-.++. .+-.++...++... .++..+...- +.+|+++ .+|..+.
T Consensus 53 ~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~----~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 53 EFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR----FPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC----CHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 4557899999877655532 22234555666543 2333332222 2389887 5776654
No 206
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=44.78 E-value=30 Score=24.91 Aligned_cols=31 Identities=13% Similarity=0.162 Sum_probs=21.3
Q ss_pred eeecccCCCchhHHHHHHHHH--cCCcceEEEc
Q 029374 2 LKLFSYWRSSCSHRVRIGLNL--KGLEYEYKAV 32 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~--~gi~~~~~~v 32 (194)
+.+|..+.||||++..-.+.. .++.+....+
T Consensus 81 i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~ 113 (197)
T cd03020 81 VYVFTDPDCPYCRKLEKELKPNADGVTVRIFPV 113 (197)
T ss_pred EEEEECCCCccHHHHHHHHhhccCceEEEEEEc
Confidence 456778999999999888874 3444444433
No 207
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=42.99 E-value=35 Score=27.52 Aligned_cols=111 Identities=12% Similarity=0.071 Sum_probs=63.7
Q ss_pred cceEEeCCeeeeeHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHH----HHhcCccHHHHH
Q 029374 53 VPALVDGDFVVSDSFAILMYLEEKYPQPPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYI----EEKAGADERDIW 128 (194)
Q Consensus 53 ~P~L~~~~~~~~es~aI~~~L~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 128 (194)
.+.+.+.++.+.|+.+|..-|...- +.-.-|-+..++..+..|+.-++..-.+--+-.++... -...+. +.
T Consensus 98 w~~~~~~dQ~~VEaa~la~aL~~a~-~~lW~~L~~~~k~~l~~wL~~~~~~~~~~nNW~lF~v~v~~~L~~~G~----~~ 172 (361)
T PF10022_consen 98 WGFIGDYDQRLVEAASLALALLRAP-EWLWDPLDEEEKENLVDWLKQIRGIKPPDNNWLLFRVMVEAFLKKVGE----EY 172 (361)
T ss_pred cCCcccchhhHhHHHHHHHHHHHCH-HHHHhhCCHHHHHHHHHHHHhcCcCCCccchhHHHHHHHHHHHHHcCC----CC
Confidence 3445556789999999998887652 21223447788888888888665543221111111111 111121 11
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhhhc
Q 029374 129 AKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYVRS 170 (194)
Q Consensus 129 ~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~ 170 (194)
-.+.+...++.+|+.-.+ ..|.....-.-.|.+-.-.++.
T Consensus 173 d~~~i~~~l~~~e~~Y~G--dGWY~DG~~~~~DYYns~aih~ 212 (361)
T PF10022_consen 173 DEERIDYDLERIEEWYLG--DGWYSDGPEFQFDYYNSWAIHP 212 (361)
T ss_pred cHHHHHHHHHHHHHHhcc--CCccccCCccCCcchHHHHHHH
Confidence 226788888999998776 5676633335567665444433
No 208
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=42.70 E-value=74 Score=19.79 Aligned_cols=50 Identities=12% Similarity=-0.008 Sum_probs=29.0
Q ss_pred ecccCCCchhHHHHHHHHHcCC----cceEEEccCCCCCCCChhHHhhCCCCccceEE
Q 029374 4 LFSYWRSSCSHRVRIGLNLKGL----EYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (194)
Q Consensus 4 Ly~~~~~p~~~~v~~~L~~~gi----~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (194)
.|+.++|+.|.+..-.++...- .+....++... .++......-..+|++.
T Consensus 25 ~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~i~~~Pt~~ 78 (104)
T cd03004 25 DFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK----YESLCQQANIRAYPTIR 78 (104)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc----hHHHHHHcCCCcccEEE
Confidence 4557899999876555542211 23444555432 34444445567899887
No 209
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=42.47 E-value=1e+02 Score=20.57 Aligned_cols=62 Identities=10% Similarity=0.056 Sum_probs=33.8
Q ss_pred cccCCCchhHHHHH-HHH------HcCCcceEEEccCCCCCCCChhHHh----hCCCCccceEE---eCCeeeeeH
Q 029374 5 FSYWRSSCSHRVRI-GLN------LKGLEYEYKAVNLVKGEQFSPDFLK----INPIGYVPALV---DGDFVVSDS 66 (194)
Q Consensus 5 y~~~~~p~~~~v~~-~L~------~~gi~~~~~~v~~~~~~~~~~~~~~----~~p~~~~P~L~---~~~~~~~es 66 (194)
++..+|++|++..- .+. ...-.|..+.++..........+.. .+..+.+|+++ .+|..+..+
T Consensus 22 f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 22 IGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 46789999987632 222 2233577777776431111111211 23456789887 367777665
No 210
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=40.86 E-value=58 Score=20.90 Aligned_cols=56 Identities=13% Similarity=0.088 Sum_probs=33.2
Q ss_pred ecccCCCchhHHHHHHHHH-----cCCcceEEEccCCCCCCCChhHHhhCCCCccceEE--eCCeeeeeH
Q 029374 4 LFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVVSDS 66 (194)
Q Consensus 4 Ly~~~~~p~~~~v~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~~~es 66 (194)
.|+.++|+.|..+.-.++. .++ ....++... . .......-..+|++. .+|..+...
T Consensus 30 ~F~a~~c~~C~~l~~~l~~la~~~~~v--~f~~vd~~~----~-~l~~~~~i~~~Pt~~~f~~G~~v~~~ 92 (113)
T cd02957 30 HFYEPGFPRCKILDSHLEELAAKYPET--KFVKINAEK----A-FLVNYLDIKVLPTLLVYKNGELIDNI 92 (113)
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCCCc--EEEEEEchh----h-HHHHhcCCCcCCEEEEEECCEEEEEE
Confidence 4557899999877666643 233 334455432 1 444444556899887 577665433
No 211
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=40.49 E-value=23 Score=20.46 Aligned_cols=32 Identities=16% Similarity=0.093 Sum_probs=19.7
Q ss_pred eecccCCCchhHHHHHHHHHcCCcceEEEccC
Q 029374 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNL 34 (194)
Q Consensus 3 ~Ly~~~~~p~~~~v~~~L~~~gi~~~~~~v~~ 34 (194)
++|......-+..++-+|+..||++....-..
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~ 33 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNEHM 33 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S---
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECCcc
Confidence 67766777788999999999999988765553
No 212
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=39.66 E-value=88 Score=19.03 Aligned_cols=55 Identities=16% Similarity=0.025 Sum_probs=33.8
Q ss_pred ecccCCCchhHHHHHHHHHcC----CcceEEEccCCCCCCCChhHHhhCCCCccceEE--eCCee
Q 029374 4 LFSYWRSSCSHRVRIGLNLKG----LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFV 62 (194)
Q Consensus 4 Ly~~~~~p~~~~v~~~L~~~g----i~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~ 62 (194)
.++.++|+.|.+..-.++... -.+....++.. ..+.......-..+|+++ .+|..
T Consensus 18 ~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~----~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 18 DFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCD----AQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred EEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEecc----CCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 345789999988766664321 12444556554 245555555667899887 56654
No 213
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=38.76 E-value=41 Score=24.48 Aligned_cols=34 Identities=18% Similarity=0.028 Sum_probs=24.3
Q ss_pred eeecccCCCchhHH----HHHHHHHcCCcceEEEccCC
Q 029374 2 LKLFSYWRSSCSHR----VRIGLNLKGLEYEYKAVNLV 35 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~----v~~~L~~~gi~~~~~~v~~~ 35 (194)
+.+|+...||||.- ..-++...++.++.+.+.+.
T Consensus 3 Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L~ 40 (209)
T cd03021 3 IELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFLG 40 (209)
T ss_pred eEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence 57888999999965 34445567777777777653
No 214
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=38.70 E-value=37 Score=24.20 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=22.4
Q ss_pred eeecccCCCchhHHHH----HHHHHc----CCcceEEEccCC
Q 029374 2 LKLFSYWRSSCSHRVR----IGLNLK----GLEYEYKAVNLV 35 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~----~~L~~~----gi~~~~~~v~~~ 35 (194)
+++|+...||||.-.. -+++.. ++.++.+.+.+.
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L~ 42 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFELN 42 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeeeC
Confidence 5788899999997443 344444 566666666544
No 215
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=38.35 E-value=40 Score=25.56 Aligned_cols=20 Identities=5% Similarity=-0.014 Sum_probs=15.7
Q ss_pred eeecccCCCchhHHHHHHHH
Q 029374 2 LKLFSYWRSSCSHRVRIGLN 21 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~ 21 (194)
+..|..+.||||++..-.+.
T Consensus 121 I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 121 VYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEECCCChhHHHHHHHHH
Confidence 45677889999999877654
No 216
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=38.33 E-value=37 Score=20.38 Aligned_cols=22 Identities=9% Similarity=-0.209 Sum_probs=17.0
Q ss_pred eeecccCCCchhHHHHHHHHHc
Q 029374 2 LKLFSYWRSSCSHRVRIGLNLK 23 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~~ 23 (194)
+.+|....||+|....-.++..
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 3577789999998877777653
No 217
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=37.55 E-value=1.2e+02 Score=20.05 Aligned_cols=32 Identities=13% Similarity=0.020 Sum_probs=20.2
Q ss_pred ceEEEccCCCCCCCChhHHhhCCCCccceEE--eCCee
Q 029374 27 YEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFV 62 (194)
Q Consensus 27 ~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~ 62 (194)
+....|+.. ..++..+...-..+|+|. .+|..
T Consensus 66 v~~~kVD~d----~~~~La~~~~I~~iPTl~lfk~G~~ 99 (120)
T cd03065 66 IGFGLVDSK----KDAKVAKKLGLDEEDSIYVFKDDEV 99 (120)
T ss_pred CEEEEEeCC----CCHHHHHHcCCccccEEEEEECCEE
Confidence 444555543 245666666678899997 57764
No 218
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=37.22 E-value=1.3e+02 Score=20.34 Aligned_cols=58 Identities=10% Similarity=0.008 Sum_probs=31.4
Q ss_pred ecccCCCchhHHHHHHHHH----cCCcceEEEccCCCCCCCChhHHhhCCCCccceEE--e-CCeee
Q 029374 4 LFSYWRSSCSHRVRIGLNL----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--D-GDFVV 63 (194)
Q Consensus 4 Ly~~~~~p~~~~v~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~-~~~~~ 63 (194)
.|+..+|+.|....-.++. .+-.++.+.++... ...........-..+|+++ + +|..+
T Consensus 26 ~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~--~~~~~~~~~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 26 EFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDN--PKWLPEIDRYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred EEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCC--cccHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 3457899999876655542 22223444454432 1123444445556799776 3 45543
No 219
>PF13728 TraF: F plasmid transfer operon protein
Probab=36.92 E-value=1.6e+02 Score=21.68 Aligned_cols=55 Identities=13% Similarity=0.033 Sum_probs=31.6
Q ss_pred eecccCCCchhHH----HHHHHHHcCCcceEEEccCCC----CC-CCChhHHhhCCCCccceEE
Q 029374 3 KLFSYWRSSCSHR----VRIGLNLKGLEYEYKAVNLVK----GE-QFSPDFLKINPIGYVPALV 57 (194)
Q Consensus 3 ~Ly~~~~~p~~~~----v~~~L~~~gi~~~~~~v~~~~----~~-~~~~~~~~~~p~~~~P~L~ 57 (194)
-+++...||+|+. ++.+....|+++..+.+|=.. .. .......+...-..+|+|.
T Consensus 125 ~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~ 188 (215)
T PF13728_consen 125 FFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALF 188 (215)
T ss_pred EEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEE
Confidence 4566789999976 555556788876666655110 00 1122333233336889876
No 220
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=36.71 E-value=43 Score=21.09 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=27.6
Q ss_pred ecccCCCchhHHHHHHHHH-----cCCcceEEEccCCCCCCCChhHHhhCCCCccceEE
Q 029374 4 LFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (194)
Q Consensus 4 Ly~~~~~p~~~~v~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (194)
.|+.++|+.|++..-.++. .++. ...++.. ...+...+...-..+|++.
T Consensus 24 ~F~a~WC~~C~~~~p~l~~la~~~~~~~--~~~vd~~---~~~~~l~~~~~V~~~PT~~ 77 (100)
T cd02999 24 LFYASWCPFSASFRPHFNALSSMFPQIR--HLAIEES---SIKPSLLSRYGVVGFPTIL 77 (100)
T ss_pred EEECCCCHHHHhHhHHHHHHHHHhccCc--eEEEECC---CCCHHHHHhcCCeecCEEE
Confidence 4457899999887755543 3332 3334322 1234444444456789876
No 221
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=35.74 E-value=92 Score=20.41 Aligned_cols=58 Identities=16% Similarity=-0.022 Sum_probs=36.3
Q ss_pred ecccC--CCchhHHHHHHHHHcCCcc----eEEEccCCCCCCCChhHHhhCCCCccceEE--eCCeeeee
Q 029374 4 LFSYW--RSSCSHRVRIGLNLKGLEY----EYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVVSD 65 (194)
Q Consensus 4 Ly~~~--~~p~~~~v~~~L~~~gi~~----~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~~~e 65 (194)
+|+.. .||-|..+.-.|++.--.| ....++..+ .++......-..+|+|. .+|..+..
T Consensus 33 ~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~----~~~la~~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 33 LLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD----EQALAARFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred EecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC----CHHHHHHcCCCcCCEEEEEECCEEEEE
Confidence 44455 4999999887775433333 333455442 45666666678899998 57776543
No 222
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=35.50 E-value=1.3e+02 Score=19.92 Aligned_cols=63 Identities=6% Similarity=-0.086 Sum_probs=28.5
Q ss_pred ccCCCchhHHHHHHHH----HcCCcceEEEccCCC-C--CCCChhHHh--hCCCCccceEE--eCCeeeeeHHH
Q 029374 6 SYWRSSCSHRVRIGLN----LKGLEYEYKAVNLVK-G--EQFSPDFLK--INPIGYVPALV--DGDFVVSDSFA 68 (194)
Q Consensus 6 ~~~~~p~~~~v~~~L~----~~gi~~~~~~v~~~~-~--~~~~~~~~~--~~p~~~~P~L~--~~~~~~~es~a 68 (194)
+..+||.|.++.-.++ ...-....+.+...+ . ....-.|.. .-....+|+|. .++..+.|..-
T Consensus 34 g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e~ 107 (119)
T PF06110_consen 34 GQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVEEEC 107 (119)
T ss_dssp S-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCccchhhh
Confidence 4578999988765543 321123333333221 1 111224443 23346799998 45566666543
No 223
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.50 E-value=52 Score=19.96 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=21.2
Q ss_pred CCchhHHHHHHHHHcCCcceEEEcc
Q 029374 9 RSSCSHRVRIGLNLKGLEYEYKAVN 33 (194)
Q Consensus 9 ~~p~~~~v~~~L~~~gi~~~~~~v~ 33 (194)
--+|++|+.-.++..|++|+..+-.
T Consensus 14 evGF~rk~L~I~E~~~is~Eh~PSG 38 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYEHMPSG 38 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEeeecCC
Confidence 3579999999999999999976544
No 224
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=34.97 E-value=1.1e+02 Score=18.82 Aligned_cols=50 Identities=10% Similarity=0.099 Sum_probs=29.0
Q ss_pred ecccCCCchhHHHHHHHHH-----cCCcceEEEccCCCCCCCChhHHhhCCCCccceEE
Q 029374 4 LFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (194)
Q Consensus 4 Ly~~~~~p~~~~v~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (194)
.|+.++|+.|....-.++. .+..+....++... .+...+...-..+|++.
T Consensus 22 ~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~----~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 22 EFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ----EPGLSGRFFVTALPTIY 76 (101)
T ss_pred EEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC----CHhHHHHcCCcccCEEE
Confidence 3457899999876655432 23334445555432 33444444567889887
No 225
>PRK10996 thioredoxin 2; Provisional
Probab=34.74 E-value=1.4e+02 Score=20.03 Aligned_cols=57 Identities=12% Similarity=-0.000 Sum_probs=34.5
Q ss_pred eecccCCCchhHHHHHHHHH----cCCcceEEEccCCCCCCCChhHHhhCCCCccceEE--eCCeee
Q 029374 3 KLFSYWRSSCSHRVRIGLNL----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (194)
Q Consensus 3 ~Ly~~~~~p~~~~v~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~~ 63 (194)
..|+..+|+.|....-.++. .+-.+....++.. ..+++.+...-..+|++. .+|..+
T Consensus 57 v~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~----~~~~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 57 IDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE----AERELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC----CCHHHHHhcCCCccCEEEEEECCEEE
Confidence 34557899999876544432 2223445555543 245666555667899887 566644
No 226
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=34.48 E-value=1.2e+02 Score=19.05 Aligned_cols=54 Identities=15% Similarity=0.070 Sum_probs=31.4
Q ss_pred ecccCCCchhHHHHHHHHHcC------C----cceEEEccCCCCCCCChhHHhhCCCCccceEE--eCCe
Q 029374 4 LFSYWRSSCSHRVRIGLNLKG------L----EYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDF 61 (194)
Q Consensus 4 Ly~~~~~p~~~~v~~~L~~~g------i----~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~ 61 (194)
.|+.++|+.|++..-.++... . .+....++... .++..+...-..+|++. .+|.
T Consensus 24 ~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~----~~~l~~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 24 NFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK----ESDIADRYRINKYPTLKLFRNGM 89 (108)
T ss_pred EEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC----CHHHHHhCCCCcCCEEEEEeCCc
Confidence 445789999988766664211 1 13344455432 34555555667889887 4554
No 227
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=34.42 E-value=1e+02 Score=19.41 Aligned_cols=59 Identities=14% Similarity=0.054 Sum_probs=31.6
Q ss_pred ecccCCCchhHHHHHHHHHcC---CcceEEEccCCCCCCCChhHHhhCCCCccceEE--eCCeee
Q 029374 4 LFSYWRSSCSHRVRIGLNLKG---LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (194)
Q Consensus 4 Ly~~~~~p~~~~v~~~L~~~g---i~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~~ 63 (194)
.|+..+|+.|.+..-.++... -......++.... ....++.+...-..+|++. .+|..+
T Consensus 21 ~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~-~~~~~l~~~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 21 EFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEN-DSTMELCRREKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCC-hHHHHHHHHcCCCcCCEEEEEeCCeEE
Confidence 345789999987665554311 1233444554321 1112455555567799877 466543
No 228
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=34.39 E-value=1.5e+02 Score=25.11 Aligned_cols=71 Identities=13% Similarity=0.105 Sum_probs=45.5
Q ss_pred cccCCCchhHH-------HHHHHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEE--eCCee------eeeHHHH
Q 029374 5 FSYWRSSCSHR-------VRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFV------VSDSFAI 69 (194)
Q Consensus 5 y~~~~~p~~~~-------v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~------~~es~aI 69 (194)
||.+||..|.+ +--.|.+.|-+.....|+-.. ..++....--...|+|. .+|.. .-+...|
T Consensus 49 FYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~----~~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~adgI 124 (493)
T KOG0190|consen 49 FYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATE----ESDLASKYEVRGYPTLKIFRNGRSAQDYNGPREADGI 124 (493)
T ss_pred EEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecch----hhhhHhhhcCCCCCeEEEEecCCcceeccCcccHHHH
Confidence 44789988865 334455555677777787543 23333334456788887 35543 3467889
Q ss_pred HHHHHhhCCC
Q 029374 70 LMYLEEKYPQ 79 (194)
Q Consensus 70 ~~~L~~~~~~ 79 (194)
..||-++.+.
T Consensus 125 v~wl~kq~gP 134 (493)
T KOG0190|consen 125 VKWLKKQSGP 134 (493)
T ss_pred HHHHHhccCC
Confidence 9999998763
No 229
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=34.25 E-value=1.1e+02 Score=22.91 Aligned_cols=21 Identities=10% Similarity=0.248 Sum_probs=16.8
Q ss_pred eeecccCCCchhHHHHHHHHH
Q 029374 2 LKLFSYWRSSCSHRVRIGLNL 22 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~ 22 (194)
+.+|..+.||||++..--+..
T Consensus 111 I~vFtDp~CpyCkkl~~~l~~ 131 (232)
T PRK10877 111 ITVFTDITCGYCHKLHEQMKD 131 (232)
T ss_pred EEEEECCCChHHHHHHHHHHH
Confidence 457788999999998777654
No 230
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=33.50 E-value=1.1e+02 Score=18.27 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=22.5
Q ss_pred eHHHHHHHHHhhCCC--CCCCCCCHHHHHHHHHHHHHHhc
Q 029374 65 DSFAILMYLEEKYPQ--PPLLPSDLKRKAINYQAANIVSS 102 (194)
Q Consensus 65 es~aI~~~L~~~~~~--~~l~p~~~~~~~~~~~~~~~~~~ 102 (194)
|..-|+.++...||. ..+-+.+. +..++.|...+.+
T Consensus 5 E~~~ll~~I~~aYP~~~~~f~~~~~--k~~v~~W~~~L~d 42 (71)
T PF11417_consen 5 ETAKLLKLIKAAYPQWAGNFKPTDS--KETVDLWYDMLKD 42 (71)
T ss_dssp HHHHHHHHHHHHST---TT---STH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCcchhccchhhH--HHHHHHHHHHHHh
Confidence 567789999999983 34444442 4567777777654
No 231
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=33.36 E-value=22 Score=23.91 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=25.7
Q ss_pred ecccCCCchhHHHHHHH----HHc-CCcceEEEccCCCCCCCChhHHhhCCCCccceEE
Q 029374 4 LFSYWRSSCSHRVRIGL----NLK-GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (194)
Q Consensus 4 Ly~~~~~p~~~~v~~~L----~~~-gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (194)
++.-.+||.|.+.--.+ +.. +++++....+-.. ...+.|+. +....+|+++
T Consensus 47 vi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~--el~~~~lt-~g~~~IP~~I 102 (129)
T PF14595_consen 47 VITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENK--ELMDQYLT-NGGRSIPTFI 102 (129)
T ss_dssp EE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHH--HHTTTTTT--SS--SSEEE
T ss_pred EEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCh--hHHHHHHh-CCCeecCEEE
Confidence 45568999997744333 444 6666665554211 22445555 6778999998
No 232
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.11 E-value=2.4e+02 Score=22.17 Aligned_cols=74 Identities=14% Similarity=0.084 Sum_probs=49.3
Q ss_pred eeecccCCCchhHHHHHHHH----HcCCcceEEEccCCCCCCCChhHHhhCCCCccceEE--eCCeeee------eHHHH
Q 029374 2 LKLFSYWRSSCSHRVRIGLN----LKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVVS------DSFAI 69 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~----~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~~~------es~aI 69 (194)
+.+|+.++|+.|....=.|+ +.+=.|....|+... .+.....+.-..+|+.+ -+|..+. .-+.|
T Consensus 47 lV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~----~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesql 122 (304)
T COG3118 47 LVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA----EPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQL 122 (304)
T ss_pred EEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCc----chhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHH
Confidence 34566788888877655554 333346777777653 56677777788999876 4665543 33678
Q ss_pred HHHHHhhCCC
Q 029374 70 LMYLEEKYPQ 79 (194)
Q Consensus 70 ~~~L~~~~~~ 79 (194)
-++|++..+.
T Consensus 123 r~~ld~~~~~ 132 (304)
T COG3118 123 RQFLDKVLPA 132 (304)
T ss_pred HHHHHHhcCh
Confidence 8899887663
No 233
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=32.40 E-value=78 Score=16.26 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=20.3
Q ss_pred CCCccceEEeCCeeeeeHHHHHHHHH
Q 029374 49 PIGYVPALVDGDFVVSDSFAILMYLE 74 (194)
Q Consensus 49 p~~~~P~L~~~~~~~~es~aI~~~L~ 74 (194)
-.|.+|....++..+.....|.+|+.
T Consensus 23 ~~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 23 HEGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred HcCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 35678887777888888888888875
No 234
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=31.94 E-value=2.3e+02 Score=21.57 Aligned_cols=66 Identities=17% Similarity=-0.012 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHh
Q 029374 66 SFAILMYLEEKYPQPPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLL 144 (194)
Q Consensus 66 s~aI~~~L~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L 144 (194)
-..|-..+.+... ...-|+|++..+.|...+..--...+-..... -..+.+.+++..-++.||..|
T Consensus 6 ~qLI~~lf~RL~~-ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~v------------lvQE~AL~~a~~ri~eLe~ql 71 (247)
T PF09849_consen 6 RQLIDDLFSRLKQ-AEAQPRDPEAEALIAQALARQPDAPYYLAQTV------------LVQEQALKQAQARIQELEAQL 71 (247)
T ss_pred HHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHHHhCCchHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555433 22348999888888877765443333221111 235667777777888888887
No 235
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=31.86 E-value=41 Score=21.28 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=19.3
Q ss_pred eeecccCCCchhHHHHHHHHH-----cCC--cceEEEccCC
Q 029374 2 LKLFSYWRSSCSHRVRIGLNL-----KGL--EYEYKAVNLV 35 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~-----~gi--~~~~~~v~~~ 35 (194)
+.+|+.++||+|++..-.+.. ..+ .+..+.++..
T Consensus 9 v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (112)
T PF13098_consen 9 VVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNID 49 (112)
T ss_dssp EEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecC
Confidence 345678999999987655542 111 3556666654
No 236
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=31.03 E-value=62 Score=22.79 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=22.4
Q ss_pred eeecccCCCchhHHH----HHHHHHcCCcceEEEccC
Q 029374 2 LKLFSYWRSSCSHRV----RIGLNLKGLEYEYKAVNL 34 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v----~~~L~~~gi~~~~~~v~~ 34 (194)
+++|+...||||.-. +-+....++.++.+.+.+
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~l 37 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPILL 37 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeeeH
Confidence 468889999999764 333445677777666643
No 237
>PTZ00102 disulphide isomerase; Provisional
Probab=30.93 E-value=3.1e+02 Score=22.65 Aligned_cols=73 Identities=12% Similarity=0.051 Sum_probs=42.3
Q ss_pred eeecccCCCchhHHHHHHH-------HHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEE--eCCeee-----eeHH
Q 029374 2 LKLFSYWRSSCSHRVRIGL-------NLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV-----SDSF 67 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L-------~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~~-----~es~ 67 (194)
+..|+.++|++|.+..-.+ ...+-++....++... .........-..+|++. .+|..+ ....
T Consensus 53 lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~----~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~ 128 (477)
T PTZ00102 53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE----EMELAQEFGVRGYPTIKFFNKGNPVNYSGGRTAD 128 (477)
T ss_pred EEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC----CHHHHHhcCCCcccEEEEEECCceEEecCCCCHH
Confidence 3455679999998764322 2223345555566442 33444444456789886 444332 2456
Q ss_pred HHHHHHHhhCC
Q 029374 68 AILMYLEEKYP 78 (194)
Q Consensus 68 aI~~~L~~~~~ 78 (194)
.|..++.+..+
T Consensus 129 ~l~~~l~~~~~ 139 (477)
T PTZ00102 129 GIVSWIKKLTG 139 (477)
T ss_pred HHHHHHHHhhC
Confidence 78888888654
No 238
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=30.11 E-value=1.2e+02 Score=17.84 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=21.3
Q ss_pred ccceEEeCCeeeeeHHHHHHHHHhhCC
Q 029374 52 YVPALVDGDFVVSDSFAILMYLEEKYP 78 (194)
Q Consensus 52 ~~P~L~~~~~~~~es~aI~~~L~~~~~ 78 (194)
+=|++..+| ...|-.+|.+||.+...
T Consensus 15 ~dPVi~~~G-~tyer~~I~~~l~~~~~ 40 (73)
T PF04564_consen 15 RDPVILPSG-HTYERSAIERWLEQNGG 40 (73)
T ss_dssp SSEEEETTS-EEEEHHHHHHHHCTTSS
T ss_pred hCceeCCcC-CEEcHHHHHHHHHcCCC
Confidence 458988888 78999999999999433
No 239
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=29.55 E-value=1.3e+02 Score=18.08 Aligned_cols=54 Identities=15% Similarity=0.038 Sum_probs=31.2
Q ss_pred ecccCCCchhHHHHHHHHH----cCCcceEEEccCCCCCCCChhHHhhCCCCccceEE--eCCe
Q 029374 4 LFSYWRSSCSHRVRIGLNL----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDF 61 (194)
Q Consensus 4 Ly~~~~~p~~~~v~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~ 61 (194)
.++.++|+.|....-.++. .+-.+....++.. ..+.+.....-..+|++. .+|.
T Consensus 20 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 20 DFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVD----ENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred EEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECC----CCHHHHHHcCCCcCCEEEEEeCCc
Confidence 4457889999887655543 2222445555543 234444444556899876 4554
No 240
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=28.63 E-value=1.4e+02 Score=18.15 Aligned_cols=55 Identities=9% Similarity=0.021 Sum_probs=30.4
Q ss_pred eecccCCCchhHHHHHHH-----HHcC--CcceEEEccCCCCCCCChhHHhhCCCCccceEE--eCCe
Q 029374 3 KLFSYWRSSCSHRVRIGL-----NLKG--LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDF 61 (194)
Q Consensus 3 ~Ly~~~~~p~~~~v~~~L-----~~~g--i~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~ 61 (194)
..|+.++|+.|+...-.+ +..+ -.+....++... .+...+...-..+|++. .+|.
T Consensus 21 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~ 84 (102)
T cd03005 21 VKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ----HRELCSEFQVRGYPTLLLFKDGE 84 (102)
T ss_pred EEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC----ChhhHhhcCCCcCCEEEEEeCCC
Confidence 345578999998764433 2233 234555565442 23333344456789876 4443
No 241
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=28.21 E-value=80 Score=19.26 Aligned_cols=52 Identities=13% Similarity=0.046 Sum_probs=29.4
Q ss_pred eeecccCCCchhHHHHHHHHH-----cCC-cceEEEccCCCCCCCChhHHhhCCCCccceEE
Q 029374 2 LKLFSYWRSSCSHRVRIGLNL-----KGL-EYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~-----~gi-~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (194)
+..|+.++|+.|+...-.++. .+- .+....++.. ..+..........+|++.
T Consensus 17 ~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~~~i~~~P~~~ 74 (102)
T TIGR01126 17 LVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT----AEKDLASRFGVSGFPTIK 74 (102)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc----chHHHHHhCCCCcCCEEE
Confidence 456678999999875444432 221 1334444432 234554445567799875
No 242
>PF12728 HTH_17: Helix-turn-helix domain
Probab=27.88 E-value=1.1e+02 Score=16.34 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=22.7
Q ss_pred CCCccceEEeCCeeeeeHHHHHHHHHhh
Q 029374 49 PIGYVPALVDGDFVVSDSFAILMYLEEK 76 (194)
Q Consensus 49 p~~~~P~L~~~~~~~~es~aI~~~L~~~ 76 (194)
-.|.+|....++.....-..|.+|+.++
T Consensus 23 ~~g~i~~~~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 23 RQGKIPPFKIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred HcCCCCeEEeCCEEEEeHHHHHHHHHhC
Confidence 4568888888888888999999988764
No 243
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=27.66 E-value=49 Score=24.79 Aligned_cols=57 Identities=14% Similarity=0.015 Sum_probs=36.9
Q ss_pred HHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeee--eeHHHHHHHHHh
Q 029374 19 GLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVV--SDSFAILMYLEE 75 (194)
Q Consensus 19 ~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~--~es~aI~~~L~~ 75 (194)
.++..|++++...+.+.+-....+-|+.-+..+-+|+-..++..+ .....|.+.|-+
T Consensus 196 ~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gv~pV~~i~~~~~~~~~~~~~~~~l~~ 254 (256)
T cd00449 196 LAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEIDGRGIGDGKPGPVTRKLRE 254 (256)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEEEEccccceEEEEEEECCeecCCCCCCHHHHHHHH
Confidence 456789999988888755333344555555568899998776665 234455555543
No 244
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=26.97 E-value=59 Score=22.79 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=23.6
Q ss_pred CCchhHHHHHHHHHcCCcceEEEccCCC
Q 029374 9 RSSCSHRVRIGLNLKGLEYEYKAVNLVK 36 (194)
Q Consensus 9 ~~p~~~~v~~~L~~~gi~~~~~~v~~~~ 36 (194)
.-+.++++...|+..|++|+......-+
T Consensus 10 D~~~~~~a~~~L~~~gi~~dv~V~SaHR 37 (156)
T TIGR01162 10 DLPTMKKAADILEEFGIPYELRVVSAHR 37 (156)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEECccc
Confidence 3467899999999999999988887654
No 245
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=26.90 E-value=65 Score=24.43 Aligned_cols=57 Identities=19% Similarity=0.050 Sum_probs=37.7
Q ss_pred HHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeeeeHHHHHHHHHhh
Q 029374 19 GLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (194)
Q Consensus 19 ~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~es~aI~~~L~~~ 76 (194)
.++..|++++...+.+.+-....+-|+.-+..+-+|+-..|+..+. +..+.+.|.+.
T Consensus 208 ~~~~~g~~v~e~~i~~~dL~~adevfltns~~gi~pV~~id~~~~~-~g~~~~~l~~~ 264 (268)
T PRK06092 208 LLAQSGYPVVEVDASLEELLQADEVFICNSLMPVWPVRAIGETSYS-SGTLTRYLQPL 264 (268)
T ss_pred HHHHcCCeEEEEECCHHHHhhCCEEEEeCCcceEEEEEEECCEEcc-chHHHHHHHHH
Confidence 4567799999998887653333445555555688999997776653 34566655444
No 246
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=26.74 E-value=1.7e+02 Score=20.77 Aligned_cols=57 Identities=9% Similarity=-0.009 Sum_probs=32.4
Q ss_pred cccCCCchhHHHHHHHH---HcCCcceEEEccCCCCCCCChhHHhhCCCCccceEE--eCCeeeeeH
Q 029374 5 FSYWRSSCSHRVRIGLN---LKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVVSDS 66 (194)
Q Consensus 5 y~~~~~p~~~~v~~~L~---~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~~~es 66 (194)
++.++|+.|..+--.|+ ..--......|+... . ......+-..+|++. -+|..+..-
T Consensus 90 Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~----~-~l~~~f~v~~vPTlllyk~G~~v~~~ 151 (175)
T cd02987 90 IYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA----T-GASDEFDTDALPALLVYKGGELIGNF 151 (175)
T ss_pred EECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc----h-hhHHhCCCCCCCEEEEEECCEEEEEE
Confidence 45788999986544332 221123445555432 1 344555667899887 477765443
No 247
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=26.45 E-value=3.9e+02 Score=23.14 Aligned_cols=52 Identities=6% Similarity=-0.023 Sum_probs=30.0
Q ss_pred cccCCCchhHHHHHH-H------HHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEE
Q 029374 5 FSYWRSSCSHRVRIG-L------NLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (194)
Q Consensus 5 y~~~~~p~~~~v~~~-L------~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (194)
++..+|+.|+...-. + +..+ .+....+|..+.+....++.+......+|++.
T Consensus 481 F~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~ 539 (571)
T PRK00293 481 LYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPTIL 539 (571)
T ss_pred EECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCEEE
Confidence 447899999765322 1 1112 35666677654332334555555566789887
No 248
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=25.72 E-value=34 Score=26.29 Aligned_cols=57 Identities=9% Similarity=-0.147 Sum_probs=36.5
Q ss_pred HHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeee----eeHHHHHHHHHh
Q 029374 19 GLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVV----SDSFAILMYLEE 75 (194)
Q Consensus 19 ~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~----~es~aI~~~L~~ 75 (194)
+++..|++++...+.+.+-....+-|+.-+..+-+|+-..++..+ .....|.+.|.+
T Consensus 211 ~~~~~Gi~v~e~~i~~~~l~~ade~f~~ns~~gi~pV~~i~~~~~~~~~~~~gp~~~~l~~ 271 (279)
T cd01557 211 LARDLGIKVEERPITRDELYEADEVFATGTAAVVTPVGEIDYRGKEPGEGEVGPVTKKLYD 271 (279)
T ss_pred HHHHcCCeEEEEeCCHHHHhhCCEEEEecceeEEEEEEEEccccccCCCCCCCHHHHHHHH
Confidence 567789999998888765333344555555668889998766554 233445444443
No 249
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=25.70 E-value=98 Score=19.97 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=34.6
Q ss_pred cccCCCchhHHHHHHHHHcCCcce---EEEccCCCCCCCChhHHhhCCCCccceEE--eCCeeeee
Q 029374 5 FSYWRSSCSHRVRIGLNLKGLEYE---YKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVVSD 65 (194)
Q Consensus 5 y~~~~~p~~~~v~~~L~~~gi~~~---~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~~~e 65 (194)
|+..+|+.|..+.=.++..-..|. ...++... ..+......-..+|+++ -+|..+.+
T Consensus 28 F~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde----~~~~~~~~~V~~~PTf~f~k~g~~~~~ 89 (106)
T KOG0907|consen 28 FYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE----LEEVAKEFNVKAMPTFVFYKGGEEVDE 89 (106)
T ss_pred EECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc----CHhHHHhcCceEeeEEEEEECCEEEEE
Confidence 457899999887766654433332 33344332 55565555667899988 46665443
No 250
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=24.49 E-value=1.6e+02 Score=17.44 Aligned_cols=52 Identities=10% Similarity=-0.054 Sum_probs=31.9
Q ss_pred eeecccCCCchhHHHHHHHHH----c--CCcceEEEccCCCCCCCChhHHhhCCCCccceEE
Q 029374 2 LKLFSYWRSSCSHRVRIGLNL----K--GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~----~--gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (194)
+.+|+..+|++|....-.++. . +-.+....++... ...+.....-..+|++.
T Consensus 19 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02961 19 LVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA----NNDLCSEYGVRGYPTIK 76 (101)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc----hHHHHHhCCCCCCCEEE
Confidence 345667889999887766643 2 2334555555432 34555555557889886
No 251
>PRK13356 aminotransferase; Provisional
Probab=23.65 E-value=56 Score=25.12 Aligned_cols=45 Identities=16% Similarity=-0.048 Sum_probs=32.2
Q ss_pred HHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeee
Q 029374 19 GLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVV 63 (194)
Q Consensus 19 ~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~ 63 (194)
+++..|++++...+.+.+-....+-|+.-+..+-+|+-..|+..+
T Consensus 221 ~a~~~gi~v~e~~i~~~eL~~adevfltns~~gi~PV~~id~~~~ 265 (286)
T PRK13356 221 LLREDGVTVVETTLTYEDFLEADEVFSTGNYSKVVPVTRFDDRSL 265 (286)
T ss_pred HHHHcCCeEEEEecCHHHHHhcCceEEecChheEEEEEEECCEEe
Confidence 567889999999888754333345566556668889999777665
No 252
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=23.37 E-value=1.1e+02 Score=20.46 Aligned_cols=55 Identities=18% Similarity=0.049 Sum_probs=27.4
Q ss_pred eecccCCCchhHHHHHHHHH-----cCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeC
Q 029374 3 KLFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG 59 (194)
Q Consensus 3 ~Ly~~~~~p~~~~v~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~ 59 (194)
.+|...+||.|.+-.-.+.. ++-.++.+.+....... ..++.+. -...+|++.|.
T Consensus 34 ~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~-~~~~~~~-~~~~~~~~~D~ 93 (146)
T PF08534_consen 34 NFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPP-VREFLKK-YGINFPVLSDP 93 (146)
T ss_dssp EEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHH-HHHHHHH-TTTTSEEEEET
T ss_pred EEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHH-HHHHHHh-hCCCceEEech
Confidence 34443489999876544432 23334554454433212 3344444 23356666653
No 253
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=22.82 E-value=1.3e+02 Score=18.40 Aligned_cols=53 Identities=13% Similarity=-0.008 Sum_probs=30.2
Q ss_pred eeecccCCCchhHHHHHHHHH----cC--CcceEEEccCCCCCCCChhHHhhCCCCccceEE
Q 029374 2 LKLFSYWRSSCSHRVRIGLNL----KG--LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~----~g--i~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (194)
+..|+..+|+.|+...-.++. .. -.+....++... ..+.+.....-..+|++.
T Consensus 22 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~---~~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 22 LVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE---ANKDLAKKYGVSGFPTLK 80 (105)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC---cchhhHHhCCCCCcCEEE
Confidence 345668899999765444432 11 235555566442 134454445567899886
No 254
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=22.72 E-value=53 Score=20.24 Aligned_cols=51 Identities=12% Similarity=0.001 Sum_probs=27.6
Q ss_pred eeecccCCCchhHHHHHHHHH-----cC-CcceEEEccCCCCCCCChhHHhhCCCCccceEE
Q 029374 2 LKLFSYWRSSCSHRVRIGLNL-----KG-LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~~-----~g-i~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (194)
+.+|+.++|+.|+...-.++. .+ ..+....++... . +.........+|++.
T Consensus 22 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~----~-~~~~~~~~~~~Pt~~ 78 (104)
T cd02995 22 LVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA----N-DVPSEFVVDGFPTIL 78 (104)
T ss_pred EEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc----h-hhhhhccCCCCCEEE
Confidence 345667999999876555542 22 224445555432 1 121111226889887
No 255
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=22.64 E-value=1.4e+02 Score=16.88 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhccCCCcccCCCc-hhhhhHHHhh
Q 029374 135 KGFAALEKLLKDYAGKYATGDEV-FLVSFHCFIY 167 (194)
Q Consensus 135 ~~l~~le~~L~~~~~~~l~G~~~-t~aD~~l~~~ 167 (194)
...+.+.+.+.. +.|-.|+++ |.++++--.-
T Consensus 4 ~i~~~l~~~I~~--g~~~~g~~lps~~~la~~~~ 35 (64)
T PF00392_consen 4 QIYDQLRQAILS--GRLPPGDRLPSERELAERYG 35 (64)
T ss_dssp HHHHHHHHHHHT--TSS-TTSBE--HHHHHHHHT
T ss_pred HHHHHHHHHHHc--CCCCCCCEeCCHHHHHHHhc
Confidence 455666777776 889999998 9998865433
No 256
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=22.32 E-value=87 Score=22.62 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=18.2
Q ss_pred CCeeeeeHHHHHHHHHhhCC
Q 029374 59 GDFVVSDSFAILMYLEEKYP 78 (194)
Q Consensus 59 ~~~~~~es~aI~~~L~~~~~ 78 (194)
.+..|+||..|-+|+.++|+
T Consensus 154 ad~lIaDs~~I~~y~~~~y~ 173 (185)
T PF09314_consen 154 ADRLIADSKGIQDYIKERYG 173 (185)
T ss_pred CCEEEEcCHHHHHHHHHHcC
Confidence 55789999999999999998
No 257
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=22.29 E-value=60 Score=25.28 Aligned_cols=46 Identities=9% Similarity=-0.108 Sum_probs=32.8
Q ss_pred HHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeeee
Q 029374 19 GLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVS 64 (194)
Q Consensus 19 ~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~~ 64 (194)
+++..|++++...+.+.+-....+-|+.-+..+-+|+-..|+..+.
T Consensus 228 ~~~~~g~~v~e~~i~~~eL~~AdevfltnS~~gi~PV~~id~~~~~ 273 (306)
T PRK06606 228 LAKDLGIEVIERRITRDELYIADEVFFTGTAAEVTPIREVDGRQIG 273 (306)
T ss_pred HHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEEEEEEECcEECC
Confidence 5678899999998887653333455666566688999997776653
No 258
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=22.10 E-value=1.8e+02 Score=18.93 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=28.9
Q ss_pred eecccCCCchhHHHHHHHHHcCCc----ceEEEccCCCCCCCChhHH-hhCCCCccceEE
Q 029374 3 KLFSYWRSSCSHRVRIGLNLKGLE----YEYKAVNLVKGEQFSPDFL-KINPIGYVPALV 57 (194)
Q Consensus 3 ~Ly~~~~~p~~~~v~~~L~~~gi~----~~~~~v~~~~~~~~~~~~~-~~~p~~~~P~L~ 57 (194)
..|+.++|+.|+...-.+++..-. .....|+... ..... ...--..+|+|.
T Consensus 34 V~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~----~~~l~~~~~~I~~~PTl~ 89 (113)
T cd03006 34 VMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW----PQGKCRKQKHFFYFPVIH 89 (113)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC----ChHHHHHhcCCcccCEEE
Confidence 345689999998877666543322 3345555432 23333 223335789887
No 259
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=21.90 E-value=1.5e+02 Score=19.11 Aligned_cols=24 Identities=13% Similarity=-0.100 Sum_probs=19.1
Q ss_pred cCCCchhHHHHHHHHHcCCcceEE
Q 029374 7 YWRSSCSHRVRIGLNLKGLEYEYK 30 (194)
Q Consensus 7 ~~~~p~~~~v~~~L~~~gi~~~~~ 30 (194)
...+|...-++.+.+++|||++..
T Consensus 63 ~~~~pd~~Hl~~LA~ekgVpVe~~ 86 (100)
T PF15608_consen 63 DPDDPDLAHLLLLAEEKGVPVEVY 86 (100)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEe
Confidence 455678888889999999998765
No 260
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=21.76 E-value=65 Score=24.87 Aligned_cols=45 Identities=18% Similarity=0.150 Sum_probs=32.4
Q ss_pred HHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeee
Q 029374 19 GLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVV 63 (194)
Q Consensus 19 ~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~ 63 (194)
+++..|++++...+.+.+-....+-|+.-+..+-+|+-..++..+
T Consensus 225 ~a~~~g~~v~e~~i~~~eL~~adevfltnS~~gi~PV~~i~~~~~ 269 (292)
T PRK07544 225 LAKRRGIEVVERHIMPEELAGFSECFLTGTAAEVTPVSEIGEYRF 269 (292)
T ss_pred HHHHcCCeEEEEecCHHHHhhcCceeecCccceEEEEEEEeeEEe
Confidence 556789999999888765333345666666678999999776655
No 261
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=21.73 E-value=1e+02 Score=21.49 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=20.4
Q ss_pred CCchhHHHHHHHHHcCCcceEEEccCC
Q 029374 9 RSSCSHRVRIGLNLKGLEYEYKAVNLV 35 (194)
Q Consensus 9 ~~p~~~~v~~~L~~~gi~~~~~~v~~~ 35 (194)
.-+.+++++-.|++.|++|+......-
T Consensus 12 D~~~~~~a~~~L~~~gi~~~~~V~saH 38 (150)
T PF00731_consen 12 DLPIAEEAAKTLEEFGIPYEVRVASAH 38 (150)
T ss_dssp GHHHHHHHHHHHHHTT-EEEEEE--TT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEecc
Confidence 457889999999999999998777654
No 262
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=21.52 E-value=2.2e+02 Score=17.90 Aligned_cols=52 Identities=8% Similarity=0.036 Sum_probs=29.1
Q ss_pred eecccCCCchhHHHHHHHHH-----cCCcceEEEccCCCCCCCChhHH-hhCCCCccceEE
Q 029374 3 KLFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFL-KINPIGYVPALV 57 (194)
Q Consensus 3 ~Ly~~~~~p~~~~v~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~-~~~p~~~~P~L~ 57 (194)
..|+.++|+.|.+..-.++. .+-.+....++... ....+. +...-..+|++.
T Consensus 26 v~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~---~~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 26 VVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG---EQREFAKEELQLKSFPTIL 83 (109)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc---cchhhHHhhcCCCcCCEEE
Confidence 45568999999876554532 33334555555432 112222 234556799886
No 263
>PRK15371 effector protein YopJ; Provisional
Probab=21.51 E-value=2e+02 Score=22.43 Aligned_cols=41 Identities=10% Similarity=0.110 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCcccCCCchhhhhHHHhhhhc
Q 029374 127 IWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLVSFHCFIYVRS 170 (194)
Q Consensus 127 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~l~~~l~~ 170 (194)
+...+.+...++.||+.++. +.|+ -+.++.-|+-..+.+.-
T Consensus 22 ~~~~~~L~~~i~~le~~~~~--G~~~-~~~~~~~Di~~lp~lv~ 62 (287)
T PRK15371 22 EISNEELKNIITQLEDDIAD--GSWI-HKNYARTDLEVMPALVA 62 (287)
T ss_pred hhhHHHHHHHHHHHHHHHHc--CCCC-CchhHHhhHHhhHHHHH
Confidence 35667899999999999998 7777 44688899988888765
No 264
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=20.90 E-value=4.6e+02 Score=21.31 Aligned_cols=73 Identities=15% Similarity=0.112 Sum_probs=41.9
Q ss_pred eeecccCCCchhHHHHHHHH-------HcCCcceEEEccCCCCCCCChhHHhhCCCCccceEE--eCCee----e---ee
Q 029374 2 LKLFSYWRSSCSHRVRIGLN-------LKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFV----V---SD 65 (194)
Q Consensus 2 ~~Ly~~~~~p~~~~v~~~L~-------~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~----~---~e 65 (194)
+.+|+.++|+.|.+..-.+. ..+-.+....++... .++......-..+|++. .+|.. . .+
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~ 97 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE----EKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRD 97 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC----cHHHHHhCCCccccEEEEEeCCccceeEecCCCC
Confidence 34556789999987643332 223235555566442 34444444556789876 34432 1 24
Q ss_pred HHHHHHHHHhhCC
Q 029374 66 SFAILMYLEEKYP 78 (194)
Q Consensus 66 s~aI~~~L~~~~~ 78 (194)
...|..++.+..+
T Consensus 98 ~~~l~~~i~~~~~ 110 (462)
T TIGR01130 98 ADGIVKYMKKQSG 110 (462)
T ss_pred HHHHHHHHHHhcC
Confidence 5678888877654
No 265
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=20.08 E-value=72 Score=24.69 Aligned_cols=45 Identities=9% Similarity=-0.056 Sum_probs=32.5
Q ss_pred HHHHcCCcceEEEccCCCCCCCChhHHhhCCCCccceEEeCCeee
Q 029374 19 GLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVV 63 (194)
Q Consensus 19 ~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~~ 63 (194)
+++..|++++...+.+.+-....+-|+.-+..+-+|+-..|+..+
T Consensus 220 la~~~g~~v~e~~i~~~eL~~adevfltns~~gv~PV~~id~~~~ 264 (298)
T TIGR01122 220 LAKELGIEVVEQPISREELYTADEAFFTGTAAEITPIREVDGRKI 264 (298)
T ss_pred HHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEEEEEEECCEEC
Confidence 467889999999888765333345566666678899999777665
Done!