Query 029375
Match_columns 194
No_of_seqs 109 out of 239
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 11:55:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1688 Golgi proteins involve 100.0 1.2E-90 2.6E-95 576.9 15.7 182 3-184 5-187 (188)
2 PF03248 Rer1: Rer1 family; I 100.0 5.1E-88 1.1E-92 561.9 17.8 168 15-182 2-176 (176)
3 COG5249 RER1 Golgi protein inv 100.0 5.1E-76 1.1E-80 481.6 13.2 169 14-182 10-180 (180)
4 PF09973 DUF2208: Predicted me 87.7 1.1 2.4E-05 39.5 5.2 43 119-165 7-49 (233)
5 PF13260 DUF4051: Protein of u 76.2 3.5 7.6E-05 28.9 3.0 22 146-167 4-25 (54)
6 CHL00161 secY preprotein trans 53.6 20 0.00043 33.7 4.3 112 59-173 295-416 (417)
7 PF06703 SPC25: Microsomal sig 41.2 49 0.0011 26.6 4.3 41 120-160 33-78 (162)
8 PF12273 RCR: Chitin synthesis 32.8 20 0.00043 28.1 0.8 13 40-52 1-13 (130)
9 TIGR03097 PEP_O_lig_1 probable 32.6 90 0.002 28.6 5.1 59 108-166 69-130 (402)
10 PF12273 RCR: Chitin synthesis 32.2 64 0.0014 25.2 3.5 20 140-159 3-22 (130)
11 KOG2887 Membrane protein invol 31.0 1.5E+02 0.0033 25.5 5.8 25 141-165 80-106 (175)
12 PF07330 DUF1467: Protein of u 29.1 2.2E+02 0.0047 21.6 5.8 38 87-131 27-64 (85)
13 PRK14475 F0F1 ATP synthase sub 28.0 84 0.0018 25.5 3.7 13 131-144 3-15 (167)
14 PRK05886 yajC preprotein trans 24.4 71 0.0015 25.3 2.5 28 140-168 6-33 (109)
15 PRK06531 yajC preprotein trans 24.1 57 0.0012 25.9 1.9 30 137-168 2-31 (113)
16 COG0817 RuvC Holliday junction 22.6 48 0.001 28.0 1.3 43 125-167 83-125 (160)
17 PF14036 YlaH: YlaH-like prote 22.3 1.3E+02 0.0029 22.6 3.5 46 107-157 27-72 (77)
18 TIGR02920 acc_sec_Y2 accessory 21.8 1.5E+02 0.0033 27.7 4.6 109 59-172 274-394 (395)
19 PRK12907 secY preprotein trans 21.0 86 0.0019 29.9 2.8 110 59-173 309-430 (434)
No 1
>KOG1688 consensus Golgi proteins involved in ER retention (RER) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-90 Score=576.91 Aligned_cols=182 Identities=68% Similarity=1.229 Sum_probs=175.7
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHhhheeccEEEeehhHHHHHHHHHHhhcCC
Q 029375 3 GIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQGFYIISYGLGIYLLNLLIGFLSP 82 (194)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~~Rv~~~~g~yiVtY~LgIylLnlfi~FLtP 82 (194)
+.+++++++++|+.++.+++++.||+||||+|||+..||+++++++++|++||+..|||||||||||||+||+||+||||
T Consensus 5 ~~~~~~~~~a~~v~~~~~~~~~~yQ~yLDr~tPh~~~RW~~tl~l~~iy~iRi~~~~G~YII~Y~LgIYlLNlfiaFLtP 84 (188)
T KOG1688|consen 5 SSGEDSGGVASPVKRFFHELSQLYQHYLDRSTPHTAVRWVVTLVLLLIYCIRIYLVQGFYIITYALGIYLLNLFIAFLTP 84 (188)
T ss_pred ccCCCCCCcchHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 34567778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccc-cCCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHH
Q 029375 83 LVDPEIEV-ADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQI 161 (194)
Q Consensus 83 k~Dp~l~~-eeg~~lp~~~~~EFrPFiRRLPEFkFW~~~tra~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~lTm~rqI 161 (194)
|+|||+|| |||+.||++++||||||||||||||||+++|||+++|+.||||++||+|||||||++||++||++||||||
T Consensus 85 k~Dp~~~~~~dg~~Lpt~~~dEFrPFIRRLPEFKFW~s~~ka~~ia~~~tfF~~fdVPVFwPILl~Y~i~lf~ltmrRqI 164 (188)
T KOG1688|consen 85 KVDPELQDADDGPSLPTRKSDEFRPFIRRLPEFKFWYSSTKATLIALLCTFFSIFDVPVFWPILLMYFIVLFFLTMRRQI 164 (188)
T ss_pred CCCchhhcccCCCCCCCCCccccchHHHcCchhHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999964 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccccCCcCccccCCCCC
Q 029375 162 AHMIKYRYIPFNIGKQKYGGKKP 184 (194)
Q Consensus 162 ~HMiKyrYvPf~~gK~~y~~~~~ 184 (194)
+|||||||+||+.||++|+++++
T Consensus 165 ~HMiKyrY~Pf~~gK~~~~~~~~ 187 (188)
T KOG1688|consen 165 AHMIKYRYIPFDIGKKKYGSHSD 187 (188)
T ss_pred HHHHhhcccccccCchhhhcccc
Confidence 99999999999999999988764
No 2
>PF03248 Rer1: Rer1 family; InterPro: IPR004932 RER1 family proteins are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex [].; GO: 0016021 integral to membrane
Probab=100.00 E-value=5.1e-88 Score=561.89 Aligned_cols=168 Identities=65% Similarity=1.215 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHhhheeccEEEeehhHHHHHHHHHHhhcCCCCCccccc----
Q 029375 15 VSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQGFYIISYGLGIYLLNLLIGFLSPLVDPEIEV---- 90 (194)
Q Consensus 15 ~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~~Rv~~~~g~yiVtY~LgIylLnlfi~FLtPk~Dp~l~~---- 90 (194)
++++.++++++||++|||||||++.||+++++|+++|++||+..|||||||||||||+||+||+||||++||+++|
T Consensus 2 ~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~~Rv~~~~g~YiVtY~LgIylLnlfi~FltP~~Dp~l~~~~~~ 81 (176)
T PF03248_consen 2 VSRFFQKLKRTYQSYLDKSTPYTKYRWIAFLVLLFLFLLRVYYLQGWYIVTYALGIYLLNLFIAFLTPKFDPELEQDEED 81 (176)
T ss_pred HHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhcceeeehHHHHHHHHHHHHHHhCCcCcccccccccc
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred -cCCCCCCC--CCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029375 91 -ADGPLLPT--KGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKY 167 (194)
Q Consensus 91 -eeg~~lp~--~~~~EFrPFiRRLPEFkFW~~~tra~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~lTm~rqI~HMiKy 167 (194)
|||+.||+ +++||||||+|||||||||++||||+++|++||||++||||||||||++|||+||++||||||+|||||
T Consensus 82 ~~~g~~Lp~~~~~~~EFrPFiRRlPEFkFW~~~tka~~i~~~~tff~~fdiPVFWPiLl~Yfi~lf~~tm~~qI~hMiKy 161 (176)
T PF03248_consen 82 EEEGPELPTTNENDDEFRPFIRRLPEFKFWYSCTKATVISLFCTFFPFFDIPVFWPILLVYFIVLFVLTMKRQIKHMIKY 161 (176)
T ss_pred ccccccCCCCcccccccCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcCccccCCC
Q 029375 168 RYIPFNIGKQKYGGK 182 (194)
Q Consensus 168 rYvPf~~gK~~y~~~ 182 (194)
||||||+||++|++|
T Consensus 162 ~Y~Pf~~gK~~y~~~ 176 (176)
T PF03248_consen 162 RYVPFDFGKKKYGRK 176 (176)
T ss_pred CCCCccccchhccCC
Confidence 999999999999986
No 3
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=100.00 E-value=5.1e-76 Score=481.55 Aligned_cols=169 Identities=47% Similarity=0.902 Sum_probs=159.8
Q ss_pred hHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHhhheeccEEEeehhHHHHHHHHHHhhcCCCCCccccc--c
Q 029375 14 PVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQGFYIISYGLGIYLLNLLIGFLSPLVDPEIEV--A 91 (194)
Q Consensus 14 ~~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~~Rv~~~~g~yiVtY~LgIylLnlfi~FLtPk~Dp~l~~--e 91 (194)
.+.+..+.+++.||+||||.+||+..||+.+++|+.+|++||+..+|||+|||+||||+||+|++|||||+||+.|| |
T Consensus 10 n~~~k~n~~k~LyqhylDr~~P~~~~RW~i~ggL~~lf~iRI~~~~gwY~icY~LgiyLLn~flaFLTPKfdms~eq~e~ 89 (180)
T COG5249 10 NLITKMNDLKTLYQHYLDRLAPRPDVRWGITGGLFLLFCIRIWSTGGWYLICYCLGIYLLNAFLAFLTPKFDMSFEQIED 89 (180)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhCCCCcccHhhhcc
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999996 3
Q ss_pred CCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 029375 92 DGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIP 171 (194)
Q Consensus 92 eg~~lp~~~~~EFrPFiRRLPEFkFW~~~tra~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~lTm~rqI~HMiKyrYvP 171 (194)
|+.+..++.|+|||||||||||||||+++|||+++|++.|+|++||||||||||++|||+|+.+|||||||||+||||+|
T Consensus 90 d~eieeg~kd~EFrPFIRrLPEFkFWy~s~rat~~aLi~s~F~IfDvPVfwPILvvYfi~l~f~t~rRqIqHM~KYrY~P 169 (180)
T COG5249 90 DDEIEEGEKDNEFRPFIRRLPEFKFWYFSTRATGMALIGSYFGIFDVPVFWPILVVYFIFLVFYTARRQIQHMKKYRYNP 169 (180)
T ss_pred ccccccccccchhhHHHHcCchhHHHHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 44455557899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCccccCCC
Q 029375 172 FNIGKQKYGGK 182 (194)
Q Consensus 172 f~~gK~~y~~~ 182 (194)
||.||++|++.
T Consensus 170 fdigKkky~sh 180 (180)
T COG5249 170 FDIGKKKYKSH 180 (180)
T ss_pred hhhhhhhhccC
Confidence 99999999763
No 4
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=87.73 E-value=1.1 Score=39.54 Aligned_cols=43 Identities=23% Similarity=0.517 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 029375 119 SMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMI 165 (194)
Q Consensus 119 ~~tra~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~lTm~rqI~HMi 165 (194)
+.+-.+++|+++++++.. ||++.+.||++.+++||.-.+++|-
T Consensus 7 sq~~il~fa~Vla~~p~y----~~~~filYfiv~~~i~~~~~~Rs~r 49 (233)
T PF09973_consen 7 SQVSILLFAAVLAFFPQY----YFEVFILYFIVFFGIMIVMGIRSYR 49 (233)
T ss_pred HHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 455677889999988543 6899999999999999999888876
No 5
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=76.19 E-value=3.5 Score=28.86 Aligned_cols=22 Identities=45% Similarity=0.859 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 029375 146 LCYWIVLFVLTMRRQIAHMIKY 167 (194)
Q Consensus 146 l~Yfi~Lf~lTm~rqI~HMiKy 167 (194)
.-|||+|-++..-..+-||.+|
T Consensus 4 awywivli~lv~~gy~~hmkry 25 (54)
T PF13260_consen 4 AWYWIVLIVLVVVGYFCHMKRY 25 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888888888899999887
No 6
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=53.60 E-value=20 Score=33.73 Aligned_cols=112 Identities=14% Similarity=0.201 Sum_probs=59.5
Q ss_pred ccEEEeehhHHHHHHHHHHhhcCCCCCccccc----cCCCCCCCCCCC-CCCCcccC-CchhHHHHHHHHHHHHHHHHHh
Q 029375 59 QGFYIISYGLGIYLLNLLIGFLSPLVDPEIEV----ADGPLLPTKGSD-EFKPFIRR-LPEFKFWYSMTKAFCIAFVMTF 132 (194)
Q Consensus 59 ~g~yiVtY~LgIylLnlfi~FLtPk~Dp~l~~----eeg~~lp~~~~~-EFrPFiRR-LPEFkFW~~~tra~~ia~~~Tf 132 (194)
+.+|+++|.+-+.+++-|-.+++ +||+... +.|...|+-+.. +=.-+++| +|-..+|= +.-..++|.++.+
T Consensus 295 ~~~y~~~y~~lii~Fs~f~~~i~--~~p~~iA~~Lkk~g~~IpGvRpG~~T~~yL~~~i~~~t~~G-a~~l~~la~~p~l 371 (417)
T CHL00161 295 KILYLVLYFVLILFFSYFYSTIV--LNPKDISENLQKMAVSIPGIRPGKATTKYLKKTLNRLTLLG-ALFLAFIALLPNL 371 (417)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHh-HHHHHHHHHHHHH
Confidence 45688999999999998888887 8887542 456666664433 11222222 22222222 2223333444444
Q ss_pred cc-cccccchh---HHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 029375 133 FS-VFDVPVFW---PILLCYWIVLFVLTMRRQIAHMIKYRYIPFN 173 (194)
Q Consensus 133 f~-~fDiPVfW---PiLl~Yfi~Lf~lTm~rqI~HMiKyrYvPf~ 173 (194)
+. .++++++. +.=++=.+..-.=|+++-=.|+.+.+|-+|.
T Consensus 372 ~~~~~~~~~~~~~ggtslLI~Vgv~~~~~~qi~a~~~~~~Y~~~~ 416 (417)
T CHL00161 372 IESVLNLSVFKGLGTTSLLILVGVAIDTSRQIQTYLISNNYENMY 416 (417)
T ss_pred HHHhcCcccccccchhhhhhhHHHHHHHHHHHHHHHHHHhhcccc
Confidence 53 34566444 3222222223333444444577888887763
No 7
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=41.21 E-value=49 Score=26.65 Aligned_cols=41 Identities=22% Similarity=0.192 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhccc-----ccccchhHHHHHHHHHHHHHHHHHH
Q 029375 120 MTKAFCIAFVMTFFSV-----FDVPVFWPILLCYWIVLFVLTMRRQ 160 (194)
Q Consensus 120 ~tra~~ia~~~Tff~~-----fDiPVfWPiLl~Yfi~Lf~lTm~rq 160 (194)
++-++++|.++.+++. -.-|+-+...+.||++..++|.-.-
T Consensus 33 g~~a~~iA~~a~~~d~~~~f~~s~~~~~~~v~~YfiLs~il~~~~~ 78 (162)
T PF06703_consen 33 GYLAVIIAGFAFFYDYKYPFPESKPYLIICVILYFILSGILTLYSY 78 (162)
T ss_pred HHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777754 4567888889999999988887543
No 8
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=32.85 E-value=20 Score=28.07 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHH
Q 029375 40 RWIGTLVILAIYC 52 (194)
Q Consensus 40 RW~~~~~L~~lf~ 52 (194)
||+++++++++++
T Consensus 1 RW~l~~iii~~i~ 13 (130)
T PF12273_consen 1 RWVLFAIIIVAIL 13 (130)
T ss_pred CeeeHHHHHHHHH
Confidence 7888877766544
No 9
>TIGR03097 PEP_O_lig_1 probable O-glycosylation ligase, exosortase system type 1-associated. These proteins are members of the O-antigen polymerase (wzy) family described by Pfam model pfam04932. This group is associated with genomes and ususally genomic contexts containing elements of the exosortase/PEP-CTERM protein export system, specificially the type 1 variety of this system described by the Genome Property, GenProp0652.
Probab=32.60 E-value=90 Score=28.59 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=39.6
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhccccccc---chhHHHHHHHHHHHHHHHHHHHHHHhh
Q 029375 108 IRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVP---VFWPILLCYWIVLFVLTMRRQIAHMIK 166 (194)
Q Consensus 108 iRRLPEFkFW~~~tra~~ia~~~Tff~~fDiP---VfWPiLl~Yfi~Lf~lTm~rqI~HMiK 166 (194)
++.-|+.++..-..-.++++.+.+..+-...+ .+|+++++++++...++-|++++.+..
T Consensus 69 ~~~~~~~~~lllf~~~~~ls~l~s~~~~~s~~~~~~~~~~~l~~~~~~~l~~~~~~l~~l~~ 130 (402)
T TIGR03097 69 IPWTPEVIFLLLLTIWMTVTTFFAFDPDVAFVQWDKVMKIFLMVLVTLMLISDRQRLHWLLW 130 (402)
T ss_pred CCCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 45677777766555444554444333322233 668899999999989899999988764
No 10
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=32.16 E-value=64 Score=25.21 Aligned_cols=20 Identities=15% Similarity=0.394 Sum_probs=9.9
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 029375 140 VFWPILLCYWIVLFVLTMRR 159 (194)
Q Consensus 140 VfWPiLl~Yfi~Lf~lTm~r 159 (194)
|+|-|+++-++++++++++.
T Consensus 3 ~l~~iii~~i~l~~~~~~~~ 22 (130)
T PF12273_consen 3 VLFAIIIVAILLFLFLFYCH 22 (130)
T ss_pred eeHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554443
No 11
>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.01 E-value=1.5e+02 Score=25.49 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHH--HHHHHHHh
Q 029375 141 FWPILLCYWIVLFVLTM--RRQIAHMI 165 (194)
Q Consensus 141 fWPiLl~Yfi~Lf~lTm--~rqI~HMi 165 (194)
+|-+=-+-++.-|++-| ++|++||-
T Consensus 80 ~~TlGnll~i~sf~fLmGP~~ql~~m~ 106 (175)
T KOG2887|consen 80 LYTLGNLLAIGSFAFLMGPVSQLKHMF 106 (175)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 45555555666666666 78999995
No 12
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=29.15 E-value=2.2e+02 Score=21.55 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=22.2
Q ss_pred cccccCCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHHH
Q 029375 87 EIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMT 131 (194)
Q Consensus 87 ~l~~eeg~~lp~~~~~EFrPFiRRLPEFkFW~~~tra~~ia~~~T 131 (194)
..|+|+|+..|..+.. -| -.++.+..+..+|++|.+..
T Consensus 27 rtq~E~g~vv~Gt~~s--AP-----~~~~l~rk~~~TTiiaavi~ 64 (85)
T PF07330_consen 27 RTQDEAGEVVPGTDPS--AP-----ANPRLKRKALITTIIAAVIF 64 (85)
T ss_pred cccCcCCCcCCCCCCC--CC-----CCchHHHHHHHHHHHHHHHH
Confidence 3445677776664432 33 34556677777777776643
No 13
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=28.05 E-value=84 Score=25.54 Aligned_cols=13 Identities=38% Similarity=0.955 Sum_probs=8.5
Q ss_pred HhcccccccchhHH
Q 029375 131 TFFSVFDVPVFWPI 144 (194)
Q Consensus 131 Tff~~fDiPVfWPi 144 (194)
||++ ++.|.||-+
T Consensus 3 ~~~~-~~~~~~w~~ 15 (167)
T PRK14475 3 SFFN-LSNPEFWVG 15 (167)
T ss_pred CCCC-CCchHHHHH
Confidence 4554 667888854
No 14
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=24.35 E-value=71 Score=25.25 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=15.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 029375 140 VFWPILLCYWIVLFVLTMRRQIAHMIKYR 168 (194)
Q Consensus 140 VfWPiLl~Yfi~Lf~lTm~rqI~HMiKyr 168 (194)
.+.|++++..+ ++++.+|.|-|-+.+++
T Consensus 6 ~ll~lv~i~~i-~yF~~iRPQkKr~K~~~ 33 (109)
T PRK05886 6 LFLPFLLIMGG-FMYFASRRQRKAMQATI 33 (109)
T ss_pred HHHHHHHHHHH-HHHHHccHHHHHHHHHH
Confidence 45566665444 44445677766655553
No 15
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=24.07 E-value=57 Score=25.91 Aligned_cols=30 Identities=13% Similarity=0.296 Sum_probs=15.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 029375 137 DVPVFWPILLCYWIVLFVLTMRRQIAHMIKYR 168 (194)
Q Consensus 137 DiPVfWPiLl~Yfi~Lf~lTm~rqI~HMiKyr 168 (194)
|++.++|+.+++-++ | +..|.|-|-+.+|+
T Consensus 2 ~~~~il~~vv~~~i~-y-f~iRPQkKr~Ke~~ 31 (113)
T PRK06531 2 GIPTIIMFVVMLGLI-F-FMQRQQKKQAQERQ 31 (113)
T ss_pred chHHHHHHHHHHHHH-H-heechHHHHHHHHH
Confidence 455666655543332 2 33666766666553
No 16
>COG0817 RuvC Holliday junction resolvasome, endonuclease subunit [DNA replication, recombination, and repair]
Probab=22.62 E-value=48 Score=28.03 Aligned_cols=43 Identities=19% Similarity=0.080 Sum_probs=26.0
Q ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029375 125 CIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKY 167 (194)
Q Consensus 125 ~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~lTm~rqI~HMiKy 167 (194)
.+.++.---.-.++..|-|-.+==-++=..=.=|+||+||+|.
T Consensus 83 Gv~~la~~~~~l~v~eY~p~~VKkavvG~G~A~K~QVq~MV~~ 125 (160)
T COG0817 83 GVALLAAARRGLPVFEYTPNQVKKAVVGNGKADKEQVQHMVKR 125 (160)
T ss_pred HHHHHHHHHcCCChhhccHHHHHHHhhcCCcccHHHHHHHHHH
Confidence 3333444444566666777665444444444558999999984
No 17
>PF14036 YlaH: YlaH-like protein
Probab=22.27 E-value=1.3e+02 Score=22.62 Aligned_cols=46 Identities=22% Similarity=0.402 Sum_probs=29.1
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHH
Q 029375 107 FIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTM 157 (194)
Q Consensus 107 FiRRLPEFkFW~~~tra~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~lTm 157 (194)
|-|||| .|.+.+-.+..++.|+.+-+++ +++|+--.-.+..-.+.|
T Consensus 27 FA~kLp---ilK~vivYi~L~iG~~vLtfl~--~~lPi~e~L~VAaliL~i 72 (77)
T PF14036_consen 27 FARKLP---ILKNVIVYILLAIGCFVLTFLA--VFLPIIEGLVVAALILGI 72 (77)
T ss_pred HHHHch---HHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHH
Confidence 455666 6778888888888877665544 348876555544444333
No 18
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=21.77 E-value=1.5e+02 Score=27.70 Aligned_cols=109 Identities=18% Similarity=0.261 Sum_probs=58.9
Q ss_pred ccEEEeehhHHHHHHHHHHhhcCCCCCccccc----cCCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHHH---
Q 029375 59 QGFYIISYGLGIYLLNLLIGFLSPLVDPEIEV----ADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMT--- 131 (194)
Q Consensus 59 ~g~yiVtY~LgIylLnlfi~FLtPk~Dp~l~~----eeg~~lp~~~~~EFrPFiRRLPEFkFW~~~tra~~ia~~~T--- 131 (194)
+-+|.+.|.+-|..++-|.+++ ..||+... +.|...|+-+.+ ++=.|-|-.--.=.++..|+.+++++.
T Consensus 274 ~~~~~i~y~~lii~fs~fys~i--~~nP~diA~~Lkk~g~~IpGiRpG--~~T~~yL~~~i~~~t~~Gai~l~~ia~lP~ 349 (395)
T TIGR02920 274 SPVGILIYLILQMLLSYFFTFV--NINPKEISKSFRKSGNYIPGIAPG--KDTQRYLNRLARRFCWFGGVFNAFQLGIPL 349 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHh--eECHHHHHHHHHHCCCCccCcCCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999998887 67887542 467777775533 343333333333344445555555443
Q ss_pred hcc-ccc-ccc--hhHHHHHHHHHHHHHHHHHHHH-HHhhhccccC
Q 029375 132 FFS-VFD-VPV--FWPILLCYWIVLFVLTMRRQIA-HMIKYRYIPF 172 (194)
Q Consensus 132 ff~-~fD-iPV--fWPiLl~Yfi~Lf~lTm~rqI~-HMiKyrYvPf 172 (194)
+.+ .++ ..- +-|.= +.-++=.++...|||+ |+.+.||-.|
T Consensus 350 ~~~~~~~~~~~~~~ggts-llI~vgv~ldt~~qi~~~~~~~~Y~~~ 394 (395)
T TIGR02920 350 YFALFVPHLLTEAYIPGQ-FMMITGMSFNIADEIRTILYFDRYKPL 394 (395)
T ss_pred HHHHHhccccceeehhhh-hhhhhhhHHhHHHHHHHHHHHHhhCCC
Confidence 332 222 211 22311 1122333444455554 6677777543
No 19
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=20.96 E-value=86 Score=29.92 Aligned_cols=110 Identities=16% Similarity=0.239 Sum_probs=58.0
Q ss_pred ccEEEeehhHHHHHHHHHHhhcCCCCCccccc----cCCCCCCCCCCC-CCCCcccC-CchhHHHHHHHHHHHHHHHHHh
Q 029375 59 QGFYIISYGLGIYLLNLLIGFLSPLVDPEIEV----ADGPLLPTKGSD-EFKPFIRR-LPEFKFWYSMTKAFCIAFVMTF 132 (194)
Q Consensus 59 ~g~yiVtY~LgIylLnlfi~FLtPk~Dp~l~~----eeg~~lp~~~~~-EFrPFiRR-LPEFkFW~~~tra~~ia~~~Tf 132 (194)
+.+|.+.|++-|.+.+-|-.++. +||+... ..|...|+-+.. |=+-+++| ++...++ .+.-..++|.+.++
T Consensus 309 ~~~~~~~y~~lii~Fs~fyt~i~--~nP~~iAenL~k~G~~IPGiRPGk~T~~yL~~~i~rlt~~-Gai~L~~ia~lP~i 385 (434)
T PRK12907 309 HPIGMTLYVGLIVAFTYFYAFIQ--VNPEQMAENLKKQNGYVPGIRPGKSTEQYVTKILYRLTFI-GAIFLGAISILPLV 385 (434)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHc--cCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHH-hHHHHHHHHHHHHH
Confidence 34567788888888888877775 8887552 346666664332 22223322 2222222 22233334444444
Q ss_pred c-ccccccchh-----HHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 029375 133 F-SVFDVPVFW-----PILLCYWIVLFVLTMRRQIAHMIKYRYIPFN 173 (194)
Q Consensus 133 f-~~fDiPVfW-----PiLl~Yfi~Lf~lTm~rqI~HMiKyrYvPf~ 173 (194)
+ ..+.+|.+. -+|.+ +..-.=|+++-=.|+...+|-+|-
T Consensus 386 ~~~~~~~~~~~~~gGTslLI~--VgV~ldt~~qi~s~l~~~~Y~~~~ 430 (434)
T PRK12907 386 FTKIATLPPSAQIGGTSLLII--VGVALETMKTLESQLVKRHYKGFI 430 (434)
T ss_pred HHHHhCCCcccccchhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 334555322 12322 333334555555688889998873
Done!