Query 029375
Match_columns 194
No_of_seqs 109 out of 239
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 19:32:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029375.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029375hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rdd_B UPF0092 membrane protei 34.0 46 0.0016 20.2 3.4 27 141-168 6-32 (37)
2 3owt_C Regulatory protein SIR3 33.0 13 0.00046 21.6 0.7 15 18-32 13-27 (27)
3 3r84_A Mediator of RNA polymer 32.7 25 0.00084 25.8 2.3 24 154-177 60-86 (86)
4 3j01_A Preprotein translocase 27.0 1.2E+02 0.004 27.7 6.3 108 60-173 308-426 (435)
5 3din_C Preprotein translocase 19.0 1.4E+02 0.0047 27.2 5.0 110 60-173 304-422 (431)
6 1v74_A Colicin D; colicin D - 14.7 70 0.0024 24.4 1.7 12 158-169 12-23 (107)
7 2hac_A T-cell surface glycopro 14.0 1.3E+02 0.0044 18.5 2.4 19 143-161 10-28 (33)
8 3eb7_A Insecticidal delta-endo 13.2 2.9E+02 0.0099 25.5 5.7 46 123-168 8-62 (589)
9 3dl8_G Preprotein translocase 13.1 1.1E+02 0.0039 27.7 2.9 107 60-172 309-426 (429)
10 2pif_A UPF0317 protein pspto_5 11.3 30 0.001 30.3 -1.4 6 138-143 226-231 (276)
No 1
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=33.95 E-value=46 Score=20.20 Aligned_cols=27 Identities=7% Similarity=0.338 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 029375 141 FWPILLCYWIVLFVLTMRRQIAHMIKYR 168 (194)
Q Consensus 141 fWPiLl~Yfi~Lf~lTm~rqI~HMiKyr 168 (194)
++|+++ -+++++++..|-|-|...+++
T Consensus 6 ~l~~v~-~~~ifYFl~iRPQ~Kr~K~~~ 32 (37)
T 2rdd_B 6 ILMLVV-FGLIFYFMILRPQQKRTKEHK 32 (37)
T ss_dssp HHHHHH-HHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHHHHHhhhHHHHHHHHH
Confidence 345433 345566677788888877765
No 2
>3owt_C Regulatory protein SIR3; RCT domain, protein binding; 2.00A {Saccharomyces cerevisiae}
Probab=32.98 E-value=13 Score=21.64 Aligned_cols=15 Identities=27% Similarity=0.198 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhhc
Q 029375 18 WGHDAWRLYQYYLDK 32 (194)
Q Consensus 18 ~~~~~~~~yQ~~LDk 32 (194)
..++++.+||..||+
T Consensus 13 tlsklkkkyqiildr 27 (27)
T 3owt_C 13 TLSKLKKKYQIILDR 27 (27)
T ss_pred HHHHHHhhheeeecC
Confidence 468999999999995
No 3
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=32.73 E-value=25 Score=25.80 Aligned_cols=24 Identities=25% Similarity=0.605 Sum_probs=15.7
Q ss_pred HHHHHHHHHHH---hhhccccCCcCcc
Q 029375 154 VLTMRRQIAHM---IKYRYIPFNIGKQ 177 (194)
Q Consensus 154 ~lTm~rqI~HM---iKyrYvPf~~gK~ 177 (194)
...|||||+|| |--|-+|-+.+||
T Consensus 60 ~v~LrkEIk~LdEnig~~~LPinv~~k 86 (86)
T 3r84_A 60 TTQLRKEIQLLDENVGTRLLPINVNKK 86 (86)
T ss_dssp HHHHHHHHHHHHHTBTTTBCCC-----
T ss_pred HHHHHHHHHHHHHccCCeeecccCCCC
Confidence 45789999999 6778888877764
No 4
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Probab=26.97 E-value=1.2e+02 Score=27.66 Aligned_cols=108 Identities=17% Similarity=0.360 Sum_probs=57.4
Q ss_pred cEEEeehhHHHHHHHHHHhhcCCCCCccccc----cCCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHH---HHh
Q 029375 60 GFYIISYGLGIYLLNLLIGFLSPLVDPEIEV----ADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFV---MTF 132 (194)
Q Consensus 60 g~yiVtY~LgIylLnlfi~FLtPk~Dp~l~~----eeg~~lp~~~~~EFrPFiRRLPEFkFW~~~tra~~ia~~---~Tf 132 (194)
-.|++.|++-|....-|-.++ .+||+... +.|...|.-+.. +|=.+-|-.--.=.....|+.++++ ..+
T Consensus 308 ~~~~~~y~~lii~F~~fyt~i--~~np~diA~~lkk~G~~IpGiRpG--~~T~~yL~~vi~rit~~Ga~~L~~iavlP~~ 383 (435)
T 3j01_A 308 PLYVLLYASAIIFFCFFYTAL--VFNPRETADNLKKSGAFVPGIRPG--EQTAKYIDKVMTRLTLVGALYITFICLIPEF 383 (435)
T ss_dssp GGGTHHHHHHHHHHHHHHHHH--SSCTTHHHHHTTSTTCSSSCCSSS--SSSCSHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHcCCcCCCcCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888787777 57887541 456666664432 1211112111111223344444444 344
Q ss_pred cc-cccccchhH---HHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 029375 133 FS-VFDVPVFWP---ILLCYWIVLFVLTMRRQIAHMIKYRYIPFN 173 (194)
Q Consensus 133 f~-~fDiPVfWP---iLl~Yfi~Lf~lTm~rqI~HMiKyrYvPf~ 173 (194)
+. .+++|.+-. +|+ -+..-.=||++-=.||+.++|-.|-
T Consensus 384 l~~~~~~~~~~gGTslLI--~VgV~ldt~~qi~s~l~~~~Y~g~~ 426 (435)
T 3j01_A 384 MRDAMKVPFYFGGTSLLI--VVVVIMDFMAQVQTLMMSSQYESAL 426 (435)
T ss_dssp TTSCCSSSSSSCCHHHHH--THHHHHHHHHHHHHHTSCCCCCCSC
T ss_pred HHHhhccCeecccHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 456774421 222 1222233555555688999999884
No 5
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=18.98 E-value=1.4e+02 Score=27.20 Aligned_cols=110 Identities=15% Similarity=0.202 Sum_probs=55.1
Q ss_pred cEEEeehhHHHHHHHHHHhhcCCCCCccccc----cCCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHH---Hh
Q 029375 60 GFYIISYGLGIYLLNLLIGFLSPLVDPEIEV----ADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVM---TF 132 (194)
Q Consensus 60 g~yiVtY~LgIylLnlfi~FLtPk~Dp~l~~----eeg~~lp~~~~~EFrPFiRRLPEFkFW~~~tra~~ia~~~---Tf 132 (194)
-+|++.|++.|....-|-.+++ +||+... +.|...|.-+.. +|=.+-|-.--.=.....|+.+++++ .+
T Consensus 304 ~~y~~~y~~lii~Fs~fy~~i~--~np~diA~~lkk~G~~IpGiRpG--~~T~~yL~~vi~rit~~Ga~~L~~iavlp~~ 379 (431)
T 3din_C 304 FLYLLIYGLLVFFFTYFYSVVI--FDPREISENIRKYGGYIPGLRPG--RSTEQYLHRVLNRVTFIGAVFLVVIALLPYL 379 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCT--THHHHHTTSCCCCBCSSCCCCCT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHCCCcCCCCCCC--hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3567778888888888888876 8886432 234445543332 22111121111112233344444433 44
Q ss_pred ccc-ccccchhH-HHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 029375 133 FSV-FDVPVFWP-ILLCYWIVLFVLTMRRQIAHMIKYRYIPFN 173 (194)
Q Consensus 133 f~~-fDiPVfWP-iLl~Yfi~Lf~lTm~rqI~HMiKyrYvPf~ 173 (194)
+.. +++|.+-. .=++=-+..-.=|+++-=.|++.++|-.|-
T Consensus 380 ~~~~~g~~~~~gGTslLI~Vgv~l~~~~qi~s~~~~~~Y~g~~ 422 (431)
T 3din_C 380 VQGAIKVNVWIGGTSALIAVGVALDIIQQMETHMVMRHYEGFI 422 (431)
T ss_dssp HTTTSCCSCCTTHHHHHHHHHHHHHHHHHHHHHCCCCCSSTTC
T ss_pred HHHHhCCCccccchhhhhhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 433 56764322 111111222223444444688999999884
No 6
>1v74_A Colicin D; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: d.243.1.1 PDB: 1tfo_A 1tfk_A*
Probab=14.73 E-value=70 Score=24.40 Aligned_cols=12 Identities=25% Similarity=0.210 Sum_probs=10.6
Q ss_pred HHHHHHHhhhcc
Q 029375 158 RRQIAHMIKYRY 169 (194)
Q Consensus 158 ~rqI~HMiKyrY 169 (194)
++|.+||-||.+
T Consensus 12 ~~qLqkkfkHa~ 23 (107)
T 1v74_A 12 RKQLDKKYKHAG 23 (107)
T ss_dssp HHHHHHHGGGGG
T ss_pred HHHHHhHhcccc
Confidence 799999999765
No 7
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=14.02 E-value=1.3e+02 Score=18.49 Aligned_cols=19 Identities=32% Similarity=0.509 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029375 143 PILLCYWIVLFVLTMRRQI 161 (194)
Q Consensus 143 PiLl~Yfi~Lf~lTm~rqI 161 (194)
-||++|=+++..+-.|..+
T Consensus 10 giL~iYgii~T~Ly~R~K~ 28 (33)
T 2hac_A 10 GILFIYGVILTALFLRVKF 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3799999999999888653
No 8
>3eb7_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus thuringiensis}
Probab=13.24 E-value=2.9e+02 Score=25.51 Aligned_cols=46 Identities=26% Similarity=0.397 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHH---------HHHHHHHHHhhhc
Q 029375 123 AFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVL---------TMRRQIAHMIKYR 168 (194)
Q Consensus 123 a~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~l---------Tm~rqI~HMiKyr 168 (194)
.+.++++.+.+..+-+|+.=+++-++-.++-.+ .+.+|++.||..|
T Consensus 8 ~~~i~i~~~ilg~~~vP~vg~~~~~~s~l~~~lwp~~~~~w~~~~~~ve~lIdq~ 62 (589)
T 3eb7_A 8 KTAISLVGTILGKLGVPLVGPIVSLYSTLIDVLWPGGKSQWEIFMEQVEALINQK 62 (589)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCSSSCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhhccCCcHHHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHHHH
Confidence 346777777777777999888887655555444 4778888888755
No 9
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=13.11 E-value=1.1e+02 Score=27.70 Aligned_cols=107 Identities=17% Similarity=0.299 Sum_probs=52.3
Q ss_pred cEEEeehhHHHHHHHHHHhhcCCCCCccccc----cCCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHH---HHh
Q 029375 60 GFYIISYGLGIYLLNLLIGFLSPLVDPEIEV----ADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFV---MTF 132 (194)
Q Consensus 60 g~yiVtY~LgIylLnlfi~FLtPk~Dp~l~~----eeg~~lp~~~~~EFrPFiRRLPEFkFW~~~tra~~ia~~---~Tf 132 (194)
-.|.+.|++.|....-|-.+++ +||+... +.|...|.-+.. +|=.+-|-.--.=.....|+.++++ ..+
T Consensus 309 ~~y~~~y~~lii~Fs~fy~~i~--~np~diA~~lkk~G~~IpGiRpG--~~T~~yL~~vi~rit~~Ga~~L~~iavlp~~ 384 (429)
T 3dl8_G 309 IFYNFLYVTFIVFFTYFYTAVL--INPVELAENLHKAGAFIPGVRPG--QDTVKYLERIINRLIFFGALFLSVIALIPIL 384 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCT--THHHHHHHTCCCCBSSSBCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHc--cCHHHHHHHHHHCCCcCCCCCCC--hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3567788888888888888876 8886441 234444443322 1111111111111222333334433 344
Q ss_pred ccc-ccccchh-H--HHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 029375 133 FSV-FDVPVFW-P--ILLCYWIVLFVLTMRRQIAHMIKYRYIPF 172 (194)
Q Consensus 133 f~~-fDiPVfW-P--iLl~Yfi~Lf~lTm~rqI~HMiKyrYvPf 172 (194)
+.. +++|.+- . +|+ -+..-.=|+++-=.||+.++|-.|
T Consensus 385 ~~~~~g~~~~~gGTslLI--~Vgv~l~~~~qi~s~l~~~~Y~g~ 426 (429)
T 3dl8_G 385 ISVWFNIPFYFGGTTALI--VVGVALDTFRQIETYLIQKKYKSY 426 (429)
T ss_dssp HTTSSCCSCCCSTHHHHH--HHHHHHHHHHHHHHHCCCCCTTCS
T ss_pred HHHHhCCCccccchhhhh--hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 433 5677432 1 222 122222244444467888888776
No 10
>2pif_A UPF0317 protein pspto_5379; UPF0317 family, structural genomics, PSI-2, protein structur initiative; 2.30A {Pseudomonas syringae PV} SCOP: d.382.1.1 PDB: 3db9_A
Probab=11.33 E-value=30 Score=30.32 Aligned_cols=6 Identities=83% Similarity=1.990 Sum_probs=3.5
Q ss_pred ccchhH
Q 029375 138 VPVFWP 143 (194)
Q Consensus 138 iPVfWP 143 (194)
|||||+
T Consensus 226 VPVFWa 231 (276)
T 2pif_A 226 VPVFWA 231 (276)
T ss_dssp EEEEEE
T ss_pred cceEec
Confidence 566664
Done!