Query 029376
Match_columns 194
No_of_seqs 215 out of 709
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 11:56:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029376.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029376hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0439 VAMP-associated protei 100.0 1.5E-29 3.3E-34 211.5 16.9 155 1-157 2-162 (218)
2 COG5066 SCS2 VAMP-associated p 100.0 5E-28 1.1E-32 202.2 12.5 119 8-128 3-122 (242)
3 PF00635 Motile_Sperm: MSP (Ma 99.9 1.2E-23 2.6E-28 157.1 12.5 91 8-99 2-93 (109)
4 PF14874 PapD-like: Flagellar- 98.7 5.8E-07 1.3E-11 66.3 11.4 70 6-75 2-74 (102)
5 PF00345 PapD_N: Pili and flag 97.2 0.0065 1.4E-07 46.2 10.7 107 8-127 2-117 (122)
6 PRK09926 putative chaperone pr 95.0 0.92 2E-05 39.1 13.3 73 6-81 25-107 (246)
7 PRK09918 putative fimbrial cha 94.5 0.58 1.3E-05 39.9 10.7 70 7-81 25-99 (230)
8 PF14646 MYCBPAP: MYCBP-associ 94.3 0.33 7.2E-06 44.9 9.4 63 14-76 238-313 (426)
9 PRK15249 fimbrial chaperone pr 93.8 0.75 1.6E-05 39.9 10.1 72 7-81 29-111 (253)
10 PF11614 FixG_C: IG-like fold 93.2 0.58 1.3E-05 35.3 7.5 52 25-76 33-86 (118)
11 PRK15299 fimbrial chaperone pr 93.2 3.9 8.4E-05 34.8 13.4 111 6-129 22-140 (227)
12 PF07610 DUF1573: Protein of u 93.1 0.6 1.3E-05 29.9 6.4 43 29-72 2-45 (45)
13 PRK15246 fimbrial assembly cha 92.7 1.6 3.6E-05 37.4 10.5 72 7-81 11-92 (233)
14 PRK15295 fimbrial assembly cha 92.1 2.2 4.8E-05 36.4 10.5 71 7-81 20-97 (226)
15 PRK15211 fimbrial chaperone pr 91.7 2.5 5.5E-05 36.2 10.4 70 8-81 24-99 (229)
16 PRK11385 putativi pili assembl 91.4 2.4 5.2E-05 36.5 10.0 72 7-81 27-110 (236)
17 PRK15290 lfpB fimbrial chapero 90.0 4.2 9.1E-05 35.2 10.3 109 8-128 39-155 (243)
18 PRK15208 long polar fimbrial c 89.9 4.8 0.0001 34.3 10.5 71 7-81 22-98 (228)
19 PRK15192 fimbrial chaperone Bc 89.7 4.3 9.2E-05 35.0 10.0 68 8-81 24-105 (234)
20 PRK15188 fimbrial chaperone pr 87.3 8.7 0.00019 33.0 10.4 71 7-81 28-104 (228)
21 PF06280 DUF1034: Fn3-like dom 87.3 2.1 4.5E-05 32.0 5.8 55 22-76 7-82 (112)
22 PRK15195 fimbrial chaperone pr 87.2 9.5 0.00021 32.6 10.5 71 7-81 26-102 (229)
23 PRK15254 fimbrial chaperone pr 86.7 10 0.00023 32.7 10.6 72 7-81 17-96 (239)
24 COG3121 FimC P pilus assembly 84.9 24 0.00051 30.2 14.1 112 7-130 28-146 (235)
25 TIGR03079 CH4_NH3mon_ox_B meth 82.9 3.1 6.7E-05 38.4 5.8 54 22-75 281-355 (399)
26 PRK15224 pili assembly chapero 82.8 17 0.00037 31.4 10.1 68 8-81 30-104 (237)
27 PF04744 Monooxygenase_B: Mono 80.3 9 0.00019 35.4 7.8 65 8-74 249-335 (381)
28 PRK15253 putative fimbrial ass 80.1 27 0.00058 30.2 10.4 70 8-81 35-114 (242)
29 PF10633 NPCBM_assoc: NPCBM-as 80.0 3.6 7.8E-05 28.7 4.2 57 22-78 4-64 (78)
30 PRK15274 putative periplasmic 79.6 29 0.00062 30.4 10.5 71 8-81 28-106 (257)
31 smart00809 Alpha_adaptinC2 Ada 79.5 17 0.00036 26.3 7.9 54 22-75 17-74 (104)
32 PRK15233 putative fimbrial cha 79.4 30 0.00064 30.1 10.5 68 8-81 42-116 (246)
33 PRK15218 fimbrial chaperone pr 76.2 49 0.0011 28.3 14.7 107 8-128 20-138 (226)
34 PRK15285 putative fimbrial cha 75.9 46 0.00099 29.0 10.7 70 9-81 28-105 (250)
35 PF00927 Transglut_C: Transglu 75.0 13 0.00029 27.2 6.3 56 20-75 12-77 (107)
36 PF05506 DUF756: Domain of unk 71.7 16 0.00035 26.1 5.9 46 25-73 20-66 (89)
37 PF02883 Alpha_adaptinC2: Adap 68.0 23 0.0005 26.1 6.2 53 22-74 23-79 (115)
38 PF06030 DUF916: Bacterial pro 65.9 59 0.0013 25.0 8.8 28 17-44 21-48 (121)
39 PF02753 PapD_C: Pili assembly 65.7 5.7 0.00012 26.9 2.3 43 29-72 1-45 (68)
40 PRK15308 putative fimbrial pro 64.9 92 0.002 26.9 10.7 84 6-97 16-117 (234)
41 PF11611 DUF4352: Domain of un 64.9 34 0.00074 25.1 6.6 53 22-74 35-101 (123)
42 TIGR02745 ccoG_rdxA_fixG cytoc 61.0 66 0.0014 30.3 9.1 52 24-75 347-400 (434)
43 PF03173 CHB_HEX: Putative car 59.3 12 0.00025 30.6 3.4 35 41-75 69-105 (164)
44 PF13473 Cupredoxin_1: Cupredo 56.2 69 0.0015 23.2 6.9 53 9-73 31-83 (104)
45 PF00553 CBM_2: Cellulose bind 50.7 31 0.00068 25.3 4.3 52 24-75 14-85 (101)
46 TIGR02656 cyanin_plasto plasto 47.8 61 0.0013 23.6 5.4 62 5-72 9-76 (99)
47 PF12690 BsuPI: Intracellular 47.7 1E+02 0.0022 22.0 6.5 21 25-45 2-22 (82)
48 PF05753 TRAP_beta: Translocon 47.4 1.1E+02 0.0025 25.2 7.5 53 22-75 37-98 (181)
49 smart00637 CBD_II CBD_II domai 44.8 1.1E+02 0.0024 21.7 6.8 47 26-72 9-75 (92)
50 PF07705 CARDB: CARDB; InterP 36.0 1.4E+02 0.0031 20.5 5.7 54 22-75 18-72 (101)
51 PRK15249 fimbrial chaperone pr 35.5 85 0.0018 27.1 5.2 42 28-70 177-219 (253)
52 COG3121 FimC P pilus assembly 35.4 75 0.0016 27.1 4.8 44 27-72 165-210 (235)
53 PF08402 TOBE_2: TOBE domain; 30.5 1.5E+02 0.0033 19.1 7.3 65 8-72 1-69 (75)
54 PF09640 DUF2027: Domain of un 30.2 90 0.002 25.7 4.2 67 25-98 18-84 (162)
55 PRK09926 putative chaperone pr 29.8 1.6E+02 0.0034 25.3 5.9 43 27-71 173-217 (246)
56 smart00605 CW CW domain. 28.7 72 0.0016 22.9 3.1 22 28-49 58-80 (94)
57 PF11906 DUF3426: Protein of u 28.6 2.3E+02 0.0049 21.8 6.2 53 22-74 67-136 (149)
58 PF13205 Big_5: Bacterial Ig-l 28.6 2.1E+02 0.0046 20.1 7.1 56 14-72 26-84 (107)
59 PRK15295 fimbrial assembly cha 28.3 1.4E+02 0.0031 25.3 5.3 40 28-71 158-198 (226)
60 PF08277 PAN_3: PAN-like domai 27.7 79 0.0017 21.0 3.0 19 25-43 53-71 (71)
61 PF10342 GPI-anchored: Ser-Thr 27.0 2.1E+02 0.0047 19.6 7.3 60 12-72 14-78 (93)
62 PRK15192 fimbrial chaperone Bc 26.7 1.6E+02 0.0035 25.3 5.4 41 28-71 163-203 (234)
63 PRK15246 fimbrial assembly cha 26.0 1.7E+02 0.0036 25.1 5.3 39 28-70 154-192 (233)
64 PF06483 ChiC: Chitinase C; I 25.3 87 0.0019 26.2 3.3 26 37-73 116-141 (180)
65 PF07233 DUF1425: Protein of u 25.3 2.7E+02 0.0058 20.2 7.7 35 22-56 23-59 (94)
66 KOG3865 Arrestin [Signal trans 23.0 1.2E+02 0.0026 27.9 4.0 71 1-75 189-277 (402)
67 PRK15299 fimbrial chaperone pr 22.3 1.9E+02 0.0041 24.5 5.0 39 28-70 161-200 (227)
68 PRK09918 putative fimbrial cha 22.0 1.8E+02 0.0039 24.6 4.8 42 28-71 156-200 (230)
69 PRK10378 inactive ferrous ion 22.0 4.3E+02 0.0093 24.5 7.5 59 27-91 53-116 (375)
70 PRK15224 pili assembly chapero 21.3 2.3E+02 0.005 24.4 5.4 39 28-70 170-209 (237)
71 PRK02710 plastocyanin; Provisi 21.2 3.6E+02 0.0078 20.2 6.0 54 7-72 41-96 (119)
72 KOG1769 Ubiquitin-like protein 20.9 1.2E+02 0.0026 23.0 3.1 26 25-50 19-44 (99)
73 PRK15208 long polar fimbrial c 20.4 2.3E+02 0.0049 24.0 5.1 39 28-70 159-198 (228)
74 cd06409 PB1_MUG70 The MUG70 pr 20.2 64 0.0014 23.7 1.4 22 40-61 2-25 (86)
No 1
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.5e-29 Score=211.50 Aligned_cols=155 Identities=43% Similarity=0.652 Sum_probs=131.4
Q ss_pred CCCCCcceEEeCC-eeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCceEeCCCCeEEEEEEeccCCcCC
Q 029376 1 MMSTGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP 79 (194)
Q Consensus 1 m~~~~~lL~I~P~-eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~p 79 (194)
|++.+.+|.|.|. +|.|.+++++++.|.|+|+|+++.++|||||||+|++|||||+.|+|.||++++|.|.+|+....|
T Consensus 2 ~~~~~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q~~~~~P 81 (218)
T KOG0439|consen 2 MLETESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQPFEKSP 81 (218)
T ss_pred CccccCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEeccCccCc
Confidence 6778899999995 999999999899999999999999999999999999999999999999999999999999988889
Q ss_pred CCCCCCceEEEEEEEeCCCCCccCcchhhhcccC--CCeeeEEEeEEEEeCCCCCCCCCCCC---CcCCCCCCccccCCC
Q 029376 80 PDMQCKDKFLLQGVVASPGATAKDITPEMFNKEA--GHHVEECKLRVLYVAPPRPPSPVHEG---SEEGSSPRASVSDNG 154 (194)
Q Consensus 80 ~d~~~kDKFlVqs~~v~~~~~~~di~~~~F~k~~--~~~v~e~KLrv~~~~p~~pps~v~~~---~e~~~s~~~~~~~~~ 154 (194)
.|++|+|||+||++.++.+ +..++ .++|.-.. +..+.+.+++|.|..|+.+++....+ ...+........++.
T Consensus 82 ~d~~~r~kF~v~~~~~~~~-~~~~~-~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (218)
T KOG0439|consen 82 PDFKSRHKFLIQSLKAPPP-TTRDV-VDLWKFQKETPKESFETKLRVVFVAPTETDSVVAKLQKAKKKEAEKEAFGEATK 159 (218)
T ss_pred hhhcccceEEEEEEecCCc-cccch-hhhccccccccccccceeeEEEeeCCCCCcccccccccccccCCcccccccccc
Confidence 9999999999999999976 33344 35666555 78899999999999998887777665 555555555544444
Q ss_pred CCC
Q 029376 155 NFS 157 (194)
Q Consensus 155 ~~~ 157 (194)
...
T Consensus 160 ~~~ 162 (218)
T KOG0439|consen 160 EAS 162 (218)
T ss_pred ccC
Confidence 443
No 2
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=99.95 E-value=5e-28 Score=202.16 Aligned_cols=119 Identities=35% Similarity=0.601 Sum_probs=108.1
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCceEeCCCCeEEEEEEeccCCcCC-CCCCCCc
Q 029376 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP-PDMQCKD 86 (194)
Q Consensus 8 L~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~p-~d~~~kD 86 (194)
+.|+|. +.|..|+....++.+.|.|++..+|+||||||+|+.||||||.|+|.|++++.|.|+||+.++.| +|.+|+|
T Consensus 3 veisp~-~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCrd 81 (242)
T COG5066 3 VEISPQ-TTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRD 81 (242)
T ss_pred eEecCc-eEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCccccc
Confidence 556665 55666899999999999999999999999999999999999999999999999999999999888 7999999
Q ss_pred eEEEEEEEeCCCCCccCcchhhhcccCCCeeeEEEeEEEEeC
Q 029376 87 KFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVA 128 (194)
Q Consensus 87 KFlVqs~~v~~~~~~~di~~~~F~k~~~~~v~e~KLrv~~~~ 128 (194)
|||||++..+...+..|+ .++|....+.-|.+.|+||+|..
T Consensus 82 KFLiqs~~~~~~l~g~d~-ad~wt~~sk~~i~~rkIrcvyse 122 (242)
T COG5066 82 KFLIQSYRFDWRLSGSDF-ADHWTSSSKKPIWTRKIRCVYSE 122 (242)
T ss_pred eeEEEEeccChhhccchH-HHHHHhhccccchhhheeEEeec
Confidence 999999999988877888 48888777777999999999984
No 3
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=99.91 E-value=1.2e-23 Score=157.05 Aligned_cols=91 Identities=40% Similarity=0.699 Sum_probs=77.1
Q ss_pred eEEeCC-eeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCceEeCCCCeEEEEEEeccCCcCCCCCCCCc
Q 029376 8 LNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKD 86 (194)
Q Consensus 8 L~I~P~-eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~p~d~~~kD 86 (194)
|.|+|. .|.|++++++...+.|+|+|.++++||||||||+|.+|+|+|+.|+|.||+++.|.|++++....+.. ..+|
T Consensus 2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~~~~~~~~~~-~~~d 80 (109)
T PF00635_consen 2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITFQPFDFEPSN-KKKD 80 (109)
T ss_dssp CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE-SSSTTTTS-TSSE
T ss_pred eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEEEecccCCCC-CCCC
Confidence 789998 89999999999999999999999999999999999999999999999999999999999997655443 2399
Q ss_pred eEEEEEEEeCCCC
Q 029376 87 KFLLQGVVASPGA 99 (194)
Q Consensus 87 KFlVqs~~v~~~~ 99 (194)
||+|+++.++++.
T Consensus 81 kf~I~~~~~~~~~ 93 (109)
T PF00635_consen 81 KFLIQSIVVPDNA 93 (109)
T ss_dssp EEEEEEEEE-TT-
T ss_pred EEEEEEEEcCCCc
Confidence 9999999998765
No 4
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=98.66 E-value=5.8e-07 Score=66.33 Aligned_cols=70 Identities=23% Similarity=0.425 Sum_probs=61.6
Q ss_pred cceEEeCCeeEEec-cCCCeeEEEEEEEcCCCCeEEEEeeecC--CCcEEEeCCceEeCCCCeEEEEEEeccC
Q 029376 6 ELLNIEPQELQFPF-ELRKQISCSLQLSNKTDNYVAFKVKTTN--PKKYCVRPNTGVVLPRSTCDVIVTMQSQ 75 (194)
Q Consensus 6 ~lL~I~P~eL~F~~-~~~k~~~~~L~L~N~s~~~VAFKVKTT~--P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~ 75 (194)
..|.++|.+|.|-. ..+......|+|+|.+..+..|+|+.-. ...|.|.|..|+|.||++.++.|++.+.
T Consensus 2 P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~ 74 (102)
T PF14874_consen 2 PTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPT 74 (102)
T ss_pred CEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeC
Confidence 36899999999974 5577788999999999999999998643 5689999999999999999999999954
No 5
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=97.22 E-value=0.0065 Score=46.20 Aligned_cols=107 Identities=19% Similarity=0.263 Sum_probs=72.1
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecC---C------CcEEEeCCceEeCCCCeEEEEEEeccCCcC
Q 029376 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN---P------KKYCVRPNTGVVLPRSTCDVIVTMQSQKEA 78 (194)
Q Consensus 8 L~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~---P------~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~ 78 (194)
|.|.|..+.|+.. +....++|+|.++.++.+.+.... . ..+.|-|..-.|+||++..|.| +... ..
T Consensus 2 i~i~~trii~~~~---~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~~-~~ 76 (122)
T PF00345_consen 2 IQISPTRIIFNES---QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRGS-KL 76 (122)
T ss_dssp EEESSSEEEEETT---SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EECS-GS
T ss_pred EEEccEEEEEeCC---CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-EecC-CC
Confidence 6788999999863 348899999999999999988664 1 2789999999999999999999 5432 34
Q ss_pred CCCCCCCceEEEEEEEeCCCCCccCcchhhhcccCCCeeeEEEeEEEEe
Q 029376 79 PPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYV 127 (194)
Q Consensus 79 p~d~~~kDKFlVqs~~v~~~~~~~di~~~~F~k~~~~~v~e~KLrv~~~ 127 (194)
+.+-...-++.+..+..... ..+ .+..-.....+.+++.|.
T Consensus 77 ~~~~E~~yrl~~~~iP~~~~--~~~------~~~~v~i~~~~~i~v~~r 117 (122)
T PF00345_consen 77 PIDRESLYRLSFREIPPSEA--ENE------SKNGVQIALRYSIPVFYR 117 (122)
T ss_dssp -SSS-EEEEEEEEEEESCCT--TSS------SSSEEEEEEEEEEEEEEE
T ss_pred CCCceEEEEEEEEEEecccc--ccc------ccceEEEEEEEEEEEEEC
Confidence 44433334444555554331 000 111113456778888777
No 6
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=95.01 E-value=0.92 Score=39.14 Aligned_cols=73 Identities=14% Similarity=0.219 Sum_probs=56.6
Q ss_pred cceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecCCC----------cEEEeCCceEeCCCCeEEEEEEeccC
Q 029376 6 ELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPK----------KYCVRPNTGVVLPRSTCDVIVTMQSQ 75 (194)
Q Consensus 6 ~lL~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~P~----------~Y~VrP~~GiI~P~~s~~I~Vtlq~~ 75 (194)
--|.|.|..+.|+.. ....+|+|.|.++.++.-.......+ -|.|-|+.--|+||+...|.|.....
T Consensus 25 A~i~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~ 101 (246)
T PRK09926 25 ADIVISGTRIIYKSD---QKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYTAS 101 (246)
T ss_pred eeEEeCceEEEEeCC---CceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeCCC
Confidence 347888889999963 45789999999998877666554221 39999999999999999999998754
Q ss_pred CcCCCC
Q 029376 76 KEAPPD 81 (194)
Q Consensus 76 ~e~p~d 81 (194)
..+|.|
T Consensus 102 ~~lP~D 107 (246)
T PRK09926 102 TALPKD 107 (246)
T ss_pred CCCCCC
Confidence 246655
No 7
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=94.46 E-value=0.58 Score=39.94 Aligned_cols=70 Identities=17% Similarity=0.142 Sum_probs=54.3
Q ss_pred ceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecCC-----CcEEEeCCceEeCCCCeEEEEEEeccCCcCCCC
Q 029376 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNP-----KKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPD 81 (194)
Q Consensus 7 lL~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~P-----~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~p~d 81 (194)
-|.+.|..+.|... ....+++|+|.++.++......... ..|.|.|+.-.|+||+...|.|.+.. ..|.|
T Consensus 25 ~v~l~~tRvi~~~~---~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~~--~lp~d 99 (230)
T PRK09918 25 GMVPETSVVIVEES---DGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILKS--GSPLN 99 (230)
T ss_pred eEEEccEEEEEECC---CCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEECC--CCCCC
Confidence 46778888998863 4578999999999877666654221 35999999999999999999998874 25554
No 8
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=94.28 E-value=0.33 Score=44.89 Aligned_cols=63 Identities=19% Similarity=0.360 Sum_probs=53.1
Q ss_pred eeEEeccCCCeeEEEEE-EEcCCCCeEEEEeeecC------------CCcEEEeCCceEeCCCCeEEEEEEeccCC
Q 029376 14 ELQFPFELRKQISCSLQ-LSNKTDNYVAFKVKTTN------------PKKYCVRPNTGVVLPRSTCDVIVTMQSQK 76 (194)
Q Consensus 14 eL~F~~~~~k~~~~~L~-L~N~s~~~VAFKVKTT~------------P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~ 76 (194)
.|.|....+......|. |.|.+..-|-|..+--. ...|......|+|.||++..+.|+.++..
T Consensus 238 ~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~s~~ 313 (426)
T PF14646_consen 238 RLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFKSRK 313 (426)
T ss_pred EEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEeCCC
Confidence 78898877766666666 99999999999976532 46789999999999999999999999864
No 9
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=93.79 E-value=0.75 Score=39.94 Aligned_cols=72 Identities=19% Similarity=0.238 Sum_probs=54.4
Q ss_pred ceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecC------C-----CcEEEeCCceEeCCCCeEEEEEEeccC
Q 029376 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN------P-----KKYCVRPNTGVVLPRSTCDVIVTMQSQ 75 (194)
Q Consensus 7 lL~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~------P-----~~Y~VrP~~GiI~P~~s~~I~Vtlq~~ 75 (194)
-|.|.|..+.|+.. ....+|+|.|.++.++.....+.. | .-|.|.|+.--|+||+...|.|.....
T Consensus 29 ~l~l~~TRviy~~~---~~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~ 105 (253)
T PRK15249 29 SVTILGSRIIYPST---ASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYNNT 105 (253)
T ss_pred EEEeCceEEEEeCC---CcceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEcCC
Confidence 47888999999854 346899999999987665554322 1 139999999999999999999998753
Q ss_pred CcCCCC
Q 029376 76 KEAPPD 81 (194)
Q Consensus 76 ~e~p~d 81 (194)
..+|.|
T Consensus 106 ~~lP~D 111 (253)
T PRK15249 106 KKLPQD 111 (253)
T ss_pred CCCCCC
Confidence 245655
No 10
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=93.17 E-value=0.58 Score=35.31 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=36.9
Q ss_pred eEEEEEEEcCCCCeEEEEeeecCCCcEEE-eCCceE-eCCCCeEEEEEEeccCC
Q 029376 25 ISCSLQLSNKTDNYVAFKVKTTNPKKYCV-RPNTGV-VLPRSTCDVIVTMQSQK 76 (194)
Q Consensus 25 ~~~~L~L~N~s~~~VAFKVKTT~P~~Y~V-rP~~Gi-I~P~~s~~I~Vtlq~~~ 76 (194)
-...|+|.|+++++.-|.|+-..+..+.+ .|...+ |.||++..+.|.+....
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p~ 86 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTAPP 86 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-G
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEECH
Confidence 35899999999999999999988888888 665554 89999999999887653
No 11
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=93.17 E-value=3.9 Score=34.80 Aligned_cols=111 Identities=11% Similarity=0.102 Sum_probs=69.6
Q ss_pred cceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecC--------CCcEEEeCCceEeCCCCeEEEEEEeccCCc
Q 029376 6 ELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN--------PKKYCVRPNTGVVLPRSTCDVIVTMQSQKE 77 (194)
Q Consensus 6 ~lL~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~--------P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e 77 (194)
--|.+.|..+.|+.. ....+|+|.|.++.++.-...... ...|.|.|+.--|+||+...|.|..... .
T Consensus 22 a~i~l~~TRvi~~~~---~~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~ 97 (227)
T PRK15299 22 AGINIGTTRVIFHGD---AKDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTGG-N 97 (227)
T ss_pred eeEEECceEEEEeCC---CcEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEECCC-C
Confidence 347788889999864 347899999999876655544321 1249999999999999999999987643 3
Q ss_pred CCCCCCCCceEEEEEEEeCCCCCccCcchhhhcccCCCeeeEEEeEEEEeCC
Q 029376 78 APPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAP 129 (194)
Q Consensus 78 ~p~d~~~kDKFlVqs~~v~~~~~~~di~~~~F~k~~~~~v~e~KLrv~~~~p 129 (194)
+|.|...- |-+-...+|+.... +- +..=......+|++.|.++
T Consensus 98 lP~DrEsl--f~lnv~eIP~~~~~-~~------~n~l~iavr~riKLfyRP~ 140 (227)
T PRK15299 98 LPEDRESL--YWLDIKSIPSSNPD-NK------HNTLMLAVKAEFKLIYRPK 140 (227)
T ss_pred CCCcceEE--EEEEeEecCCCCcc-cc------cceEEEEEeeeeeEEEccc
Confidence 56552222 44444444432100 00 0001234557778888743
No 12
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=93.11 E-value=0.6 Score=29.85 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=35.2
Q ss_pred EEEEcCCCCeEE-EEeeecCCCcEEEeCCceEeCCCCeEEEEEEe
Q 029376 29 LQLSNKTDNYVA-FKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTM 72 (194)
Q Consensus 29 L~L~N~s~~~VA-FKVKTT~P~~Y~VrP~~GiI~P~~s~~I~Vtl 72 (194)
++++|.++.++. .+|+| +=+...+......|.||++..|.|+.
T Consensus 2 F~~~N~g~~~L~I~~v~t-sCgCt~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQT-SCGCTTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeE-ccCCEEeeCCcceECCCCEEEEEEEC
Confidence 679999997765 45554 66788888889999999999999873
No 13
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=92.72 E-value=1.6 Score=37.44 Aligned_cols=72 Identities=21% Similarity=0.297 Sum_probs=53.7
Q ss_pred ceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecC------C----CcEEEeCCceEeCCCCeEEEEEEeccCC
Q 029376 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN------P----KKYCVRPNTGVVLPRSTCDVIVTMQSQK 76 (194)
Q Consensus 7 lL~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~------P----~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~ 76 (194)
-|.|.+..+.|+.. ....+|+|.|.++.++.-...... | .-|.|.|+.--|+|++...|.|......
T Consensus 11 ~v~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~~ 87 (233)
T PRK15246 11 AVNIDRTRIIFASD---DVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLSSRQ 87 (233)
T ss_pred EEEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEECCCC
Confidence 47788889999863 457899999999986544442221 1 1499999999999999999999987533
Q ss_pred cCCCC
Q 029376 77 EAPPD 81 (194)
Q Consensus 77 e~p~d 81 (194)
.+|.|
T Consensus 88 ~LP~D 92 (233)
T PRK15246 88 QLATD 92 (233)
T ss_pred CCCCC
Confidence 45654
No 14
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=92.08 E-value=2.2 Score=36.37 Aligned_cols=71 Identities=13% Similarity=0.104 Sum_probs=52.1
Q ss_pred ceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecC-------CCcEEEeCCceEeCCCCeEEEEEEeccCCcCC
Q 029376 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN-------PKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP 79 (194)
Q Consensus 7 lL~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~-------P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~p 79 (194)
-|.+.+..+.|+.. ....+|+|.|.++.++.-...... ...|.|.|+.--|+||+...|.|..... .+|
T Consensus 20 ~i~l~~TRvI~~~~---~~~~si~i~N~~~~p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~~~-~LP 95 (226)
T PRK15295 20 SIVVGGTRLVFDGN---NDESSINVENKDSKANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRSGA-PLP 95 (226)
T ss_pred cEEeCceEEEEeCC---CceeEEEEEeCCCCcEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEECCC-CCC
Confidence 36788888999864 347899999999876443322211 2259999999999999999999988643 355
Q ss_pred CC
Q 029376 80 PD 81 (194)
Q Consensus 80 ~d 81 (194)
.|
T Consensus 96 ~D 97 (226)
T PRK15295 96 AD 97 (226)
T ss_pred CC
Confidence 54
No 15
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=91.70 E-value=2.5 Score=36.22 Aligned_cols=70 Identities=14% Similarity=0.138 Sum_probs=52.3
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecC------CCcEEEeCCceEeCCCCeEEEEEEeccCCcCCCC
Q 029376 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN------PKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPD 81 (194)
Q Consensus 8 L~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~------P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~p~d 81 (194)
|.+.+..+.|+.. ....+|+|.|.+++++.-...... ..-|.|.|+.--|+||+...|.|..... .+|.|
T Consensus 24 v~l~~TRvIy~~~---~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~-~LP~D 99 (229)
T PRK15211 24 FVLNGTRFIYDEG---RKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMKTDS-ALPKD 99 (229)
T ss_pred EEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 6777778888863 347899999999987443333211 1249999999999999999999998753 45655
No 16
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=91.44 E-value=2.4 Score=36.54 Aligned_cols=72 Identities=18% Similarity=0.209 Sum_probs=52.8
Q ss_pred ceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeec------------CCCcEEEeCCceEeCCCCeEEEEEEecc
Q 029376 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTT------------NPKKYCVRPNTGVVLPRSTCDVIVTMQS 74 (194)
Q Consensus 7 lL~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT------------~P~~Y~VrP~~GiI~P~~s~~I~Vtlq~ 74 (194)
-|.+.+..+.|+.. ....+++|.|.++++..=..... ....|.|-|+.--|+|++...+.|....
T Consensus 27 ~v~l~~TRvIy~~~---~~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~ 103 (236)
T PRK11385 27 GVVVGGTRFIFPAD---RESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRTE 103 (236)
T ss_pred eEEeCceEEEEcCC---CceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEECC
Confidence 46777778999863 45789999999998644333211 1134999999999999999999998875
Q ss_pred CCcCCCC
Q 029376 75 QKEAPPD 81 (194)
Q Consensus 75 ~~e~p~d 81 (194)
...+|.|
T Consensus 104 ~~~LP~D 110 (236)
T PRK11385 104 SDILPVD 110 (236)
T ss_pred CCCCCCC
Confidence 3346655
No 17
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=90.04 E-value=4.2 Score=35.23 Aligned_cols=109 Identities=13% Similarity=0.147 Sum_probs=68.2
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCC-CeEEEEeeec--C-C----CcEEEeCCceEeCCCCeEEEEEEeccCCcCC
Q 029376 8 LNIEPQELQFPFELRKQISCSLQLSNKTD-NYVAFKVKTT--N-P----KKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP 79 (194)
Q Consensus 8 L~I~P~eL~F~~~~~k~~~~~L~L~N~s~-~~VAFKVKTT--~-P----~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~p 79 (194)
|.+.+..+.|+.. ....+|+|.|.++ .++.-..... + . .-|.|-|+.--|+||+...|.|.......+|
T Consensus 39 v~l~~TRvIy~~~---~~~~sl~v~N~~~~~p~LvQsWvd~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~~~~LP 115 (243)
T PRK15290 39 VVIGGTRVVYLSN---NPDKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEKVLRIIHTKGVSLP 115 (243)
T ss_pred EEECceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcccCCEEEcCCeEEECCCCceEEEEEEcCCCCCC
Confidence 6778888999863 4468999999986 4565555443 1 1 1499999999999999999999987543466
Q ss_pred CCCCCCceEEEEEEEeCCCCCccCcchhhhcccCCCeeeEEEeEEEEeC
Q 029376 80 PDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVA 128 (194)
Q Consensus 80 ~d~~~kDKFlVqs~~v~~~~~~~di~~~~F~k~~~~~v~e~KLrv~~~~ 128 (194)
.|.. --|-+-...+|+....++ +..=......++++-|.+
T Consensus 116 ~DRE--Slf~lnv~eIPp~~~~~~-------~n~L~iair~rIKlFyRP 155 (243)
T PRK15290 116 DDRE--SVFWLNIKNIPPSASNKA-------TNSLEIAVKTRIKLFWRP 155 (243)
T ss_pred CCee--EEEEEEEEEcCCCCcccc-------cceEEEEEEEeeeEEEec
Confidence 5522 223333333443211000 000123456778888873
No 18
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=89.91 E-value=4.8 Score=34.31 Aligned_cols=71 Identities=11% Similarity=0.161 Sum_probs=51.2
Q ss_pred ceEEeCCeeEEeccCCCeeEEEEEEEcCCCC--eEEEEeeecCC----CcEEEeCCceEeCCCCeEEEEEEeccCCcCCC
Q 029376 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDN--YVAFKVKTTNP----KKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPP 80 (194)
Q Consensus 7 lL~I~P~eL~F~~~~~k~~~~~L~L~N~s~~--~VAFKVKTT~P----~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~p~ 80 (194)
-|.+.|..+.|+.. ....+|+|.|.+++ .+.+..-.... .-|.|-|+.--|+|++...|.|..... .+|.
T Consensus 22 gv~l~~TRvI~~~~---~~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~-~lP~ 97 (228)
T PRK15208 22 GVALSSTRVIYDGS---KKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVNITN-TLPQ 97 (228)
T ss_pred cEEeCceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEECCC-CCCC
Confidence 47888889999864 34789999999864 34333222211 239999999999999999999987643 3555
Q ss_pred C
Q 029376 81 D 81 (194)
Q Consensus 81 d 81 (194)
|
T Consensus 98 D 98 (228)
T PRK15208 98 D 98 (228)
T ss_pred C
Confidence 4
No 19
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=89.66 E-value=4.3 Score=35.01 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=51.8
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeec----------C----CCcEEEeCCceEeCCCCeEEEEEEec
Q 029376 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTT----------N----PKKYCVRPNTGVVLPRSTCDVIVTMQ 73 (194)
Q Consensus 8 L~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT----------~----P~~Y~VrP~~GiI~P~~s~~I~Vtlq 73 (194)
|.+....+.|+.. ....+|+|.|.++.+ |=|++. . ..-|.|-|+.--|+|++...+.|...
T Consensus 24 i~l~~TRvIy~~~---~k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~~~ 98 (234)
T PRK15192 24 VVIGGTRFIYHAG---APALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVVYT 98 (234)
T ss_pred EEeCceEEEEcCC---CceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEEEC
Confidence 6677778888863 447899999999986 555552 1 11399999999999999999999987
Q ss_pred cCCcCCCC
Q 029376 74 SQKEAPPD 81 (194)
Q Consensus 74 ~~~e~p~d 81 (194)
.. .+|.|
T Consensus 99 ~~-~LP~D 105 (234)
T PRK15192 99 GA-PLPAD 105 (234)
T ss_pred CC-CCCCc
Confidence 53 35655
No 20
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=87.32 E-value=8.7 Score=32.97 Aligned_cols=71 Identities=13% Similarity=0.250 Sum_probs=50.9
Q ss_pred ceEEeCCeeEEeccCCCeeEEEEEEEcCCCC--eEEEEeeec-C---CCcEEEeCCceEeCCCCeEEEEEEeccCCcCCC
Q 029376 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDN--YVAFKVKTT-N---PKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPP 80 (194)
Q Consensus 7 lL~I~P~eL~F~~~~~k~~~~~L~L~N~s~~--~VAFKVKTT-~---P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~p~ 80 (194)
-|.+.+..+.|+.. ....+++|+|.+++ ++....-.+ . ..-|.|.|+.--|+||+...|.|..... .+|.
T Consensus 28 gi~l~~TRvIy~~~---~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~-~lP~ 103 (228)
T PRK15188 28 GIALGATRVIYPQG---SKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYVGP-SLPT 103 (228)
T ss_pred eEEECcEEEEEcCC---CceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 46788888999863 44789999999864 333321111 1 1249999999999999999999988753 3555
Q ss_pred C
Q 029376 81 D 81 (194)
Q Consensus 81 d 81 (194)
|
T Consensus 104 D 104 (228)
T PRK15188 104 D 104 (228)
T ss_pred C
Confidence 4
No 21
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=87.28 E-value=2.1 Score=32.03 Aligned_cols=55 Identities=22% Similarity=0.340 Sum_probs=33.8
Q ss_pred CCeeEEEEEEEcCCCCeEEEEeeec-----C---CCcEEE--e-----------CCceEeCCCCeEEEEEEeccCC
Q 029376 22 RKQISCSLQLSNKTDNYVAFKVKTT-----N---PKKYCV--R-----------PNTGVVLPRSTCDVIVTMQSQK 76 (194)
Q Consensus 22 ~k~~~~~L~L~N~s~~~VAFKVKTT-----~---P~~Y~V--r-----------P~~GiI~P~~s~~I~Vtlq~~~ 76 (194)
++..+..|+|+|.+++.+.|++.-. . .+.|.. . |..=.|.||++.+|.|++....
T Consensus 7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p~ 82 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPPS 82 (112)
T ss_dssp -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--G
T ss_pred CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEehh
Confidence 3446789999999999999997754 1 122221 1 2223588999999999998743
No 22
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=87.19 E-value=9.5 Score=32.62 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=50.5
Q ss_pred ceEEeCCeeEEeccCCCeeEEEEEEEcCCCC--eEEEEeeecC----CCcEEEeCCceEeCCCCeEEEEEEeccCCcCCC
Q 029376 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDN--YVAFKVKTTN----PKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPP 80 (194)
Q Consensus 7 lL~I~P~eL~F~~~~~k~~~~~L~L~N~s~~--~VAFKVKTT~----P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~p~ 80 (194)
-|.+.+..+.|+.. ...++++|.|.+++ ++....-.+. ...|.|.|+.--|+||+...|.|..... .+|.
T Consensus 26 gi~i~~TRvIy~~~---~~~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lRIi~~~~-~LP~ 101 (229)
T PRK15195 26 GIALGATRVIYPAD---AKQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLRIIYAGP-PLAA 101 (229)
T ss_pred eEEECCeEEEEeCC---CceEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 37788888998864 33589999999864 4433211111 1359999999999999999999988643 3555
Q ss_pred C
Q 029376 81 D 81 (194)
Q Consensus 81 d 81 (194)
|
T Consensus 102 D 102 (229)
T PRK15195 102 D 102 (229)
T ss_pred C
Confidence 4
No 23
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=86.68 E-value=10 Score=32.68 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=51.2
Q ss_pred ceEEeCCeeEEeccCCCeeEEEEEEEcCCCC-eEEEEeeec--C--C-CcEEEeCCceEeCCCCeEEEEEEecc--CCcC
Q 029376 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDN-YVAFKVKTT--N--P-KKYCVRPNTGVVLPRSTCDVIVTMQS--QKEA 78 (194)
Q Consensus 7 lL~I~P~eL~F~~~~~k~~~~~L~L~N~s~~-~VAFKVKTT--~--P-~~Y~VrP~~GiI~P~~s~~I~Vtlq~--~~e~ 78 (194)
-+.+.+..+.|+.. ....+|+|.|.+++ ++.-..... . . .-|.|.|+.--|+||+...|.|.... ...+
T Consensus 17 ~v~l~~TRvIy~~~---~~~~sv~v~N~~~~~p~LvQsWv~d~~~~~~~pFivtPPlfrl~p~~~~~lRI~~~~~~~~~l 93 (239)
T PRK15254 17 AVNVDRTRIIMDAP---QKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQVRGLTDKL 93 (239)
T ss_pred eEEECceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcCCEEEcCCeEEECCCCceEEEEEEcccCCCCC
Confidence 46777788999863 45789999999863 544333221 1 1 25999999999999999999998763 2345
Q ss_pred CCC
Q 029376 79 PPD 81 (194)
Q Consensus 79 p~d 81 (194)
|.|
T Consensus 94 P~D 96 (239)
T PRK15254 94 PQD 96 (239)
T ss_pred CCC
Confidence 554
No 24
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.93 E-value=24 Score=30.23 Aligned_cols=112 Identities=13% Similarity=0.163 Sum_probs=75.2
Q ss_pred ceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeec-------CCCcEEEeCCceEeCCCCeEEEEEEeccCCcCC
Q 029376 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTT-------NPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP 79 (194)
Q Consensus 7 lL~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT-------~P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~p 79 (194)
-+.|.+..+.|+.. .....|+|.|.++.++.-.+..- ....|.|-|..--|+||+...|.|...+. ..|
T Consensus 28 ~v~i~~TRiI~~~~---~k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~~~~-~lP 103 (235)
T COG3121 28 GVVLGGTRIIYPAG---DKETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILYTGN-KLP 103 (235)
T ss_pred eEEecceEEEEeCC---CceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEecCC-CCC
Confidence 35677778898865 34789999998889999886654 24469999999999999999999999886 467
Q ss_pred CCCCCCceEEEEEEEeCCCCCccCcchhhhcccCCCeeeEEEeEEEEeCCC
Q 029376 80 PDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAPP 130 (194)
Q Consensus 80 ~d~~~kDKFlVqs~~v~~~~~~~di~~~~F~k~~~~~v~e~KLrv~~~~p~ 130 (194)
.|. ..-|-+.--.+|+... +.... ..-.....+++++-|.+..
T Consensus 104 ~dr--Eslf~lnv~eIPp~~~--~~~~~----n~lq~a~r~riKlf~RP~~ 146 (235)
T COG3121 104 ADR--ESLFRLNVDEIPPKSK--DDKGP----NVLQLALRSRIKLFYRPAG 146 (235)
T ss_pred CCc--eeEEEEEeeecCCCCc--ccCCc----ceEEEEeeeeeeEEECccc
Confidence 652 3344444444544210 11000 0012345678888887433
No 25
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=82.94 E-value=3.1 Score=38.44 Aligned_cols=54 Identities=15% Similarity=0.293 Sum_probs=40.8
Q ss_pred CCeeEEEEEEEcCCCCeEEEEeeecC------C-CcEEEeCCce--------------EeCCCCeEEEEEEeccC
Q 029376 22 RKQISCSLQLSNKTDNYVAFKVKTTN------P-KKYCVRPNTG--------------VVLPRSTCDVIVTMQSQ 75 (194)
Q Consensus 22 ~k~~~~~L~L~N~s~~~VAFKVKTT~------P-~~Y~VrP~~G--------------iI~P~~s~~I~Vtlq~~ 75 (194)
++..+-+++++|.++.+|-.+==+|+ | ..|...|.+. -|.|||+.+|.|..|..
T Consensus 281 GR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aqdA 355 (399)
T TIGR03079 281 GRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAKDA 355 (399)
T ss_pred CcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEehh
Confidence 67788999999999999988855554 4 3444444442 27899999999999854
No 26
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=82.78 E-value=17 Score=31.38 Aligned_cols=68 Identities=13% Similarity=0.253 Sum_probs=49.5
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeec----C---CCcEEEeCCceEeCCCCeEEEEEEeccCCcCCC
Q 029376 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTT----N---PKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPP 80 (194)
Q Consensus 8 L~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT----~---P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~p~ 80 (194)
|.+.-..+.|+.. ....+|+|.|.++.+ |-|++- . ..-|.|.|+.--|+|++...|.|..... .+|.
T Consensus 30 v~l~~TRvIy~~~---~k~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~pFivtPPlfRlep~~~~~lRI~~~~~-~LP~ 103 (237)
T PRK15224 30 VKLGATRVIYHAG---TAGATLSVSNPQNYP--ILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPT 103 (237)
T ss_pred EEeCceEEEEeCC---CcEEEEEEEcCCCCc--EEEEEEEeCCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCC
Confidence 3344446888753 346899999999876 666551 1 1249999999999999999999998743 4665
Q ss_pred C
Q 029376 81 D 81 (194)
Q Consensus 81 d 81 (194)
|
T Consensus 104 D 104 (237)
T PRK15224 104 D 104 (237)
T ss_pred c
Confidence 5
No 27
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=80.29 E-value=9 Score=35.42 Aligned_cols=65 Identities=17% Similarity=0.297 Sum_probs=42.2
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcE----------------------EEeCCceEeCCCCe
Q 029376 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKY----------------------CVRPNTGVVLPRST 65 (194)
Q Consensus 8 L~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~P~~Y----------------------~VrP~~GiI~P~~s 65 (194)
+.++-..-+|.-+ ++...-+|+++|+++++|-..==+|+.-+| .|.|+ +-|.||++
T Consensus 249 V~~~v~~A~Y~vp-gR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~-~pI~PGET 326 (381)
T PF04744_consen 249 VKVKVTDATYRVP-GRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDN-SPIAPGET 326 (381)
T ss_dssp EEEEEEEEEEESS-SSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES---S-B-TT-E
T ss_pred eEEEEeccEEecC-CcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCC-CCcCCCce
Confidence 4444445566655 788899999999999999888555544444 33443 35899999
Q ss_pred EEEEEEecc
Q 029376 66 CDVIVTMQS 74 (194)
Q Consensus 66 ~~I~Vtlq~ 74 (194)
.+|.|++|.
T Consensus 327 rtl~V~a~d 335 (381)
T PF04744_consen 327 RTLTVEAQD 335 (381)
T ss_dssp EEEEEEEE-
T ss_pred EEEEEEeeh
Confidence 999999975
No 28
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=80.12 E-value=27 Score=30.24 Aligned_cols=70 Identities=16% Similarity=0.251 Sum_probs=48.6
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecC------C----CcEEEeCCceEeCCCCeEEEEEEeccCCc
Q 029376 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN------P----KKYCVRPNTGVVLPRSTCDVIVTMQSQKE 77 (194)
Q Consensus 8 L~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~------P----~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e 77 (194)
|.+.-..+.|+.. ....+|+|.|.++.+..-.....+ | .-|.|.|+.--|+|++...|.|..... .
T Consensus 35 v~l~~TRvIy~~~---~k~~sv~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~~-~ 110 (242)
T PRK15253 35 IVIYGTRVIYPAE---KKEVVVQLVNQGEQASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKMPN-S 110 (242)
T ss_pred EEeCceEEEEeCC---CceEEEEEEcCCCCcEEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECCC-C
Confidence 3444457888853 346799999999876333332211 1 249999999999999999999987643 4
Q ss_pred CCCC
Q 029376 78 APPD 81 (194)
Q Consensus 78 ~p~d 81 (194)
+|.|
T Consensus 111 LP~D 114 (242)
T PRK15253 111 LPDN 114 (242)
T ss_pred CCcc
Confidence 6654
No 29
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=80.04 E-value=3.6 Score=28.71 Aligned_cols=57 Identities=14% Similarity=0.281 Sum_probs=33.6
Q ss_pred CCeeEEEEEEEcCCCCeE-EEEeeecCCCcEE--EeCCce-EeCCCCeEEEEEEeccCCcC
Q 029376 22 RKQISCSLQLSNKTDNYV-AFKVKTTNPKKYC--VRPNTG-VVLPRSTCDVIVTMQSQKEA 78 (194)
Q Consensus 22 ~k~~~~~L~L~N~s~~~V-AFKVKTT~P~~Y~--VrP~~G-iI~P~~s~~I~Vtlq~~~e~ 78 (194)
+....-.++++|.++.++ ..++.-..|.-+. +.|... -|.||++..+.+++.+....
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a 64 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADA 64 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT-
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCC
Confidence 445678899999987553 3555555688877 555543 69999999999999875433
No 30
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=79.62 E-value=29 Score=30.40 Aligned_cols=71 Identities=15% Similarity=0.152 Sum_probs=48.6
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCC-eEEEEeeecCC------CcEEEeCCceEeCCCCeEEEEEEecc-CCcCC
Q 029376 8 LNIEPQELQFPFELRKQISCSLQLSNKTDN-YVAFKVKTTNP------KKYCVRPNTGVVLPRSTCDVIVTMQS-QKEAP 79 (194)
Q Consensus 8 L~I~P~eL~F~~~~~k~~~~~L~L~N~s~~-~VAFKVKTT~P------~~Y~VrP~~GiI~P~~s~~I~Vtlq~-~~e~p 79 (194)
|.+.-..+.|+.. ....+|+|.|.++. ++.-....... .-|.|.|+.--|+|++...|.|...+ ...+|
T Consensus 28 i~l~~TRvIy~e~---~~~~sv~v~N~~~~~p~LVQsWvdd~~~~~~~~pFivtPPLfRlep~~~q~lRI~~~~~~~~LP 104 (257)
T PRK15274 28 IVPDRTRVIFNGN---ENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLP 104 (257)
T ss_pred EEeCceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEccCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCC
Confidence 3344457888853 44789999999875 44333322111 24999999999999999999999775 23455
Q ss_pred CC
Q 029376 80 PD 81 (194)
Q Consensus 80 ~d 81 (194)
.|
T Consensus 105 ~D 106 (257)
T PRK15274 105 QD 106 (257)
T ss_pred Cc
Confidence 44
No 31
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=79.52 E-value=17 Score=26.26 Aligned_cols=54 Identities=17% Similarity=0.359 Sum_probs=39.9
Q ss_pred CCeeEEEEEEEcCCCCeEE-EEeeecCCCcEEEe--CCce-EeCCCCeEEEEEEeccC
Q 029376 22 RKQISCSLQLSNKTDNYVA-FKVKTTNPKKYCVR--PNTG-VVLPRSTCDVIVTMQSQ 75 (194)
Q Consensus 22 ~k~~~~~L~L~N~s~~~VA-FKVKTT~P~~Y~Vr--P~~G-iI~P~~s~~I~Vtlq~~ 75 (194)
.......+...|.+..++. |.+.-..|+-+.++ |..| .|.||+.+.-.+.+...
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i~~~ 74 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKVENP 74 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEEECC
Confidence 3467889999999998776 88887778766655 5544 78898877666666543
No 32
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=79.38 E-value=30 Score=30.14 Aligned_cols=68 Identities=16% Similarity=0.145 Sum_probs=48.4
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeee----cC---CCcEEEeCCceEeCCCCeEEEEEEeccCCcCCC
Q 029376 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKT----TN---PKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPP 80 (194)
Q Consensus 8 L~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKT----T~---P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~p~ 80 (194)
|.+.-..+.|+.. ....+|+|.|.++.+ |-|++ .. ..-|.|.|+.--|+|++...|.|..... .+|.
T Consensus 42 i~l~~TRvIy~~~---~~~~sl~i~N~~~~p--~LvQsWvd~~~~~~~~pFiVtPPLfRLep~~~~~lRIi~~~~-~LP~ 115 (246)
T PRK15233 42 LRLGTTRVIYKED---APSTSFWIMNEKEYP--ILVQTQVYNDDKSSKAPFIVTPPILKVESNARTRLKVIPTSN-LFNK 115 (246)
T ss_pred EEeCceEEEEeCC---CcEEEEEEEcCCCCc--EEEEEEEecCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCc
Confidence 3344446777753 357899999988776 44444 11 1249999999999999999999998753 4665
Q ss_pred C
Q 029376 81 D 81 (194)
Q Consensus 81 d 81 (194)
|
T Consensus 116 D 116 (246)
T PRK15233 116 N 116 (246)
T ss_pred C
Confidence 5
No 33
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=76.23 E-value=49 Score=28.30 Aligned_cols=107 Identities=15% Similarity=0.252 Sum_probs=64.8
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeee--cCC----------CcEEEeCCceEeCCCCeEEEEEEeccC
Q 029376 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKT--TNP----------KKYCVRPNTGVVLPRSTCDVIVTMQSQ 75 (194)
Q Consensus 8 L~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKT--T~P----------~~Y~VrP~~GiI~P~~s~~I~Vtlq~~ 75 (194)
|.+.-..+.|+.. ....+|+|.|.++.+ |-|++ ... ..|.|.|+.--|+|++...+.|.....
T Consensus 20 i~l~~TRvIy~~~---~~~~si~i~N~~~~p--yLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~~ 94 (226)
T PRK15218 20 IYIYGTRIIYPAQ---KKDITVQLMNDGKRS--SLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKLAN 94 (226)
T ss_pred EEeCceEEEEcCC---CcEEEEEEEcCCCCc--EEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECCC
Confidence 4445457888853 446799999999876 44443 211 149999999999999999999998643
Q ss_pred CcCCCCCCCCceEEEEEEEeCCCCCccCcchhhhcccCCCeeeEEEeEEEEeC
Q 029376 76 KEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVA 128 (194)
Q Consensus 76 ~e~p~d~~~kDKFlVqs~~v~~~~~~~di~~~~F~k~~~~~v~e~KLrv~~~~ 128 (194)
.+|.|. .--|-+-...+|+..+ . . + .+..=......++++-|.+
T Consensus 95 -~LP~DR--ESlfwlnv~~IPp~~~--~-~-~--~~n~L~iairtrIKLfYRP 138 (226)
T PRK15218 95 -NLPGDR--ESLFYLNVLDIPPNSD--E-N-K--DKNIIKFALQNRIKLIYRP 138 (226)
T ss_pred -CCCcce--eEEEEEEEEEcCCCCC--C-c-C--cCcEEEEEeeeEEEEEEcc
Confidence 466552 1224444444554211 0 0 0 0000123456778888873
No 34
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=75.86 E-value=46 Score=28.97 Aligned_cols=70 Identities=19% Similarity=0.131 Sum_probs=47.3
Q ss_pred EEeCCeeEEeccCCCeeEEEEEEEcCCCC-eEEEEeee--cCCC----cEEEeCCceEeCCCCeEEEEEEecc-CCcCCC
Q 029376 9 NIEPQELQFPFELRKQISCSLQLSNKTDN-YVAFKVKT--TNPK----KYCVRPNTGVVLPRSTCDVIVTMQS-QKEAPP 80 (194)
Q Consensus 9 ~I~P~eL~F~~~~~k~~~~~L~L~N~s~~-~VAFKVKT--T~P~----~Y~VrP~~GiI~P~~s~~I~Vtlq~-~~e~p~ 80 (194)
.+.-..+.|+.. ....+++|+|.+++ ++.-.... ...+ -|.|-|+.--|+||+...|.|.... ...+|.
T Consensus 28 ~l~~TRVIy~~~---~~~~sv~i~N~~~~~p~LvQsWvd~~~~~~~~~pFiVtPPlfRl~p~~~~~lRI~~~~~~~~LP~ 104 (250)
T PRK15285 28 APDRTRLVFRGE---DKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGMPALASLPQ 104 (250)
T ss_pred EeCccEEEEcCC---CceEEEEEEeCCCCCcEEEEEEeeCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCC
Confidence 344457888853 44689999999865 43322221 1211 3999999999999999999998765 234555
Q ss_pred C
Q 029376 81 D 81 (194)
Q Consensus 81 d 81 (194)
|
T Consensus 105 D 105 (250)
T PRK15285 105 D 105 (250)
T ss_pred C
Confidence 4
No 35
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=75.01 E-value=13 Score=27.19 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=40.9
Q ss_pred cCCCeeEEEEEEEcCCCCe--------EEEEeeecCCC--cEEEeCCceEeCCCCeEEEEEEeccC
Q 029376 20 ELRKQISCSLQLSNKTDNY--------VAFKVKTTNPK--KYCVRPNTGVVLPRSTCDVIVTMQSQ 75 (194)
Q Consensus 20 ~~~k~~~~~L~L~N~s~~~--------VAFKVKTT~P~--~Y~VrP~~GiI~P~~s~~I~Vtlq~~ 75 (194)
..++.....++++|+++.+ .|+-|--|.-. ....+-..+-|.||++..+.+.+.+.
T Consensus 12 ~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 12 VVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPS 77 (107)
T ss_dssp BTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HH
T ss_pred cCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEce
Confidence 3577889999999999987 56666655443 25677889999999999999999765
No 36
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=71.68 E-value=16 Score=26.12 Aligned_cols=46 Identities=26% Similarity=0.202 Sum_probs=31.7
Q ss_pred eEEEEEEEcCCCCeEEEEeeecCCCcEE-EeCCceEeCCCCeEEEEEEec
Q 029376 25 ISCSLQLSNKTDNYVAFKVKTTNPKKYC-VRPNTGVVLPRSTCDVIVTMQ 73 (194)
Q Consensus 25 ~~~~L~L~N~s~~~VAFKVKTT~P~~Y~-VrP~~GiI~P~~s~~I~Vtlq 73 (194)
..-.|+|.|.+...+.|.|.... |. -.|-.=.|.||++..+.+-+.
T Consensus 20 g~l~l~l~N~g~~~~~~~v~~~~---y~~~~~~~~~v~ag~~~~~~w~l~ 66 (89)
T PF05506_consen 20 GNLRLTLSNPGSAAVTFTVYDNA---YGGGGPWTYTVAAGQTVSLTWPLA 66 (89)
T ss_pred CEEEEEEEeCCCCcEEEEEEeCC---cCCCCCEEEEECCCCEEEEEEeec
Confidence 36789999999999999999721 11 223333455588877777663
No 37
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=68.05 E-value=23 Score=26.12 Aligned_cols=53 Identities=17% Similarity=0.361 Sum_probs=35.4
Q ss_pred CCeeEEEEEEEcCCCCeEE-EEeeecCCCc--EEEeCC-ceEeCCCCeEEEEEEecc
Q 029376 22 RKQISCSLQLSNKTDNYVA-FKVKTTNPKK--YCVRPN-TGVVLPRSTCDVIVTMQS 74 (194)
Q Consensus 22 ~k~~~~~L~L~N~s~~~VA-FKVKTT~P~~--Y~VrP~-~GiI~P~~s~~I~Vtlq~ 74 (194)
.....-.+...|++..++. |.+.-..|+. ..+.|. ...|.|+..+.-.+.+..
T Consensus 23 ~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v~~ 79 (115)
T PF02883_consen 23 PNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKVEN 79 (115)
T ss_dssp TTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEEEE
T ss_pred CCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEEEE
Confidence 5677889999999998776 7766655554 455566 458999887776665544
No 38
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=65.94 E-value=59 Score=25.01 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=23.4
Q ss_pred EeccCCCeeEEEEEEEcCCCCeEEEEee
Q 029376 17 FPFELRKQISCSLQLSNKTDNYVAFKVK 44 (194)
Q Consensus 17 F~~~~~k~~~~~L~L~N~s~~~VAFKVK 44 (194)
+....+....-.|+|+|.+++.+.|+|.
T Consensus 21 L~~~P~q~~~l~v~i~N~s~~~~tv~v~ 48 (121)
T PF06030_consen 21 LKVKPGQKQTLEVRITNNSDKEITVKVS 48 (121)
T ss_pred EEeCCCCEEEEEEEEEeCCCCCEEEEEE
Confidence 3345677788999999999999999986
No 39
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=65.69 E-value=5.7 Score=26.91 Aligned_cols=43 Identities=26% Similarity=0.357 Sum_probs=27.0
Q ss_pred EEEEcCCCCeEEEE-eeecCCC-cEEEeCCceEeCCCCeEEEEEEe
Q 029376 29 LQLSNKTDNYVAFK-VKTTNPK-KYCVRPNTGVVLPRSTCDVIVTM 72 (194)
Q Consensus 29 L~L~N~s~~~VAFK-VKTT~P~-~Y~VrP~~GiI~P~~s~~I~Vtl 72 (194)
|+++|+|..+|.|- ++....+ ...+ ...+.|.|+++..+.+.-
T Consensus 1 L~v~NpTPy~vtl~~~~~~~~~~~~~~-~~~~mi~P~s~~~~~~~~ 45 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSLKLNGGGKKKKI-DNSGMIAPFSSKSFPLPA 45 (68)
T ss_dssp EEEEE-SSS-EEEEEEEETHHHCCEEC-CCETEE-TTEEEEEETST
T ss_pred CEEECCCCcEEEEEeeeeccccccccc-CCceEECCCCceEEeccC
Confidence 78999999999997 4433333 3343 334499999998876543
No 40
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=64.94 E-value=92 Score=26.89 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=61.0
Q ss_pred cceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeee---cCC---------------CcEEEeCCceEeCCCCeEE
Q 029376 6 ELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKT---TNP---------------KKYCVRPNTGVVLPRSTCD 67 (194)
Q Consensus 6 ~lL~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKT---T~P---------------~~Y~VrP~~GiI~P~~s~~ 67 (194)
--|.|.|-.+.+.. ..+..+.++|.|.++.+..++|+. ++| ..-.+-|..-+|.||++..
T Consensus 16 a~l~V~Pi~~~i~a--~~~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~~q~ 93 (234)
T PRK15308 16 ANMLVYPMAAEIGA--GREEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGTTRT 93 (234)
T ss_pred ceEEEEEeEEEecC--CCcceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCCeEE
Confidence 45788998888764 234578999999999988887653 232 1367889999999999999
Q ss_pred EEEEeccCCcCCCCCCCCceEEEEEEEeCC
Q 029376 68 VIVTMQSQKEAPPDMQCKDKFLLQGVVASP 97 (194)
Q Consensus 68 I~Vtlq~~~e~p~d~~~kDKFlVqs~~v~~ 97 (194)
|.+..+.. + + ...-|.|...++++
T Consensus 94 IRli~lg~---~-~--kE~~YRl~~~pvp~ 117 (234)
T PRK15308 94 VRVISLQA---P-E--REEAWRVYFEPVAE 117 (234)
T ss_pred EEEEEcCC---C-C--cEEEEEEEEEecCC
Confidence 99886653 1 1 24556676677664
No 41
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=64.88 E-value=34 Score=25.05 Aligned_cols=53 Identities=15% Similarity=0.222 Sum_probs=33.8
Q ss_pred CCeeEEEEEEEcCCCCeEE-----EEeeecCCCcEEEeC---------CceEeCCCCeEEEEEEecc
Q 029376 22 RKQISCSLQLSNKTDNYVA-----FKVKTTNPKKYCVRP---------NTGVVLPRSTCDVIVTMQS 74 (194)
Q Consensus 22 ~k~~~~~L~L~N~s~~~VA-----FKVKTT~P~~Y~VrP---------~~GiI~P~~s~~I~Vtlq~ 74 (194)
++-+.-.++++|.++..+. |++.+.+-..|.... ..+-|.||+++.-.|...-
T Consensus 35 ~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~v 101 (123)
T PF11611_consen 35 NKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEV 101 (123)
T ss_dssp SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEE
T ss_pred CEEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEE
Confidence 3446789999999998886 688877777776554 3478999999999888764
No 42
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=60.98 E-value=66 Score=30.28 Aligned_cols=52 Identities=13% Similarity=0.154 Sum_probs=39.3
Q ss_pred eeEEEEEEEcCCCCeEEEEeeecCCCcEEEe-C-CceEeCCCCeEEEEEEeccC
Q 029376 24 QISCSLQLSNKTDNYVAFKVKTTNPKKYCVR-P-NTGVVLPRSTCDVIVTMQSQ 75 (194)
Q Consensus 24 ~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~Vr-P-~~GiI~P~~s~~I~Vtlq~~ 75 (194)
+-...++|.|++.++..|.++........+. + +.=.|+||+..++.|++...
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~ 400 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTP 400 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEec
Confidence 3468999999999988888887655444433 2 24488999999998888765
No 43
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=59.34 E-value=12 Score=30.64 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=26.6
Q ss_pred EEeeecCCCcEEEeCCceE--eCCCCeEEEEEEeccC
Q 029376 41 FKVKTTNPKKYCVRPNTGV--VLPRSTCDVIVTMQSQ 75 (194)
Q Consensus 41 FKVKTT~P~~Y~VrP~~Gi--I~P~~s~~I~Vtlq~~ 75 (194)
|+|.--+-+.|++.|.-|+ |.||+++.|.+.-...
T Consensus 69 f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~~~~~w 105 (164)
T PF03173_consen 69 FKITHINGDLHKLTPTAGFKGLAPGESLEIPFVGEYW 105 (164)
T ss_dssp EEEEE-STTEEEEEE-TT---B-TTEEEEEEEEEES-
T ss_pred eEEEEEcCeEEEEeECCCCCccCCCCEEEEEEEcccc
Confidence 7788888999999999998 8999999999986653
No 44
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=56.25 E-value=69 Score=23.24 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=33.6
Q ss_pred EEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCceEeCCCCeEEEEEEec
Q 029376 9 NIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQ 73 (194)
Q Consensus 9 ~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~Vtlq 73 (194)
.++|.++..+. + ....|.++|..+..-.|-+.. +.+ ...|.||++..+.++-.
T Consensus 31 ~f~P~~i~v~~--G--~~v~l~~~N~~~~~h~~~i~~-----~~~---~~~l~~g~~~~~~f~~~ 83 (104)
T PF13473_consen 31 GFSPSTITVKA--G--QPVTLTFTNNDSRPHEFVIPD-----LGI---SKVLPPGETATVTFTPL 83 (104)
T ss_dssp EEES-EEEEET--T--CEEEEEEEE-SSS-EEEEEGG-----GTE---EEEE-TT-EEEEEEEE-
T ss_pred eEecCEEEEcC--C--CeEEEEEEECCCCcEEEEECC-----Cce---EEEECCCCEEEEEEcCC
Confidence 56788777664 2 235699999999888888776 111 16799999999998644
No 45
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=50.66 E-value=31 Score=25.29 Aligned_cols=52 Identities=12% Similarity=0.199 Sum_probs=34.2
Q ss_pred eeEEEEEEEcCCCCeE-EEEeeec-----------------CCCcEEEeCCc--eEeCCCCeEEEEEEeccC
Q 029376 24 QISCSLQLSNKTDNYV-AFKVKTT-----------------NPKKYCVRPNT--GVVLPRSTCDVIVTMQSQ 75 (194)
Q Consensus 24 ~~~~~L~L~N~s~~~V-AFKVKTT-----------------~P~~Y~VrP~~--GiI~P~~s~~I~Vtlq~~ 75 (194)
.....|+|+|.++..| .|+|.=+ .-..|.|+|.. +.|.||+++.+-+.....
T Consensus 14 Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v~~~~wn~~i~~G~s~~~Gf~~~~~ 85 (101)
T PF00553_consen 14 GFQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQSGNTVTVTNPSWNGTIAPGGSVTFGFQASGS 85 (101)
T ss_dssp EEEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEETTEEEEEESSTCSEEEESEEEEEEEEEEES
T ss_pred CeEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEecCCEEEEEcCCcCcccCCCCeEEEEEEEeCC
Confidence 3456788888887765 2443322 23578888764 699999998876665543
No 46
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=47.82 E-value=61 Score=23.56 Aligned_cols=62 Identities=13% Similarity=0.174 Sum_probs=35.6
Q ss_pred CcceEEeCCeeEEeccCCCeeEEEEEEEcCCC--CeEEEEeeecCCCcEEEeC----CceEeCCCCeEEEEEEe
Q 029376 5 GELLNIEPQELQFPFELRKQISCSLQLSNKTD--NYVAFKVKTTNPKKYCVRP----NTGVVLPRSTCDVIVTM 72 (194)
Q Consensus 5 ~~lL~I~P~eL~F~~~~~k~~~~~L~L~N~s~--~~VAFKVKTT~P~~Y~VrP----~~GiI~P~~s~~I~Vtl 72 (194)
..-+.+.|..|++..- . .++++|... +.+.|.=.......-...+ ..+.+.||++..+.++-
T Consensus 9 ~g~~~F~P~~i~v~~G--~----~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~ 76 (99)
T TIGR02656 9 KGALVFEPAKISIAAG--D----TVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFST 76 (99)
T ss_pred CCceeEeCCEEEECCC--C----EEEEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeCC
Confidence 4557899999988752 2 367888743 5555532211111100111 34578899998887663
No 47
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=47.72 E-value=1e+02 Score=22.05 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=14.3
Q ss_pred eEEEEEEEcCCCCeEEEEeee
Q 029376 25 ISCSLQLSNKTDNYVAFKVKT 45 (194)
Q Consensus 25 ~~~~L~L~N~s~~~VAFKVKT 45 (194)
+.-.|+|+|.+++.|-+...|
T Consensus 2 v~~~l~v~N~s~~~v~l~f~s 22 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPS 22 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESS
T ss_pred EEEEEEEEeCCCCeEEEEeCC
Confidence 356788888888888877665
No 48
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=47.38 E-value=1.1e+02 Score=25.20 Aligned_cols=53 Identities=13% Similarity=0.275 Sum_probs=37.5
Q ss_pred CCeeEEEEEEEcCCCCeEEEEeeecC----CCcEEEeC-----CceEeCCCCeEEEEEEeccC
Q 029376 22 RKQISCSLQLSNKTDNYVAFKVKTTN----PKKYCVRP-----NTGVVLPRSTCDVIVTMQSQ 75 (194)
Q Consensus 22 ~k~~~~~L~L~N~s~~~VAFKVKTT~----P~~Y~VrP-----~~GiI~P~~s~~I~Vtlq~~ 75 (194)
++.+...++|.|.++. -||.|+=+. ++.|.+.- ....|+||+++.-.+++.|.
T Consensus 37 g~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~ 98 (181)
T PF05753_consen 37 GEDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPK 98 (181)
T ss_pred CcEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeee
Confidence 6788999999999988 689999877 24444321 13566777777766666654
No 49
>smart00637 CBD_II CBD_II domain.
Probab=44.79 E-value=1.1e+02 Score=21.67 Aligned_cols=47 Identities=9% Similarity=0.203 Sum_probs=29.7
Q ss_pred EEEEEEEcCCCCeE-----EEEeee-------------cCCCcEEEeCCc--eEeCCCCeEEEEEEe
Q 029376 26 SCSLQLSNKTDNYV-----AFKVKT-------------TNPKKYCVRPNT--GVVLPRSTCDVIVTM 72 (194)
Q Consensus 26 ~~~L~L~N~s~~~V-----AFKVKT-------------T~P~~Y~VrP~~--GiI~P~~s~~I~Vtl 72 (194)
...|+|+|.++.++ .|.+-. .....|.++|.. +.|.||+++.+-+..
T Consensus 9 ~~~v~vtN~~~~~~~~W~v~~~~~~~~~i~~~Wn~~~~~~g~~~~~~~~~wn~~i~~G~s~~~gf~~ 75 (92)
T smart00637 9 TANVTVTNTGSSAINGWTVTFDLPGGQTVTNSWNATVSQSGGHVTATNASWNGTIAPGGSVSFGFQG 75 (92)
T ss_pred EEEEEEEeCCCCcccCeEEEEEcCCCcEEeeeEEEEEEecCCEEEEecCccccccCCCCEEEEEEEe
Confidence 46778888766443 333311 123368888644 799999988876655
No 50
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=36.02 E-value=1.4e+02 Score=20.50 Aligned_cols=54 Identities=9% Similarity=0.057 Sum_probs=33.5
Q ss_pred CCeeEEEEEEEcCCCCe-EEEEeeecCCCcEEEeCCceEeCCCCeEEEEEEeccC
Q 029376 22 RKQISCSLQLSNKTDNY-VAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQ 75 (194)
Q Consensus 22 ~k~~~~~L~L~N~s~~~-VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~ 75 (194)
++...-.++|+|.+... =.|+|+-...+...-.-..+-|.||++..+.+++.+.
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLDGNSVSTVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEEEEESEB-TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEECCceeccEEECCcCCCcEEEEEEEEEeC
Confidence 56778899999997743 4566664333333222333788899999998888764
No 51
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=35.45 E-value=85 Score=27.15 Aligned_cols=42 Identities=7% Similarity=0.110 Sum_probs=29.4
Q ss_pred EEEEEcCCCCeEEEE-eeecCCCcEEEeCCceEeCCCCeEEEEE
Q 029376 28 SLQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGVVLPRSTCDVIV 70 (194)
Q Consensus 28 ~L~L~N~s~~~VAFK-VKTT~P~~Y~VrP~~GiI~P~~s~~I~V 70 (194)
.|+++|+|..++.|. ++....+ -.+....|+|.|+++..+.+
T Consensus 177 ~l~v~Nptpyyitl~~l~~~~~~-~~~~~~~~mv~P~s~~~~~l 219 (253)
T PRK15249 177 GIVIVNPQPWFASLSNLNVKVNG-ASYNLDADMIAPFSSQTWWL 219 (253)
T ss_pred EEEEECCCceEEEeeeeeeccCC-eecCCCCceECCCCccEEEc
Confidence 499999999999886 3321222 12223458999999998875
No 52
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.38 E-value=75 Score=27.14 Aligned_cols=44 Identities=27% Similarity=0.299 Sum_probs=33.0
Q ss_pred EEEEEEcCCCCeEEEE--eeecCCCcEEEeCCceEeCCCCeEEEEEEe
Q 029376 27 CSLQLSNKTDNYVAFK--VKTTNPKKYCVRPNTGVVLPRSTCDVIVTM 72 (194)
Q Consensus 27 ~~L~L~N~s~~~VAFK--VKTT~P~~Y~VrP~~GiI~P~~s~~I~Vtl 72 (194)
..|+++|+|..+|.|- .-+.+-++.. -+.+.|.|+++..+.+.-
T Consensus 165 ~~l~v~Nptpy~vtl~~~~l~~~~~~~~--~~~~mv~P~s~~~~~l~~ 210 (235)
T COG3121 165 NLLTVKNPTPYYVTLANLTLNVGGRKLG--LNSGMVAPFSTRQFPLPS 210 (235)
T ss_pred CEEEEECCCCcEEEEEEEEEeeCceecC--CCcceECCCccceeecCC
Confidence 6899999999999998 4443333333 788999999998866543
No 53
>PF08402 TOBE_2: TOBE domain; InterPro: IPR013611 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. Probably involved in the recognition of small ligands such as molybdenum (e.g. P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT). Found in ABC transporters immediately after the ATPase domain. A strong RPE motif is found at the presumed N terminus of the domain. ; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1Q12_A 1Q1B_C 2AWN_D 3RLF_B 3PUX_B 2R6G_B 3PUV_B 1Q1E_A 3PV0_B 2AWO_A ....
Probab=30.50 E-value=1.5e+02 Score=19.10 Aligned_cols=65 Identities=15% Similarity=0.256 Sum_probs=40.9
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEe-CCce---EeCCCCeEEEEEEe
Q 029376 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVR-PNTG---VVLPRSTCDVIVTM 72 (194)
Q Consensus 8 L~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~Vr-P~~G---iI~P~~s~~I~Vtl 72 (194)
|.|.|+.|.+.........+.+.-.=-.....-+.+++.......+. ++.. .+.+|+.+.|.+..
T Consensus 1 l~iRPE~i~l~~~~~~~~~g~V~~~~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~~~~ 69 (75)
T PF08402_consen 1 LGIRPEDIRLSPEGENRLPGTVVSVEFLGSETRYTVRLEGGEELVVRVPNSQRDSPLEPGDEVRLSWDP 69 (75)
T ss_dssp EEE-GGGEEEESSTTTEEEEEEEEEEEESSEEEEEEEETTSSEEEEEEESSG-TTT--TTSEEEEEEEG
T ss_pred CEECcceeEEECCCCCeEEEEEEEEEECCCEEEEEEEECCCCEEEEEecCccccCCCCCCCEEEEEECc
Confidence 56889877774222336666666666666777788888777764443 4444 68899988877754
No 54
>PF09640 DUF2027: Domain of unknown function (DUF2027); InterPro: IPR018598 This protein domain is of unknown function. though putatively involved in DNA mismatch repair. It is associated with IPR002625 from INTERPRO. ; PDB: 2HUH_A.
Probab=30.21 E-value=90 Score=25.68 Aligned_cols=67 Identities=12% Similarity=0.184 Sum_probs=44.7
Q ss_pred eEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCceEeCCCCeEEEEEEeccCCcCCCCCCCCceEEEEEEEeCCC
Q 029376 25 ISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPG 98 (194)
Q Consensus 25 ~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~p~d~~~kDKFlVqs~~v~~~ 98 (194)
..--.-|.|-|+.++-|-.-+...+.|.+| +.|.|+|+..+-|.-.-... + ..-.+..||.+....+
T Consensus 18 T~fE~YlVNDSNYy~~y~y~~~~g~~w~lr-s~G~iEPNtKl~ieef~~~e--L----N~~~~v~vQ~iAyK~~ 84 (162)
T PF09640_consen 18 TRFECYLVNDSNYYLHYTYLTAEGNSWTLR-SAGEIEPNTKLFIEEFSKEE--L----NDLERVAVQLIAYKKD 84 (162)
T ss_dssp --EEEEEEE-SSSEEEEEEEEEETTEEEEE-EEEEE-TTEEEEEEEE-GGG--G----GG-SSEEEEEEEE-SS
T ss_pred CceEEEEEecCccEEEEEEEeccCCeEEEE-ecceECCCceeehhhcCHHH--h----hccceeEEEEEEEcCC
Confidence 345677899999999999999888899998 68999999888775433221 1 1245566666665544
No 55
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=29.80 E-value=1.6e+02 Score=25.30 Aligned_cols=43 Identities=30% Similarity=0.437 Sum_probs=29.7
Q ss_pred EEEEEEcCCCCeEEEE-eeec-CCCcEEEeCCceEeCCCCeEEEEEE
Q 029376 27 CSLQLSNKTDNYVAFK-VKTT-NPKKYCVRPNTGVVLPRSTCDVIVT 71 (194)
Q Consensus 27 ~~L~L~N~s~~~VAFK-VKTT-~P~~Y~VrP~~GiI~P~~s~~I~Vt 71 (194)
..|+++|+|..++.|- ++-. +.+.+.+ ..+.|.|+++..+.+-
T Consensus 173 ~~L~v~Nptpy~itl~~l~~~~~g~~~~~--~~~mi~P~s~~~~~l~ 217 (246)
T PRK09926 173 ASLRVTNPTPYYVSFSSGDLEAGGKRYPV--DSKMIAPFSDESMKVK 217 (246)
T ss_pred EEEEEECCCceEEEEEeeeeecCCeeccc--CcceECCCCcceEecC
Confidence 4599999999999875 3322 2233333 3479999999888753
No 56
>smart00605 CW CW domain.
Probab=28.66 E-value=72 Score=22.89 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=14.2
Q ss_pred EEEEEcC-CCCeEEEEeeecCCC
Q 029376 28 SLQLSNK-TDNYVAFKVKTTNPK 49 (194)
Q Consensus 28 ~L~L~N~-s~~~VAFKVKTT~P~ 49 (194)
.++-.+. +...||||+.++.+.
T Consensus 58 ~v~~~~~~~~~~VAfK~~~~~~~ 80 (94)
T smart00605 58 TVKKLSSSSGKKVAFKVSTDQPS 80 (94)
T ss_pred EEEEccCCCCcEEEEEEeCCCCC
Confidence 4444444 458899999865544
No 57
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=28.62 E-value=2.3e+02 Score=21.81 Aligned_cols=53 Identities=13% Similarity=0.158 Sum_probs=32.5
Q ss_pred CCeeEEEEEEEcCCCCeEEEE---ee------------ecCCCcEEEeC--CceEeCCCCeEEEEEEecc
Q 029376 22 RKQISCSLQLSNKTDNYVAFK---VK------------TTNPKKYCVRP--NTGVVLPRSTCDVIVTMQS 74 (194)
Q Consensus 22 ~k~~~~~L~L~N~s~~~VAFK---VK------------TT~P~~Y~VrP--~~GiI~P~~s~~I~Vtlq~ 74 (194)
.....-..+|.|.++.+++|= +. +-.|..|.... ...-|.||++..+.+.+..
T Consensus 67 ~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~ 136 (149)
T PF11906_consen 67 PGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLED 136 (149)
T ss_pred CCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeC
Confidence 344556667777777665542 11 11344444433 3445999999999998864
No 58
>PF13205 Big_5: Bacterial Ig-like domain
Probab=28.61 E-value=2.1e+02 Score=20.09 Aligned_cols=56 Identities=14% Similarity=0.296 Sum_probs=36.2
Q ss_pred eeEEeccCCC-eeEEEEEEEc--CCCCeEEEEeeecCCCcEEEeCCceEeCCCCeEEEEEEe
Q 029376 14 ELQFPFELRK-QISCSLQLSN--KTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTM 72 (194)
Q Consensus 14 eL~F~~~~~k-~~~~~L~L~N--~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~Vtl 72 (194)
.|.|..+.+. .....+.+.+ ....+|.+. ....+.+.++|. +-|.+|..+.|.|.-
T Consensus 26 ~i~Fs~~v~~~s~~~~~~~~~~~~~~~~v~~~--~~~~~~~~i~p~-~~L~~~t~Y~v~i~~ 84 (107)
T PF13205_consen 26 VITFSEPVDPASVSSAITITDSNGSGVPVSFS--SWDGNTLTITPS-QPLKPGTTYTVTIDS 84 (107)
T ss_pred EEEECCceecCccceEEEEEecCCCcEEEEEE--EccCCEEEEEEC-CcCCCCCEEEEEECC
Confidence 5677766543 2345556643 444555555 444588999998 567889999988854
No 59
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=28.27 E-value=1.4e+02 Score=25.32 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=29.5
Q ss_pred EEEEEcCCCCeEEEE-eeecCCCcEEEeCCceEeCCCCeEEEEEE
Q 029376 28 SLQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGVVLPRSTCDVIVT 71 (194)
Q Consensus 28 ~L~L~N~s~~~VAFK-VKTT~P~~Y~VrP~~GiI~P~~s~~I~Vt 71 (194)
.|++.|+|..+|.|- ++.. .+. +. ..|.|.|+++..+.+.
T Consensus 158 ~l~v~NptPyyitl~~l~~~-~~~--~~-~~~mI~P~s~~~~~~~ 198 (226)
T PRK15295 158 VITVNNPTPYYMNFASVTLN-SHE--VK-SATFVPPKSSASFKLG 198 (226)
T ss_pred EEEEECCCceEEEEEEEEEC-Ccc--cC-CCceECCCCccEEEcc
Confidence 499999999999875 5542 222 22 3589999999988753
No 60
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=27.73 E-value=79 Score=21.05 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=12.9
Q ss_pred eEEEEEEEcCCCCeEEEEe
Q 029376 25 ISCSLQLSNKTDNYVAFKV 43 (194)
Q Consensus 25 ~~~~L~L~N~s~~~VAFKV 43 (194)
+...-++...+.+.||||+
T Consensus 53 i~~v~~~~~~~~~~VA~K~ 71 (71)
T PF08277_consen 53 ISTVQKTDSSSGNKVAFKI 71 (71)
T ss_pred EEEEEEeecCCCeEEEEEC
Confidence 4444455556669999996
No 61
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=27.04 E-value=2.1e+02 Score=19.65 Aligned_cols=60 Identities=7% Similarity=0.071 Sum_probs=37.9
Q ss_pred CCeeEEeccCCCeeEEEEEEEcCCC--CeEEEEeee---cCCCcEEEeCCceEeCCCCeEEEEEEe
Q 029376 12 PQELQFPFELRKQISCSLQLSNKTD--NYVAFKVKT---TNPKKYCVRPNTGVVLPRSTCDVIVTM 72 (194)
Q Consensus 12 P~eL~F~~~~~k~~~~~L~L~N~s~--~~VAFKVKT---T~P~~Y~VrP~~GiI~P~~s~~I~Vtl 72 (194)
|..+.+...........|.|.|-.. -.....|.+ +..+.|.+.++.+ |.++....|.|.-
T Consensus 14 ~~~I~W~~~~~~~~~~~I~L~~g~~~~~~~~~~ia~~v~~~~gs~~~~~p~~-l~~~~~Y~i~~~~ 78 (93)
T PF10342_consen 14 PITITWTSDGTDPGNVTIYLCNGNNTNLNFVQTIASNVSNSDGSYTWTIPSD-LPSGGDYFIQIVN 78 (93)
T ss_pred cEEEEEeCCCCCCcEEEEEEEcCCCCCcceeEEEEecccCCCCEEEEEcCCC-CCCCCcEEEEEEE
Confidence 3466776644455778999999766 222244432 2337888888776 5566677777773
No 62
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=26.68 E-value=1.6e+02 Score=25.28 Aligned_cols=41 Identities=27% Similarity=0.285 Sum_probs=28.5
Q ss_pred EEEEEcCCCCeEEEEeeecCCCcEEEeCCceEeCCCCeEEEEEE
Q 029376 28 SLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVT 71 (194)
Q Consensus 28 ~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~Vt 71 (194)
.|++.|+|..+|.|.=-.-+.+. + ...+.|.|.++..+.+.
T Consensus 163 ~l~v~NpTPyyvtl~~l~v~~~~--~-~~~~miaPfs~~~~~~~ 203 (234)
T PRK15192 163 GATVRNPTPYYVTLFLLRANERA--Q-DNAGVVAPFATRQTDWC 203 (234)
T ss_pred EEEEECCCCcEEEEEeEEEcCcc--c-CCCceECCCCccEEecc
Confidence 39999999999998622222222 2 24578999999888763
No 63
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=26.01 E-value=1.7e+02 Score=25.12 Aligned_cols=39 Identities=23% Similarity=0.442 Sum_probs=28.1
Q ss_pred EEEEEcCCCCeEEEEeeecCCCcEEEeCCceEeCCCCeEEEEE
Q 029376 28 SLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIV 70 (194)
Q Consensus 28 ~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~V 70 (194)
.|++.|+|-.+|.|---.-..+. + ....|.|+++..+.+
T Consensus 154 ~l~v~NpTPyyvtl~~l~~~~~~--~--~~~mi~P~s~~~~~~ 192 (233)
T PRK15246 154 TIRIVNPTSWYMSLTLTMDNKKS--I--GDIMVAPKTALDVPL 192 (233)
T ss_pred EEEEECCCCcEEEEEeEEECCcc--c--CcceECCCCccEEEc
Confidence 49999999999998733323222 2 246899999988864
No 64
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=25.32 E-value=87 Score=26.22 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=21.0
Q ss_pred CeEEEEeeecCCCcEEEeCCceEeCCCCeEEEEEEec
Q 029376 37 NYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQ 73 (194)
Q Consensus 37 ~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~Vtlq 73 (194)
|+|+||+ |...-|.||+++++.+...
T Consensus 116 Hrvs~tl-----------p~wqslapG~s~~~~~~Yy 141 (180)
T PF06483_consen 116 HRVSFTL-----------PAWQSLAPGASVELDMVYY 141 (180)
T ss_pred EEEEEEC-----------CCccccCCCCEEEEeEEEE
Confidence 6666666 8889999999999988753
No 65
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=25.31 E-value=2.7e+02 Score=20.18 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=23.0
Q ss_pred CCeeEEEEEEEcCCCCe--EEEEeeecCCCcEEEeCC
Q 029376 22 RKQISCSLQLSNKTDNY--VAFKVKTTNPKKYCVRPN 56 (194)
Q Consensus 22 ~k~~~~~L~L~N~s~~~--VAFKVKTT~P~~Y~VrP~ 56 (194)
+....+.+.|+|.++.+ +.||+-==..+-+.|.|.
T Consensus 23 ~g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~ 59 (94)
T PF07233_consen 23 NGLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPE 59 (94)
T ss_dssp CCEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--T
T ss_pred CCeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCC
Confidence 66788999999999866 777776667777777766
No 66
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=22.99 E-value=1.2e+02 Score=27.91 Aligned_cols=71 Identities=28% Similarity=0.454 Sum_probs=42.2
Q ss_pred CCCCCcc-eEEeCC-eeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecC----------CCcE-----EEeCCce-EeCC
Q 029376 1 MMSTGEL-LNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN----------PKKY-----CVRPNTG-VVLP 62 (194)
Q Consensus 1 m~~~~~l-L~I~P~-eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~----------P~~Y-----~VrP~~G-iI~P 62 (194)
|||.+.| |.+.=. ||.|.++ .++.+++++|.|++.|- |||..- ...| ...-.-| -|.|
T Consensus 189 lmS~~~lhLevsLDkEiYyHGE---~isvnV~V~NNsnKtVK-kIK~~V~Q~adi~Lfs~aqy~~~VA~~E~~eGc~v~P 264 (402)
T KOG3865|consen 189 LMSDGPLHLEVSLDKEIYYHGE---PISVNVHVTNNSNKTVK-KIKISVRQVADICLFSTAQYKKPVAMEETDEGCPVAP 264 (402)
T ss_pred ccCCCceEEEEEecchheecCC---ceeEEEEEecCCcceee-eeEEEeEeeceEEEEecccccceeeeeecccCCccCC
Confidence 5666443 334433 6777754 67899999999987653 555431 1111 1112222 4678
Q ss_pred CCeEEEEEEeccC
Q 029376 63 RSTCDVIVTMQSQ 75 (194)
Q Consensus 63 ~~s~~I~Vtlq~~ 75 (194)
|++..=+.++-|.
T Consensus 265 gstl~Kvf~l~Pl 277 (402)
T KOG3865|consen 265 GSTLSKVFTLTPL 277 (402)
T ss_pred CCeeeeeEEechh
Confidence 8887777777654
No 67
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=22.30 E-value=1.9e+02 Score=24.46 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=27.9
Q ss_pred EEEEEcCCCCeEEEE-eeecCCCcEEEeCCceEeCCCCeEEEEE
Q 029376 28 SLQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGVVLPRSTCDVIV 70 (194)
Q Consensus 28 ~L~L~N~s~~~VAFK-VKTT~P~~Y~VrP~~GiI~P~~s~~I~V 70 (194)
.|+++|+|..++.|- ++-. .+. + ...|.|.|+++..+.+
T Consensus 161 ~l~v~Nptpy~vtl~~l~~~-~~~--~-~~~~mv~P~s~~~~~l 200 (227)
T PRK15299 161 TLTVKNPTPYYMNFATLSVG-SQK--V-KAPRYVAPFGNAQYTL 200 (227)
T ss_pred EEEEECCCccEEEEEeEEEC-Ccc--c-CCCceECCCCccEEEc
Confidence 599999999999874 3332 222 2 2358999999988875
No 68
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=22.02 E-value=1.8e+02 Score=24.65 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=29.4
Q ss_pred EEEEEcCCCCeEEEE-e-eec-CCCcEEEeCCceEeCCCCeEEEEEE
Q 029376 28 SLQLSNKTDNYVAFK-V-KTT-NPKKYCVRPNTGVVLPRSTCDVIVT 71 (194)
Q Consensus 28 ~L~L~N~s~~~VAFK-V-KTT-~P~~Y~VrP~~GiI~P~~s~~I~Vt 71 (194)
.|+++|.|..++.|- + +.. +.+.+.+ ..|.|.|+++..+.+.
T Consensus 156 ~l~v~N~~p~~i~l~~l~~~~~~g~~~~~--~~~~v~P~s~~~~~l~ 200 (230)
T PRK09918 156 NLVVSNPSPYVVRLGQQVILLPSGKVVAL--PKPYILPGESLTVAIT 200 (230)
T ss_pred EEEEECCCCEEEEEeccEEEccCCceecc--CCceECCCceEEEEcc
Confidence 599999999999875 2 221 3333333 3489999999998753
No 69
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=21.99 E-value=4.3e+02 Score=24.53 Aligned_cols=59 Identities=10% Similarity=0.194 Sum_probs=38.3
Q ss_pred EEEEEEcCCCCeEEEEeeecCCCcEEEeCCceEeCCCCeEEEEEEeccCC-----cCCCCCCCCceEEEE
Q 029376 27 CSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQK-----EAPPDMQCKDKFLLQ 91 (194)
Q Consensus 27 ~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~-----e~p~d~~~kDKFlVq 91 (194)
..+.++|.+..+.-|-+... . +|--....|.||.+..+.+++.++. ...+++ +.+|.|.
T Consensus 53 ~~f~V~N~~~~~~Efe~~~~---~-~vv~e~EnIaPG~s~~l~~~L~pGtY~~~C~~~~~~--~g~l~Vt 116 (375)
T PRK10378 53 TQFIIQNHSQKALEWEILKG---V-MVVEERENIAPGFSQKMTANLQPGEYDMTCGLLTNP--KGKLIVK 116 (375)
T ss_pred EEEEEEeCCCCcceEEeecc---c-cccccccccCCCCceEEEEecCCceEEeecCcCCCC--CceEEEe
Confidence 57777888777777765521 1 3434567899999999999987764 111222 5667775
No 70
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=21.31 E-value=2.3e+02 Score=24.39 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=27.7
Q ss_pred EEEEEcCCCCeEEEE-eeecCCCcEEEeCCceEeCCCCeEEEEE
Q 029376 28 SLQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGVVLPRSTCDVIV 70 (194)
Q Consensus 28 ~L~L~N~s~~~VAFK-VKTT~P~~Y~VrP~~GiI~P~~s~~I~V 70 (194)
.|++.|+|-.+|.|- ++- +.+. + ...+.|.|.++..+.+
T Consensus 170 ~l~v~NpTPYyvtl~~l~~-~~~~--~-~~~~miaPfs~~~~~~ 209 (237)
T PRK15224 170 KLKVENPTPFYMNLASVTV-GGKP--I-TGLEYIPPFADKTLNM 209 (237)
T ss_pred EEEEECCCCcEEEeEeEEE-CCcc--c-CCceeECCCCccEEEc
Confidence 499999999999975 333 3332 2 2247899999888764
No 71
>PRK02710 plastocyanin; Provisional
Probab=21.20 E-value=3.6e+02 Score=20.19 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=30.6
Q ss_pred ceEEeCCeeEEeccCCCeeEEEEEEEcCC--CCeEEEEeeecCCCcEEEeCCceEeCCCCeEEEEEEe
Q 029376 7 LLNIEPQELQFPFELRKQISCSLQLSNKT--DNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTM 72 (194)
Q Consensus 7 lL~I~P~eL~F~~~~~k~~~~~L~L~N~s--~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~Vtl 72 (194)
-+.++|.+|....- + .++++|.. .+.+.|. ....+. =..+.+.||++.++.++-
T Consensus 41 ~~~F~P~~i~v~~G--d----~V~~~N~~~~~H~v~~~----~~~~~~--~~~~~~~pg~t~~~tF~~ 96 (119)
T PRK02710 41 MLAFEPSTLTIKAG--D----TVKWVNNKLAPHNAVFD----GAKELS--HKDLAFAPGESWEETFSE 96 (119)
T ss_pred eeEEeCCEEEEcCC--C----EEEEEECCCCCceEEec----CCcccc--ccccccCCCCEEEEEecC
Confidence 46777777776642 1 36777764 3666653 111111 012457888888877764
No 72
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=20.92 E-value=1.2e+02 Score=22.98 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=20.1
Q ss_pred eEEEEEEEcCCCCeEEEEeeecCCCc
Q 029376 25 ISCSLQLSNKTDNYVAFKVKTTNPKK 50 (194)
Q Consensus 25 ~~~~L~L~N~s~~~VAFKVKTT~P~~ 50 (194)
..-+|++.+-...-+-||||.++|-+
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~Lk 44 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTPLK 44 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCChHH
Confidence 45678888866688899999988743
No 73
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=20.43 E-value=2.3e+02 Score=24.04 Aligned_cols=39 Identities=13% Similarity=0.365 Sum_probs=28.7
Q ss_pred EEEEEcCCCCeEEEE-eeecCCCcEEEeCCceEeCCCCeEEEEE
Q 029376 28 SLQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGVVLPRSTCDVIV 70 (194)
Q Consensus 28 ~L~L~N~s~~~VAFK-VKTT~P~~Y~VrP~~GiI~P~~s~~I~V 70 (194)
.|++.|+|..++.|- ++- +.+. +. ..|.|.|+++..+.+
T Consensus 159 ~l~v~Nptpy~vtl~~l~~-~g~~--~~-~~~mi~P~s~~~~~l 198 (228)
T PRK15208 159 QIKVENPSAFNLTFNQFYA-NGRD--IE-KAGMVPAKGSLNIEL 198 (228)
T ss_pred EEEEECCCccEEEEEEEEE-CCcc--cC-CCceECCCCccEEEc
Confidence 599999999999876 443 2222 22 368999999988875
No 74
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=20.19 E-value=64 Score=23.69 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=14.8
Q ss_pred EEEeeecCCC--cEEEeCCceEeC
Q 029376 40 AFKVKTTNPK--KYCVRPNTGVVL 61 (194)
Q Consensus 40 AFKVKTT~P~--~Y~VrP~~GiI~ 61 (194)
+||+|+.+.+ +|++.|+.|+-.
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~ 25 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEE 25 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHH
Confidence 6899977655 466667776543
Done!