Query 029376
Match_columns 194
No_of_seqs 215 out of 709
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 19:34:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wic_A Hypothetical protein ri 100.0 9.6E-40 3.3E-44 261.2 12.7 135 4-143 15-152 (152)
2 2cri_A Vesicle-associated memb 100.0 1.5E-36 5.1E-41 241.0 18.8 128 1-132 8-136 (147)
3 1z9l_A Vesicle-associated memb 100.0 5.7E-36 2E-40 232.0 17.0 123 1-127 4-127 (128)
4 1msp_A MSP, major sperm protei 100.0 5.6E-34 1.9E-38 221.2 17.7 119 5-127 6-125 (126)
5 1row_A SSP-19, MSP-domain prot 100.0 9.2E-29 3.2E-33 188.0 14.6 104 8-125 3-106 (109)
6 1m1s_A WR4; structural genomic 100.0 2.3E-28 8E-33 187.8 16.2 106 6-125 9-114 (116)
7 2ys4_A Hydrocephalus-inducing 98.4 1.4E-06 4.8E-11 65.6 8.6 75 12-92 29-104 (122)
8 2e6j_A Hydin protein; PAPD, st 98.1 1E-05 3.5E-10 59.2 8.3 71 5-75 7-81 (112)
9 3qbt_B Inositol polyphosphate 98.1 2.5E-05 8.5E-10 60.7 10.2 69 6-74 25-100 (140)
10 3qis_A Inositol polyphosphate 97.6 0.00034 1.2E-08 62.0 10.2 70 6-75 28-104 (366)
11 2qsv_A Uncharacterized protein 96.8 0.0059 2E-07 50.0 8.9 69 7-76 2-71 (220)
12 2qsv_A Uncharacterized protein 96.2 0.023 7.7E-07 46.5 9.1 67 6-75 118-186 (220)
13 3q48_A Chaperone CUPB2; IG fol 93.0 0.71 2.4E-05 38.9 10.0 108 7-128 29-146 (257)
14 2co7_B SAFB chaperone, putativ 93.0 1 3.5E-05 37.0 10.7 84 7-94 13-101 (221)
15 2xg5_A PAPD, chaperone protein 92.7 1.6 5.5E-05 35.7 11.5 107 8-128 2-117 (218)
16 1klf_A FIMC chaperone, chapero 91.9 2.3 7.7E-05 34.5 11.3 109 8-128 2-117 (205)
17 4djm_A DRAB; chaperone, PILI; 90.9 2 7E-05 35.7 10.4 71 7-81 23-98 (239)
18 1l4i_A SFAE protein; periplasm 90.7 3.2 0.00011 33.5 11.2 110 8-129 2-118 (206)
19 4ay0_A Chaperone protein CAF1M 89.7 7.3 0.00025 31.8 13.7 108 7-128 13-127 (218)
20 2r39_A FIXG-related protein; s 89.4 2.3 7.9E-05 31.1 8.5 52 25-76 33-85 (118)
21 3gfu_C Chaperone protein FAEE; 86.8 6.7 0.00023 32.3 10.6 105 8-128 2-113 (224)
22 1yew_A Particulate methane mon 86.8 4.2 0.00014 36.3 9.7 66 8-75 250-337 (382)
23 3rfr_A PMOB; membrane, oxidore 85.1 3.4 0.00012 37.2 8.4 65 8-75 284-369 (419)
24 3zy7_A AP-1 complex subunit ga 55.0 34 0.0012 25.1 6.4 67 24-94 30-102 (122)
25 2huh_A Putative DNA mismatch r 50.6 40 0.0014 26.2 6.2 65 26-98 29-94 (147)
26 3idu_A Uncharacterized protein 48.3 59 0.002 24.2 6.8 68 22-98 32-100 (127)
27 2xzz_A Protein-glutamine gamma 44.6 83 0.0028 22.4 7.6 62 14-76 9-75 (102)
28 3vta_A Cucumisin; subtilisin-l 40.2 1.2E+02 0.0043 27.9 9.0 50 25-74 539-591 (621)
29 3hn9_A Lamin-B1; structural ge 39.9 45 0.0015 24.7 4.9 41 27-68 25-71 (123)
30 3e38_A Two-domain protein cont 30.6 1.6E+02 0.0055 25.3 7.6 65 27-98 270-334 (343)
31 2iaa_C Azurin; quinoprotein, t 29.7 69 0.0024 23.6 4.5 64 6-72 10-98 (128)
32 1wm3_A Ubiquitin-like protein 29.0 50 0.0017 21.5 3.2 21 28-48 3-23 (72)
33 3jt0_A Lamin-B1; structural ge 28.3 87 0.003 23.9 4.9 42 27-68 38-84 (144)
34 1ifr_A Lamin A/C; immunoglobul 27.7 1.3E+02 0.0044 22.1 5.6 42 27-68 19-66 (121)
35 2ccw_A Azurin II, AZN-2; elect 26.7 66 0.0023 23.7 3.9 64 7-73 12-100 (129)
36 1klf_A FIMC chaperone, chapero 25.9 1E+02 0.0036 24.4 5.2 39 28-70 139-177 (205)
37 4ay0_A Chaperone protein CAF1M 24.8 76 0.0026 25.6 4.2 39 28-70 149-187 (218)
38 2io0_B Small ubiquitin-related 24.6 68 0.0023 22.2 3.4 23 26-48 5-27 (91)
39 4hci_A Cupredoxin 1; structura 24.4 1.7E+02 0.0057 19.7 6.1 52 9-72 24-75 (100)
40 1gyu_A Adapter-related protein 24.4 2.2E+02 0.0076 21.2 6.9 67 24-94 48-120 (140)
41 1yyc_A LEA protein, putative l 24.4 2.5E+02 0.0086 21.8 7.5 51 24-74 63-119 (174)
42 1bxv_A Plastocyanin; copper pr 24.1 1.1E+02 0.0039 19.8 4.4 55 6-70 12-66 (91)
43 4gio_A Putative lipoprotein; u 24.0 1.4E+02 0.0047 21.5 5.1 48 22-69 35-88 (107)
44 3i6s_A Subtilisin-like proteas 23.8 3.1E+02 0.011 25.6 8.7 51 25-75 560-613 (649)
45 1b3i_A PETE protein, protein ( 23.2 1.2E+02 0.0041 20.1 4.5 59 6-70 12-72 (97)
46 3o0l_A Uncharacterized protein 21.7 1.7E+02 0.0058 21.1 5.2 48 22-69 37-91 (112)
47 2lll_A Lamin-B2; immunoglobuli 21.6 1.5E+02 0.0053 22.3 5.2 42 27-68 34-81 (139)
48 2plt_A Plastocyanin; electron 21.1 1.9E+02 0.0064 19.1 5.3 61 5-71 10-74 (98)
49 1byp_A Protein (plastocyanin); 20.8 1.1E+02 0.0038 20.4 3.9 61 5-71 9-75 (99)
50 1qhq_A Protein (auracyanin); e 20.5 70 0.0024 23.2 2.9 62 8-73 28-113 (140)
51 1kdj_A Plastocyanin; electron 20.3 66 0.0022 21.7 2.6 56 5-70 9-77 (102)
52 2io1_B Small ubiquitin-related 20.2 93 0.0032 21.6 3.4 23 26-48 7-29 (94)
53 3q48_A Chaperone CUPB2; IG fol 20.0 72 0.0024 26.5 3.2 43 26-70 172-216 (257)
No 1
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=100.00 E-value=9.6e-40 Score=261.22 Aligned_cols=135 Identities=30% Similarity=0.492 Sum_probs=124.9
Q ss_pred CCcceEEeCC-eeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCceEeCCCCeEEEEEEeccCCcCCCCC
Q 029376 4 TGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDM 82 (194)
Q Consensus 4 ~~~lL~I~P~-eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~p~d~ 82 (194)
++.+|.|+|. +|.|.++++++++|.|+|+|+++++||||||||+|++|+|||+.|+|.||++++|.|+||++.+ .
T Consensus 15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq~~~~----~ 90 (152)
T 1wic_A 15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLT----V 90 (152)
T ss_dssp CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSC----C
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEecCccc----C
Confidence 4689999998 9999999999999999999999999999999999999999999999999999999999999854 2
Q ss_pred CCCceEEEEEEEeC--CCCCccCcchhhhcccCCCeeeEEEeEEEEeCCCCCCCCCCCCCcCC
Q 029376 83 QCKDKFLLQGVVAS--PGATAKDITPEMFNKEAGHHVEECKLRVLYVAPPRPPSPVHEGSEEG 143 (194)
Q Consensus 83 ~~kDKFlVqs~~v~--~~~~~~di~~~~F~k~~~~~v~e~KLrv~~~~p~~pps~v~~~~e~~ 143 (194)
.|+|||+||++.++ ++++.+|+. ++|++..+..++++||||+|+.+++|+|++.+|.++|
T Consensus 91 ~~kDKFlVqs~~v~~~~~~~~~d~~-~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~g~~~~ 152 (152)
T 1wic_A 91 SAQDRFLIMAAEMEQSSGTGPAELS-QFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSGPSSG 152 (152)
T ss_dssp CSSCCEEEEEEECCSSCCCSHHHHH-HHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCCCSCC
T ss_pred CCCCEEEEEEEEcCCcCCCChhhHH-HHHhccCCCceEEEEEEEEECCCCCCCCccccCCCCC
Confidence 78999999999998 566667885 8998888888999999999999999999999998876
No 2
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=100.00 E-value=1.5e-36 Score=240.99 Aligned_cols=128 Identities=32% Similarity=0.612 Sum_probs=115.1
Q ss_pred CCCCCcceEEeCC-eeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCceEeCCCCeEEEEEEeccCCcCC
Q 029376 1 MMSTGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP 79 (194)
Q Consensus 1 m~~~~~lL~I~P~-eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~p 79 (194)
|...+.+|.|+|. +|.|.++++++++|.|+|+|+++++||||||||+|++|+|||+.|+|.||++++|.|+||++.. +
T Consensus 8 m~~~~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~~~~~-~ 86 (147)
T 2cri_A 8 MAKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQPFDY-D 86 (147)
T ss_dssp CCCCCCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEECCCCC-C
T ss_pred cCCCCCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEECCCcC-C
Confidence 4455689999997 9999999999999999999999999999999999999999999999999999999999999854 4
Q ss_pred CCCCCCceEEEEEEEeCCCCCccCcchhhhcccCCCeeeEEEeEEEEeCCCCC
Q 029376 80 PDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAPPRP 132 (194)
Q Consensus 80 ~d~~~kDKFlVqs~~v~~~~~~~di~~~~F~k~~~~~v~e~KLrv~~~~p~~p 132 (194)
++++|+|||+||++.++++. .|+ .++|++..+..++++||||+|+.|++.
T Consensus 87 p~~~~kDKFlVqs~~~~~~~--~d~-~~~wk~~~~~~i~e~kLrv~f~~p~~~ 136 (147)
T 2cri_A 87 PNEKSKHKFMVQTIFAPPNI--SDM-EAVWKEAKPDELMDSKLRCVFEMPNEN 136 (147)
T ss_dssp TTCCSCCCEEEEEEECCTTC--CCH-HHHHHHSCTTTCEEEEEEEEEECSCCS
T ss_pred ccccCCCEEEEEEEEcCCCc--ccH-HHHhhcCCCCceEEEEEEEEEecCCCC
Confidence 45789999999999999865 356 589988888889999999999987754
No 3
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=100.00 E-value=5.7e-36 Score=232.02 Aligned_cols=123 Identities=33% Similarity=0.622 Sum_probs=112.1
Q ss_pred CCCCCcceEEeCC-eeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCceEeCCCCeEEEEEEeccCCcCC
Q 029376 1 MMSTGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP 79 (194)
Q Consensus 1 m~~~~~lL~I~P~-eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~p 79 (194)
|...+.+|.|+|. +|.|.+++++++++.|+|+|+++++||||||||+|++|+|||+.|+|.||++++|.|+||++.. +
T Consensus 4 m~~~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~~~~~-~ 82 (128)
T 1z9l_A 4 MAKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFDY-D 82 (128)
T ss_dssp CCSCCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEECCCCC-C
T ss_pred CCCCCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEECcCcC-C
Confidence 5566789999997 9999999999999999999999999999999999999999999999999999999999999854 4
Q ss_pred CCCCCCceEEEEEEEeCCCCCccCcchhhhcccCCCeeeEEEeEEEEe
Q 029376 80 PDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYV 127 (194)
Q Consensus 80 ~d~~~kDKFlVqs~~v~~~~~~~di~~~~F~k~~~~~v~e~KLrv~~~ 127 (194)
++++|+|||+||++.++++. .|+ .++|++..+..++++||||+|.
T Consensus 83 p~~~~~dkF~V~s~~~~~~~--~~~-~~~w~~~~~~~i~e~kLrv~f~ 127 (128)
T 1z9l_A 83 PNEKSKHKFMVQTIFAPPNI--SDM-EAVWKEAKPDELMDSKLRCVFE 127 (128)
T ss_dssp TTCCCCCEEEEEEEECCTTC--SCH-HHHHHSCCGGGCEEEEEEEEEE
T ss_pred cccccCCEEEEEEEECCCCc--chH-HHHhhcCCCCceEEEEEEEEEe
Confidence 45689999999999999865 366 5899888888999999999995
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=100.00 E-value=5.6e-34 Score=221.16 Aligned_cols=119 Identities=21% Similarity=0.357 Sum_probs=108.6
Q ss_pred CcceEEeCC-eeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCceEeCCCCeEEEEEEeccCCcCCCCCC
Q 029376 5 GELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQ 83 (194)
Q Consensus 5 ~~lL~I~P~-eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~p~d~~ 83 (194)
...|.|+|. +|.|+++++++++|.|+|+|+|+++||||||||+|++|||||++|+|+||+++.|.|+||++.+.|++.
T Consensus 6 ~~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~q~~~~~~~~~- 84 (126)
T 1msp_A 6 PGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATEDL- 84 (126)
T ss_dssp CCCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEECCCCGGGSCC-
T ss_pred CCeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEecCCCCCCCcc-
Confidence 468999998 999999999999999999999999999999999999999999999999999999999999998777664
Q ss_pred CCceEEEEEEEeCCCCCccCcchhhhcccCCCeeeEEEeEEEEe
Q 029376 84 CKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYV 127 (194)
Q Consensus 84 ~kDKFlVqs~~v~~~~~~~di~~~~F~k~~~~~v~e~KLrv~~~ 127 (194)
.+|||+|||+.++++.+ +|+..+||.++ ..+..++|+|.|.
T Consensus 85 ~kDKf~Vq~~~~p~~~~-~~~~~~wf~~d--~~~~~k~L~V~Yn 125 (126)
T 1msp_A 85 NNDRITIEWTNTPDGAA-KQFRREWFQGD--GMVRRKNLPIEYN 125 (126)
T ss_dssp SSCEEEEEEEECCTTCC-SSCCTHHHHSS--SCCEEEEEEEEEE
T ss_pred CCCEEEEEEEECCCCcc-hhhhHHhhcCC--CceEEEEEEEEec
Confidence 49999999999998874 68988888654 3589999999996
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.96 E-value=9.2e-29 Score=187.98 Aligned_cols=104 Identities=24% Similarity=0.352 Sum_probs=89.9
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCceEeCCCCeEEEEEEeccCCcCCCCCCCCce
Q 029376 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDK 87 (194)
Q Consensus 8 L~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~p~d~~~kDK 87 (194)
|.|+|.+|.|.++. .+|.|+|+|.++++||||||||+|++|||||++|+|+||++++|.|+||++ + .++||
T Consensus 3 L~i~P~~l~F~~~~---~~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~q~~---~---~~~dK 73 (109)
T 1row_A 3 LTADPPACTVPAAG---VSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAG---A---PKEDK 73 (109)
T ss_dssp CEEESSSEEEETTC---EEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEECSC---C---CEEEE
T ss_pred EEEECCEeEEeCCC---CeEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCCCE
Confidence 89999999999873 479999999999999999999999999999999999999999999999985 2 47999
Q ss_pred EEEEEEEeCCCCCccCcchhhhcccCCCeeeEEEeEEE
Q 029376 88 FLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVL 125 (194)
Q Consensus 88 FlVqs~~v~~~~~~~di~~~~F~k~~~~~v~e~KLrv~ 125 (194)
|+||++.++++. .|. .++|++... ..+.+|++.
T Consensus 74 flvq~~~~~~~~--~d~-~~~fk~~~~--~g~~~i~l~ 106 (109)
T 1row_A 74 LVVHFASAPADA--TDA-QAAFVAVAP--AGTVTIPMS 106 (109)
T ss_dssp EEEEEEECCTTC--SCH-HHHHTTCCC--CEEEEEEEE
T ss_pred EEEEEEECCCCC--CCH-HHHhhcCCC--CceEEEEEE
Confidence 999999998763 355 588887543 456666654
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.96 E-value=2.3e-28 Score=187.78 Aligned_cols=106 Identities=23% Similarity=0.377 Sum_probs=92.9
Q ss_pred cceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCceEeCCCCeEEEEEEeccCCcCCCCCCCC
Q 029376 6 ELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCK 85 (194)
Q Consensus 6 ~lL~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~p~d~~~k 85 (194)
.++.++|.+|.|+++ +.+|.|+|+|+++++||||||||+|++|||||++|+|+||++++|.|++|++ + .++
T Consensus 9 ~~~~~~p~~l~F~~~---gg~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~q~~---~---~k~ 79 (116)
T 1m1s_A 9 SMINVDPPTGNYPAT---GGNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRLPG---P---PKE 79 (116)
T ss_dssp CSEEEESSEEEECTT---CEEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEECSC---C---SCE
T ss_pred eeeecCCCeEEEecC---CCEEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCC
Confidence 679999999999986 3599999999999999999999999999999999999999999999999997 2 479
Q ss_pred ceEEEEEEEeCCCCCccCcchhhhcccCCCeeeEEEeEEE
Q 029376 86 DKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVL 125 (194)
Q Consensus 86 DKFlVqs~~v~~~~~~~di~~~~F~k~~~~~v~e~KLrv~ 125 (194)
|||+||++.++++. .|. .++|++..+ .++.+|++.
T Consensus 80 DKflVq~~~~~~d~--~d~-~~~fk~~~~--~g~~~i~l~ 114 (116)
T 1m1s_A 80 DKIVIQYAEVPAEE--TDP-MAPFKAGAQ--QGEIIVKLI 114 (116)
T ss_dssp EEEEEEEEEECTTC--CCT-THHHHTTCC--CEEEEEEEE
T ss_pred CEEEEEEEECCCCC--CCH-HHHHhcCCC--CceEEEEEE
Confidence 99999999998653 355 488887644 678888764
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.38 E-value=1.4e-06 Score=65.62 Aligned_cols=75 Identities=16% Similarity=0.317 Sum_probs=60.4
Q ss_pred CCeeEEec-cCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCceEeCCCCeEEEEEEeccCCcCCCCCCCCceEEE
Q 029376 12 PQELQFPF-ELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLL 90 (194)
Q Consensus 12 P~eL~F~~-~~~k~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~p~d~~~kDKFlV 90 (194)
|..|.|.. +.+......|.|+|.++.++.|++++. .-|.|.|+.|.|.||+++.|.|+..|...- .....+.|
T Consensus 29 p~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F~P~~~g----~~~~~l~v 102 (122)
T 2ys4_A 29 PDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEFEPQSVG----DHSGRLIV 102 (122)
T ss_dssp CSEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEECCSSSB----CCCCBCEE
T ss_pred CCeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEEEcCCCc----cEEEEEEE
Confidence 66788875 456678899999999999999999974 479999999999999999999999987421 23455554
Q ss_pred EE
Q 029376 91 QG 92 (194)
Q Consensus 91 qs 92 (194)
..
T Consensus 103 ~~ 104 (122)
T 2ys4_A 103 CY 104 (122)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 8
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.13 E-value=1e-05 Score=59.24 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=60.3
Q ss_pred CcceEEeCCeeEEec-cCCCeeEEEEEEEcCCCCeEEEEeeecCC---CcEEEeCCceEeCCCCeEEEEEEeccC
Q 029376 5 GELLNIEPQELQFPF-ELRKQISCSLQLSNKTDNYVAFKVKTTNP---KKYCVRPNTGVVLPRSTCDVIVTMQSQ 75 (194)
Q Consensus 5 ~~lL~I~P~eL~F~~-~~~k~~~~~L~L~N~s~~~VAFKVKTT~P---~~Y~VrP~~GiI~P~~s~~I~Vtlq~~ 75 (194)
+..+.+++..|.|-. ..+...++.++|+|+++-++.|++..... ..|.+.|..|.|.||++..|.|++.+.
T Consensus 7 ~P~i~~~~~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~~ 81 (112)
T 2e6j_A 7 GPKIHFNFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSI 81 (112)
T ss_dssp CCSEEESCSEEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECCC
T ss_pred CCEEEECcccEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEECC
Confidence 466889998898864 45677889999999999999999964221 469999999999999999999999885
No 9
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=98.09 E-value=2.5e-05 Score=60.72 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=59.6
Q ss_pred cceEEeCCeeEEec-cCCCeeEEEEEEEcCCCCeEEEEeeec------CCCcEEEeCCceEeCCCCeEEEEEEecc
Q 029376 6 ELLNIEPQELQFPF-ELRKQISCSLQLSNKTDNYVAFKVKTT------NPKKYCVRPNTGVVLPRSTCDVIVTMQS 74 (194)
Q Consensus 6 ~lL~I~P~eL~F~~-~~~k~~~~~L~L~N~s~~~VAFKVKTT------~P~~Y~VrP~~GiI~P~~s~~I~Vtlq~ 74 (194)
.-+.+++.+|.|-. .+....++.|+|+|++.-++-|++.-. .+.-+.|.|..|.|.||+++.|.|++.-
T Consensus 25 P~i~v~~~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 25 PSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 100 (140)
T ss_dssp CCEEESCCEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred CceEeeeeeEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence 56788889999974 567788999999999999999999853 3446889999999999999999999874
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=97.59 E-value=0.00034 Score=62.01 Aligned_cols=70 Identities=19% Similarity=0.238 Sum_probs=59.4
Q ss_pred cceEEeCCeeEEe-ccCCCeeEEEEEEEcCCCCeEEEEeeecCC------CcEEEeCCceEeCCCCeEEEEEEeccC
Q 029376 6 ELLNIEPQELQFP-FELRKQISCSLQLSNKTDNYVAFKVKTTNP------KKYCVRPNTGVVLPRSTCDVIVTMQSQ 75 (194)
Q Consensus 6 ~lL~I~P~eL~F~-~~~~k~~~~~L~L~N~s~~~VAFKVKTT~P------~~Y~VrP~~GiI~P~~s~~I~Vtlq~~ 75 (194)
.-+.|++.+|.|- -.+....+.+|+|+|++.-++.|++..... .-+.|.|..|.|.||+++.|.|++.-.
T Consensus 28 P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~ 104 (366)
T 3qis_A 28 PSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVS 104 (366)
T ss_dssp CCEEESCSEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBC
T ss_pred CeEEEecCeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEEC
Confidence 5688899999996 367788999999999999999999986422 226799999999999999999998754
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.79 E-value=0.0059 Score=50.02 Aligned_cols=69 Identities=13% Similarity=0.190 Sum_probs=58.9
Q ss_pred ceEEeCCeeEEec-cCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCceEeCCCCeEEEEEEeccCC
Q 029376 7 LLNIEPQELQFPF-ELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQK 76 (194)
Q Consensus 7 lL~I~P~eL~F~~-~~~k~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~ 76 (194)
-|+++|..+.|.- +-+......++++|.++.++-++.-.. |....+++..+.|.||++..|.|++.+..
T Consensus 2 ~i~~~~~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~~~~~ 71 (220)
T 2qsv_A 2 PLQVSNARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSLAVPR 71 (220)
T ss_dssp CEEESCSEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEECCCT
T ss_pred ceEEecCeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEEcchh
Confidence 3899999999984 345566789999999999999997644 88888899999999999999999998754
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.25 E-value=0.023 Score=46.50 Aligned_cols=67 Identities=12% Similarity=0.254 Sum_probs=57.3
Q ss_pred cceEEeCCeeEEe-ccCCCeeEEEEEEEcCCCCeEEE-EeeecCCCcEEEeCCceEeCCCCeEEEEEEeccC
Q 029376 6 ELLNIEPQELQFP-FELRKQISCSLQLSNKTDNYVAF-KVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQ 75 (194)
Q Consensus 6 ~lL~I~P~eL~F~-~~~~k~~~~~L~L~N~s~~~VAF-KVKTT~P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~ 75 (194)
..+.++ ..+.|- .+ +....+.++|+|.++.++.+ +|+|++ +...+.+..+.|.||++..|.|++.+.
T Consensus 118 ~~i~~~-~~~dfG~i~-g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~~~~ 186 (220)
T 2qsv_A 118 GVMELS-TYLDMGQLD-GETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAVDPQ 186 (220)
T ss_dssp CCEECC-CEEEEEECT-TSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEECHH
T ss_pred CEEEEE-eEEeeeccC-CCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEEecC
Confidence 347777 778886 34 67788999999999999998 788765 689999999999999999999999875
No 13
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=93.02 E-value=0.71 Score=38.94 Aligned_cols=108 Identities=17% Similarity=0.236 Sum_probs=68.4
Q ss_pred ceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecCC----------CcEEEeCCceEeCCCCeEEEEEEeccCC
Q 029376 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNP----------KKYCVRPNTGVVLPRSTCDVIVTMQSQK 76 (194)
Q Consensus 7 lL~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~P----------~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~ 76 (194)
-|.|.|..+.|+.. +...+|+|+|.++.++.-.+...+. .-|.|.|+.--|+||+...|.|.....
T Consensus 29 ~v~i~~TRvIy~~~---~k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~~~- 104 (257)
T 3q48_A 29 GLIAQGTRVVFPAS---EREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYLKA- 104 (257)
T ss_dssp --CCSCSEEEEETT---CSEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEECCC-
T ss_pred eEEEcceEEEEeCC---CcEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEECCC-
Confidence 36677888999864 3368999999999887766554321 249999999999999999999987654
Q ss_pred cCCCCCCCCceEEEEEEEeCCCCCccCcchhhhcccCCCeeeEEEeEEEEeC
Q 029376 77 EAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVA 128 (194)
Q Consensus 77 e~p~d~~~kDKFlVqs~~v~~~~~~~di~~~~F~k~~~~~v~e~KLrv~~~~ 128 (194)
.+|.|... -|-+....+|+... + ....=......+|++-|.+
T Consensus 105 ~LP~DrES--lf~lnv~eIPp~~~--~------~~n~Lqiair~rIKLFyRP 146 (257)
T 3q48_A 105 PLPTDRES--LFWLNILEVPPRDE--D------ENNALQFSFRSRFKLFFRP 146 (257)
T ss_dssp CCCSSSCE--EEEEEEEEECCC-----------------CCEEEEEEEEEEC
T ss_pred CCCCCcee--EEEEEeeecCCCCC--C------CCceEEEEEEEEEEEEEec
Confidence 35665332 24443344443211 1 0011123456888888883
No 14
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=93.00 E-value=1 Score=37.01 Aligned_cols=84 Identities=11% Similarity=0.170 Sum_probs=60.0
Q ss_pred ceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecC-----CCcEEEeCCceEeCCCCeEEEEEEeccCCcCCCC
Q 029376 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN-----PKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPD 81 (194)
Q Consensus 7 lL~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~-----P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~p~d 81 (194)
-|.|.+..+.|+.. ....+|+|+|.++.++.-.+...+ ..-|.|-|+.--|+||+...|.|..... .+|.|
T Consensus 13 ~v~i~~TRvIy~~~---~k~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~lP~D 88 (221)
T 2co7_B 13 SVKLGATRVIYHAG---TAGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPTD 88 (221)
T ss_dssp ECEESCSEEEEETT---SSCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEECCC-CCCSS
T ss_pred EEEEcceEEEEcCC---CCEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEECCC-CCCCC
Confidence 36788889999964 346799999999987766654422 2359999999999999999999988763 46665
Q ss_pred CCCCceEEEEEEE
Q 029376 82 MQCKDKFLLQGVV 94 (194)
Q Consensus 82 ~~~kDKFlVqs~~ 94 (194)
...--.|.|+.++
T Consensus 89 rEslf~lnv~eIP 101 (221)
T 2co7_B 89 RETLQWVCIKAVP 101 (221)
T ss_dssp SCEEEEEEEEEEC
T ss_pred ceEEEEEEeecCC
Confidence 3323333333333
No 15
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=92.72 E-value=1.6 Score=35.73 Aligned_cols=107 Identities=15% Similarity=0.190 Sum_probs=70.5
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCC-eEEEEeeecC-------CCcEEEeCCceEeCCCCeEEEEEEeccC-CcC
Q 029376 8 LNIEPQELQFPFELRKQISCSLQLSNKTDN-YVAFKVKTTN-------PKKYCVRPNTGVVLPRSTCDVIVTMQSQ-KEA 78 (194)
Q Consensus 8 L~I~P~eL~F~~~~~k~~~~~L~L~N~s~~-~VAFKVKTT~-------P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~-~e~ 78 (194)
|.|.+..+.|+.. ....+|+|+|.++. ++.-.+...+ ..-|.|-|+.--|+||+...|.|..... ..+
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~~~l 78 (218)
T 2xg5_A 2 VSLDRTRAVFDGS---EKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKL 78 (218)
T ss_dssp EEESCSEEEEETT---SSEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEECGGGGGS
T ss_pred cEeCceEEEEeCC---CCEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEecCCCCCC
Confidence 5677888999875 34789999999988 7766655432 2349999999999999999999988762 246
Q ss_pred CCCCCCCceEEEEEEEeCCCCCccCcchhhhcccCCCeeeEEEeEEEEeC
Q 029376 79 PPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVA 128 (194)
Q Consensus 79 p~d~~~kDKFlVqs~~v~~~~~~~di~~~~F~k~~~~~v~e~KLrv~~~~ 128 (194)
|.|...--.|.|+. +|+.. ++ +..=......+|++-|.+
T Consensus 79 P~DrESlf~lnv~e--IPp~~--~~-------~n~lqia~r~rIKlFyRP 117 (218)
T 2xg5_A 79 PQDRESLFYFNLRE--IPPRS--EK-------ANVLQIALQTKIKLFYRP 117 (218)
T ss_dssp CSSSCEEEEEEEEE--ECCCC--CC-------TTEEEEEEEEEEEEEEEC
T ss_pred CCCceEEEEEEeec--CCCCC--CC-------CceEEEEehheeeEEEcC
Confidence 76633333333343 34321 01 000123456788888873
No 16
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=91.86 E-value=2.3 Score=34.50 Aligned_cols=109 Identities=11% Similarity=0.172 Sum_probs=69.9
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCC-eEEEEeeec-----CCCcEEEeCCceEeCCCCeEEEEEEe-ccCCcCCC
Q 029376 8 LNIEPQELQFPFELRKQISCSLQLSNKTDN-YVAFKVKTT-----NPKKYCVRPNTGVVLPRSTCDVIVTM-QSQKEAPP 80 (194)
Q Consensus 8 L~I~P~eL~F~~~~~k~~~~~L~L~N~s~~-~VAFKVKTT-----~P~~Y~VrP~~GiI~P~~s~~I~Vtl-q~~~e~p~ 80 (194)
+.|.+..+.|+.. ....+|+|+|.++. ++.-.+... ...-|.|-|+.--|+||+...|.|.. .. ..+|.
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~lP~ 77 (205)
T 1klf_A 2 VALGATRVIYPAG---QKQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATN-NQLPQ 77 (205)
T ss_dssp EEESCSEEEEETT---CSEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEECSC-SCSCS
T ss_pred eEecceEEEEeCC---CcEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CCCCC
Confidence 5677888999875 34789999999987 766665442 12359999999999999999999988 65 34676
Q ss_pred CCCCCceEEEEEEEeCCCCCccCcchhhhcccCCCeeeEEEeEEEEeC
Q 029376 81 DMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVA 128 (194)
Q Consensus 81 d~~~kDKFlVqs~~v~~~~~~~di~~~~F~k~~~~~v~e~KLrv~~~~ 128 (194)
|... -|-+-...+|+.....+ .+..=......+|++-|.+
T Consensus 78 DrEs--lf~lnv~eIPp~~~~~~------~~n~lqia~r~riKlFyRP 117 (205)
T 1klf_A 78 DRES--LFWMNVKAIPSMDKSKL------TENTLQLAIISRIKLYYRP 117 (205)
T ss_dssp SSCE--EEEEEEEEECCCCTTST------TSCEEEEEEEEEEEEEEEC
T ss_pred CceE--EEEEEeEecCCCCcccc------CCceEEEEeeeeeeEEEcc
Confidence 5332 33333333443211000 0000123446788888884
No 17
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=90.95 E-value=2 Score=35.73 Aligned_cols=71 Identities=15% Similarity=0.226 Sum_probs=53.7
Q ss_pred ceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeec-----CCCcEEEeCCceEeCCCCeEEEEEEeccCCcCCCC
Q 029376 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTT-----NPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPD 81 (194)
Q Consensus 7 lL~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT-----~P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~p~d 81 (194)
-|.|.+..+.|+.. +...+|+|+|.++.++.-.+... ...-|.|.|+.--|+||+...|.|..... .+|.|
T Consensus 23 ~v~l~~TRvIy~~~---~k~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~D 98 (239)
T 4djm_A 23 SLHLGATRVVYNPA---SSGETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVRTGG-EFPPD 98 (239)
T ss_dssp CCEESCSEEEECTT---SSCEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEECSC-CCCSS
T ss_pred eEEEcceEEEEeCC---CCEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 36788889999864 33679999999988765544421 12349999999999999999999987654 35665
No 18
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=90.73 E-value=3.2 Score=33.54 Aligned_cols=110 Identities=12% Similarity=0.170 Sum_probs=71.5
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCC-CeEEEEeeecC-----CCcEEEeCCceEeCCCCeEEEEEE-eccCCcCCC
Q 029376 8 LNIEPQELQFPFELRKQISCSLQLSNKTD-NYVAFKVKTTN-----PKKYCVRPNTGVVLPRSTCDVIVT-MQSQKEAPP 80 (194)
Q Consensus 8 L~I~P~eL~F~~~~~k~~~~~L~L~N~s~-~~VAFKVKTT~-----P~~Y~VrP~~GiI~P~~s~~I~Vt-lq~~~e~p~ 80 (194)
|.|.+..+.|+.. ....+|+|+|.++ .++.-.+...+ ..-|.|-|+.--|+||+...|.|. ... ..+|.
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~lP~ 77 (206)
T 1l4i_A 2 VALGATRVIYPEG---QKQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDATN-GQMPE 77 (206)
T ss_dssp EEESCSEEEEETT---CSEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEECCT-TCSCS
T ss_pred eEeCceEEEEeCC---CcEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CCCCC
Confidence 5677888999874 3478999999986 77666654421 235999999999999999999998 654 34676
Q ss_pred CCCCCceEEEEEEEeCCCCCccCcchhhhcccCCCeeeEEEeEEEEeCC
Q 029376 81 DMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAP 129 (194)
Q Consensus 81 d~~~kDKFlVqs~~v~~~~~~~di~~~~F~k~~~~~v~e~KLrv~~~~p 129 (194)
|...--.|.|+.++..+... ++ +..=......+|++-|.+.
T Consensus 78 DrEslf~lnv~eIPp~~~~~-~~-------~n~lqia~r~riKlFyRP~ 118 (206)
T 1l4i_A 78 DRESLFWVNVKAIPAMDKAK-TG-------ENYLQFAIVSRIKLLYRPQ 118 (206)
T ss_dssp SSCEEEEEEEEEEECCC----------------CCCEEEEEEEEEEECT
T ss_pred CceEEEEEEeecCCCCcccc-cC-------CceEEEEhhheeeEEEecc
Confidence 64444445555555322110 00 0111234678899888843
No 19
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=89.72 E-value=7.3 Score=31.81 Aligned_cols=108 Identities=13% Similarity=0.150 Sum_probs=66.2
Q ss_pred ceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeec-------CCCcEEEeCCceEeCCCCeEEEEEEeccCCcCC
Q 029376 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTT-------NPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP 79 (194)
Q Consensus 7 lL~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT-------~P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~p 79 (194)
-+.|.-..+.|+.. ....+|+|+|.++.++.-..... ...-|.|.|+.--|+||+...|.|..... .+|
T Consensus 13 gv~l~~TRvIy~~~---~k~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~~~~-~LP 88 (218)
T 4ay0_A 13 GVTIGESRIIYPLD---AAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGG-VFP 88 (218)
T ss_dssp CEEESCCEEEEETT---CSCEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEECSC-CCC
T ss_pred eEEECceEEEECCC---CcEEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEecCC-CCC
Confidence 46677778899864 33678999999998866554431 11249999999999999999999988754 366
Q ss_pred CCCCCCceEEEEEEEeCCCCCccCcchhhhcccCCCeeeEEEeEEEEeC
Q 029376 80 PDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVA 128 (194)
Q Consensus 80 ~d~~~kDKFlVqs~~v~~~~~~~di~~~~F~k~~~~~v~e~KLrv~~~~ 128 (194)
.|.. --|-+-...+|+... +- .. .=......+|++-|.+
T Consensus 89 ~DRE--Slf~lnv~eIPp~~~--~~----~n--~lqia~r~rIKlFyRP 127 (218)
T 4ay0_A 89 RDKE--SLKWLCVKGIPPKDE--DI----WV--DVQFAINNCIKLLVRP 127 (218)
T ss_dssp SSSC--EEEEEEEEEECC----------------------CEEEEEEEC
T ss_pred cCcE--EEEEEEEEecCCCCc--cc----cc--eeEEEEEEEEEEEEcC
Confidence 6522 224444444443211 10 00 0122345678888873
No 20
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=89.35 E-value=2.3 Score=31.10 Aligned_cols=52 Identities=13% Similarity=0.170 Sum_probs=40.5
Q ss_pred eEEEEEEEcCCCCeEEEEeeecCCCcEEEe-CCceEeCCCCeEEEEEEeccCC
Q 029376 25 ISCSLQLSNKTDNYVAFKVKTTNPKKYCVR-PNTGVVLPRSTCDVIVTMQSQK 76 (194)
Q Consensus 25 ~~~~L~L~N~s~~~VAFKVKTT~P~~Y~Vr-P~~GiI~P~~s~~I~Vtlq~~~ 76 (194)
-...|+|.|++.++..|.++-.....+.+. |..=.|.||+...+.|.+....
T Consensus 33 N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v~~~~ 85 (118)
T 2r39_A 33 NTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLGADP 85 (118)
T ss_dssp EEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEEEECG
T ss_pred EEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEEEECh
Confidence 469999999999999999998765446654 5545788999888888876543
No 21
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=86.78 E-value=6.7 Score=32.33 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=65.0
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCC-eEEEEeeec--C----CCcEEEeCCceEeCCCCeEEEEEEeccCCcCCC
Q 029376 8 LNIEPQELQFPFELRKQISCSLQLSNKTDN-YVAFKVKTT--N----PKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPP 80 (194)
Q Consensus 8 L~I~P~eL~F~~~~~k~~~~~L~L~N~s~~-~VAFKVKTT--~----P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~p~ 80 (194)
|.++...+.|+.. +...+|+|+|.++. ++.-.+... . ..-|.|.|+.--|+||+...|.|..... .+|.
T Consensus 2 ~~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~ 77 (224)
T 3gfu_C 2 LAVDQTRYIFRGD---KDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASD-HLPK 77 (224)
T ss_dssp EECSCSEEEEETT---SSCEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred ccccceEEEEeCC---CceEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 4566678888864 33679999999875 443333221 1 2249999999999999999999987653 3565
Q ss_pred CCCCCceEEEEEEEeCCCCCccCcchhhhcccCCCeeeEEEeEEEEeC
Q 029376 81 DMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVA 128 (194)
Q Consensus 81 d~~~kDKFlVqs~~v~~~~~~~di~~~~F~k~~~~~v~e~KLrv~~~~ 128 (194)
|...--.|.|.. +|+... ...=......+|++-|.+
T Consensus 78 DRESlf~lnv~e--IPp~~~----------~n~Lqiair~rIKLFyRP 113 (224)
T 3gfu_C 78 DKESVYWLNLQD--IPPALE----------GSGIAVALRTKLKLFYRP 113 (224)
T ss_dssp SSCEEEEEEEEE--ECCCCS----------SSBCCEEEEEEEEEEEEC
T ss_pred CceEEEEEEeec--CCCCCC----------CCeEEEEEEEEeeEEEcc
Confidence 533222333333 343210 011133556778888873
No 22
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=86.75 E-value=4.2 Score=36.29 Aligned_cols=66 Identities=15% Similarity=0.253 Sum_probs=48.9
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcE----------------------EEeCCceEeCCCCe
Q 029376 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKY----------------------CVRPNTGVVLPRST 65 (194)
Q Consensus 8 L~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~P~~Y----------------------~VrP~~GiI~P~~s 65 (194)
+.++-..-+|.-| ++..+-+|+++|.++.+|-..==+|+.-+| .|.|+ .-|.||++
T Consensus 250 V~~~v~~A~Y~vp-gR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~-~pI~PGET 327 (382)
T 1yew_A 250 VSVKVEDATYRVP-GRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDN-SPLAPGET 327 (382)
T ss_dssp EEEEEEEEEEESS-CSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCC-SCBCTTCE
T ss_pred eEEEeeccEEecC-CcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCC-CCcCCCce
Confidence 4444444566654 788899999999999999988667766665 23333 23899999
Q ss_pred EEEEEEeccC
Q 029376 66 CDVIVTMQSQ 75 (194)
Q Consensus 66 ~~I~Vtlq~~ 75 (194)
.+|.|+.|..
T Consensus 328 r~~~v~a~da 337 (382)
T 1yew_A 328 RTVDVTASDA 337 (382)
T ss_dssp EEEEEEEECH
T ss_pred eEEEEEeehH
Confidence 9999999864
No 23
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=85.09 E-value=3.4 Score=37.22 Aligned_cols=65 Identities=14% Similarity=0.281 Sum_probs=49.1
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEE--------------------E-eCCceEeCCCCeE
Q 029376 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYC--------------------V-RPNTGVVLPRSTC 66 (194)
Q Consensus 8 L~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~--------------------V-rP~~GiI~P~~s~ 66 (194)
+.++-..-+|.-+ ++...-+|+++|+++++|-+.==+|+.-+|. + .|+ -|.||++.
T Consensus 284 V~~~v~~A~Y~vp-gR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PGETr 360 (419)
T 3rfr_A 284 VTTELNGGVYKVP-GRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPGESK 360 (419)
T ss_dssp CEEEEEEEEEESS-SSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTTCEE
T ss_pred eEEEEeceEEecC-CcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCCcce
Confidence 4444445566655 7888999999999999998886666666554 1 233 59999999
Q ss_pred EEEEEeccC
Q 029376 67 DVIVTMQSQ 75 (194)
Q Consensus 67 ~I~Vtlq~~ 75 (194)
+|.|+.|..
T Consensus 361 t~~V~a~da 369 (419)
T 3rfr_A 361 EIVVKIQDA 369 (419)
T ss_dssp EEEEEEECH
T ss_pred EEEEEeehH
Confidence 999999864
No 24
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=54.97 E-value=34 Score=25.14 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=41.7
Q ss_pred eeEEEEEEEcCCCCeE-EEEeeecCCCcEEEe--CCce-EeCC--CCeEEEEEEeccCCcCCCCCCCCceEEEEEEE
Q 029376 24 QISCSLQLSNKTDNYV-AFKVKTTNPKKYCVR--PNTG-VVLP--RSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVV 94 (194)
Q Consensus 24 ~~~~~L~L~N~s~~~V-AFKVKTT~P~~Y~Vr--P~~G-iI~P--~~s~~I~Vtlq~~~e~p~d~~~kDKFlVqs~~ 94 (194)
...-.+..+|.+..+| -|.+..-.|+-|.++ |.+| .|.| +..++=.+.+...... ..+=|+.|.+..
T Consensus 30 ~~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i~n~~~~----~lklR~klsY~~ 102 (122)
T 3zy7_A 30 VTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQKQ----QLRMRIKLTFNW 102 (122)
T ss_dssp EEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEEECTTCC----CCCEEEEEEEEE
T ss_pred eEEEEEEEEECCCCccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEEECCCCC----CEEEEEEEEEEE
Confidence 3567788889987544 588888888877655 7777 6888 5555544444322111 345566665554
No 25
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=50.59 E-value=40 Score=26.17 Aligned_cols=65 Identities=17% Similarity=0.231 Sum_probs=50.8
Q ss_pred EEEEEEEcCCCCeEEEEeeecCCCcEEEeCCceEeCCCCeEEEE-EEeccCCcCCCCCCCCceEEEEEEEeCCC
Q 029376 26 SCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVI-VTMQSQKEAPPDMQCKDKFLLQGVVASPG 98 (194)
Q Consensus 26 ~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~-Vtlq~~~e~p~d~~~kDKFlVqs~~v~~~ 98 (194)
.-.+-|.|.|+.++.|-.-+...+.|.++ ..|.|+|+....|. +.+... ..--++.||-+....+
T Consensus 29 ~fe~YlVNdSNy~l~f~y~~~~~~~w~l~-~~G~iePntk~~ieef~~~el-------n~~~~~~vQ~layK~~ 94 (147)
T 2huh_A 29 PFEAYLVNDSNYYLYYTYLSAEGKAWNNR-SHGLVEPNTKLLLEEFTKDVL-------NEMERVAVQLIAFKDG 94 (147)
T ss_dssp CEEEEEEECSSSEEEEEEEEEETTEEEEE-EEEEECTTEEEEEEEECGGGG-------GGCSSEEEEEEEECSS
T ss_pred ceEEEEEeCCCcEEEEEEEEeeCCeEEEE-EeeEECCCcEEEEEeeChhHh-------cCCceEEEEEEEEcCC
Confidence 46778999999999999998888888777 68999999988874 333322 3456789998887764
No 26
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=48.33 E-value=59 Score=24.16 Aligned_cols=68 Identities=9% Similarity=0.044 Sum_probs=47.2
Q ss_pred CCeeEEEEEEEcCCCCe-EEEEeeecCCCcEEEeCCceEeCCCCeEEEEEEeccCCcCCCCCCCCceEEEEEEEeCCC
Q 029376 22 RKQISCSLQLSNKTDNY-VAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPG 98 (194)
Q Consensus 22 ~k~~~~~L~L~N~s~~~-VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~p~d~~~kDKFlVqs~~v~~~ 98 (194)
++.+...++++|.+... =+|+|+-...+...-.-..+ |.||++..|.++..+.. ...+-|...+-+.+
T Consensus 32 G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f~~~~~~--------~G~~~v~AvVD~~n 100 (127)
T 3idu_A 32 NKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNWTPTQ--------EGMYRINATVDEEN 100 (127)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEECCSS--------CEEEEEEEEESTTC
T ss_pred CCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEEEEEcCC--------CcEEEEEEEEcCCC
Confidence 66788999999998744 68888866666554333334 99999999999986431 34456666555544
No 27
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=44.58 E-value=83 Score=22.40 Aligned_cols=62 Identities=10% Similarity=0.129 Sum_probs=43.0
Q ss_pred eeEEecc--CCCeeEEEEEEEcCCC---CeEEEEeeecCCCcEEEeCCceEeCCCCeEEEEEEeccCC
Q 029376 14 ELQFPFE--LRKQISCSLQLSNKTD---NYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQK 76 (194)
Q Consensus 14 eL~F~~~--~~k~~~~~L~L~N~s~---~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~ 76 (194)
.++...+ -++...+.+.++|+=. ..+.|-|--..-.+=.... .|-|.||+++.+.+.+.|..
T Consensus 9 ~I~v~g~~~v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~~-~~~v~pg~~~~~~~~~~P~~ 75 (102)
T 2xzz_A 9 SLTLLGAAVVGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKILN-VGDIGGNETVTLRQSFVPVR 75 (102)
T ss_dssp EEEESSCCCSSSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEEE-ECCBCTTCEEEEEEEECCCS
T ss_pred EEEECCCcccCCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEEE-cCcCCCCCEEEEEEEEecCc
Confidence 4445443 3567899999999966 5668887764332221112 37799999999999998864
No 28
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=40.20 E-value=1.2e+02 Score=27.86 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=38.9
Q ss_pred eEEEEEEEcCCCCeEEEEeeecCCCc--EEEeCCceEe-CCCCeEEEEEEecc
Q 029376 25 ISCSLQLSNKTDNYVAFKVKTTNPKK--YCVRPNTGVV-LPRSTCDVIVTMQS 74 (194)
Q Consensus 25 ~~~~L~L~N~s~~~VAFKVKTT~P~~--Y~VrP~~GiI-~P~~s~~I~Vtlq~ 74 (194)
.+-+-+++|.....-.|+++.+.|.- -.|.|..=.+ ..+++..++|++..
T Consensus 539 ~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~ 591 (621)
T 3vta_A 539 QYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRG 591 (621)
T ss_dssp EEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEE
T ss_pred EEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEe
Confidence 44556799999999999999998875 4567887666 46888888888754
No 29
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=39.92 E-value=45 Score=24.69 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=29.5
Q ss_pred EEEEEEcCCCCeEE---EEeeecCCC---cEEEeCCceEeCCCCeEEE
Q 029376 27 CSLQLSNKTDNYVA---FKVKTTNPK---KYCVRPNTGVVLPRSTCDV 68 (194)
Q Consensus 27 ~~L~L~N~s~~~VA---FKVKTT~P~---~Y~VrP~~GiI~P~~s~~I 68 (194)
..++|.|.+++.+. |+++-...+ .|+. |..=+|.||.+++|
T Consensus 25 ~fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y~F-p~~~~L~pg~~vtV 71 (123)
T 3hn9_A 25 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKY-TSRYVLKAGQTVTI 71 (123)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEEC-CTTCEECTTCEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEEc-CCCcEECCCCEEEE
Confidence 37899999987775 788765443 3544 55558999998665
No 30
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=30.56 E-value=1.6e+02 Score=25.26 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=49.3
Q ss_pred EEEEEEcCCCCeEEEEeeecCCCcEEEeCCceEeCCCCeEEEEEEeccCCcCCCCCCCCceEEEEEEEeCCC
Q 029376 27 CSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPG 98 (194)
Q Consensus 27 ~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~Vtlq~~~e~p~d~~~kDKFlVqs~~v~~~ 98 (194)
-.+.|+|.++- -|.++-+.+..|.+.+..=-|+|+++.++.|.+....+ ...=+|-|.-+.+.++
T Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 334 (343)
T 3e38_A 270 VTLSITNVTDL--VLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGFKQGIK-----GGDVNFEVTNFIVAPD 334 (343)
T ss_dssp EEEEEEECSSS--CEEEEECSCCTTEECCSEEEECTTEEEEEEEEECTTCC-----CCEEEEEEEEEEEETT
T ss_pred eEEEeecCCCc--ceeeeccccccccccCceEEecCCCeEEEEEecccccc-----ceEEEEEeeeeeecCC
Confidence 58889998886 57777889999999999999999999999997753321 2345676665555443
No 31
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=29.66 E-value=69 Score=23.60 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=37.7
Q ss_pred cceEEeCCeeEEeccCCCeeEEEEEEEcCCCCe-----EEEEeeecC-------------C-CcE------EEeCCceEe
Q 029376 6 ELLNIEPQELQFPFELRKQISCSLQLSNKTDNY-----VAFKVKTTN-------------P-KKY------CVRPNTGVV 60 (194)
Q Consensus 6 ~lL~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~-----VAFKVKTT~-------------P-~~Y------~VrP~~GiI 60 (194)
+-+.++|.+|..+.. ...-.|+++|...-+ --|-+-+.. + ..| ++--..++|
T Consensus 10 d~m~F~p~~i~V~k~---G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l 86 (128)
T 2iaa_C 10 DSMQFNTKSIVVDKT---CKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVI 86 (128)
T ss_dssp TTSCBSCSEEEECTT---CSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCB
T ss_pred CCceEecCEEEEecC---CcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccccchhhccceee
Confidence 346677888777432 124589999998543 333333321 0 011 111124678
Q ss_pred CCCCeEEEEEEe
Q 029376 61 LPRSTCDVIVTM 72 (194)
Q Consensus 61 ~P~~s~~I~Vtl 72 (194)
.||++..|+++.
T Consensus 87 ~pGes~~vtf~~ 98 (128)
T 2iaa_C 87 GGGETDSVTFDV 98 (128)
T ss_dssp CTTCEEEEEEES
T ss_pred CCCCEEEEEEec
Confidence 999999999985
No 32
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=29.03 E-value=50 Score=21.53 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=16.4
Q ss_pred EEEEEcCCCCeEEEEeeecCC
Q 029376 28 SLQLSNKTDNYVAFKVKTTNP 48 (194)
Q Consensus 28 ~L~L~N~s~~~VAFKVKTT~P 48 (194)
.|+++..+.+.+.|||+.|.+
T Consensus 3 ~lkV~~~~g~~v~~~v~~~t~ 23 (72)
T 1wm3_A 3 NLKVAGQDGSVVQFKIKRHTP 23 (72)
T ss_dssp EEEEECTTSCEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEECCCCh
Confidence 577777777888888887765
No 33
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=28.35 E-value=87 Score=23.91 Aligned_cols=42 Identities=10% Similarity=0.059 Sum_probs=28.2
Q ss_pred EEEEEEcCCCCeEE---EEeeecCCCc--EEEeCCceEeCCCCeEEE
Q 029376 27 CSLQLSNKTDNYVA---FKVKTTNPKK--YCVRPNTGVVLPRSTCDV 68 (194)
Q Consensus 27 ~~L~L~N~s~~~VA---FKVKTT~P~~--Y~VrP~~GiI~P~~s~~I 68 (194)
..++|.|.+++.+. |+|+-...+. .+.-|..=+|.||.+++|
T Consensus 38 kfV~L~N~s~~~~~LgGW~L~r~v~g~~~~y~FP~~~~L~pg~~VtV 84 (144)
T 3jt0_A 38 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYVLKAGQTVTI 84 (144)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEECCTTCEECTTCEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEEcCCCcEECCCCEEEE
Confidence 47899999987774 6676443322 234455558999998665
No 34
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=27.69 E-value=1.3e+02 Score=22.14 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=28.1
Q ss_pred EEEEEEcCCCCeEE---EEeeecCC---CcEEEeCCceEeCCCCeEEE
Q 029376 27 CSLQLSNKTDNYVA---FKVKTTNP---KKYCVRPNTGVVLPRSTCDV 68 (194)
Q Consensus 27 ~~L~L~N~s~~~VA---FKVKTT~P---~~Y~VrP~~GiI~P~~s~~I 68 (194)
..++|.|.+++.+. |+++-... ..-+.-|..=+|.||.+++|
T Consensus 19 ~fV~l~N~s~~~~~L~gW~l~r~v~~~~~~~y~Fp~~~~L~pg~~vtI 66 (121)
T 1ifr_A 19 KFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVTI 66 (121)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTSCCEEEECCSSCEECTTCEEEE
T ss_pred CEEEEEeCCCCccccCCCEEEEEcCCCccEEEEeCCCcEECCCCEEEE
Confidence 37899999887764 67776522 22333566678899998653
No 35
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=26.74 E-value=66 Score=23.70 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=37.6
Q ss_pred ceEEeCCeeEEeccCCCeeEEEEEEEcCCCCe-----EEEEeeecC-------------C-CcE------EEeCCceEeC
Q 029376 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNY-----VAFKVKTTN-------------P-KKY------CVRPNTGVVL 61 (194)
Q Consensus 7 lL~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~-----VAFKVKTT~-------------P-~~Y------~VrP~~GiI~ 61 (194)
-+.++|.+|..+.. ...-.|+|+|...-+ --|-+-+.. + ..| .+--...+|.
T Consensus 12 ~m~F~p~~i~V~k~---G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~ 88 (129)
T 2ccw_A 12 AMQYNVKEIVVDKS---CKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTRVIAHTKVIG 88 (129)
T ss_dssp TSCBSCSEEEECTT---CSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBC
T ss_pred CccEecceEEEecC---CCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhcccccccccccccceeeeeEEC
Confidence 45677777777432 124589999998642 334443321 0 011 0111245789
Q ss_pred CCCeEEEEEEec
Q 029376 62 PRSTCDVIVTMQ 73 (194)
Q Consensus 62 P~~s~~I~Vtlq 73 (194)
||++..|+++..
T Consensus 89 pGet~svtf~~~ 100 (129)
T 2ccw_A 89 GGESDSVTFDVS 100 (129)
T ss_dssp TTCEEEEEEEGG
T ss_pred CCCEEEEEEecc
Confidence 999999999863
No 36
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=25.90 E-value=1e+02 Score=24.42 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=28.5
Q ss_pred EEEEEcCCCCeEEEEeeecCCCcEEEeCCceEeCCCCeEEEEE
Q 029376 28 SLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIV 70 (194)
Q Consensus 28 ~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~V 70 (194)
.|++.|+|..+|.|-=-+.+.+.+ . .+.|.|+++..+.+
T Consensus 139 ~l~v~Nptpy~vtl~~l~~~g~~~---~-~~mv~P~s~~~~~l 177 (205)
T 1klf_A 139 SLTLINPTPYYLTVTELNAGTRVL---E-NALVPPMGESTVKL 177 (205)
T ss_dssp EEEEEECSSSCEEEEEEESSSSBC---C-CEEECTTEEEEEEC
T ss_pred EEEEECCCCCEEEEEEEEeCCccc---c-cceEcCCCcceeec
Confidence 699999999999986333333333 2 37999999988764
No 37
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=24.76 E-value=76 Score=25.62 Aligned_cols=39 Identities=21% Similarity=0.201 Sum_probs=27.9
Q ss_pred EEEEEcCCCCeEEEEeeecCCCcEEEeCCceEeCCCCeEEEEE
Q 029376 28 SLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIV 70 (194)
Q Consensus 28 ~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~V 70 (194)
.|+++|+|..+|.|-=-+-+.+ .+ ..+.|.|+++..+.+
T Consensus 149 ~l~v~NptPyyvtl~~l~~~g~--~i--~~~mv~P~s~~~~~l 187 (218)
T 4ay0_A 149 KLIAENPSPFYMNIGELTFGGK--SI--PSHYIPPKSTWAFDL 187 (218)
T ss_dssp EEEEEECSSSCEEEEEEEETTE--EC--CCCEECTTEEEEEEC
T ss_pred EEEEECCCCCEEEEEEEEECCE--Ec--cCcEECCCCeeEEEC
Confidence 5999999999999852222333 33 248999999887764
No 38
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=24.63 E-value=68 Score=22.24 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=18.0
Q ss_pred EEEEEEEcCCCCeEEEEeeecCC
Q 029376 26 SCSLQLSNKTDNYVAFKVKTTNP 48 (194)
Q Consensus 26 ~~~L~L~N~s~~~VAFKVKTT~P 48 (194)
.-.|+++..+.+.|.|||+.|.+
T Consensus 5 ~i~ikVk~~~g~~v~~~vk~~t~ 27 (91)
T 2io0_B 5 HINLKVAGQDGSVVQFKIKRHTP 27 (91)
T ss_dssp EEEEEEECTTSCEEEEEEETTSC
T ss_pred eEEEEEECCCCCEEEEEECCCCh
Confidence 34778888778889999997766
No 39
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=24.43 E-value=1.7e+02 Score=19.74 Aligned_cols=52 Identities=23% Similarity=0.275 Sum_probs=32.9
Q ss_pred EEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCceEeCCCCeEEEEEEe
Q 029376 9 NIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTM 72 (194)
Q Consensus 9 ~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~Vtl 72 (194)
..+|.+|+.+. + .+-.+.++|.....-.|-+.... ..+.+.||++..+.++.
T Consensus 24 ~F~P~~i~v~~--G--~tV~~~~~n~d~~~H~~~~~~~~--------~~~~~~pg~~~~~~~t~ 75 (100)
T 4hci_A 24 YFNPNVITIPI--N--ESTTLLLKNKGKSEHTFTIKKLG--------IDVVVESGKEKNITVKP 75 (100)
T ss_dssp EEESSEEEECT--T--SCEEEEEEECSSSCEEEEEGGGT--------EEEEECTTCEEEEEECC
T ss_pred EEeCCEEEECC--C--CEEEEEEEcCCCceEEEEEecCC--------cceeecCCcceeEEEec
Confidence 35677766654 2 23567778887666666654322 13568899988887774
No 40
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=24.38 E-value=2.2e+02 Score=21.21 Aligned_cols=67 Identities=18% Similarity=0.220 Sum_probs=38.6
Q ss_pred eeEEEEEEEcCCCC-eEEEEeeecCCCcEEEe--CCce-EeCCCCe--EEEEEEeccCCcCCCCCCCCceEEEEEEE
Q 029376 24 QISCSLQLSNKTDN-YVAFKVKTTNPKKYCVR--PNTG-VVLPRST--CDVIVTMQSQKEAPPDMQCKDKFLLQGVV 94 (194)
Q Consensus 24 ~~~~~L~L~N~s~~-~VAFKVKTT~P~~Y~Vr--P~~G-iI~P~~s--~~I~Vtlq~~~e~p~d~~~kDKFlVqs~~ 94 (194)
...-.++.+|.+.. -=-|.+.--.|+-|.++ |.+| .|.|+.. ++-.+.+...... ..+=|+.|.+..
T Consensus 48 ~~~i~~~f~N~s~~~it~f~fQaAVPKs~kLqL~ppSg~~L~p~~~~~ItQ~m~I~n~~~~----~l~LR~klsY~~ 120 (140)
T 1gyu_A 48 VTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQKQ----QLRMRIKLTYNH 120 (140)
T ss_dssp EEEEEEEEEECSSSCBEEEEEEEECCTTCEEEECCCSCSCBCGGGCCCEEEEEEEECTTCC----CCCEEEEEEEEE
T ss_pred EEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCCCC----CEEEEEEEEEEE
Confidence 35567788898774 44677777788877665 6666 4777333 3333333221111 245566665554
No 41
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=24.37 E-value=2.5e+02 Score=21.83 Aligned_cols=51 Identities=12% Similarity=0.190 Sum_probs=39.7
Q ss_pred eeEEEEEEEcCCC-----CeEEEEeeecCCCc-EEEeCCceEeCCCCeEEEEEEecc
Q 029376 24 QISCSLQLSNKTD-----NYVAFKVKTTNPKK-YCVRPNTGVVLPRSTCDVIVTMQS 74 (194)
Q Consensus 24 ~~~~~L~L~N~s~-----~~VAFKVKTT~P~~-Y~VrP~~GiI~P~~s~~I~Vtlq~ 74 (194)
.....|+|+|+.+ .-++|.++...-.. --+.|..|.|.++++..|.|-+.-
T Consensus 63 ~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~Vpv~v 119 (174)
T 1yyc_A 63 DYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVKV 119 (174)
T ss_dssp EEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEEEEEE
Confidence 4568999999987 45799999855443 367799999999999888776653
No 42
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=24.15 E-value=1.1e+02 Score=19.82 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=30.6
Q ss_pred cceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCceEeCCCCeEEEEE
Q 029376 6 ELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIV 70 (194)
Q Consensus 6 ~lL~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~I~V 70 (194)
.-+..+|..|.++. +. .+++.|.+...-.|-+....+... ..+.+.||++..+.+
T Consensus 12 ~~~~f~P~~i~v~~--Gd----~V~~~n~~~~~H~v~~~~~~~~~~----~~~~~~~g~~~~~~f 66 (91)
T 1bxv_A 12 GMLAFEPSTIEIQA--GD----TVQWVNNKLAPHNVVVEGQPELSH----KDLAFSPGETFEATF 66 (91)
T ss_dssp SCSSEESSEEEECT--TC----EEEEEECSSCCEEEEETTCGGGCE----EEEECSTTCEEEEEC
T ss_pred CccEEeCCEEEECC--CC----EEEEEECCCCCcEEEEeCCCccCc----ccceeCCCCEEEEEe
Confidence 34667888887764 22 456778765333333332111110 235788998877754
No 43
>4gio_A Putative lipoprotein; unknown function; 1.90A {Campylobacter jejuni subsp}
Probab=24.00 E-value=1.4e+02 Score=21.48 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=33.9
Q ss_pred CCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCC------ceEeCCCCeEEEE
Q 029376 22 RKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPN------TGVVLPRSTCDVI 69 (194)
Q Consensus 22 ~k~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~------~GiI~P~~s~~I~ 69 (194)
+......++++|.++..+.||+.==..+-+.|.+. .=.|.++++..|.
T Consensus 35 nG~l~v~v~~~s~~~~~l~Yrf~WyD~~G~~v~~~~~~~W~~~~l~g~~~~~i~ 88 (107)
T 4gio_A 35 NGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVILR 88 (107)
T ss_dssp TSCEEEEEEECCSSCEEEEEEEEEECTTSCBCCSSCCCCCEEEEECTTCCEEEE
T ss_pred CCEEEEEEEecCCCceEEEEEEEEECCCCCCcCCCCCCCCEEEEEcCCCeEEEE
Confidence 44567889999999999999988667777777553 2245566655543
No 44
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=23.83 E-value=3.1e+02 Score=25.56 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=39.6
Q ss_pred eEEEEEEEcCCCCeEEEEeeecCCCcEE--EeCCceEe-CCCCeEEEEEEeccC
Q 029376 25 ISCSLQLSNKTDNYVAFKVKTTNPKKYC--VRPNTGVV-LPRSTCDVIVTMQSQ 75 (194)
Q Consensus 25 ~~~~L~L~N~s~~~VAFKVKTT~P~~Y~--VrP~~GiI-~P~~s~~I~Vtlq~~ 75 (194)
.+-+-+++|..+..-.|+++-+.|.... |.|..=.. ..+++....||+.+.
T Consensus 560 ~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~ 613 (649)
T 3i6s_A 560 QKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYI 613 (649)
T ss_dssp EEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEEC
T ss_pred EEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEec
Confidence 5678889999998889999999998765 56988776 489999999998754
No 45
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=23.19 E-value=1.2e+02 Score=20.09 Aligned_cols=59 Identities=10% Similarity=0.029 Sum_probs=32.4
Q ss_pred cceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeecC-CCcEE-EeCCceEeCCCCeEEEEE
Q 029376 6 ELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN-PKKYC-VRPNTGVVLPRSTCDVIV 70 (194)
Q Consensus 6 ~lL~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT~-P~~Y~-VrP~~GiI~P~~s~~I~V 70 (194)
.-+..+|..|..+. +. .+++.|.....-.|-+.... |..+. ..-..+.|.||++..+.+
T Consensus 12 ~~~~F~P~~i~v~~--G~----~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~tf 72 (97)
T 1b3i_A 12 YAPLYEPKALSISA--GD----TVEFVMNKVGPHNVIFDKVPAGESAPALSNTKLAIAPGSFYSVTL 72 (97)
T ss_dssp TEEEEESSEEEECT--TC----EEEEEECSSCCCCBEEEECCTTSCHHHHCBCCCCCSCSCCEEEEC
T ss_pred CccEEeCCEEEECC--CC----EEEEEECCCCCeEEEEeCCCCccccccccccceecCCCCEEEEEe
Confidence 45788888887764 22 46788887422233333221 11100 000346789999988755
No 46
>3o0l_A Uncharacterized protein; PFAM DUF1425 family member, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.81A {Shewanella loihica}
Probab=21.67 E-value=1.7e+02 Score=21.10 Aligned_cols=48 Identities=8% Similarity=0.012 Sum_probs=32.7
Q ss_pred CCeeEEEEEEEcCCCCe--EEEEeeecCCCcEEEeCCce-----EeCCCCeEEEE
Q 029376 22 RKQISCSLQLSNKTDNY--VAFKVKTTNPKKYCVRPNTG-----VVLPRSTCDVI 69 (194)
Q Consensus 22 ~k~~~~~L~L~N~s~~~--VAFKVKTT~P~~Y~VrP~~G-----iI~P~~s~~I~ 69 (194)
+....+...|+|.+..+ |.||+-==..+-+.|.|... +|.++++..|.
T Consensus 37 ~g~l~~~~~l~N~~~~~~~l~Yrf~WyD~~Gl~v~~~~~~W~~l~l~~~~~~~l~ 91 (112)
T 3o0l_A 37 AGFLRARGTIISKSPKDQRLQYKFTWYDINGATVEDEGVSWKSLKLHGKQQMQVT 91 (112)
T ss_dssp GGCEEEEEEEEECSSSCEEEEEEEEEECTTSCBCCCTTCCCEEEEECTTCEEEEE
T ss_pred CCeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCCCCCcEEEEECCCCeEEEE
Confidence 55678999999999877 77887666667777775411 35555555443
No 47
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=21.64 E-value=1.5e+02 Score=22.34 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=28.8
Q ss_pred EEEEEEcCCCCeEE---EEeeecCCC---cEEEeCCceEeCCCCeEEE
Q 029376 27 CSLQLSNKTDNYVA---FKVKTTNPK---KYCVRPNTGVVLPRSTCDV 68 (194)
Q Consensus 27 ~~L~L~N~s~~~VA---FKVKTT~P~---~Y~VrP~~GiI~P~~s~~I 68 (194)
..|+|.|.+++.+. |+++-...+ .-+.-|..=+|.||.+++|
T Consensus 34 efV~L~N~s~~~~~L~GW~L~r~v~g~~~~~y~Fp~~~~L~pg~~VtI 81 (139)
T 2lll_A 34 KFVQLKNNSDKDQSLGNWRIKRQVLEGEEIAYKFTPKYILRAGQMVTV 81 (139)
T ss_dssp SEEEEEECSSSCEECSSCEEEEEETTSCEEEEECCTTCEECTTCEEEE
T ss_pred CEEEEEECCCCccccCCCEEEEecCCCccEEEEECCCcEECCCCEEEE
Confidence 47899999987764 677765332 2233566678899998653
No 48
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=21.10 E-value=1.9e+02 Score=19.09 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=35.2
Q ss_pred CcceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeec-CCCcEEE---eCCceEeCCCCeEEEEEE
Q 029376 5 GELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTT-NPKKYCV---RPNTGVVLPRSTCDVIVT 71 (194)
Q Consensus 5 ~~lL~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT-~P~~Y~V---rP~~GiI~P~~s~~I~Vt 71 (194)
+.-+..+|..|.... +. .+++.|.....-.|-+... .|..+.- .-....|.||++..+.+.
T Consensus 10 ~~~~~F~P~~i~v~~--G~----~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~~~~~~~pG~~~~~tf~ 74 (98)
T 2plt_A 10 SGALEFVPKTLTIKS--GE----TVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGETYSVKLT 74 (98)
T ss_dssp TCCSSEESSEEEECT--TC----EEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEEEECSTTCEEEEECC
T ss_pred CCCceEeCCEEEECC--CC----EEEEEECCCCceEEEEeCCCCCCccccccccccceecCCCCEEEEEeC
Confidence 345778888887664 22 4677898764555555432 2222110 001357889999887553
No 49
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=20.85 E-value=1.1e+02 Score=20.35 Aligned_cols=61 Identities=15% Similarity=0.078 Sum_probs=34.4
Q ss_pred CcceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEeeec-CCCcEEEe-----CCceEeCCCCeEEEEEE
Q 029376 5 GELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTT-NPKKYCVR-----PNTGVVLPRSTCDVIVT 71 (194)
Q Consensus 5 ~~lL~I~P~eL~F~~~~~k~~~~~L~L~N~s~~~VAFKVKTT-~P~~Y~Vr-----P~~GiI~P~~s~~I~Vt 71 (194)
..-+..+|..|..+. + ..++++|.+...-.|-+... .|..+... .....|.||++..+.+.
T Consensus 9 ~~~~~F~P~~i~v~~--G----~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~~~~~~~~G~~~~~~f~ 75 (99)
T 1byp_A 9 DGGLAFVPSDLSIAS--G----EKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDLLNAPGEEYSVTLT 75 (99)
T ss_dssp TSCCSEESSEEEECT--T----EEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCCBCSTTCEEEEEEC
T ss_pred CCcceEeCCEEEECC--C----CEEEEEECCCCcceEEEeCCCCccccccccccccccceeeCCCCEEEEEeC
Confidence 345778898887764 2 24788898753333444432 22211100 11236789998888654
No 50
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=20.52 E-value=70 Score=23.15 Aligned_cols=62 Identities=13% Similarity=0.122 Sum_probs=35.4
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEc--CCCCeEEEEeeecC----------------------CCcEEEeCCceEeCCC
Q 029376 8 LNIEPQELQFPFELRKQISCSLQLSN--KTDNYVAFKVKTTN----------------------PKKYCVRPNTGVVLPR 63 (194)
Q Consensus 8 L~I~P~eL~F~~~~~k~~~~~L~L~N--~s~~~VAFKVKTT~----------------------P~~Y~VrP~~GiI~P~ 63 (194)
+.++|..|+++. + .+-.|+++| .+...--|-+.... ++...+......|.||
T Consensus 28 ~~F~P~~i~v~~--G--~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~pG 103 (140)
T 1qhq_A 28 LAFAQTSLSLPA--N--TVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAG 103 (140)
T ss_dssp SSBSCSEEEEET--T--CEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCTTCTTEEEECCCBCTT
T ss_pred ceEeCCeEEECC--C--CEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccccCccccccccccceeeCCC
Confidence 455666666654 2 346788889 44433333333211 0112233445688999
Q ss_pred CeEEEEEEec
Q 029376 64 STCDVIVTMQ 73 (194)
Q Consensus 64 ~s~~I~Vtlq 73 (194)
++..+.+++.
T Consensus 104 ~~~~~~~~~~ 113 (140)
T 1qhq_A 104 ESGSVTFRTP 113 (140)
T ss_dssp EEEEEEEECC
T ss_pred ceeEEEEEeC
Confidence 9999999873
No 51
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=20.34 E-value=66 Score=21.73 Aligned_cols=56 Identities=9% Similarity=0.111 Sum_probs=32.8
Q ss_pred CcceEEeCCeeEEeccCCCeeEEEEEEEcCCC--CeEEEEeeecCCCcEE-----------EeCCceEeCCCCeEEEEE
Q 029376 5 GELLNIEPQELQFPFELRKQISCSLQLSNKTD--NYVAFKVKTTNPKKYC-----------VRPNTGVVLPRSTCDVIV 70 (194)
Q Consensus 5 ~~lL~I~P~eL~F~~~~~k~~~~~L~L~N~s~--~~VAFKVKTT~P~~Y~-----------VrP~~GiI~P~~s~~I~V 70 (194)
+.-+..+|..|+... +. .+++.|... +.+.+. .|..+. +.-..+.|.||++..+++
T Consensus 9 ~~~~~F~P~~i~v~~--G~----tV~~~n~~~~~H~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~tf 77 (102)
T 1kdj_A 9 VGNFKFYPDSITVSA--GE----AVEFTLVGETGHNIVFD----IPAGAPGTVASELKAASMDENDLLSEDEPSFKAKV 77 (102)
T ss_dssp TCCCCEESSEEEECT--TC----CEEEEECSSSCBCCEEC----CCTTCCHHHHHHHHHTSCCTTCCBBTTBCEEEECC
T ss_pred CCccEEeCCEEEECC--CC----EEEEEECCCCCeEEEEe----CcccccccccchhhcccccccceecCCCCEEEEEe
Confidence 345788899888764 22 355778874 444432 232221 001346789999888755
No 52
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=20.23 E-value=93 Score=21.55 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=16.4
Q ss_pred EEEEEEEcCCCCeEEEEeeecCC
Q 029376 26 SCSLQLSNKTDNYVAFKVKTTNP 48 (194)
Q Consensus 26 ~~~L~L~N~s~~~VAFKVKTT~P 48 (194)
.-.|+++..+.+.|.|||+.+.+
T Consensus 7 ~i~ikVk~~~g~~i~~~v~~~t~ 29 (94)
T 2io1_B 7 HINLKVAGQDGSVVQFKIKRHTP 29 (94)
T ss_dssp EEEEEEECTTSCEEEEEEETTSC
T ss_pred eEEEEEECCCCCEEEEEECCCCH
Confidence 35677777777788888887655
No 53
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=20.01 E-value=72 Score=26.45 Aligned_cols=43 Identities=30% Similarity=0.385 Sum_probs=28.2
Q ss_pred EEEEEEEcCCCCeEEEE-eeec-CCCcEEEeCCceEeCCCCeEEEEE
Q 029376 26 SCSLQLSNKTDNYVAFK-VKTT-NPKKYCVRPNTGVVLPRSTCDVIV 70 (194)
Q Consensus 26 ~~~L~L~N~s~~~VAFK-VKTT-~P~~Y~VrP~~GiI~P~~s~~I~V 70 (194)
...|++.|+|..+|.|- |+-. ....+.. ..|.|.|+++..+.+
T Consensus 172 ~~~L~v~Nptpyyvtl~~l~~~~~~~~~~~--~~~mV~P~s~~~~~l 216 (257)
T 3q48_A 172 KTVVQVNNPTPYYVSFASVELIVDGRVMSV--GKGMVAPFSTKEFDW 216 (257)
T ss_dssp --CEEEEECSSSCEEEEEEEEEETTEEEEE--EEEEECTTEEEEECC
T ss_pred CcEEEEECCCceEEEEEEEEEccCCeeccc--cceeEcCCceeEEec
Confidence 34699999999999884 3322 2222322 348999999988754
Done!