BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029377
         (194 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZZQ|A Chain A, Crystal Structure Analysis Of The Hev Capsid Protein,
           Porf2
          Length = 552

 Score = 30.8 bits (68), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 133 MCAGLNIIMYASPLSAMVP--NGTGFLLGTAQLVLYAIYRNAK 173
           +  G N+++YA+PLS ++P  +GT   +   +   YA YR A+
Sbjct: 91  VATGTNLVLYAAPLSPLLPLQDGTNTHIMATEASNYAQYRVAR 133


>pdb|3IYO|A Chain A, Cryo-Em Model Of Virion-Sized Hev Virion-Sized Capsid
 pdb|3IYO|B Chain B, Cryo-Em Model Of Virion-Sized Hev Virion-Sized Capsid
 pdb|3IYO|D Chain D, Cryo-Em Model Of Virion-Sized Hev Virion-Sized Capsid
          Length = 660

 Score = 30.4 bits (67), Expect = 0.57,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 133 MCAGLNIIMYASPLSAMVP--NGTGFLLGTAQLVLYAIYRNAKPS 175
           +  G N+++YA+PLS ++P  +GT   +   +   YA YR A+ +
Sbjct: 147 VATGTNLVLYAAPLSPLLPLQDGTNTHIMATEASNYAQYRVARAT 191


>pdb|3HAG|A Chain A, Crystal Structure Of The Hepatitis E Virus-Like Particle
          Length = 504

 Score = 30.4 bits (67), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 133 MCAGLNIIMYASPLSAMVP--NGTGFLLGTAQLVLYAIYR 170
           +  G N+++YA+PLS+++P  +GT   +   +   YA YR
Sbjct: 37  IATGTNLVLYAAPLSSLLPLQDGTNTHIMATEASNYAQYR 76


>pdb|2ZTN|A Chain A, Hepatitis E Virus Orf2 (Genotype 3)
          Length = 478

 Score = 28.9 bits (63), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 133 MCAGLNIIMYASPLSAMVP--NGTGFLLGTAQLVLYAIYR 170
           + +G N+++YA+PL+ ++P  +GT   +   +   YA YR
Sbjct: 19  VASGTNLVLYAAPLNPLLPLQDGTNTHIMATEASNYAQYR 58


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.140    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,136,557
Number of Sequences: 62578
Number of extensions: 186030
Number of successful extensions: 388
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 386
Number of HSP's gapped (non-prelim): 8
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)