Query 029377
Match_columns 194
No_of_seqs 175 out of 1173
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 11:57:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029377.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029377hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1623 Multitransmembrane pro 100.0 8.3E-38 1.8E-42 258.2 13.0 173 2-178 3-216 (243)
2 PF03083 MtN3_slv: Sugar efflu 99.9 6E-23 1.3E-27 145.8 6.6 86 7-93 2-87 (87)
3 KOG1623 Multitransmembrane pro 99.6 9.9E-16 2.1E-20 127.1 5.9 87 5-93 125-212 (243)
4 COG4095 Uncharacterized conser 99.4 4.6E-12 1E-16 88.9 8.6 85 1-89 1-85 (89)
5 PF03083 MtN3_slv: Sugar efflu 98.6 8.5E-08 1.8E-12 67.7 5.0 46 129-174 2-87 (87)
6 PF04193 PQ-loop: PQ loop repe 98.1 1E-05 2.3E-10 53.1 6.5 57 6-65 3-59 (61)
7 TIGR00951 2A43 Lysosomal Cysti 97.2 0.029 6.2E-07 46.4 14.9 50 5-57 4-53 (220)
8 smart00679 CTNS Repeated motif 93.9 0.061 1.3E-06 30.3 2.5 24 22-45 2-25 (32)
9 TIGR00951 2A43 Lysosomal Cysti 92.4 0.9 1.9E-05 37.5 8.1 76 7-82 138-213 (220)
10 PF03650 MPC: Uncharacterised 89.9 0.21 4.6E-06 37.4 1.9 61 33-93 39-100 (119)
11 KOG1589 Uncharacterized conser 88.2 0.33 7.1E-06 35.7 1.8 57 33-89 43-100 (118)
12 KOG3211 Predicted endoplasmic 84.0 3.1 6.7E-05 34.2 5.6 70 20-89 154-223 (230)
13 KOG2913 Predicted membrane pro 83.9 7 0.00015 33.2 8.0 57 6-62 7-63 (260)
14 PHA02246 hypothetical protein 81.9 18 0.00038 28.6 8.8 32 15-46 116-147 (192)
15 KOG3211 Predicted endoplasmic 77.2 11 0.00024 31.0 6.7 51 6-59 32-82 (230)
16 PF10688 Imp-YgjV: Bacterial i 61.3 33 0.00071 26.9 6.2 35 45-80 118-152 (163)
17 PF05602 CLPTM1: Cleft lip and 51.4 30 0.00064 31.4 5.0 70 11-80 305-374 (438)
18 PF15102 TMEM154: TMEM154 prot 49.3 21 0.00046 27.7 3.2 27 150-176 63-89 (146)
19 PHA03049 IMV membrane protein; 49.0 8 0.00017 25.9 0.7 21 154-174 8-28 (68)
20 KOG1619 Cytochrome b [Energy p 48.5 1.4E+02 0.0031 25.1 8.2 27 150-176 205-232 (245)
21 KOG2913 Predicted membrane pro 48.1 13 0.00028 31.6 2.1 46 11-59 169-214 (260)
22 COG3952 Predicted membrane pro 47.6 1.1E+02 0.0024 22.5 7.3 46 41-87 57-103 (113)
23 KOG3618 Adenylyl cyclase [Gene 46.6 71 0.0015 31.7 6.8 121 45-174 86-212 (1318)
24 PF07578 LAB_N: Lipid A Biosyn 44.4 71 0.0015 21.8 4.8 51 23-76 13-64 (72)
25 PRK01637 hypothetical protein; 40.4 1.9E+02 0.0042 24.4 8.1 12 179-190 273-284 (286)
26 TIGR00341 conserved hypothetic 35.4 67 0.0014 28.3 4.5 51 42-93 244-294 (325)
27 PF07857 DUF1632: CEO family ( 33.3 1E+02 0.0022 26.1 5.2 66 5-71 180-254 (254)
28 PF01102 Glycophorin_A: Glycop 30.7 87 0.0019 23.5 3.9 35 4-41 67-101 (122)
29 PRK10580 proY putative proline 30.5 1.9E+02 0.0041 25.9 6.8 24 11-34 363-386 (457)
30 KOG2325 Predicted transporter/ 27.9 2.3E+02 0.0051 26.3 6.9 22 150-171 209-230 (488)
31 PRK11387 S-methylmethionine tr 26.9 4E+02 0.0086 24.0 8.3 22 12-33 371-392 (471)
32 PF06946 Phage_holin_5: Phage 26.4 2.5E+02 0.0054 20.1 7.4 64 27-92 22-85 (93)
33 PRK03427 cell division protein 25.4 78 0.0017 27.9 3.2 33 1-36 2-34 (333)
34 COG5130 YIP3 Prenylated rab ac 24.8 61 0.0013 25.2 2.2 25 125-149 114-138 (169)
35 PF05961 Chordopox_A13L: Chord 24.5 36 0.00079 22.9 0.8 22 154-175 8-29 (68)
36 KOG1545 Voltage-gated shaker-l 24.3 26 0.00057 31.5 0.1 43 127-181 420-462 (507)
37 PF05545 FixQ: Cbb3-type cytoc 23.5 1.8E+02 0.004 17.7 3.9 35 3-37 2-36 (49)
38 PF07857 DUF1632: CEO family ( 20.9 1.4E+02 0.003 25.3 3.8 24 150-173 116-139 (254)
39 PRK02935 hypothetical protein; 20.6 1.4E+02 0.003 22.0 3.2 44 95-142 11-58 (110)
No 1
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=100.00 E-value=8.3e-38 Score=258.19 Aligned_cols=173 Identities=44% Similarity=0.790 Sum_probs=149.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHHhccCCCeeEEeehhHHHHHHHHH
Q 029377 2 KDLSFYVGVIGNIISVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAVY 81 (194)
Q Consensus 2 ~~~~~~~g~~~~i~ti~~~~SPl~~~~~i~k~kst~~~s~lp~~~~~~n~~lW~~YG~l~~~~~~v~~~N~~G~~l~~~~ 81 (194)
+....++|..|+++++++|++|+|+++||+|+||+|++|+.||+++++||.+|+.||.+++||..++.+|.+|++++++|
T Consensus 3 ~~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~llitIN~~G~~ie~~Y 82 (243)
T KOG1623|consen 3 NVLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDYLLITINGIGLVIETVY 82 (243)
T ss_pred chHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCceEEEEEehhcHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999998875777889999999999999
Q ss_pred HHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccC-ceeeeehhhhHHHHHHHHhHhhHHhh-----------
Q 029377 82 VTLFFIYAPTKAMRAKTAIIFGILDVGFLGAAIAATRLALEG-EARIDAIGFMCAGLNIIMYASPLSAM----------- 149 (194)
Q Consensus 82 l~~~~~y~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~~~i~~y~sPL~~l----------- 149 (194)
+..|+.|+++|+ +.+.. ....+.++++..+++....|+ +.+.+.+|.+|++++++||||||+.|
T Consensus 83 i~~f~~ya~~k~-~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~ 158 (243)
T KOG1623|consen 83 ISIFLYYAPKKK-TVKIV---LALVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEY 158 (243)
T ss_pred HHHHheecCchh-eeEee---ehHHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCceee
Confidence 999999999887 23221 112234445555566666788 78899999999999999999999998
Q ss_pred -----------------------------hhhhHHHHHhhhhhheeEEEcCCCCCCCc
Q 029377 150 -----------------------------VPNGTGFLLGTAQLVLYAIYRNAKPSKNA 178 (194)
Q Consensus 150 -----------------------------vPN~~g~~l~~~Ql~L~~iYp~~~~~~~~ 178 (194)
+||++|..+|++||.||+.||+++.++..
T Consensus 159 mPf~Ls~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly~~y~~~~~~~~~ 216 (243)
T KOG1623|consen 159 MPFPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLILYFKYPKTTEKIVP 216 (243)
T ss_pred echHHHHHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHHHHHHHhhhcCCCcccccc
Confidence 89999999999999999999998854433
No 2
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.88 E-value=6e-23 Score=145.85 Aligned_cols=86 Identities=28% Similarity=0.656 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHHhccCCCeeEEeehhHHHHHHHHHHHHHH
Q 029377 7 YVGVIGNIISVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAVYVTLFF 86 (194)
Q Consensus 7 ~~g~~~~i~ti~~~~SPl~~~~~i~k~kst~~~s~lp~~~~~~n~~lW~~YG~l~~~~~~v~~~N~~G~~l~~~~l~~~~ 86 (194)
++|++|++.++++++||+++++|++|+||+|++|+.|+++.++||.+|+.||++.+|+ +++.+|.+|.+++.+|+.+|+
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~-~i~~~N~~g~~~~~~~~~~~~ 80 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDW-PIIVPNVFGLVLSIIYLVVYY 80 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCe-eEEeeHHHHHHHHHHHHhheE
Confidence 4789999999999999999999999999999999999999999999999999999776 678999999999999999999
Q ss_pred hcccchh
Q 029377 87 IYAPTKA 93 (194)
Q Consensus 87 ~y~~~~~ 93 (194)
+|+++||
T Consensus 81 ~y~~~~~ 87 (87)
T PF03083_consen 81 IYPSKKK 87 (87)
T ss_pred EeCCCCC
Confidence 9998875
No 3
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.60 E-value=9.9e-16 Score=127.05 Aligned_cols=87 Identities=25% Similarity=0.551 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcCCccchhH-HHHHHHHHHHHHHHhccCCCeeEEeehhHHHHHHHHHHH
Q 029377 5 SFYVGVIGNIISVLMFLAPVRTFWRIIKHRSTEEFQSLPY-ICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAVYVT 83 (194)
Q Consensus 5 ~~~~g~~~~i~ti~~~~SPl~~~~~i~k~kst~~~s~lp~-~~~~~n~~lW~~YG~l~~~~~~v~~~N~~G~~l~~~~l~ 83 (194)
...+|.+|.+++++||+||+..+++++|+||+|-+ |+|. .+.++++..|++||++. +|+++..+|.+|.+++..|+.
T Consensus 125 ~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~m-Pf~Ls~a~fl~a~~W~lYGlli-~D~~IaipN~iG~~l~~~QL~ 202 (243)
T KOG1623|consen 125 VSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYM-PFPLSFALFLVAVQWLLYGLLI-KDFFIAIPNVLGFLLGLIQLI 202 (243)
T ss_pred eeeeehhhhhhhHHhhhccHHhhhhheecCceeee-chHHHHHHHHHHHHHHHHHHHh-cCeEEEcccHHHHHHHHHHHH
Confidence 45789999999999999999999999999999977 5555 89999999999999998 555688999999999999999
Q ss_pred HHHhcccchh
Q 029377 84 LFFIYAPTKA 93 (194)
Q Consensus 84 ~~~~y~~~~~ 93 (194)
+|++|++++.
T Consensus 203 Ly~~y~~~~~ 212 (243)
T KOG1623|consen 203 LYFKYPKTTE 212 (243)
T ss_pred HhhhcCCCcc
Confidence 9999988764
No 4
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=4.6e-12 Score=88.85 Aligned_cols=85 Identities=20% Similarity=0.318 Sum_probs=75.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHHhccCCCeeEEeehhHHHHHHHH
Q 029377 1 MKDLSFYVGVIGNIISVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAV 80 (194)
Q Consensus 1 m~~~~~~~g~~~~i~ti~~~~SPl~~~~~i~k~kst~~~s~lp~~~~~~n~~lW~~YG~l~~~~~~v~~~N~~G~~l~~~ 80 (194)
||...+++|..|++.+...| +||..+++|+||++++|+..+......+.+|+.||++.+|- |+...|.++..++..
T Consensus 1 m~~~~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~l-Pii~aN~i~~il~li 76 (89)
T COG4095 1 MDFFIEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDL-PIIIANIISFILSLI 76 (89)
T ss_pred CcchhhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHH
Confidence 78888999999988887654 99999999999999999999999999999999999999654 677899999999999
Q ss_pred HHHHHHhcc
Q 029377 81 YVTLFFIYA 89 (194)
Q Consensus 81 ~l~~~~~y~ 89 (194)
-+.....|.
T Consensus 77 Il~~kI~~~ 85 (89)
T COG4095 77 ILFYKIKYI 85 (89)
T ss_pred HHHHHHHHH
Confidence 888777764
No 5
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=98.58 E-value=8.5e-08 Score=67.73 Aligned_cols=46 Identities=39% Similarity=0.673 Sum_probs=43.1
Q ss_pred ehhhhHHHHHHHHhHhhHHhh----------------------------------------hhhhHHHHHhhhhhheeEE
Q 029377 129 AIGFMCAGLNIIMYASPLSAM----------------------------------------VPNGTGFLLGTAQLVLYAI 168 (194)
Q Consensus 129 ~~G~~~~~~~i~~y~sPL~~l----------------------------------------vPN~~g~~l~~~Ql~L~~i 168 (194)
.+|.+|++.++++|+||+.++ +||++|..++.+|+.+|++
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~g~~~~~~~~~~~~~ 81 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDWPIIVPNVFGLVLSIIYLVVYYI 81 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCeeEEeeHHHHHHHHHHHHhheEE
Confidence 579999999999999999987 9999999999999999999
Q ss_pred EcCCCC
Q 029377 169 YRNAKP 174 (194)
Q Consensus 169 Yp~~~~ 174 (194)
|+++|+
T Consensus 82 y~~~~~ 87 (87)
T PF03083_consen 82 YPSKKK 87 (87)
T ss_pred eCCCCC
Confidence 999885
No 6
>PF04193 PQ-loop: PQ loop repeat
Probab=98.13 E-value=1e-05 Score=53.14 Aligned_cols=57 Identities=23% Similarity=0.336 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHHhccCCCe
Q 029377 6 FYVGVIGNIISVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRPGSY 65 (194)
Q Consensus 6 ~~~g~~~~i~ti~~~~SPl~~~~~i~k~kst~~~s~lp~~~~~~n~~lW~~YG~l~~~~~ 65 (194)
+++|+++ .++...+.+|++++.+|+||++++|...+.....+..+|+.|.+..++++
T Consensus 3 ~~~g~i~---~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~~ 59 (61)
T PF04193_consen 3 NILGIIS---IVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYPF 59 (61)
T ss_pred HHHHHHH---HHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3455555 44555788999999999999999999999999999999999999876553
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=97.18 E-value=0.029 Score=46.39 Aligned_cols=50 Identities=10% Similarity=-0.014 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHH
Q 029377 5 SFYVGVIGNIISVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYY 57 (194)
Q Consensus 5 ~~~~g~~~~i~ti~~~~SPl~~~~~i~k~kst~~~s~lp~~~~~~n~~lW~~Y 57 (194)
..++|+...+.. ..+-+|++.+.+|+||++++|+.-+..-......|..|
T Consensus 4 S~~lG~~~~~~~---~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 4 SQILGWGYVAAW---SISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HHHHHHHHHHHH---HHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 345555554444 45779999999999999999999988888999999999
No 8
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=93.93 E-value=0.061 Score=30.35 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHhcCcCCccchhHH
Q 029377 22 APVRTFWRIIKHRSTEEFQSLPYI 45 (194)
Q Consensus 22 SPl~~~~~i~k~kst~~~s~lp~~ 45 (194)
+-+|++.+++|+||++++|..-+.
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~ 25 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVL 25 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHH
Confidence 568999999999999999755544
No 9
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=92.36 E-value=0.9 Score=37.52 Aligned_cols=76 Identities=11% Similarity=0.133 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHHhccCCCeeEEeehhHHHHHHHHHH
Q 029377 7 YVGVIGNIISVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAVYV 82 (194)
Q Consensus 7 ~~g~~~~i~ti~~~~SPl~~~~~i~k~kst~~~s~lp~~~~~~n~~lW~~YG~l~~~~~~v~~~N~~G~~l~~~~l 82 (194)
.+..+..+--.....+-+||++.-.|+|||++.|......-+..+..=..-.+..++|+..+....++.+++.+.+
T Consensus 138 ~l~~l~~iki~is~ikyiPQi~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~~~~gd~~~l~~~~~s~~~n~i~~ 213 (220)
T TIGR00951 138 FVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLSIITVFLDFTGLLQRIFQSVNETGDPLKAGLFVVSSLFNGLFA 213 (220)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3333433334444568899999999999999999888876666644444444433344433344445555544443
No 10
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=89.85 E-value=0.21 Score=37.39 Aligned_cols=61 Identities=15% Similarity=0.213 Sum_probs=51.3
Q ss_pred hcCcCCccchhHHHHHHHHHHHHHHHhccC-CCeeEEeehhHHHHHHHHHHHHHHhcccchh
Q 029377 33 HRSTEEFQSLPYICTLLNSSLWTYYGITRP-GSYLVATVNGFGILVEAVYVTLFFIYAPTKA 93 (194)
Q Consensus 33 ~kst~~~s~lp~~~~~~n~~lW~~YG~l~~-~~~~v~~~N~~G~~l~~~~l~~~~~y~~~~~ 93 (194)
+|..|.+|.-.-.+.++.+.+|+.|++.+. .++.++.+|.+-...+.+|+.=++.|...++
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~~~ 100 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLYQLYRKLNYQYSQK 100 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 578999999888999999999999999554 5667889999999999999988877755443
No 11
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.17 E-value=0.33 Score=35.74 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=49.1
Q ss_pred hcCcCCccchhHHHHHHHHHHHHHHHhccC-CCeeEEeehhHHHHHHHHHHHHHHhcc
Q 029377 33 HRSTEEFQSLPYICTLLNSSLWTYYGITRP-GSYLVATVNGFGILVEAVYVTLFFIYA 89 (194)
Q Consensus 33 ~kst~~~s~lp~~~~~~n~~lW~~YG~l~~-~~~~v~~~N~~G~~l~~~~l~~~~~y~ 89 (194)
.|..|.+|.....+.+.....|..|++++. .++.++.+|.+=...+.+|+.=.+.|.
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~ 100 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAITGIYQLTRIANYQ 100 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 577888999999999999999999999554 456688999999999999998888883
No 12
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=83.99 E-value=3.1 Score=34.25 Aligned_cols=70 Identities=10% Similarity=0.131 Sum_probs=53.8
Q ss_pred HHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHHhccCCCeeEEeehhHHHHHHHHHHHHHHhcc
Q 029377 20 FLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAVYVTLFFIYA 89 (194)
Q Consensus 20 ~~SPl~~~~~i~k~kst~~~s~lp~~~~~~n~~lW~~YG~l~~~~~~v~~~N~~G~~l~~~~l~~~~~y~ 89 (194)
..|=++++..-.|+|++|..|.+.....+..|..=..|....++|+.+...-.+..+++..-..=..+|.
T Consensus 154 v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~ 223 (230)
T KOG3211|consen 154 VVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRYW 223 (230)
T ss_pred hHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHH
Confidence 4577899999999999999999999999999999999999888887655444555555544444344443
No 13
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=83.88 E-value=7 Score=33.22 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHHhccC
Q 029377 6 FYVGVIGNIISVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRP 62 (194)
Q Consensus 6 ~~~g~~~~i~ti~~~~SPl~~~~~i~k~kst~~~s~lp~~~~~~n~~lW~~YG~l~~ 62 (194)
+.-..++++.+++-..+-.|++.+..|+||.+++|+.+.+.-.+....=+.|..+.+
T Consensus 7 ~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~ 63 (260)
T KOG2913|consen 7 TLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQP 63 (260)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcc
Confidence 444566777777777788999999999999999999888766666666666766553
No 14
>PHA02246 hypothetical protein
Probab=81.89 E-value=18 Score=28.60 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=25.6
Q ss_pred HHHHHHHhhHHHHHHHHHhcCcCCccchhHHH
Q 029377 15 ISVLMFLAPVRTFWRIIKHRSTEEFQSLPYIC 46 (194)
Q Consensus 15 ~ti~~~~SPl~~~~~i~k~kst~~~s~lp~~~ 46 (194)
.++...++.++|+.+-.|+|++|+.|+.-++.
T Consensus 116 at~tIiLaYi~QIIqfyKTK~SEg~n~~l~li 147 (192)
T PHA02246 116 ATITIILAYVTQITTFYKTKSAEGTNRFLFLI 147 (192)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCChhHHHH
Confidence 34455568899999999999999998776643
No 15
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=77.17 E-value=11 Score=31.04 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHHh
Q 029377 6 FYVGVIGNIISVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGI 59 (194)
Q Consensus 6 ~~~g~~~~i~ti~~~~SPl~~~~~i~k~kst~~~s~lp~~~~~~n~~lW~~YG~ 59 (194)
..+|+.....++.. -+|++.+|+.+||++++|...+..-++.-..-+.|.+
T Consensus 32 klLg~~~va~sl~v---KlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~ 82 (230)
T KOG3211|consen 32 KLLGLSTVAGSLLV---KLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSY 82 (230)
T ss_pred hhhhHHHHHHHHHh---hhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehh
Confidence 44555444444443 4899999999999999999999888888888899987
No 16
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=61.30 E-value=33 Score=26.89 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhccCCCeeEEeehhHHHHHHHH
Q 029377 45 ICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAV 80 (194)
Q Consensus 45 ~~~~~n~~lW~~YG~l~~~~~~v~~~N~~G~~l~~~ 80 (194)
...++++.+|+.|+++.++++ ....|..-...+.+
T Consensus 118 ~~~l~~~~~w~~~n~~igS~~-g~l~e~~~~~~n~~ 152 (163)
T PF10688_consen 118 ILMLVGTLCWLIYNILIGSWG-GTLMEALFIISNLI 152 (163)
T ss_pred HHHHHHHHHHHHHHHHHcCHH-HHHHHHHHHHHHHH
Confidence 578999999999999987764 44667666666554
No 17
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=51.43 E-value=30 Score=31.43 Aligned_cols=70 Identities=23% Similarity=0.276 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHHhccCCCeeEEeehhHHHHHHHH
Q 029377 11 IGNIISVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAV 80 (194)
Q Consensus 11 ~~~i~ti~~~~SPl~~~~~i~k~kst~~~s~lp~~~~~~n~~lW~~YG~l~~~~~~v~~~N~~G~~l~~~ 80 (194)
++.+-++.=|++-=.++.-++++||.+++|....+..+++...=++|=+=.+..+.|.+++++|++++++
T Consensus 305 vs~lH~~f~fLAFKnDi~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL~D~~ts~lil~~~gig~~ie~W 374 (438)
T PF05602_consen 305 VSLLHSVFDFLAFKNDISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYLLDNETSWLILVPSGIGLLIEAW 374 (438)
T ss_pred HHHHHHHHHHHhhhhHHHHHhccCCcccccHHHHHHHHHHHHheeeeEEeCCCcEEeehHhHhHHhHhhe
Confidence 4455566677888889999999999999999999999999888888853112256788999999998875
No 18
>PF15102 TMEM154: TMEM154 protein family
Probab=49.27 E-value=21 Score=27.71 Aligned_cols=27 Identities=19% Similarity=0.232 Sum_probs=18.1
Q ss_pred hhhhHHHHHhhhhhheeEEEcCCCCCC
Q 029377 150 VPNGTGFLLGTAQLVLYAIYRNAKPSK 176 (194)
Q Consensus 150 vPN~~g~~l~~~Ql~L~~iYp~~~~~~ 176 (194)
+|-+++++|-+.=..|..+|+|++.+.
T Consensus 63 IP~VLLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 63 IPLVLLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred HHHHHHHHHHHHHHHheeEEeecccCC
Confidence 676666666566677878887766544
No 19
>PHA03049 IMV membrane protein; Provisional
Probab=49.03 E-value=8 Score=25.92 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=15.4
Q ss_pred HHHHHhhhhhheeEEEcCCCC
Q 029377 154 TGFLLGTAQLVLYAIYRNAKP 174 (194)
Q Consensus 154 ~g~~l~~~Ql~L~~iYp~~~~ 174 (194)
+++...++-+++|.+|.+++.
T Consensus 8 ~iICVaIi~lIvYgiYnkk~~ 28 (68)
T PHA03049 8 VIICVVIIGLIVYGIYNKKTT 28 (68)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 344556778889999987665
No 20
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=48.48 E-value=1.4e+02 Score=25.10 Aligned_cols=27 Identities=19% Similarity=0.037 Sum_probs=20.0
Q ss_pred hhhhHHHHHhhhh-hheeEEEcCCCCCC
Q 029377 150 VPNGTGFLLGTAQ-LVLYAIYRNAKPSK 176 (194)
Q Consensus 150 vPN~~g~~l~~~Q-l~L~~iYp~~~~~~ 176 (194)
+-|++|..+-+.- ++++.+=|++-+++
T Consensus 205 l~n~~gv~~il~g~~Vl~~v~~~~~kr~ 232 (245)
T KOG1619|consen 205 LVNFLGVFIILFGVLVLTLVTPPPWKRP 232 (245)
T ss_pred HHHHHHHHHHHHHHHheEEEecCCCCCC
Confidence 8899998887777 77777777655443
No 21
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=48.09 E-value=13 Score=31.56 Aligned_cols=46 Identities=24% Similarity=0.243 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHHh
Q 029377 11 IGNIISVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGI 59 (194)
Q Consensus 11 ~~~i~ti~~~~SPl~~~~~i~k~kst~~~s~lp~~~~~~n~~lW~~YG~ 59 (194)
+|.+.+++-..+.+||+..-+|+|++++++++.|. +++..=..|+.
T Consensus 169 lG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~---~~~~~n~~y~~ 214 (260)
T KOG2913|consen 169 LGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFA---FNSLGNTTYIL 214 (260)
T ss_pred HHHHHHHHHcccccchhhhhhccCccchhHHHHHH---HHHcccccccc
Confidence 45566677778999999999999999999875553 33333345654
No 22
>COG3952 Predicted membrane protein [Function unknown]
Probab=47.55 E-value=1.1e+02 Score=22.49 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=35.2
Q ss_pred chhH-HHHHHHHHHHHHHHhccCCCeeEEeehhHHHHHHHHHHHHHHh
Q 029377 41 SLPY-ICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAVYVTLFFI 87 (194)
Q Consensus 41 ~lp~-~~~~~n~~lW~~YG~l~~~~~~v~~~N~~G~~l~~~~l~~~~~ 87 (194)
|.+| -++++.+.+-+.|-+-++|...| ..|+.|++..+.-+-+...
T Consensus 57 P~~FW~~sllGg~l~L~Yfi~~~DpV~V-l~~~~glF~~l~nL~L~~k 103 (113)
T COG3952 57 PVLFWYFSLLGGLLLLSYFIRRQDPVFV-LGQACGLFIYLRNLWLIIK 103 (113)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhcchHHH-HHHhhhHHHHHHHHHHHHH
Confidence 5556 68889999999999988776555 6788888887776666544
No 23
>KOG3618 consensus Adenylyl cyclase [General function prediction only]
Probab=46.63 E-value=71 Score=31.75 Aligned_cols=121 Identities=17% Similarity=0.279 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHhccCCC-eeEEeehhHHHHHHHHHH-HHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029377 45 ICTLLNSSLWTYYGITRPGS-YLVATVNGFGILVEAVYV-TLFFIYAPTKAMRAKTAIIFGILDVGFLGAAIAATRLALE 122 (194)
Q Consensus 45 ~~~~~n~~lW~~YG~l~~~~-~~v~~~N~~G~~l~~~~l-~~~~~y~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (194)
.-..+.|.+|.+|=.+.... +++.+.-.+.+ ++++.. +.++.+++.-+ |.+++..++ ..+++.++.+. .+...
T Consensus 86 ~YI~~~~l~W~lYfav~~rs~fi~~~~~slc~-lslv~~mf~~ft~~~lY~-rhy~~TS~~-~tlLvc~~tLa--~ltat 160 (1318)
T KOG3618|consen 86 FYIGFACLLWSLYFAVHMRSRFIVMVAPSLCF-LSLVCVMFFLFTFTKLYA-RHYAWTSLA-LTLLVCALTLA--NLTAT 160 (1318)
T ss_pred HHHHHHHHHHHHHheeccCceeeeehHHHHHH-HHHHHHHHHHHHHHHHHH-HHhhHHHHH-HHHHHHHHHHH--Hhhhc
Confidence 45567899999998766544 54433322322 222222 22222222222 444432221 21222222221 12122
Q ss_pred C-ceeeeehhhhHHHHHHHHh---HhhHHhhhhhhHHHHHhhhhhheeEEEcCCCC
Q 029377 123 G-EARIDAIGFMCAGLNIIMY---ASPLSAMVPNGTGFLLGTAQLVLYAIYRNAKP 174 (194)
Q Consensus 123 ~-~~~~~~~G~~~~~~~i~~y---~sPL~~lvPN~~g~~l~~~Ql~L~~iYp~~~~ 174 (194)
. ..-.+.+|-++..+-+.+- +-| .|=-+|+.++++-=++|=.+.....
T Consensus 161 ~r~af~spvgsfa~c~evvlLiYTv~p----lPLyL~~~~gi~YSilFE~~~~~~i 212 (1318)
T KOG3618|consen 161 ARPAFLSPVGSFAMCIEVVLLIYTVMP----LPLYLSLCLGIAYSILFETFGYHFI 212 (1318)
T ss_pred cchhhhCchhHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 2 2233557777666555432 233 5777888888888777755544433
No 24
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=44.44 E-value=71 Score=21.78 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhcCcCCccchhH-HHHHHHHHHHHHHHhccCCCeeEEeehhHHHH
Q 029377 23 PVRTFWRIIKHRSTEEFQSLPY-ICTLLNSSLWTYYGITRPGSYLVATVNGFGIL 76 (194)
Q Consensus 23 Pl~~~~~i~k~kst~~~s~lp~-~~~~~n~~lW~~YG~l~~~~~~v~~~N~~G~~ 76 (194)
-+-|...-.|+|. +.-|..| ...++.+.+=+.||+..+|.. .+...+.|.+
T Consensus 13 f~~QW~~SEk~k~--sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV-~ilgq~~gl~ 64 (72)
T PF07578_consen 13 FIVQWIYSEKAKK--SVVPVAFWYLSLIGSLLLLIYAIIRKDPV-FILGQSFGLF 64 (72)
T ss_pred HHHHHHHHHHcCC--CCCcHHHHHHHHHHHHHHHHHHHHHcChH-HHHHHhcChH
Confidence 3444444444443 2235555 799999999999999875542 3233444443
No 25
>PRK01637 hypothetical protein; Reviewed
Probab=40.43 E-value=1.9e+02 Score=24.37 Aligned_cols=12 Identities=25% Similarity=0.493 Sum_probs=8.9
Q ss_pred cccccccCCCCC
Q 029377 179 ANSMEEGAQHEP 190 (194)
Q Consensus 179 ~~~~~~~~~~~~ 190 (194)
+.+.||+..|||
T Consensus 273 ~~~~~~~~~~~~ 284 (286)
T PRK01637 273 KQAAEQEEDDEP 284 (286)
T ss_pred hccccccccccc
Confidence 467777777887
No 26
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=35.38 E-value=67 Score=28.25 Aligned_cols=51 Identities=10% Similarity=0.053 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCeeEEeehhHHHHHHHHHHHHHHhcccchh
Q 029377 42 LPYICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAVYVTLFFIYAPTKA 93 (194)
Q Consensus 42 lp~~~~~~n~~lW~~YG~l~~~~~~v~~~N~~G~~l~~~~l~~~~~y~~~~~ 93 (194)
+|-.+...-+..|-.+....+ .+.++..|.+|..++..-.+.++-+++++.
T Consensus 244 vPPa~~~Gi~la~g~~~~a~g-a~~L~~~Nl~~I~la~~~vf~~~g~~p~~~ 294 (325)
T TIGR00341 244 LPPAVATGILLVISPLPLAVK-SLILTLINVAGLMAGSLAGVYVYGIRAYRY 294 (325)
T ss_pred hchHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCcchh
Confidence 444444555555555554442 345678999999999887777777766543
No 27
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=33.28 E-value=1e+02 Score=26.06 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhcC---cCCccchhHH------HHHHHHHHHHHHHhccCCCeeEEeeh
Q 029377 5 SFYVGVIGNIISVLMFLAPVRTFWRIIKHRS---TEEFQSLPYI------CTLLNSSLWTYYGITRPGSYLVATVN 71 (194)
Q Consensus 5 ~~~~g~~~~i~ti~~~~SPl~~~~~i~k~ks---t~~~s~lp~~------~~~~n~~lW~~YG~l~~~~~~v~~~N 71 (194)
+.++|...++++=++|.+-+--+.-++.+.+ ..+-+.+.|+ ..+.++..+..|...++|.+.+ .+|
T Consensus 180 ~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~~rn~P~v-~p~ 254 (254)
T PF07857_consen 180 KRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCIIKRNKPKV-YPN 254 (254)
T ss_pred chhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHhhcCCCCC-CCC
Confidence 3577888888888888887766666666652 2233344442 4455666677788877776543 444
No 28
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=30.66 E-value=87 Score=23.52 Aligned_cols=35 Identities=17% Similarity=0.525 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcCCccc
Q 029377 4 LSFYVGVIGNIISVLMFLAPVRTFWRIIKHRSTEEFQS 41 (194)
Q Consensus 4 ~~~~~g~~~~i~ti~~~~SPl~~~~~i~k~kst~~~s~ 41 (194)
...++|++|.++.+.++++.+ .+-+|+|+..+..+
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~---irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYC---IRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHS---------
T ss_pred eehhHHHHHHHHHHHHHHHHH---HHHHhccCCCCCCC
Confidence 456788888887776654332 23333344344444
No 29
>PRK10580 proY putative proline-specific permease; Provisional
Probab=30.55 E-value=1.9e+02 Score=25.94 Aligned_cols=24 Identities=4% Similarity=0.123 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhc
Q 029377 11 IGNIISVLMFLAPVRTFWRIIKHR 34 (194)
Q Consensus 11 ~~~i~ti~~~~SPl~~~~~i~k~k 34 (194)
+++......|..+.....+.+|++
T Consensus 363 ~~~~~~~~~y~~~~~~~~~lr~~~ 386 (457)
T PRK10580 363 LATFATVWVWIMILLSQIAFRRRL 386 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455556665655555553
No 30
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=27.94 E-value=2.3e+02 Score=26.33 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=16.6
Q ss_pred hhhhHHHHHhhhhhheeEEEcC
Q 029377 150 VPNGTGFLLGTAQLVLYAIYRN 171 (194)
Q Consensus 150 vPN~~g~~l~~~Ql~L~~iYp~ 171 (194)
.|..+.+++.++-.+....+-+
T Consensus 209 ap~w~m~i~~i~~~v~i~~~f~ 230 (488)
T KOG2325|consen 209 APAWLMAILWIIYIVIILFFFK 230 (488)
T ss_pred hHHHHHHHHHHHHHHHHHhhee
Confidence 8888888888888777665543
No 31
>PRK11387 S-methylmethionine transporter; Provisional
Probab=26.95 E-value=4e+02 Score=23.97 Aligned_cols=22 Identities=9% Similarity=0.221 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHh
Q 029377 12 GNIISVLMFLAPVRTFWRIIKH 33 (194)
Q Consensus 12 ~~i~ti~~~~SPl~~~~~i~k~ 33 (194)
++...+..|+.+.-...+.+|+
T Consensus 371 ~~~~~li~y~~~~~~~i~lr~~ 392 (471)
T PRK11387 371 SGFAVVAVWLSICASHFMFRRR 392 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455554444444443
No 32
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=26.39 E-value=2.5e+02 Score=20.14 Aligned_cols=64 Identities=16% Similarity=0.043 Sum_probs=39.7
Q ss_pred HHHHHHhcCcCCccchhHHHHHHHHHHHHHHHhccCCCeeEEeehhHHHHHHHHHHHHHHhcccch
Q 029377 27 FWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAVYVTLFFIYAPTK 92 (194)
Q Consensus 27 ~~~i~k~kst~~~s~lp~~~~~~n~~lW~~YG~l~~~~~~v~~~N~~G~~l~~~~l~~~~~y~~~~ 92 (194)
+.-|.|++.. +-+.+|.+...+...+=..+.++.+|..+. .--..|.+.++.-..++=.++++.
T Consensus 22 Vq~IkkT~~v-~~K~iPlIs~viGilLG~~~~~~~~~~~l~-~~~~aG~laGlAaTGL~e~~t~r~ 85 (93)
T PF06946_consen 22 VQAIKKTKVV-PNKWIPLISVVIGILLGAAAYPLTGDGNLA-LMAWAGGLAGLAATGLFEQFTNRS 85 (93)
T ss_pred HHHHHHhccC-CcchhhHHHHHHHHHHHHHhhhcCCCccHH-HHHHHHHHhhhhhhhHHHHHHhhh
Confidence 3444454432 345888888888888888887776544222 222457777777777766665544
No 33
>PRK03427 cell division protein ZipA; Provisional
Probab=25.39 E-value=78 Score=27.94 Aligned_cols=33 Identities=33% Similarity=0.659 Sum_probs=24.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCc
Q 029377 1 MKDLSFYVGVIGNIISVLMFLAPVRTFWRIIKHRST 36 (194)
Q Consensus 1 m~~~~~~~g~~~~i~ti~~~~SPl~~~~~i~k~kst 36 (194)
|++.+.++=++|.|.-+.+. +-.+|.++|+||.
T Consensus 2 MqdLrLiLivvGAIAIiAlL---~HGlWtsRKers~ 34 (333)
T PRK03427 2 MQDLRLILIIVGAIAIIALL---VHGFWTSRKERSS 34 (333)
T ss_pred chhhhhHHHHHHHHHHHHHH---HHhhhhccccccc
Confidence 77777777777777666665 6677888888864
No 34
>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]
Probab=24.80 E-value=61 Score=25.22 Aligned_cols=25 Identities=20% Similarity=0.470 Sum_probs=21.6
Q ss_pred eeeeehhhhHHHHHHHHhHhhHHhh
Q 029377 125 ARIDAIGFMCAGLNIIMYASPLSAM 149 (194)
Q Consensus 125 ~~~~~~G~~~~~~~i~~y~sPL~~l 149 (194)
...-..|++|+.+-+.+++||.+++
T Consensus 114 ~~~ly~glvcvlip~gffaspI~tl 138 (169)
T COG5130 114 RSVLYAGLVCVLIPFGFFASPIVTL 138 (169)
T ss_pred cchhhhhHHHHHHHHHHHHhHHHHH
Confidence 3345679999999999999999996
No 35
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=24.47 E-value=36 Score=22.89 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=16.1
Q ss_pred HHHHHhhhhhheeEEEcCCCCC
Q 029377 154 TGFLLGTAQLVLYAIYRNAKPS 175 (194)
Q Consensus 154 ~g~~l~~~Ql~L~~iYp~~~~~ 175 (194)
+++...++-+++|.+|.+++..
T Consensus 8 i~ICVaii~lIlY~iYnr~~~~ 29 (68)
T PF05961_consen 8 IIICVAIIGLILYGIYNRKKTT 29 (68)
T ss_pred HHHHHHHHHHHHHHHHhccccc
Confidence 4555667788899999876653
No 36
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=24.32 E-value=26 Score=31.47 Aligned_cols=43 Identities=21% Similarity=0.330 Sum_probs=34.1
Q ss_pred eeehhhhHHHHHHHHhHhhHHhhhhhhHHHHHhhhhhheeEEEcCCCCCCCcccc
Q 029377 127 IDAIGFMCAGLNIIMYASPLSAMVPNGTGFLLGTAQLVLYAIYRNAKPSKNAANS 181 (194)
Q Consensus 127 ~~~~G~~~~~~~i~~y~sPL~~lvPN~~g~~l~~~Ql~L~~iYp~~~~~~~~~~~ 181 (194)
.+++|-+|++..+...|.|.-.++.|+ =+.|+++++.++..+-
T Consensus 420 GKIVGslCAiaGVLTiALPVPVIVsNF------------nyFYhrEte~ee~~~~ 462 (507)
T KOG1545|consen 420 GKIVGSLCAIAGVLTIALPVPVIVSNF------------NYFYHRETEGEEQAQY 462 (507)
T ss_pred ceehhhHHhhhhheEecccccEEEecc------------cceeeccccchhhhcc
Confidence 467899999999999999999888885 2678887776655443
No 37
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=23.51 E-value=1.8e+02 Score=17.66 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcC
Q 029377 3 DLSFYVGVIGNIISVLMFLAPVRTFWRIIKHRSTE 37 (194)
Q Consensus 3 ~~~~~~g~~~~i~ti~~~~SPl~~~~~i~k~kst~ 37 (194)
...++.+..-.+.++.+++.-+-.+.-..+.|+.+
T Consensus 2 ~~~~~~~~~~~~~~v~~~~~F~gi~~w~~~~~~k~ 36 (49)
T PF05545_consen 2 TYETLQGFARSIGTVLFFVFFIGIVIWAYRPRNKK 36 (49)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchh
Confidence 45556666666777777766666666666655433
No 38
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=20.95 E-value=1.4e+02 Score=25.32 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=18.9
Q ss_pred hhhhHHHHHhhhhhheeEEEcCCC
Q 029377 150 VPNGTGFLLGTAQLVLYAIYRNAK 173 (194)
Q Consensus 150 vPN~~g~~l~~~Ql~L~~iYp~~~ 173 (194)
.=|.+|+.+.++-..+|..-.+++
T Consensus 116 ~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 116 WLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred HHHHHHHHHHHHHHHheeeecCCC
Confidence 678999999999999886554433
No 39
>PRK02935 hypothetical protein; Provisional
Probab=20.60 E-value=1.4e+02 Score=22.00 Aligned_cols=44 Identities=14% Similarity=0.272 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccC----ceeeeehhhhHHHHHHHHh
Q 029377 95 RAKTAIIFGILDVGFLGAAIAATRLALEG----EARIDAIGFMCAGLNIIMY 142 (194)
Q Consensus 95 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~G~~~~~~~i~~y 142 (194)
|.|.+.+. +.+++..+.|.++..++ -..-..+|+++...+...|
T Consensus 11 kiRt~aL~----lvfiG~~vMy~Giff~~~~~~m~ifm~~G~l~~l~S~vvY 58 (110)
T PRK02935 11 KIRTFALS----LVFIGFIVMYLGIFFRESIIIMTIFMLLGFLAVIASTVVY 58 (110)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554322 33444455554443333 2223345777777666655
Done!