Query 029377
Match_columns 194
No_of_seqs 175 out of 1173
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 19:35:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029377.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029377hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b2h_A AMT-1, ammonium transpo 9.5 2.1E+02 0.0071 24.6 3.2 30 30-59 30-59 (399)
2 2grg_A Hypothetical protein; Y 6.2 40 0.0014 24.0 -2.4 17 141-157 23-40 (120)
3 1u7g_A Probable ammonium trans 5.1 3.4E+02 0.011 23.1 2.3 30 30-59 35-64 (385)
4 2nr1_A NR1 M2, M2; receptor, s 4.7 4.8E+02 0.016 13.5 2.0 14 48-61 8-21 (27)
5 3zux_A Transporter, ASBTNM; tr 4.6 2.1E+02 0.0072 23.6 0.7 26 133-158 273-306 (332)
6 3dad_A FH1/FH2 domain-containi 4.3 4.5E+02 0.015 22.1 2.5 29 24-52 256-284 (339)
7 3qrx_B Melittin; calcium-bindi 4.2 5.2E+02 0.018 13.1 1.7 15 21-35 10-24 (26)
8 3d6r_B NS1, NS1A, non-structur 4.1 2.3E+02 0.0079 20.6 0.5 20 144-163 89-115 (158)
9 3bkd_A Transmembrane domain of 3.9 1.2E+02 0.0041 15.5 -0.9 9 67-75 6-14 (26)
10 3l1l_A Arginine/agmatine antip 3.9 1.5E+03 0.052 18.1 6.1 86 2-93 347-432 (445)
No 1
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=9.48 E-value=2.1e+02 Score=24.60 Aligned_cols=30 Identities=20% Similarity=0.718 Sum_probs=24.1
Q ss_pred HHHhcCcCCccchhHHHHHHHHHHHHHHHh
Q 029377 30 IIKHRSTEEFQSLPYICTLLNSSLWTYYGI 59 (194)
Q Consensus 30 i~k~kst~~~s~lp~~~~~~n~~lW~~YG~ 59 (194)
..|+|++-++-...+....+.+..|..+|+
T Consensus 30 ~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy 59 (399)
T 2b2h_A 30 MVRRKNAVNMIALSFISLIITVLLWIFYGY 59 (399)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred cccHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788777766677889999999999887
No 2
>2grg_A Hypothetical protein; YNR034W-AP; helix/beta strand protein, structural genomics, PSI, protein structure initiative; NMR {Saccharomyces cerevisiae} SCOP: d.110.10.1
Probab=6.19 E-value=40 Score=23.95 Aligned_cols=17 Identities=35% Similarity=0.726 Sum_probs=12.7
Q ss_pred HhHh-hHHhhhhhhHHHH
Q 029377 141 MYAS-PLSAMVPNGTGFL 157 (194)
Q Consensus 141 ~y~s-PL~~lvPN~~g~~ 157 (194)
|-+| ||..++||++|.+
T Consensus 23 m~ss~~L~ellP~alGtL 40 (120)
T 2grg_A 23 MKSSIPITEVLPRAVGSL 40 (120)
T ss_dssp CCCCEEHHHHHHHCSEEE
T ss_pred eccCccHHHhcCCceeEE
Confidence 4556 6888899988864
No 3
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=5.14 E-value=3.4e+02 Score=23.14 Aligned_cols=30 Identities=20% Similarity=0.394 Sum_probs=24.1
Q ss_pred HHHhcCcCCccchhHHHHHHHHHHHHHHHh
Q 029377 30 IIKHRSTEEFQSLPYICTLLNSSLWTYYGI 59 (194)
Q Consensus 30 i~k~kst~~~s~lp~~~~~~n~~lW~~YG~ 59 (194)
..|+|++-++-...+....+.+..|..+|+
T Consensus 35 ~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy 64 (385)
T 1u7g_A 35 LIRGKNVLSMLTQVTVTFALVCILWVVYGY 64 (385)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred cccHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777766677889999999999887
No 4
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=4.75 E-value=4.8e+02 Score=13.51 Aligned_cols=14 Identities=29% Similarity=0.717 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhcc
Q 029377 48 LLNSSLWTYYGITR 61 (194)
Q Consensus 48 ~~n~~lW~~YG~l~ 61 (194)
-+.+.+|+..|.+.
T Consensus 8 ~l~aa~wF~WGvll 21 (27)
T 2nr1_A 8 TLSSAMWFSWGVLL 21 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ehhhhHHHhhHhhe
Confidence 35677888888754
No 5
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=4.64 E-value=2.1e+02 Score=23.55 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=13.9
Q ss_pred hHHHHHHHHhH-hhHHhh-------hhhhHHHHH
Q 029377 133 MCAGLNIIMYA-SPLSAM-------VPNGTGFLL 158 (194)
Q Consensus 133 ~~~~~~i~~y~-sPL~~l-------vPN~~g~~l 158 (194)
.+..+....|+ .|+..+ ..|..|..+
T Consensus 273 lai~lA~~~F~~~p~~alp~~iy~~~q~i~~~~l 306 (332)
T 3zux_A 273 LAAALAAAHFAAAPVVAVPGALFSVWHNISGSLL 306 (332)
T ss_dssp HHHHHHHHHSTTCGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 55555555664 665553 455555543
No 6
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=4.30 E-value=4.5e+02 Score=22.05 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCcCCccchhHHHHHHHHH
Q 029377 24 VRTFWRIIKHRSTEEFQSLPYICTLLNSS 52 (194)
Q Consensus 24 l~~~~~i~k~kst~~~s~lp~~~~~~n~~ 52 (194)
+..+.+++++|+.++.-..-+.++++|+.
T Consensus 256 ~~~Lv~~L~~~~~~D~elq~~amtLIN~l 284 (339)
T 3dad_A 256 WANLVSILEEKNGADPELLVYTVTLINKT 284 (339)
T ss_dssp THHHHHHHTTTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 45555555555555554444555555544
No 7
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=4.16 E-value=5.2e+02 Score=13.07 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=11.1
Q ss_pred HhhHHHHHHHHHhcC
Q 029377 21 LAPVRTFWRIIKHRS 35 (194)
Q Consensus 21 ~SPl~~~~~i~k~ks 35 (194)
...+|.+..++|+|.
T Consensus 10 a~~LP~liSWiK~kr 24 (26)
T 3qrx_B 10 TTGLPALISWIKRKR 24 (26)
T ss_pred HccchHHHHHHHHHh
Confidence 356788888888774
No 8
>3d6r_B NS1, NS1A, non-structural protein 1; effector domain, alternative splicing, cytoplasm, HOST-virus interaction; 2.00A {Influenza a virus} PDB: 3oa9_A
Probab=4.13 E-value=2.3e+02 Score=20.58 Aligned_cols=20 Identities=40% Similarity=0.743 Sum_probs=16.4
Q ss_pred hhHHhh-------hhhhHHHHHhhhhh
Q 029377 144 SPLSAM-------VPNGTGFLLGTAQL 163 (194)
Q Consensus 144 sPL~~l-------vPN~~g~~l~~~Ql 163 (194)
|||-++ +-|++|++.|-.++
T Consensus 89 splpslPGHt~EdVKnAigvlIgGleW 115 (158)
T 3d6r_B 89 SPIPSMPGHSTEDVKNAIGILIGGLEW 115 (158)
T ss_dssp EECTTSCCCCHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCCchHHHHhhHhheecceeE
Confidence 677776 99999999998764
No 9
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=3.94 E-value=1.2e+02 Score=15.54 Aligned_cols=9 Identities=33% Similarity=0.475 Sum_probs=3.8
Q ss_pred EEeehhHHH
Q 029377 67 VATVNGFGI 75 (194)
Q Consensus 67 v~~~N~~G~ 75 (194)
++..|.+|.
T Consensus 6 v~aa~iiGi 14 (26)
T 3bkd_A 6 VVAASIMGI 14 (26)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 334444443
No 10
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=3.86 E-value=1.5e+03 Score=18.09 Aligned_cols=86 Identities=9% Similarity=0.097 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHHhccCCCeeEEeehhHHHHHHHHH
Q 029377 2 KDLSFYVGVIGNIISVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAVY 81 (194)
Q Consensus 2 ~~~~~~~g~~~~i~ti~~~~SPl~~~~~i~k~kst~~~s~lp~~~~~~n~~lW~~YG~l~~~~~~v~~~N~~G~~l~~~~ 81 (194)
++..+.+..+++......|..+.-...+.+|++. .-...-......-+.+...+.....++... ..|...-..-
T Consensus 347 ~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g 420 (445)
T 3l1l_A 347 TKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF--GKARPAYLAVTTIAFLYCIWAVVGSGAKEV----MWSFVTLMVI 420 (445)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS--GGGCTTTHHHHHHHHHHHHHHHHHSCHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc--ccccchhHHHHHHHHHHHHHHHHHcCHHHH----HHHHHHHHHH
Q ss_pred HHHHHhcccchh
Q 029377 82 VTLFFIYAPTKA 93 (194)
Q Consensus 82 l~~~~~y~~~~~ 93 (194)
+.+|+.+.++++
T Consensus 421 ~~~y~~~~~~~~ 432 (445)
T 3l1l_A 421 TAMYALNYNRLH 432 (445)
T ss_dssp HHHHHHHHSTTC
T ss_pred HHHHHHHhhhcc
Done!