Query 029377
Match_columns 194
No_of_seqs 175 out of 1173
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 19:35:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029377.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029377hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 14.5 1.9E+02 0.014 21.1 6.6 24 124-147 148-171 (447)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 13.6 77 0.0056 15.3 2.4 18 72-89 9-26 (30)
3 d2e9xd2 d.344.1.3 (D:166-223) 8.8 29 0.0021 20.2 -0.3 12 177-188 28-39 (58)
4 d1rkla_ f.23.30.1 (A:) Oligosa 7.4 31 0.0022 17.7 -0.6 20 152-171 8-27 (36)
5 d2grga1 d.110.10.1 (A:1-98) Un 6.5 26 0.0019 22.5 -1.4 14 144-157 5-18 (98)
6 d1rzhh2 f.23.10.1 (H:11-35) Ph 6.3 1.5E+02 0.011 13.8 1.8 10 50-59 4-13 (26)
7 d3buxb3 d.93.1.1 (B:264-351) C 4.4 1.1E+02 0.0078 18.8 0.6 13 166-178 73-85 (88)
8 d2croa_ a.35.1.2 (A:) cro 434 4.4 2.1E+02 0.015 15.6 2.0 35 24-58 30-64 (65)
9 d2axtm1 f.23.35.1 (M:1-36) Pho 3.7 2.6E+02 0.019 14.1 1.7 9 71-79 4-12 (36)
10 d1aqta2 b.93.1.1 (A:2-86) Epsi 3.6 1.3E+02 0.0094 18.0 0.5 10 183-192 32-41 (85)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=14.51 E-value=1.9e+02 Score=21.08 Aligned_cols=24 Identities=17% Similarity=0.066 Sum_probs=17.1
Q ss_pred ceeeeehhhhHHHHHHHHhHhhHH
Q 029377 124 EARIDAIGFMCAGLNIIMYASPLS 147 (194)
Q Consensus 124 ~~~~~~~G~~~~~~~i~~y~sPL~ 147 (194)
++|....|+.....++....+|+.
T Consensus 148 ~~r~~~~~~~~~~~~~g~~i~~~~ 171 (447)
T d1pw4a_ 148 KERGGIVSVWNCAHNVGGGIPPLL 171 (447)
T ss_dssp THHHHHHHHHHHHHHHHHTSHHHH
T ss_pred hcccccccccccccchhhhhhhhh
Confidence 567777888887777776666643
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=13.56 E-value=77 Score=15.30 Aligned_cols=18 Identities=17% Similarity=0.455 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHhcc
Q 029377 72 GFGILVEAVYVTLFFIYA 89 (194)
Q Consensus 72 ~~G~~l~~~~l~~~~~y~ 89 (194)
.+.+++++++..+|++-+
T Consensus 9 ifac~i~lfffaiffrep 26 (30)
T d2axtt1 9 IFACIIALFFFAIFFREP 26 (30)
T ss_dssp HHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 455666666666666543
No 3
>d2e9xd2 d.344.1.3 (D:166-223) GINS complex subunit 4, SLD5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.85 E-value=29 Score=20.21 Aligned_cols=12 Identities=33% Similarity=0.606 Sum_probs=8.8
Q ss_pred CccccccccCCC
Q 029377 177 NAANSMEEGAQH 188 (194)
Q Consensus 177 ~~~~~~~~~~~~ 188 (194)
++.-++|++|||
T Consensus 28 d~~iDle~GSQH 39 (58)
T d2e9xd2 28 DYVIDLEKGSQH 39 (58)
T ss_dssp CEEEEECTTCEE
T ss_pred ceeEecccCcee
Confidence 335678889998
No 4
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.36 E-value=31 Score=17.69 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=16.3
Q ss_pred hhHHHHHhhhhhheeEEEcC
Q 029377 152 NGTGFLLGTAQLVLYAIYRN 171 (194)
Q Consensus 152 N~~g~~l~~~Ql~L~~iYp~ 171 (194)
|.+...+|+.-+.|..+|.-
T Consensus 8 n~~~i~fgi~mmtliviyh~ 27 (36)
T d1rkla_ 8 NSLAITFGIVMMTLIVIYHA 27 (36)
T ss_dssp GHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEeehhHHHHHHHHHHhh
Confidence 77788888888888888864
No 5
>d2grga1 d.110.10.1 (A:1-98) Uncharacterized protein YNR034W-A {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.54 E-value=26 Score=22.48 Aligned_cols=14 Identities=29% Similarity=0.707 Sum_probs=8.6
Q ss_pred hhHHhhhhhhHHHH
Q 029377 144 SPLSAMVPNGTGFL 157 (194)
Q Consensus 144 sPL~~lvPN~~g~~ 157 (194)
.||..++||++|.+
T Consensus 5 ~~L~el~p~aiGtl 18 (98)
T d2grga1 5 IPITEVLPRAVGSL 18 (98)
T ss_dssp EEHHHHHHHCSEEE
T ss_pred ccHHHhcCCceeEE
Confidence 35666677776643
No 6
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.28 E-value=1.5e+02 Score=13.82 Aligned_cols=10 Identities=0% Similarity=0.467 Sum_probs=5.0
Q ss_pred HHHHHHHHHh
Q 029377 50 NSSLWTYYGI 59 (194)
Q Consensus 50 n~~lW~~YG~ 59 (194)
+...|+.++.
T Consensus 4 slaiw~fw~f 13 (26)
T d1rzhh2 4 SLAIYSFWIF 13 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3445555554
No 7
>d3buxb3 d.93.1.1 (B:264-351) Cbl {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.41 E-value=1.1e+02 Score=18.77 Aligned_cols=13 Identities=0% Similarity=0.365 Sum_probs=8.7
Q ss_pred eEEEcCCCCCCCc
Q 029377 166 YAIYRNAKPSKNA 178 (194)
Q Consensus 166 ~~iYp~~~~~~~~ 178 (194)
|++||++++..|+
T Consensus 73 fylyPdG~~~npd 85 (88)
T d3buxb3 73 FYLFPDGRNQNPD 85 (88)
T ss_dssp SSCEETTCSCCCC
T ss_pred eEECCCCCCCCCC
Confidence 4677877766554
No 8
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=4.41 E-value=2.1e+02 Score=15.58 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHH
Q 029377 24 VRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYG 58 (194)
Q Consensus 24 l~~~~~i~k~kst~~~s~lp~~~~~~n~~lW~~YG 58 (194)
-.++.++.+.++...-...-+.-.+-...-|+++|
T Consensus 30 ~~ti~~~E~g~~~~~~~l~~ia~~l~v~~~~Ll~G 64 (65)
T d2croa_ 30 QQSIQLIEAGVTKRPRFLFEIAMALNCDPVWLQYG 64 (65)
T ss_dssp HHHHHHHHTTCCSSCTTHHHHHHHTTSCHHHHHHC
T ss_pred HhHHHHHHCCCCCCHHHHHHHHHHhCCCHHHHhhC
Confidence 45666766655533211222233333445677776
No 9
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.74 E-value=2.6e+02 Score=14.15 Aligned_cols=9 Identities=33% Similarity=0.719 Sum_probs=4.0
Q ss_pred hhHHHHHHH
Q 029377 71 NGFGILVEA 79 (194)
Q Consensus 71 N~~G~~l~~ 79 (194)
|..|++...
T Consensus 4 N~Lg~iAt~ 12 (36)
T d2axtm1 4 NQLGLIATA 12 (36)
T ss_dssp CTTHHHHHH
T ss_pred hHHHHHHHH
Confidence 444444443
No 10
>d1aqta2 b.93.1.1 (A:2-86) Epsilon subunit of F1F0-ATP synthase N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.60 E-value=1.3e+02 Score=18.01 Aligned_cols=10 Identities=30% Similarity=0.408 Sum_probs=7.9
Q ss_pred cccCCCCCCC
Q 029377 183 EEGAQHEPLI 192 (194)
Q Consensus 183 ~~~~~~~~~~ 192 (194)
+-+++|+|+|
T Consensus 32 gIL~~H~p~i 41 (85)
T d1aqta2 32 GIYPGHAPLL 41 (85)
T ss_dssp EECTTCCCEE
T ss_pred EEcCCCccee
Confidence 3489999986
Done!