Query 029378
Match_columns 194
No_of_seqs 109 out of 239
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 19:37:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029378.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029378hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dlca3 f.1.3.1 (A:61-289) del 27.4 55 0.004 24.8 5.8 46 123-168 7-60 (229)
2 d1xmea1 f.24.1.1 (A:14-562) Ba 22.3 23 0.0016 31.0 2.8 58 67-124 467-524 (549)
3 d1veha_ d.52.8.1 (A:) HIRA-int 14.7 30 0.0022 23.5 1.4 19 153-172 61-79 (92)
4 d1u84a_ a.230.1.1 (A:) hypothe 11.1 59 0.0043 21.9 2.0 23 156-179 3-25 (81)
5 d1k8ia2 d.19.1.1 (A:11-92) Cla 9.4 38 0.0028 23.0 0.5 14 106-119 38-51 (82)
6 d1eysh2 f.23.10.1 (H:7-43) Pho 9.1 92 0.0067 18.1 2.1 22 39-61 12-33 (37)
7 d1hdma2 d.19.1.1 (A:13-93) Cla 9.0 36 0.0026 23.1 0.2 14 106-119 39-52 (81)
8 d1b77a1 d.131.1.2 (A:1-110) gp 7.6 29 0.0021 24.4 -0.8 22 68-89 52-74 (110)
9 d2q07a3 d.17.6.5 (A:394-459) U 7.5 64 0.0047 20.5 0.9 14 157-170 5-18 (66)
10 d1zeea1 a.266.1.2 (A:6-392) Hy 7.0 4.2E+02 0.03 22.1 6.3 83 101-188 132-235 (387)
No 1
>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]}
Probab=27.43 E-value=55 Score=24.82 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHH--------HHHHHHHHHhhhc
Q 029378 123 AFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVL--------TMRRQIAHMIKYR 168 (194)
Q Consensus 123 a~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~l--------Tm~rqI~HMiKyr 168 (194)
.+.++++.+...++.+|+--+++-++..++=.+ .|.+|++.||..+
T Consensus 7 ~~~~~i~~~il~~~~~P~~g~~~~~~~~i~~~lwP~~~~w~~~~~~ve~lId~~ 60 (229)
T d1dlca3 7 QKGISVVGDLLGVVGFPFGGALVSFYTNFLNTIWPSEDPWKAFMEQVEALMDQK 60 (229)
T ss_dssp HHHHHHHHHHTTSCBSCCHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 356777777777778888777665443333222 6888999998765
No 2
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=22.28 E-value=23 Score=31.01 Aligned_cols=58 Identities=19% Similarity=0.383 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHhhcCCCCCccccccCCCCCCCCCCCCCCCcccCCchhHHHHHHHHHH
Q 029378 67 GLGIYLLNLLIGFLSPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAF 124 (194)
Q Consensus 67 ~LgIylLnlfi~FLtPk~Dp~l~~eeg~~lp~~~~~EFrPFiRRLPEFkFW~~~tra~ 124 (194)
+..+++.|++-...+.+..|+..++.-+......+.|=.+=.+.||+.|+|.-..-+.
T Consensus 467 g~l~f~~nl~~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~w~~~~~~l 524 (549)
T d1xmea1 467 ALLLFIYGLFSVLLSRERKPELAEAPLPFAEVISGPEDRRLVLAMDRIGFWFAVAAIL 524 (549)
T ss_dssp HHHHHHHHHHHHHTCCCCCHHHHSSCCCCCCBCCCSSHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCCCCCCCCcccCCccHHHHHHHHHH
Confidence 4567888888888887776654322122222222222223345799999997654443
No 3
>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.71 E-value=30 Score=23.50 Aligned_cols=19 Identities=32% Similarity=0.773 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhhhccccC
Q 029378 153 FVLTMRRQIAHMIKYRYIPF 172 (194)
Q Consensus 153 f~lTm~rqI~HMiKyrYvPf 172 (194)
-..|+|..|++|+|+ ++|-
T Consensus 61 s~~Tlk~~Ie~~L~~-~vpe 79 (92)
T d1veha_ 61 SIITLKSGIQNMLQF-YIPE 79 (92)
T ss_dssp HHHHTHHHHHHHHHH-HCSS
T ss_pred HHHHHHHHHHHHHHH-HCCC
Confidence 457999999999998 5684
No 4
>d1u84a_ a.230.1.1 (A:) hypothetical protein YugE {Bacillus stearothermophilus [TaxId: 1422]}
Probab=11.14 E-value=59 Score=21.94 Aligned_cols=23 Identities=30% Similarity=0.663 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhccccCCcCcccc
Q 029378 156 TMRRQIAHMIKYRYIPFNIGKQKY 179 (194)
Q Consensus 156 Tm~rqI~HMiKyrYvPf~~gK~~y 179 (194)
-|.+++-|+|| .+-||-.|...|
T Consensus 3 ~~n~~m~~~i~-~WDPF~~G~d~Y 25 (81)
T d1u84a_ 3 QLNRLLLEWIG-AWDPFGLGKDAY 25 (81)
T ss_dssp HHHHHHHHHHH-HHCTTSSCGGGG
T ss_pred HHHHHHHHHHH-ccCCcccCccch
Confidence 37888889988 689999999988
No 5
>d1k8ia2 d.19.1.1 (A:11-92) Class II MHC alpha chain, N-terminal domain {Mouse (Mus musculus), H2-DM [TaxId: 10090]}
Probab=9.38 E-value=38 Score=23.00 Aligned_cols=14 Identities=36% Similarity=0.785 Sum_probs=11.4
Q ss_pred CcccCCchhHHHHH
Q 029378 106 PFIRRLPEFKFWYS 119 (194)
Q Consensus 106 PFiRRLPEFkFW~~ 119 (194)
--+.|||||.=|-.
T Consensus 38 ~rvPrLPefa~Wa~ 51 (82)
T d1k8ia2 38 TRVPRLPDFAEWAQ 51 (82)
T ss_dssp EEEESSTTTTHHHH
T ss_pred ccccCCCccccccc
Confidence 34779999999975
No 6
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=9.09 E-value=92 Score=18.07 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHhhheeccE
Q 029378 39 YRWIGTLVILAIYCLRVFYVQGF 61 (194)
Q Consensus 39 ~RW~~~~~L~~lf~~Rv~~~~g~ 61 (194)
.=|+++++|++ |+-|=-..+||
T Consensus 12 ~Fw~FFagLi~-YL~rE~~REGy 33 (37)
T d1eysh2 12 AFWLFFFGLII-YLRREDKREGY 33 (37)
T ss_dssp HHHHHHHHHHH-HHHHHTTSSSC
T ss_pred HHHHHHHHHHH-HHHhcccccCC
Confidence 45776666544 66665555554
No 7
>d1hdma2 d.19.1.1 (A:13-93) Class II MHC alpha chain, N-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}
Probab=9.04 E-value=36 Score=23.06 Aligned_cols=14 Identities=43% Similarity=0.793 Sum_probs=11.1
Q ss_pred CcccCCchhHHHHH
Q 029378 106 PFIRRLPEFKFWYS 119 (194)
Q Consensus 106 PFiRRLPEFkFW~~ 119 (194)
--+.|||||.=|-.
T Consensus 39 ~rvPrLPefa~Wa~ 52 (81)
T d1hdma2 39 TRVPRLPEFADWAQ 52 (81)
T ss_dssp EEEESSGGGGGGTT
T ss_pred ccccCCCccccchh
Confidence 34779999999963
No 8
>d1b77a1 d.131.1.2 (A:1-110) gp45 sliding clamp {Bacteriophage RB69 [TaxId: 12353]}
Probab=7.60 E-value=29 Score=24.40 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhcCCC-CCcccc
Q 029378 68 LGIYLLNLLIGFLSPL-VDPEIE 89 (194)
Q Consensus 68 LgIylLnlfi~FLtPk-~Dp~l~ 89 (194)
.|||=||.||+-|+=. -||+++
T Consensus 52 faIYDL~eFL~~lsL~~~~p~l~ 74 (110)
T d1b77a1 52 VALYDLNSFLSILSLVSDDAEIS 74 (110)
T ss_dssp EEESCHHHHHHHHTTSCTTCEEE
T ss_pred eeeeeHHHHHhHHhhccCCCccc
Confidence 5899999999999865 478776
No 9
>d2q07a3 d.17.6.5 (A:394-459) Uncharacterized protein AF0587 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=7.46 E-value=64 Score=20.47 Aligned_cols=14 Identities=36% Similarity=0.790 Sum_probs=11.6
Q ss_pred HHHHHHHHhhhccc
Q 029378 157 MRRQIAHMIKYRYI 170 (194)
Q Consensus 157 m~rqI~HMiKyrYv 170 (194)
-||...||..|.+=
T Consensus 5 yrrilehmlsyqfg 18 (66)
T d2q07a3 5 YRRILEHMLSYQFG 18 (66)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhhc
Confidence 38889999999873
No 10
>d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella oneidensis [TaxId: 70863]}
Probab=6.97 E-value=4.2e+02 Score=22.05 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=0.0
Q ss_pred CCCCCCcccCCchhHHHHHHHHHHHHHHHHH--hcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhc----------
Q 029378 101 SDEFKPFIRRLPEFKFWYSMTKAFCIAFVMT--FFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYR---------- 168 (194)
Q Consensus 101 ~~EFrPFiRRLPEFkFW~~~tra~~ia~~~T--ff~~fDiPVfWPiLl~Yfi~Lf~lTm~rqI~HMiKyr---------- 168 (194)
++-+|.|..=.-|.-|=-+-||.+.-..=+. ..++.|+|+==|+-.=-...+ |..++-|++..
T Consensus 132 ~~~~k~ft~l~de~~f~~~nt~~~~a~~~a~~~l~~~~~lgi~hp~~~~ll~~~-----~~aLq~v~~sn~~l~~~ld~~ 206 (387)
T d1zeea1 132 NGIYKRFTDLPDEKLFVDYNTKGILAYKRASDALLKIQPLGISHPISHDLLRVT-----KQALQDVIESNQQLFNRLDTD 206 (387)
T ss_dssp TTEECCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCTTSHHHHHHHHHH-----HHHHHHHHHHHHHHHTTSCHH
T ss_pred hhhHhhccCCchHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHH-----HHHHHHHHHHHHHHHHhcCHH
Q ss_pred ---------cccCCcCccccCCCCCCCCC
Q 029378 169 ---------YIPFNIGKQKYGGKKPSSSG 188 (194)
Q Consensus 169 ---------YvPf~~gK~~y~~~~~~~~~ 188 (194)
|=|+..|++.|.|.+.+..+
T Consensus 207 ~Ff~~vRPyykP~rVG~q~YrG~sAgqsa 235 (387)
T d1zeea1 207 RFFYCVRPYYKPYRVGSVVYRGANAGDFA 235 (387)
T ss_dssp HHHHHTGGGGCCEEETTEEECCCCTTCSH
T ss_pred HHHHHhhhhcchhhcCCeeeCCCChhhcc
Done!