BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029379
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ONI|A Chain A, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|B Chain B, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|C Chain C, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|D Chain D, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|E Chain E, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|F Chain F, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|G Chain G, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|H Chain H, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|I Chain I, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
Length = 138
Score = 144 bits (363), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 94/127 (74%), Gaps = 4/127 (3%)
Query: 63 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLK 122
++ + T KAP A+GPYSQA+ + +++SG +G+ P S G+ VS + ++ +Q LK
Sbjct: 6 IRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSS----GQLVSGGVAEEAKQALK 61
Query: 123 NIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDAR 182
N+GEILKA+G D+++VVKTT+LLAD+ DF TVNEIY +YF S PARA YQVAALP +R
Sbjct: 62 NMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSR 121
Query: 183 VEIECIA 189
+EIE +A
Sbjct: 122 IEIEAVA 128
>pdb|1QAH|A Chain A, Crystal Structure Of Perchloric Acid Soluble Protein-A
Translational Inhibitor
pdb|1QAH|B Chain B, Crystal Structure Of Perchloric Acid Soluble Protein-A
Translational Inhibitor
Length = 136
Score = 139 bits (351), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 94/129 (72%), Gaps = 4/129 (3%)
Query: 61 SNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQV 120
S +++ + T+KAPAA+G YSQA+ + ++VSG +G+ P S G+ V + ++ +Q
Sbjct: 2 SIIRKVISTSKAPAAIGAYSQAVLVDRTIYVSGQIGMDPSS----GQLVPGGVAEEAKQA 57
Query: 121 LKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLD 180
LKN+GEILKA+G D+++VVKTT+LLAD+ DF TVNEIY YF PARA YQVAALP
Sbjct: 58 LKNLGEILKAAGCDFTNVVKTTVLLADINDFGTVNEIYKTYFQGNLPARAAYQVAALPKG 117
Query: 181 ARVEIECIA 189
+R+EIE IA
Sbjct: 118 SRIEIEAIA 126
>pdb|1NQ3|A Chain A, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|B Chain B, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|C Chain C, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|D Chain D, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|E Chain E, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|F Chain F, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
Length = 136
Score = 136 bits (342), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 91/129 (70%), Gaps = 4/129 (3%)
Query: 61 SNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQV 120
S ++ + T KAPAA+GPYSQA+ + +++SG LG+ P S G+ V + ++ +Q
Sbjct: 2 SLVRRIISTAKAPAAIGPYSQAVLVDRTIYISGQLGMDPAS----GQLVPGGVVEEAKQA 57
Query: 121 LKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLD 180
L NIGEILKA+G D+++VVK T+LLAD+ DF VN++Y +YF S PARA YQVAALP
Sbjct: 58 LTNIGEILKAAGCDFTNVVKATVLLADINDFSAVNDVYKQYFQSSFPARAAYQVAALPKG 117
Query: 181 ARVEIECIA 189
RVEIE IA
Sbjct: 118 GRVEIEAIA 126
>pdb|2CSL|A Chain A, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|B Chain B, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|C Chain C, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|D Chain D, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|E Chain E, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|F Chain F, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|A Chain A, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|B Chain B, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|C Chain C, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|D Chain D, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|E Chain E, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|F Chain F, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CW4|A Chain A, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
Length = 124
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 84/125 (67%), Gaps = 5/125 (4%)
Query: 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNI 124
EAV T++APAA+GPY+QA+KA VFVSG + L P+ G V I QTE+V +N+
Sbjct: 2 EAVKTDRAPAAIGPYAQAVKAGGFVFVSGQIPLAPD-----GSLVEGDIRVQTERVXENL 56
Query: 125 GEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVE 184
+L+A+G+ S VV+TT LAD +DF NE+YA+YF P PARAT V ALP RVE
Sbjct: 57 KAVLEAAGSGLSRVVQTTCFLADXEDFPGFNEVYARYFTPPYPARATVAVKALPRGVRVE 116
Query: 185 IECIA 189
+ C+A
Sbjct: 117 VACVA 121
>pdb|3L7Q|A Chain A, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|B Chain B, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|C Chain C, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|D Chain D, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|E Chain E, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|F Chain F, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|G Chain G, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|H Chain H, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|I Chain I, Crystal Structure Of Aldr From Streptococcus Mutans
Length = 125
Score = 123 bits (308), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 81/123 (65%), Gaps = 4/123 (3%)
Query: 69 TNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEIL 128
T+KAPAA+GPY Q NL+F SG + L PE TG+ + TIE+QT+QVLKNI IL
Sbjct: 6 TDKAPAAIGPYVQGKIVGNLLFASGQVPLSPE----TGQVIGTTIEEQTQQVLKNISAIL 61
Query: 129 KASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECI 188
+G D+ VVKTT L+D+ DF NE+YA F S PAR+ +VA LP D ++EIE I
Sbjct: 62 TEAGTDFDHVVKTTCFLSDIDDFVPFNEVYATAFKSDFPARSAVEVARLPKDVKIEIEVI 121
Query: 189 AAL 191
A L
Sbjct: 122 AEL 124
>pdb|2DYY|A Chain A, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|B Chain B, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|C Chain C, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|D Chain D, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|E Chain E, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|F Chain F, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|G Chain G, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|H Chain H, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|I Chain I, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|J Chain J, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|K Chain K, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|L Chain L, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
Length = 126
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 83/127 (65%), Gaps = 4/127 (3%)
Query: 63 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLK 122
+KE + T AP +GPYSQAIKA N +F++G + + P +TG+ V I+DQT QVL+
Sbjct: 1 MKEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDP----KTGEIVKGDIKDQTRQVLE 56
Query: 123 NIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDAR 182
NI IL+A+G + V+K T+ L D+ DF +NE+YA+YF PAR +V+ LP D
Sbjct: 57 NIKAILEAAGYSLNDVIKVTVYLKDMNDFAKMNEVYAEYFGESKPARVAVEVSRLPKDVL 116
Query: 183 VEIECIA 189
+EIE IA
Sbjct: 117 IEIEAIA 123
>pdb|1QD9|A Chain A, Bacillus Subtilis Yabj
pdb|1QD9|B Chain B, Bacillus Subtilis Yabj
pdb|1QD9|C Chain C, Bacillus Subtilis Yabj
Length = 124
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 83/125 (66%), Gaps = 5/125 (4%)
Query: 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNI 124
+AV T APAA+GPYSQ I NN+ + SG + L P +G+ V+ I++QT QV N+
Sbjct: 2 KAVHTKHAPAAIGPYSQGIIVNNMFYSSGQIPLTP-----SGEMVNGDIKEQTHQVFSNL 56
Query: 125 GEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVE 184
+L+ +GA + +VVK T+ +AD++ F VNE+Y +YF + PAR+ +VA LP DA VE
Sbjct: 57 KAVLEEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDTHKPARSCVEVARLPKDALVE 116
Query: 185 IECIA 189
IE IA
Sbjct: 117 IEVIA 121
>pdb|1XRG|A Chain A, Conserved Hypothetical Protein From Clostridium
Thermocellum Cth-2968
pdb|1XRG|B Chain B, Conserved Hypothetical Protein From Clostridium
Thermocellum Cth-2968
pdb|1XRG|C Chain C, Conserved Hypothetical Protein From Clostridium
Thermocellum Cth-2968
Length = 156
Score = 117 bits (292), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 82/125 (65%), Gaps = 4/125 (3%)
Query: 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNI 124
E V TNKAP A+GPYSQAI + V+ SG + + P QTG+ V IE+Q +QVL+N+
Sbjct: 34 EVVKTNKAPEAIGPYSQAIVTGSFVYTSGQIPINP----QTGEVVDGGIEEQAKQVLENL 89
Query: 125 GEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVE 184
+L+A+G+ + VVKTT+ + D F VNE+YAKYF P PAR+ +V+ LP +E
Sbjct: 90 KNVLEAAGSSLNKVVKTTVFIKDXDSFAKVNEVYAKYFSEPYPARSCVEVSKLPKGVLIE 149
Query: 185 IECIA 189
IE +A
Sbjct: 150 IEAVA 154
>pdb|2B33|A Chain A, Crystal Structure Of A Putative Endoribonuclease (tm0215)
From Thermotoga Maritima Msb8 At 2.30 A Resolution
pdb|2B33|B Chain B, Crystal Structure Of A Putative Endoribonuclease (tm0215)
From Thermotoga Maritima Msb8 At 2.30 A Resolution
Length = 140
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 82/127 (64%), Gaps = 4/127 (3%)
Query: 63 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLK 122
+K V T+KAP A+GPYSQA+ N++FVSG + + PE TG+ V TIE++TE+VL+
Sbjct: 13 MKRFVETDKAPKAIGPYSQAVVVGNMMFVSGQIPIDPE----TGELVQGTIEEKTERVLE 68
Query: 123 NIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDAR 182
N+ IL+A G VVK T+ + F+ VNE+Y++YF PAR+ VA LP +
Sbjct: 69 NLKAILEAGGFSLKDVVKVTVFTTSMDYFQRVNEVYSRYFGDHRPARSFVAVAQLPRNVE 128
Query: 183 VEIECIA 189
+EIE IA
Sbjct: 129 IEIEAIA 135
>pdb|3M4S|A Chain A, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|B Chain B, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|C Chain C, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|D Chain D, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|E Chain E, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|F Chain F, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
Length = 148
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 79/120 (65%), Gaps = 4/120 (3%)
Query: 72 APAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKAS 131
AP A+G YSQAI N +V+ SG +GL +TG F TIE+Q++QV+ N+ +L+ +
Sbjct: 33 APEAVGAYSQAIICNGMVYCSGQIGL----DRKTGDFAGKTIEEQSKQVMTNLKYVLEEA 88
Query: 132 GADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 191
G+ VVKTT LLAD+KDF N IYA+ F + PARA + AALP A VE+ECIA L
Sbjct: 89 GSSMDKVVKTTCLLADIKDFGVFNGIYAEAFGNHKPARACFAAAALPKGALVEVECIATL 148
>pdb|3MQW|A Chain A, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|B Chain B, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|C Chain C, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|D Chain D, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|E Chain E, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|F Chain F, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
Length = 148
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 79/120 (65%), Gaps = 4/120 (3%)
Query: 72 APAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKAS 131
AP A+G YSQAI N +V+ SG +GL +TG F TIE+Q++QV+ N+ +L+ +
Sbjct: 33 APEAVGAYSQAIICNGMVYCSGQIGL----DRKTGDFAGKTIEEQSKQVMTNLKYVLEEA 88
Query: 132 GADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 191
G+ VVKTT LLAD+KDF N IYA+ F + PARA + AALP A VE+ECIA L
Sbjct: 89 GSSMDKVVKTTCLLADIKDFGVFNGIYAEAFGNHKPARACFAAAALPKGALVEVECIATL 148
>pdb|3K0T|A Chain A, Crystal Structure Of Pspto -Psp Protein In Complex With
D-Be From Pseudomonas Syringae Pv. Tomato Str. Dc3000
pdb|3K0T|B Chain B, Crystal Structure Of Pspto -Psp Protein In Complex With
D-Be From Pseudomonas Syringae Pv. Tomato Str. Dc3000
pdb|3K0T|C Chain C, Crystal Structure Of Pspto -Psp Protein In Complex With
D-Be From Pseudomonas Syringae Pv. Tomato Str. Dc3000
Length = 143
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 75/125 (60%), Gaps = 5/125 (4%)
Query: 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKN 123
K + ++KAPAA+GPYSQAIKA N V+ SG + L P T + V + IE Q QV +N
Sbjct: 20 KTVITSDKAPAAIGPYSQAIKAGNTVYXSGQIPLDP----STXELV-EGIEAQITQVFEN 74
Query: 124 IGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARV 183
+ + +A+G + +VK I L DL F VNEI YF P PARA VAALP A+V
Sbjct: 75 LKSVAQAAGGSFKDIVKLNIFLTDLGHFAKVNEIXGSYFSQPYPARAAIGVAALPRGAQV 134
Query: 184 EIECI 188
E + I
Sbjct: 135 EXDAI 139
>pdb|1X25|A Chain A, Crystal Structure Of A Member Of Yjgf Family From
Sulfolobus Tokodaii (st0811)
pdb|1X25|B Chain B, Crystal Structure Of A Member Of Yjgf Family From
Sulfolobus Tokodaii (st0811)
Length = 128
Score = 102 bits (255), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNI 124
E V T KAP +GPYSQAIK N ++VSG + + P +T + V I+ QT QVL NI
Sbjct: 5 ETVFTEKAPKPVGPYSQAIKVGNTLYVSGQIPIDP----RTNEIVKGDIKVQTRQVLDNI 60
Query: 125 GEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVE 184
EI+KA+G S V + L D+ F N +YA+YF PAR T +V+ LP DA +E
Sbjct: 61 KEIVKAAGFSLSDVAMAFVFLKDMNMFNDFNSVYAEYFKDKPPARVTVEVSRLPKDALIE 120
Query: 185 IECI 188
I I
Sbjct: 121 IAVI 124
>pdb|3M1X|A Chain A, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Rhomobohedral Form
Length = 148
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 78/120 (65%), Gaps = 4/120 (3%)
Query: 72 APAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKAS 131
AP A+G YSQAI N V+ SG +GL +TG F TIE+Q++QV+ N+ +L+ +
Sbjct: 33 APEAVGAYSQAIICNGXVYCSGQIGL----DRKTGDFAGKTIEEQSKQVMTNLKYVLEEA 88
Query: 132 GADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 191
G+ VVKTT LLAD+KDF N IYA+ F + PARA + AALP A VE+ECIA L
Sbjct: 89 GSSMDKVVKTTCLLADIKDFGVFNGIYAEAFGNHKPARACFAAAALPKGALVEVECIATL 148
>pdb|3QUW|A Chain A, Crystal Structure Of Yeast Mmf1
Length = 153
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 77/127 (60%), Gaps = 5/127 (3%)
Query: 67 VVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGE 126
V T AP A YSQA+KANN V+VSG + P++ K V +I ++ EQV +N+
Sbjct: 32 VSTKLAPPAAASYSQAMKANNFVYVSGQIPYTPDN-----KPVQGSISEKAEQVFQNVKN 86
Query: 127 ILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIE 186
IL S + ++VK + LAD+K+F N +YAK+F + PAR+ VA+LPL+ +E+E
Sbjct: 87 ILAESNSSLDNIVKVNVFLADMKNFAEFNSVYAKHFHTHKPARSCVGVASLPLNVDLEME 146
Query: 187 CIAALPN 193
IA N
Sbjct: 147 VIAVEKN 153
>pdb|2UYJ|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound Ethylene
Glycol
pdb|2UYJ|B Chain B, Crystal Structure Of E. Coli Tdcf With Bound Ethylene
Glycol
pdb|2UYJ|C Chain C, Crystal Structure Of E. Coli Tdcf With Bound Ethylene
Glycol
pdb|2UYN|B Chain B, Crystal Structure Of E. Coli Tdcf With Bound
2-Ketobutyrate
pdb|2UYN|C Chain C, Crystal Structure Of E. Coli Tdcf With Bound
2-Ketobutyrate
pdb|2UYP|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound Propionate
pdb|2UYP|B Chain B, Crystal Structure Of E. Coli Tdcf With Bound Propionate
pdb|2UYP|C Chain C, Crystal Structure Of E. Coli Tdcf With Bound Propionate
pdb|2UYK|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound Serine
pdb|2UYK|B Chain B, Crystal Structure Of E. Coli Tdcf With Bound Serine
pdb|2UYK|C Chain C, Crystal Structure Of E. Coli Tdcf With Bound Serine
Length = 129
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 78/130 (60%), Gaps = 8/130 (6%)
Query: 63 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLK 122
+K+ + T +AP A+GPY Q + ++VF SG + + P QTG+ +D ++DQ L+
Sbjct: 1 MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVXP----QTGEIPAD-VQDQARLSLE 55
Query: 123 NIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPA---PARATYQVAALPL 179
N+ I+ A+G ++K T+ + DL DF T+NE+Y ++F P R+ QVA LP
Sbjct: 56 NVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLPK 115
Query: 180 DARVEIECIA 189
D ++EIE IA
Sbjct: 116 DVKLEIEAIA 125
>pdb|2UYN|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound
2-Ketobutyrate
Length = 129
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 78/130 (60%), Gaps = 8/130 (6%)
Query: 63 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLK 122
+K+ + T +AP A+GPY Q + ++VF SG + + P QTG+ +D ++DQ L+
Sbjct: 1 MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVXP----QTGEIPAD-VQDQARLSLE 55
Query: 123 NIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPA---PARATYQVAALPL 179
N+ I+ A+G ++K T+ + DL DF T+NE+Y ++F P R+ QVA LP
Sbjct: 56 NVXAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLPK 115
Query: 180 DARVEIECIA 189
D ++EIE IA
Sbjct: 116 DVKLEIEAIA 125
>pdb|1JD1|A Chain A, Crystal Structure Of Yeo7_yeast
pdb|1JD1|B Chain B, Crystal Structure Of Yeo7_yeast
pdb|1JD1|C Chain C, Crystal Structure Of Yeo7_yeast
pdb|1JD1|D Chain D, Crystal Structure Of Yeo7_yeast
pdb|1JD1|E Chain E, Crystal Structure Of Yeo7_yeast
pdb|1JD1|F Chain F, Crystal Structure Of Yeo7_yeast
Length = 129
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 68/108 (62%), Gaps = 5/108 (4%)
Query: 83 IKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTT 142
+K NNL+F+SG + + P++ K V +I D+ EQV++NI +L+AS + VVK
Sbjct: 24 MKVNNLIFLSGQIPVTPDN-----KLVEGSIADKAEQVIQNIKNVLEASNSSLDRVVKVN 78
Query: 143 ILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAA 190
I LAD+ F N +YAKYF + PAR+ VAALPL +E+E IAA
Sbjct: 79 IFLADINHFAEFNSVYAKYFNTHKPARSCVAVAALPLGVDMEMEAIAA 126
>pdb|3VCZ|A Chain A, 1.80 Angstrom Resolution Crystal Structure Of A Putative
Translation Initiation Inhibitor From Vibrio Vulnificus
Cmcp6
pdb|3VCZ|B Chain B, 1.80 Angstrom Resolution Crystal Structure Of A Putative
Translation Initiation Inhibitor From Vibrio Vulnificus
Cmcp6
pdb|3VCZ|C Chain C, 1.80 Angstrom Resolution Crystal Structure Of A Putative
Translation Initiation Inhibitor From Vibrio Vulnificus
Cmcp6
Length = 153
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 73/125 (58%), Gaps = 9/125 (7%)
Query: 69 TNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEIL 128
T+ APAA+GPY Q + N+V SG +P +P TG+ +D I Q Q L N+ ++
Sbjct: 31 TDSAPAAIGPYIQGVDLGNMVLTSG---QIPVNP-ATGEVPAD-IAAQARQSLDNVKAVV 85
Query: 129 KASGADYSSVVKTTILLADLKDFKTVNEIYAKYFP----SPAPARATYQVAALPLDARVE 184
+ASG +VK T+ + DL DF TVNE+Y +F + PAR+ +VA LP D +E
Sbjct: 86 EASGLTVGDIVKMTVFVKDLNDFGTVNEVYGNFFDEHNVAHYPARSCVEVARLPKDVGIE 145
Query: 185 IECIA 189
IE IA
Sbjct: 146 IEAIA 150
>pdb|1QU9|A Chain A, 1.2 A Crystal Structure Of Yjgf Gene Product From E. Coli
pdb|1QU9|B Chain B, 1.2 A Crystal Structure Of Yjgf Gene Product From E. Coli
pdb|1QU9|C Chain C, 1.2 A Crystal Structure Of Yjgf Gene Product From E. Coli
Length = 128
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 75/130 (57%), Gaps = 8/130 (6%)
Query: 63 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLK 122
+ + + T APAA+GPY Q + N++ SG +P +P +TG+ +D + Q Q L
Sbjct: 1 MSKTIATENAPAAIGPYVQGVDLGNMIITSG---QIPVNP-KTGEVPAD-VAAQARQSLD 55
Query: 123 NIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPA---PARATYQVAALPL 179
N+ I++A+G +VKTT+ + DL DF TVN Y +F PAR+ +VA LP
Sbjct: 56 NVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARSXVEVARLPK 115
Query: 180 DARVEIECIA 189
D ++EIE IA
Sbjct: 116 DVKIEIEAIA 125
>pdb|2CWJ|A Chain A, Crystal Structure Of Ape1501, A Putative Endonuclease From
Aeropyrum Pernix
Length = 123
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 68/117 (58%), Gaps = 4/117 (3%)
Query: 72 APAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKAS 131
AP +GPYSQA+++ +FVSG + + PE TG ++ ++ L N+ I++ +
Sbjct: 4 APKPVGPYSQAVESGCFMFVSGQIPINPE----TGALEEGGFKESAKRALDNLKAIVEGA 59
Query: 132 GADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECI 188
G +VK T+ + D+ F NE+Y +YF P PARA VAALPL A +E+E +
Sbjct: 60 GYSMDDIVKVTVYITDISRFSEFNEVYREYFNRPYPARAVVGVAALPLGAPLEVEAV 116
>pdb|3R0P|A Chain A, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|B Chain B, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|C Chain C, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|D Chain D, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|E Chain E, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|F Chain F, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
Length = 127
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 71/128 (55%), Gaps = 4/128 (3%)
Query: 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKN 123
K + ++ APAA+G YSQA+K NN V++SG + L P T + V Q QV KN
Sbjct: 4 KAIIHSDNAPAAIGTYSQAVKVNNTVYLSGQIPLDPV----TMQLVEGDFAVQAHQVFKN 59
Query: 124 IGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARV 183
+ + +A+G +VK + L DL +F VNE+ +YF +P PARA + LP + +
Sbjct: 60 LRAVCEAAGGGLRDIVKLNVYLTDLANFPIVNEVMGQYFQAPYPARAAIGINQLPRASLI 119
Query: 184 EIECIAAL 191
E + I +
Sbjct: 120 EADGIMVI 127
>pdb|1J7H|A Chain A, Solution Structure Of Hi0719, A Hypothetical Protein From
Haemophilus Influenzae
pdb|1J7H|B Chain B, Solution Structure Of Hi0719, A Hypothetical Protein From
Haemophilus Influenzae
pdb|1J7H|C Chain C, Solution Structure Of Hi0719, A Hypothetical Protein From
Haemophilus Influenzae
Length = 130
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 9/131 (6%)
Query: 63 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLK 122
+ + + T KAPAA+GPY QA+ NLV SG + + P TG+ +D + Q Q L+
Sbjct: 2 MTQIIHTEKAPAAIGPYVQAVDLGNLVLTSGQIPVNP----ATGEVPADIVA-QARQSLE 56
Query: 123 NIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPA----PARATYQVAALP 178
N+ I++ +G + +VKTT+ + DL DF VN Y ++F PAR+ +VA LP
Sbjct: 57 NVKAIIEKAGLTAADIVKTTVFVKDLNDFAAVNAEYERFFKENNHPNFPARSCVEVARLP 116
Query: 179 LDARVEIECIA 189
D +EIE IA
Sbjct: 117 KDVGLEIEAIA 127
>pdb|3V4D|A Chain A, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
pdb|3V4D|C Chain C, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
pdb|3V4D|F Chain F, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
pdb|3V4D|B Chain B, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
pdb|3V4D|D Chain D, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
pdb|3V4D|E Chain E, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
Length = 134
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
Query: 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKN 123
K ++ + A L P+ A+ +V+VSG L + +D + QT VL+
Sbjct: 9 KSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHN----NVLFADDPKAQTRHVLET 64
Query: 124 IGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARV 183
I ++++ +G + V +I + D K++ +NEIYA++FP PAR Q + DA V
Sbjct: 65 IRKVIETAGGTXADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALV 124
Query: 184 EIECIAAL 191
EI IA +
Sbjct: 125 EIATIAHI 132
>pdb|3K12|A Chain A, Crystal Structure Of An Uncharacterized Protein A6v7t0
From Pseudomonas Aeruginosa
pdb|3K12|B Chain B, Crystal Structure Of An Uncharacterized Protein A6v7t0
From Pseudomonas Aeruginosa
pdb|3K12|C Chain C, Crystal Structure Of An Uncharacterized Protein A6v7t0
From Pseudomonas Aeruginosa
pdb|3K12|D Chain D, Crystal Structure Of An Uncharacterized Protein A6v7t0
From Pseudomonas Aeruginosa
pdb|3K12|E Chain E, Crystal Structure Of An Uncharacterized Protein A6v7t0
From Pseudomonas Aeruginosa
pdb|3K12|F Chain F, Crystal Structure Of An Uncharacterized Protein A6v7t0
From Pseudomonas Aeruginosa
Length = 122
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 67 VVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGE 126
VV +A AL N V++ G V + P S I+DQT Q+L+NI
Sbjct: 7 VVKRRAEXAL--------HGNTVYIGG---QVADDP-------SGDIQDQTRQILENIDR 48
Query: 127 ILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPS-PAPARATYQVAALPLDARVEI 185
+L++ G+D V+ ILLA +D+ +N+++ ++FP AP RA + RVE
Sbjct: 49 LLQSVGSDRGQVLSVRILLAHREDYAGLNQVWDQWFPEGRAPTRACSLAELIDPRWRVEX 108
Query: 186 ECIAA 190
+AA
Sbjct: 109 IVVAA 113
>pdb|3KJJ|A Chain A, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|B Chain B, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|C Chain C, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|D Chain D, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|E Chain E, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|F Chain F, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|G Chain G, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|H Chain H, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|I Chain I, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|J Chain J, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|K Chain K, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|L Chain L, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJK|A Chain A, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|B Chain B, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|C Chain C, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|D Chain D, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|E Chain E, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|F Chain F, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|G Chain G, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|H Chain H, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|I Chain I, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|J Chain J, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|K Chain K, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|L Chain L, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
Length = 128
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 12/117 (10%)
Query: 79 YSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSV 138
YS+A+ AN L+F+SG VPE+ +T +QT VL I L G+D + V
Sbjct: 20 YSEAVGANGLIFLSGX---VPEN--------GETAAEQTADVLAQIDRWLAECGSDKAHV 68
Query: 139 VKTTILLADLKDFKTVNEIYAKYFPS-PAPARATYQVAALPLDARVEIECIAALPNA 194
+ I L D D+ N ++ + + PARA + + RVEI+ A +A
Sbjct: 69 LDAVIYLRDXGDYAEXNGVWDAWVAAGRTPARACVEARLARPEWRVEIKITAVKRDA 125
>pdb|3I7T|A Chain A, Crystal Structure Of Rv2704, A Member Of Highly Conserved
YjgfYER057CUK114 FAMILY, FROM MYCOBACTERIUM TUBERCULOSIS
Length = 149
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 79 YSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSV 138
YS+A++ LV V+G G D I QT L+ I L +GA + V
Sbjct: 19 YSRAVRIGPLVVVAGTTG------------SGDDIAAQTRDALRRIEIALGQAGATLADV 66
Query: 139 VKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAAL 177
V+T I + D+ ++ V E++A+ F P + +V AL
Sbjct: 67 VRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTAL 105
>pdb|3GTZ|A Chain A, Crystal Structure Of A Putative Translation Initiation
Inhibitor From Salmonella Typhimurium
pdb|3GTZ|B Chain B, Crystal Structure Of A Putative Translation Initiation
Inhibitor From Salmonella Typhimurium
pdb|3GTZ|C Chain C, Crystal Structure Of A Putative Translation Initiation
Inhibitor From Salmonella Typhimurium
Length = 124
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 79 YSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSV 138
+S + NN ++ +GV PE+ +D E QT L I +L+ G+ S +
Sbjct: 14 WSDVVIYNNTLWYTGV----PEN------LDADAFE-QTANTLAQIDAVLEKQGSSKSRI 62
Query: 139 VKTTILLADLKDFKTVNEIYAKY-FPSPAPARATYQVAALPLDARVEIECIAAL 191
+ TI L+D DF +N+ + + AP R T Q + +VEI+ +AA+
Sbjct: 63 LDATIFLSDKADFAAMNKAWDAWVVAGHAPVRCTVQAGLMNPKYKVEIKIVAAV 116
>pdb|3LYB|A Chain A, Structure Of Putative Endoribonuclease(Kp1_3112) From
Klebsiella Pneumoniae
pdb|3LYB|B Chain B, Structure Of Putative Endoribonuclease(Kp1_3112) From
Klebsiella Pneumoniae
pdb|3LYB|C Chain C, Structure Of Putative Endoribonuclease(Kp1_3112) From
Klebsiella Pneumoniae
pdb|3LYB|D Chain D, Structure Of Putative Endoribonuclease(Kp1_3112) From
Klebsiella Pneumoniae
Length = 165
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 23/144 (15%)
Query: 72 APAALGPYSQAIKANNLVFVSGVLGLVPESP-----FQ------------TGKFVSDT-- 112
A A L Y+ +A + +F+SG++ + P + FQ TG+F +D
Sbjct: 7 AGAPLARYAAWRRAGDFIFLSGIIPVNPLTGTIVNGFQDVPEPVRELLGATGEFSTDAKQ 66
Query: 113 --IEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARA 170
I Q+ VL++I + ++G S V+K +L F + + ++P P
Sbjct: 67 GPILAQSWYVLESIRRTVASAGGQXSDVIKLVQYFRNLDHFPYYSRVRKLFYPDQPPVST 126
Query: 171 TYQVAALPLDARV--EIECIAALP 192
QV+ DA V E+E LP
Sbjct: 127 VVQVSEXLPDATVLIEVEATVWLP 150
>pdb|1PF5|A Chain A, Structural Genomics, Protein Yjgh
Length = 131
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 51/124 (41%), Gaps = 23/124 (18%)
Query: 79 YSQAIKANNLVFVSGVLGL----VPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGAD 134
YS AI++ +L+FVSG +G PE FQ Q N+ L A+G
Sbjct: 21 YSAAIRSGDLLFVSGQVGSREDGTPEPDFQQ----------QVRLAFDNLHATLAAAGCT 70
Query: 135 YSSVVKTTILLAD----LKDFKTV-NEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 189
+ ++ T D +D TV NEI++ P P V L EI+ IA
Sbjct: 71 FDDIIDVTSFHTDPENQFEDIMTVKNEIFSA---PPYPNWTAVGVTWL-AGFDFEIKVIA 126
Query: 190 ALPN 193
+P
Sbjct: 127 RIPE 130
>pdb|3LME|A Chain A, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|B Chain B, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|C Chain C, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|D Chain D, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|E Chain E, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|F Chain F, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|G Chain G, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|H Chain H, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|I Chain I, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|J Chain J, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|K Chain K, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|L Chain L, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
Length = 138
Score = 33.5 bits (75), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Query: 62 NLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVL 121
+LK T+K G +S +A + VF+ G+ G + TGK V D E + ++
Sbjct: 2 SLKIIAPTDKTITPSGTWSIGARAGDFVFIGGMHG----TDRVTGKMV-DGDEARIRRMF 56
Query: 122 KNIGEILKASGADYSSVVKTTILLADLKDFK-TVNEIYAKYF-PSPAPARATYQVAALPL 179
N+ +A+GA + V+ T+ + D+ ++ VN++ + P P R QV AL
Sbjct: 57 DNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQ 116
Query: 180 DARVEIE 186
EI+
Sbjct: 117 GDIAEID 123
>pdb|2NRL|A Chain A, Blackfin Tuna Myoglobin
pdb|2NX0|A Chain A, Ferrous Nitrosyl Blackfin Tuna Myoglobin
Length = 147
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 120 VLKNIGEILKASGADYSSVVK------TTILLADLKDFKTVNEIYAKYFPSPAPARATYQ 173
VLK +GE+LKA G+ +++++K T + +FK ++E+ K A A Q
Sbjct: 64 VLKKLGELLKAKGS-HAAILKPLANSHATKHKIPINNFKLISEVLVKVMQEKAGLDAGGQ 122
Query: 174 VA 175
A
Sbjct: 123 TA 124
>pdb|1MYT|A Chain A, Crystal Structure To 1.74 Angstroms Resolution Of
Metmyoglobin From Yellowfin Tuna (Thunnus Albacares): An
Example Of A Myoglobin Lacking The D Helix
Length = 146
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 120 VLKNIGEILKASGADYSSVVK------TTILLADLKDFKTVNEIYAKYFPSPAPARATYQ 173
VLK +GE+LKA G+ +++++K T + +FK ++E+ K A A Q
Sbjct: 63 VLKKLGELLKAKGS-HAAILKPLANSHATKHKIPINNFKLISEVLVKVMHEKAGLDAGGQ 121
Query: 174 VA 175
A
Sbjct: 122 TA 123
>pdb|3QM5|A Chain A, Blackfin Tuna Oxy-Myoglobin, Atomic Resolution
pdb|3QM6|A Chain A, Blackfin Tuna Deoxy-Myoglobin, Atomic Resolution
pdb|3QM7|A Chain A, Blackfin Tuna Carbonmonoxy-Myoglobin, Atomic Resolution
pdb|3QM8|A Chain A, Blackfin Tuna Cyanomet-Myoglobin, Atomic Resolution
pdb|3QM9|A Chain A, Blackfin Tuna Azido-Myoglobin, Atomic Resolution
pdb|3QMA|A Chain A, Blackfin Tuna Myoglobin Imidazole Complex, Atomic
Resolution
Length = 146
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 120 VLKNIGEILKASGADYSSVVK------TTILLADLKDFKTVNEIYAKYFPSPAPARATYQ 173
VLK +GE+LKA G+ +++++K T + +FK ++E+ K A A Q
Sbjct: 64 VLKKLGELLKAKGS-HAAILKPLANSHATKHKIPINNFKLISEVLVKVMQEKAGLDAGGQ 122
Query: 174 VA 175
A
Sbjct: 123 TA 124
>pdb|2NRM|A Chain A, S-Nitrosylated Blackfin Tuna Myoglobin
Length = 147
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 120 VLKNIGEILKASGADYSSVVK------TTILLADLKDFKTVNEIYAKYFPSPAPARATYQ 173
VLK +GE+LKA G+ +++++K T + +FK ++E+ K A A Q
Sbjct: 64 VLKKLGELLKAKGS-HAAILKPLANSHATKHKIPINNFKLISEVLVKVMQEKAGLDAGGQ 122
Query: 174 VA 175
A
Sbjct: 123 TA 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,245,763
Number of Sequences: 62578
Number of extensions: 190534
Number of successful extensions: 626
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 40
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)