Query 029379
Match_columns 194
No_of_seqs 181 out of 1286
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 11:59:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029379.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029379hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00004 endoribonuclease L-P 100.0 8.5E-36 1.8E-40 228.2 15.0 123 65-191 2-124 (124)
2 TIGR03610 RutC pyrimidine util 100.0 8E-36 1.7E-40 230.5 14.6 123 65-191 4-126 (127)
3 PRK11401 putative endoribonucl 100.0 1.7E-35 3.6E-40 228.9 14.2 123 65-192 3-128 (129)
4 COG0251 TdcF Putative translat 100.0 2.9E-35 6.2E-40 228.4 14.9 123 66-193 6-130 (130)
5 PF01042 Ribonuc_L-PSP: Endori 100.0 2.8E-34 6E-39 219.2 15.4 118 70-191 2-121 (121)
6 cd06154 YjgF_YER057c_UK114_lik 100.0 3.1E-34 6.7E-39 218.7 13.6 117 68-189 2-119 (119)
7 cd06152 YjgF_YER057c_UK114_lik 100.0 1.7E-33 3.7E-38 213.8 13.7 108 78-190 2-114 (114)
8 cd02199 YjgF_YER057c_UK114_lik 100.0 2E-32 4.3E-37 215.3 14.3 123 67-189 4-141 (142)
9 cd02198 YjgH_like YjgH belongs 100.0 1.5E-32 3.2E-37 207.0 12.5 108 78-191 2-111 (111)
10 cd06150 YjgF_YER057c_UK114_lik 100.0 3E-31 6.6E-36 198.0 12.7 103 78-190 2-105 (105)
11 cd06156 eu_AANH_C_2 A group of 100.0 8.7E-31 1.9E-35 200.1 13.7 105 79-189 1-118 (118)
12 cd06153 YjgF_YER057c_UK114_lik 100.0 6.8E-30 1.5E-34 194.1 12.5 105 79-189 1-114 (114)
13 cd00448 YjgF_YER057c_UK114_fam 100.0 2.5E-29 5.4E-34 185.5 12.7 106 79-189 1-107 (107)
14 cd06151 YjgF_YER057c_UK114_lik 100.0 1.5E-28 3.3E-33 189.2 13.3 111 79-189 1-126 (126)
15 cd06155 eu_AANH_C_1 A group of 100.0 5.1E-28 1.1E-32 179.6 11.9 97 83-190 4-101 (101)
16 KOG2317 Putative translation i 100.0 2E-28 4.2E-33 190.7 9.9 127 62-192 5-131 (138)
17 PF14588 YjgF_endoribonc: YjgF 99.9 5E-21 1.1E-25 151.1 11.4 131 61-191 2-148 (148)
18 PRK14643 hypothetical protein; 44.8 1E+02 0.0022 24.8 6.6 64 112-175 3-85 (164)
19 PF02662 FlpD: Methyl-viologen 41.8 1.2E+02 0.0027 22.9 6.4 59 87-154 54-112 (124)
20 TIGR01884 cas_HTH CRISPR locus 41.0 85 0.0018 25.5 5.8 46 114-162 37-83 (203)
21 KOG2240 RNA polymerase II gene 37.0 53 0.0012 26.5 3.8 79 77-162 76-157 (162)
22 COG0779 Uncharacterized protei 28.9 1.8E+02 0.004 23.1 5.7 60 117-176 7-81 (153)
23 PF04468 PSP1: PSP1 C-terminal 28.4 2.2E+02 0.0047 20.2 6.4 52 112-163 19-80 (88)
24 cd04918 ACT_AK1-AT_2 ACT domai 27.8 1.3E+02 0.0029 19.5 4.1 45 119-163 15-65 (65)
25 KOG0100 Molecular chaperones G 26.1 1.6E+02 0.0035 27.8 5.5 52 117-169 342-393 (663)
26 COG1908 FrhD Coenzyme F420-red 24.7 1.5E+02 0.0032 23.1 4.2 36 118-153 77-112 (132)
27 PF07108 PipA: PipA protein; 23.3 60 0.0013 26.4 2.0 34 89-131 40-73 (200)
28 PRK14646 hypothetical protein; 23.3 3E+02 0.0065 21.7 6.0 58 118-175 7-81 (155)
29 PTZ00112 origin recognition co 21.1 3.7E+02 0.0079 28.2 7.3 62 86-165 781-845 (1164)
30 cd04937 ACT_AKi-DapG-BS_2 ACT 20.6 2.3E+02 0.0051 18.1 4.2 45 117-162 14-63 (64)
No 1
>TIGR00004 endoribonuclease L-PSP, putative. This protein was described initially as an inhibitor of protein synthesis intiation but is now viewed as an endoribonuclease active on single-stranded mRNA. The cleavage of mRNA is responsible for the inhibition of protein synthesis. A role in purine regulation has also been suggested.
Probab=100.00 E-value=8.5e-36 Score=228.24 Aligned_cols=123 Identities=54% Similarity=0.825 Sum_probs=116.9
Q ss_pred hhhcCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEE
Q 029379 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTIL 144 (194)
Q Consensus 65 ~~i~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvy 144 (194)
+.+++++.|++.|+|||++++|+++|+|||+|+|++ +|++.++|+++|++++|+||+++|+++|++++||+++++|
T Consensus 2 ~~~~~~~~~~~~~~ys~av~~g~~v~vSGq~~~~~~----~g~~~~~d~~~Q~~~~~~ni~~~L~~aG~~~~dvv~~~vy 77 (124)
T TIGR00004 2 KIISTDKAPAAIGPYSQAVKVGNTLFVSGQIPLDPS----TGELVGGDIAEQAEQVLENLKAILEAAGLSLDDVVKTTVF 77 (124)
T ss_pred ceecCCCCCCCCCCCcceEEECCEEEEeeeCCCcCC----CCcCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEE
Confidence 356788999999999999999999999999999997 6787668999999999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEe
Q 029379 145 LADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 191 (194)
Q Consensus 145 v~d~~df~~vn~v~~~~fg~~~Part~v~V~~Lp~~~lVEIe~iA~~ 191 (194)
++|++||+.+|++|.+||+.++|+||+++|..|+++++||||++|++
T Consensus 78 v~~~~~~~~~~~~~~~~f~~~~Pa~t~v~v~~L~~~~~vEIe~vA~~ 124 (124)
T TIGR00004 78 LTDLNDFAEVNEVYGQYFDEPYPARSAVQVAALPKGVLVEIEAIAVK 124 (124)
T ss_pred EeChHHHHHHHHHHHHHcCCCCCceEEEECccCCCCCEEEEEEEEEC
Confidence 99999999999999999999899999999999999999999999974
No 2
>TIGR03610 RutC pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.
Probab=100.00 E-value=8e-36 Score=230.46 Aligned_cols=123 Identities=28% Similarity=0.509 Sum_probs=114.4
Q ss_pred hhhcCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEE
Q 029379 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTIL 144 (194)
Q Consensus 65 ~~i~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvy 144 (194)
+.++++..|.+.++|||++++|+++|+|||+|+|++ ++.+.++|+++|++++|+||+++|+++|++++||+++++|
T Consensus 4 ~~i~~~~~~~~~~~ys~av~~g~~v~vSGq~~~d~~----g~~~~~~d~~~Q~~~~l~ni~~iL~~aG~~~~dvv~~~iy 79 (127)
T TIGR03610 4 KVIIPAGTSKPLAPFVPGTLADGVVYVSGTLPFDKD----NNVVHVGDAAAQTRHVLETIKSVIETAGGTMDDVTFNHIF 79 (127)
T ss_pred eEeCCCCCCCCCCCCCCeEEECCEEEEeccCCcCCC----CCeeCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEE
Confidence 457889999999999999999999999999999997 3333368999999999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEe
Q 029379 145 LADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 191 (194)
Q Consensus 145 v~d~~df~~vn~v~~~~fg~~~Part~v~V~~Lp~~~lVEIe~iA~~ 191 (194)
++|++||+.+|++|.+||++++|+||+++|..|+++++||||++|++
T Consensus 80 l~d~~~~~~~~~~~~~~f~~~~Pa~t~v~v~l~~p~~lVEIe~vA~~ 126 (127)
T TIGR03610 80 IRDWADYAAINEVYAEYFPGEKPARYCIQCGLVKPDALVEIASVAHI 126 (127)
T ss_pred EcCHHHHHHHHHHHHHHcCCCCCcEEEEEeccCCCCCEEEEEEEEEe
Confidence 99999999999999999999899999999977788999999999986
No 3
>PRK11401 putative endoribonuclease L-PSP; Provisional
Probab=100.00 E-value=1.7e-35 Score=228.91 Aligned_cols=123 Identities=37% Similarity=0.704 Sum_probs=115.2
Q ss_pred hhhcCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEE
Q 029379 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTIL 144 (194)
Q Consensus 65 ~~i~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvy 144 (194)
+.+++++.|.+.|+|||++++|+++|+|||+|+|++ +|++ ++|+++|++++|+||+++|+++|++++||+|+++|
T Consensus 3 ~~~~~~~~~~~~~~ys~av~~g~~v~vSGq~~~d~~----~~~~-~~d~~~Q~~~~~~ni~~~L~aaG~~~~~Vvk~~vy 77 (129)
T PRK11401 3 KIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQ----TGEI-PADVQDQARLSLENVKAIVVAAGLSVGDIIKMTVF 77 (129)
T ss_pred ceecCCCCCCCCCCccceEEECCEEEEcCcCCccCC----CCcc-CcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEE
Confidence 346788899999999999999999999999999997 6765 58999999999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHhCCCC---CCceEEEEcCCCCCCceEEEEEEEEec
Q 029379 145 LADLKDFKTVNEIYAKYFPSP---APARATYQVAALPLDARVEIECIAALP 192 (194)
Q Consensus 145 v~d~~df~~vn~v~~~~fg~~---~Part~v~V~~Lp~~~lVEIe~iA~~~ 192 (194)
++|++||+.+|++|.+||+++ +|+||+++|..|+++++||||++|+++
T Consensus 78 l~d~~~~~~~~~v~~~~f~~~~~~~Part~v~v~~L~~~~~VEIe~~A~~~ 128 (129)
T PRK11401 78 ITDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLPKDVKLEIEAIAVRS 128 (129)
T ss_pred EccHHHHHHHHHHHHHHhCCCCCCCCceEEEEcccCCCCCeEEEEEEEEec
Confidence 999999999999999999953 899999999999999999999999865
No 4
>COG0251 TdcF Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-35 Score=228.40 Aligned_cols=123 Identities=50% Similarity=0.790 Sum_probs=115.3
Q ss_pred hhcCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCcccc-ccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEE
Q 029379 66 AVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVS-DTIEDQTEQVLKNIGEILKASGADYSSVVKTTIL 144 (194)
Q Consensus 66 ~i~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~-~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvy 144 (194)
.+.++..|++.++|||++++|+++|+|||+|++++ |+.+. +|+++|++++|+||+++|+++|++++||+|+++|
T Consensus 6 ~~~~~~~~~~~~~yS~av~~~~~vfvSGQi~~~~~-----g~~v~~~d~~~Q~~~~l~ni~a~L~~aG~~~~~Vvk~~v~ 80 (130)
T COG0251 6 IIATPNAPAPIGPYSQAVVAGGLVFVSGQIPLDPT-----GELVGGEDIEAQTRQALANIKAVLEAAGSTLDDVVKVTVF 80 (130)
T ss_pred cccCCCCCCCCCCccceEEECCEEEEeCcCCcCCC-----CcccCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEE
Confidence 35678899999999999999999999999999985 66665 5999999999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHhCCC-CCCceEEEEcCCCCCCceEEEEEEEEecC
Q 029379 145 LADLKDFKTVNEIYAKYFPS-PAPARATYQVAALPLDARVEIECIAALPN 193 (194)
Q Consensus 145 v~d~~df~~vn~v~~~~fg~-~~Part~v~V~~Lp~~~lVEIe~iA~~~~ 193 (194)
++|++||..+|++|.+||+. ++|+|++++|..||++++||||++|++++
T Consensus 81 l~d~~~f~~~n~v~~~~f~~~~~PArs~V~v~~l~~~~~VEIeaiA~~~~ 130 (130)
T COG0251 81 LTDMNDFAAMNEVYDEFFEVGGYPARSAVGVALLPPDALVEIEAIAALPE 130 (130)
T ss_pred ecCchHHHHHHHHHHHHhccCCCCceeEEEhhhCCCCCeEEEEEEEEecC
Confidence 99999999999999999995 59999999999999999999999999874
No 5
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=100.00 E-value=2.8e-34 Score=219.17 Aligned_cols=118 Identities=50% Similarity=0.805 Sum_probs=108.4
Q ss_pred CCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEEcCCC
Q 029379 70 NKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLK 149 (194)
Q Consensus 70 ~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvyv~d~~ 149 (194)
.++|+|.++|||+++.|+++|+|||+|+|++ +|++.++|+++|++++|+||+++|+++|++++||+|+++|++|++
T Consensus 2 ~~a~~p~~~Ys~av~~g~~v~isGq~~~d~~----~~~~~~~~~~~Q~~~~l~ni~~~L~~~G~~~~dvv~~~~yl~d~~ 77 (121)
T PF01042_consen 2 ISAPEPIGPYSQAVRAGDTVFISGQVGIDPA----TGQVVPGDIEEQTRQALDNIERILAAAGASLDDVVKVTVYLTDMS 77 (121)
T ss_dssp TTSCCCSSSSBSEEEETTEEEEEEEESBCTT----TSSBSSSSHHHHHHHHHHHHHHHHHHTTS-GGGEEEEEEEESSGG
T ss_pred CcCCCCCCCCCCEEEECCEEEEeeeCCcCCC----CCcCCCCCHHHHHHHHHHhhhhhhhcCCCcceeEeeeeehhhhhh
Confidence 4688999999999999999999999999987 688878999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCCC--CCceEEEEcCCCCCCceEEEEEEEEe
Q 029379 150 DFKTVNEIYAKYFPSP--APARATYQVAALPLDARVEIECIAAL 191 (194)
Q Consensus 150 df~~vn~v~~~~fg~~--~Part~v~V~~Lp~~~lVEIe~iA~~ 191 (194)
+|+.++++|.+||+.. +|+||+++|..|+++++||||++|++
T Consensus 78 ~~~~~~~v~~~~f~~~~~~Pa~t~v~v~~L~~~~~vEIe~~A~v 121 (121)
T PF01042_consen 78 DFPAVNEVWKEFFPDHPHRPARTTVGVSALPPGALVEIEAIAVV 121 (121)
T ss_dssp GHHHHHHHHHHHSTSSTS--EEEEEEESBSGGG-SEEEEEEEE-
T ss_pred hhHHHHHHHHHHhcccCCCCcEEEEEeCcCCCCCcEEEEEEEEC
Confidence 9999999999999965 59999999999999999999999975
No 6
>cd06154 YjgF_YER057c_UK114_like_6 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=100.00 E-value=3.1e-34 Score=218.74 Aligned_cols=117 Identities=31% Similarity=0.415 Sum_probs=110.8
Q ss_pred cCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEEcC
Q 029379 68 VTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLAD 147 (194)
Q Consensus 68 ~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvyv~d 147 (194)
.++..+++.++|||++++|+++|+|||+|+|++ |...++|+++|++++|+||+++|+++|++++||+|+++|++|
T Consensus 2 ~~~~~~~~~~~ys~av~~g~~l~vSGq~~~d~~-----~~~~~~d~~~Q~~~~~~ni~~~L~~aG~~~~dVvk~~vyl~d 76 (119)
T cd06154 2 SSGSPWEEQAGYSRAVRVGNWVFVSGTTGYDYD-----GMVMPGDAYEQTRQCLEIIEAALAEAGASLEDVVRTRMYVTD 76 (119)
T ss_pred CCCCCcccccCcccEEEECCEEEEeCcCcCCCC-----CCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECC
Confidence 467788999999999999999999999999997 445678999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhCCCCCCceEEEEcCCC-CCCceEEEEEEE
Q 029379 148 LKDFKTVNEIYAKYFPSPAPARATYQVAAL-PLDARVEIECIA 189 (194)
Q Consensus 148 ~~df~~vn~v~~~~fg~~~Part~v~V~~L-p~~~lVEIe~iA 189 (194)
++||+.+|++|++||++++|+||+++|..| +++++||||++|
T Consensus 77 ~~~~~~~~~~~~~~f~~~~Part~v~v~~L~~~~~lVEIe~~A 119 (119)
T cd06154 77 IADFEAVGRAHGEVFGDIRPAATMVVVSLLVDPEMLVEIEVTA 119 (119)
T ss_pred HHHHHHHHHHHHHHcCCCCCceEEEEecccCCCCcEEEEEEEC
Confidence 999999999999999999999999999999 789999999986
No 7
>cd06152 YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=100.00 E-value=1.7e-33 Score=213.81 Aligned_cols=108 Identities=32% Similarity=0.492 Sum_probs=102.9
Q ss_pred CcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcC-CCccceeEEEEEEcCC---CCHHH
Q 029379 78 PYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASG-ADYSSVVKTTILLADL---KDFKT 153 (194)
Q Consensus 78 ~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG-~~l~dVvk~tvyv~d~---~df~~ 153 (194)
+|||++++|+++|+|||+|+|++ ++.+ ++|+++|++++|+||+++|+++| ++++||+|+++|++|+ ++|+.
T Consensus 2 ~ys~av~~g~~v~~SGq~g~d~~----g~~~-~~d~~~Q~~~~~~Nl~~~L~~aG~~~~~dVvk~tvyltd~~~~~~~~~ 76 (114)
T cd06152 2 HYSQAVRIGDRIEISGQGGWDPD----TGKI-PEDLEEEIDQAFDNVELALKAAGGKGWEQVYKVNSYHVDIKNEEAFGL 76 (114)
T ss_pred CCCCeEEECCEEEEeccCCcCCC----CCcc-CcCHHHHHHHHHHHHHHHHHHhCCCCHHHEEEEEEEEecCCcHHHHHH
Confidence 79999999999999999999998 4564 88999999999999999999999 9999999999999999 79999
Q ss_pred HHHHHHHhCCCCCCceEEEEcCCCC-CCceEEEEEEEE
Q 029379 154 VNEIYAKYFPSPAPARATYQVAALP-LDARVEIECIAA 190 (194)
Q Consensus 154 vn~v~~~~fg~~~Part~v~V~~Lp-~~~lVEIe~iA~ 190 (194)
+|++|++||++++|+||+++|..|+ ++++||||++|+
T Consensus 77 ~~~~~~~~f~~~~Pa~t~v~V~~L~~p~~lVEIe~~A~ 114 (114)
T cd06152 77 MVENFKKWMPNHQPIWTCVGVTALGLPGMRVEIEVDAI 114 (114)
T ss_pred HHHHHHHHcCCCCCCeEEEEeccCCCCCcEEEEEEEEC
Confidence 9999999999999999999999997 799999999985
No 8
>cd02199 YjgF_YER057c_UK114_like_1 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=100.00 E-value=2e-32 Score=215.29 Aligned_cols=123 Identities=32% Similarity=0.413 Sum_probs=109.6
Q ss_pred hcCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccc----cccHHHHHHHHHHHHHHHHHHcCCCcc---cee
Q 029379 67 VVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFV----SDTIEDQTEQVLKNIGEILKASGADYS---SVV 139 (194)
Q Consensus 67 i~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~----~~d~~~Q~~~~l~ni~~iL~~aG~~l~---dVv 139 (194)
+++++.+++.++||+++++|+++|+|||+|+|+++...+|.+. ++|+++|++++|+||+++|+++|++++ ||+
T Consensus 4 ~~~~~~~~~~~~ys~av~~g~~l~vSGq~~~d~~~~~~~g~i~~~~~~~d~~~Qt~~~~~Ni~~vL~~aG~~~~~~~dVv 83 (142)
T cd02199 4 LELPPAPAPVGNYVPAVRTGNLLYVSGQLPRVDGKLVYTGKVGADLSVEEGQEAARLCALNALAALKAALGDLDRVKRVV 83 (142)
T ss_pred ccCCCCCCCCCccceEEEECCEEEEeCcCCCCCCCccccCccccccChHHHHHHHHHHHHHHHHHHHHhcCChhhcCCEE
Confidence 5678899999999999999999999999999986322234432 358999999999999999999999988 999
Q ss_pred EEEEEEcCCCCHHHH-------HHHHHHhCCC-CCCceEEEEcCCCCCCceEEEEEEE
Q 029379 140 KTTILLADLKDFKTV-------NEIYAKYFPS-PAPARATYQVAALPLDARVEIECIA 189 (194)
Q Consensus 140 k~tvyv~d~~df~~v-------n~v~~~~fg~-~~Part~v~V~~Lp~~~lVEIe~iA 189 (194)
|+++|++|++||+.+ |++|.+||++ ++|+||+++|..|+++++||||++|
T Consensus 84 k~~vyl~d~~~~~~~~~~~~~~~~v~~~~f~~~~~Part~v~V~~L~~~~~VEIe~~A 141 (142)
T cd02199 84 RLTGFVNSAPDFTEQPKVANGASDLLVEVFGEAGRHARSAVGVASLPLNAAVEVEAIV 141 (142)
T ss_pred EEEEEEechHHhhhchhhhHHHHHHHHHHcCCCCCCceEEEEhhhCCCCCEEEEEEEE
Confidence 999999999999874 7899999995 6999999999999989999999998
No 9
>cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=100.00 E-value=1.5e-32 Score=207.01 Aligned_cols=108 Identities=30% Similarity=0.507 Sum_probs=102.3
Q ss_pred CcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEEcCC-CCHHHHHH
Q 029379 78 PYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADL-KDFKTVNE 156 (194)
Q Consensus 78 ~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvyv~d~-~df~~vn~ 156 (194)
+||+++++|+++|+|||+|+|++ |++ ++|+++|++++|+||+++|+++|++++||+|+++|++|. +||+.+|+
T Consensus 2 ~ys~av~~g~~l~vSGq~~~d~~-----g~~-~~d~~~Q~~~~~~ni~~~L~~aG~~~~dvvk~~vyl~~~~~~~~~~~~ 75 (111)
T cd02198 2 GYSPAVRVGDTLFVSGQVGSDAD-----GSV-AEDFEAQFRLAFQNLGAVLEAAGCSFDDVVELTTFHVDMAAHLPAFAA 75 (111)
T ss_pred CCcceEEECCEEEEecccCcCCC-----CCc-CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEeccHHHHHHHHH
Confidence 79999999999999999999986 664 789999999999999999999999999999999999965 89999999
Q ss_pred HHHHhCCCCCCceEEEEcCCCC-CCceEEEEEEEEe
Q 029379 157 IYAKYFPSPAPARATYQVAALP-LDARVEIECIAAL 191 (194)
Q Consensus 157 v~~~~fg~~~Part~v~V~~Lp-~~~lVEIe~iA~~ 191 (194)
+|.+||++++|+||+++|..|+ ++++||||++|++
T Consensus 76 ~~~~~f~~~~Pa~t~v~V~~L~~~~~~vEIe~~A~~ 111 (111)
T cd02198 76 VKDEYFKEPYPAWTAVGVAWLARPGLLVEIKVVAVR 111 (111)
T ss_pred HHHHHcCCCCCceehhhhhhcCCCCcEEEEEEEEEC
Confidence 9999999999999999999998 7999999999974
No 10
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.97 E-value=3e-31 Score=198.02 Aligned_cols=103 Identities=36% Similarity=0.487 Sum_probs=96.9
Q ss_pred CcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEEcCCCCHHHHHHH
Q 029379 78 PYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEI 157 (194)
Q Consensus 78 ~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvyv~d~~df~~vn~v 157 (194)
+|||++++|+++|+|||+|.|+ ++|+++|++++|+||+++|+++|++++||+|+++|++|++||+.+|++
T Consensus 2 ~~s~av~~g~~v~iSGq~~~~~----------~~~~~~Q~~~~~~nl~~~L~~~G~~~~dvvk~~vyl~d~~~~~~~~~~ 71 (105)
T cd06150 2 RMSQAVVHNGTVYLAGQVADDT----------SADITGQTRQVLAKIDALLAEAGSDKSRILSATIWLADMADFAAMNAV 71 (105)
T ss_pred CcCCEEEECCEEEEeCcCCcCC----------CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEccHHHHHHHHHH
Confidence 6999999999999999999875 368999999999999999999999999999999999999999999999
Q ss_pred HHHhCCC-CCCceEEEEcCCCCCCceEEEEEEEE
Q 029379 158 YAKYFPS-PAPARATYQVAALPLDARVEIECIAA 190 (194)
Q Consensus 158 ~~~~fg~-~~Part~v~V~~Lp~~~lVEIe~iA~ 190 (194)
|.+||++ ++|+||++++..++++++||||++|+
T Consensus 72 ~~~~f~~~~~Pa~t~v~~~l~~~~~lvEIe~~Aa 105 (105)
T cd06150 72 WDAWVPPGHAPARACVEAKLADPGYLVEIVVTAA 105 (105)
T ss_pred HHHHcCCCCCCCeEEEEecccCCCCEEEEEEEEC
Confidence 9999995 89999999986666899999999984
No 11
>cd06156 eu_AANH_C_2 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the second of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.97 E-value=8.7e-31 Score=200.06 Aligned_cols=105 Identities=28% Similarity=0.385 Sum_probs=100.2
Q ss_pred cccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEEcCCCCHHHHHHHH
Q 029379 79 YSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIY 158 (194)
Q Consensus 79 ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvyv~d~~df~~vn~v~ 158 (194)
|||++++|+++|+|||+|+||+ ++.+.++|+++|++|+|+||+++|+++|+ +||+|+++|++|+++++.+|++|
T Consensus 1 yS~av~~~~~i~vSGQ~g~d~~----~~~~~~~~~~~Q~~qal~Ni~~vL~~aG~--~dVvk~~iyl~d~~~~~~~~~v~ 74 (118)
T cd06156 1 YSQAIVVPKVAYISGQIGLIPA----TMTLLEGGITLQAVLSLQHLERVAKAMNV--QWVLAAVCYVTDESSVPIARSAW 74 (118)
T ss_pred CCceEEECCEEEEEeeCCccCC----CCccCCCCHHHHHHHHHHHHHHHHHHcCC--CCEEEEEEEEcChHHHHHHHHHH
Confidence 8999999999999999999998 56777889999999999999999999999 99999999999999999999999
Q ss_pred HHhCCCC-------------CCceEEEEcCCCCCCceEEEEEEE
Q 029379 159 AKYFPSP-------------APARATYQVAALPLDARVEIECIA 189 (194)
Q Consensus 159 ~~~fg~~-------------~Part~v~V~~Lp~~~lVEIe~iA 189 (194)
.+||+.+ +|+|++++|..||++++||||+++
T Consensus 75 ~~~f~~~~~~~~~~~~~~~~~P~~t~v~V~~L~~~~~VEie~i~ 118 (118)
T cd06156 75 SKYCSELDLEDESRNESDDVNPPLVIVVVPELPRGALVEWQGIA 118 (118)
T ss_pred HHHhcCccccccccccccCCCCcEEEEEcccCCCCCeEEEEEeC
Confidence 9999964 899999999999999999999974
No 12
>cd06153 YjgF_YER057c_UK114_like_5 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.97 E-value=6.8e-30 Score=194.11 Aligned_cols=105 Identities=30% Similarity=0.446 Sum_probs=96.1
Q ss_pred cccEEEE----CCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCC-----ccceeEEEEEEcCCC
Q 029379 79 YSQAIKA----NNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGAD-----YSSVVKTTILLADLK 149 (194)
Q Consensus 79 ys~av~~----g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~-----l~dVvk~tvyv~d~~ 149 (194)
|||++.+ |+++|+|||+|+|++ |++.++|+++|++++|+||+.+|+++|++ ++||+|+++|++|++
T Consensus 1 ~s~a~~~~~~~g~~v~vSGq~~~d~~-----g~~~~~d~~~Q~~~~l~ni~~~L~~aG~~~~~~~~~dVvk~~vyl~d~~ 75 (114)
T cd06153 1 FSRATLLAAGGRTHLFISGTASIVGH-----GTVHPGDVEAQTRETLENIEALLEAAGRGGGAQFLADLLRLKVYLRDRE 75 (114)
T ss_pred CCCceeeccCCCcEEEEEeECcCCCC-----CCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCccchhheeEEEEEEccHH
Confidence 8999988 899999999999997 66668899999999999999999999999 999999999999999
Q ss_pred CHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEE
Q 029379 150 DFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 189 (194)
Q Consensus 150 df~~vn~v~~~~fg~~~Part~v~V~~Lp~~~lVEIe~iA 189 (194)
||+.+|++|++||++++|+ |++.+..++++++||||++|
T Consensus 76 ~~~~~~~v~~~~f~~~~P~-t~~~~~l~~p~~lvEIe~~A 114 (114)
T cd06153 76 DLPAVRAILAARLGPAVPA-VFLQADVCRPDLLVEIEAVA 114 (114)
T ss_pred HHHHHHHHHHHHcCCCCCE-EEEEeeecCCCcEEEEEEEC
Confidence 9999999999999976665 77765445689999999986
No 13
>cd00448 YjgF_YER057c_UK114_family YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.96 E-value=2.5e-29 Score=185.51 Aligned_cols=106 Identities=51% Similarity=0.809 Sum_probs=101.5
Q ss_pred cccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEEcCCCCHHHHHHHH
Q 029379 79 YSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIY 158 (194)
Q Consensus 79 ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvyv~d~~df~~vn~v~ 158 (194)
|+|++++|+++|+|||+|.+++ |...++|+++|++++|+||+++|+++|++++||+++++|++|+++|+.+|++|
T Consensus 1 ys~~~~~~~~~~~sGq~~~~~~-----~~~~~~~~~~Q~~~~~~ni~~~L~~~g~~~~~iv~~~~yv~~~~~~~~~~~~~ 75 (107)
T cd00448 1 YSQAVRVGNLVFVSGQIPLDPD-----GELVPGDIEAQTRQALENLEAVLEAAGGSLDDVVKVTVYLTDMADFAAVNEVY 75 (107)
T ss_pred CCCeEEECCEEEEeccCCcCCC-----CcccCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEecHHHHHHHHHHH
Confidence 8999999999999999999997 45557899999999999999999999999999999999999999999999999
Q ss_pred HHhCCC-CCCceEEEEcCCCCCCceEEEEEEE
Q 029379 159 AKYFPS-PAPARATYQVAALPLDARVEIECIA 189 (194)
Q Consensus 159 ~~~fg~-~~Part~v~V~~Lp~~~lVEIe~iA 189 (194)
.+||+. ++|+|++++|..||++++||||++|
T Consensus 76 ~~~~~~~~~Pa~t~v~v~~l~~~~~VEie~~a 107 (107)
T cd00448 76 DEFFGEGPPPARTAVGVAALPPGALVEIEAIA 107 (107)
T ss_pred HHHhCCCCCCceEEEEeccCCCCCEEEEEEEC
Confidence 999997 8999999999999999999999986
No 14
>cd06151 YjgF_YER057c_UK114_like_3 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.96 E-value=1.5e-28 Score=189.16 Aligned_cols=111 Identities=34% Similarity=0.459 Sum_probs=97.1
Q ss_pred cccEEEEC---CEEEEeeeccCCCCCCCccCcc-ccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEEc-CCC----
Q 029379 79 YSQAIKAN---NLVFVSGVLGLVPESPFQTGKF-VSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLA-DLK---- 149 (194)
Q Consensus 79 ys~av~~g---~~vyiSGq~~~d~~~~~~~G~~-~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvyv~-d~~---- 149 (194)
|||++++. ++||+|||+|.+++.....|.. .++|+++|++++|+||+.+|+++|++++||+|+++|++ |++
T Consensus 1 ~s~~~~v~~~~~~i~vSGq~~~~~d~~~~~g~~~~~~d~~~Q~~~~l~ni~~~L~~aG~~~~dVvk~~vyl~~~~~~~~~ 80 (126)
T cd06151 1 IAQAVEVPAGAATIYLSGTVPAVVNASAPKGSPARYGDTETQTISVLKRIETILQSQGLTMGDVVKMRVFLVADPALDGK 80 (126)
T ss_pred CCceEEeCCCceEEEEeccCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEecCccccch
Confidence 79999885 7999999999877622222333 24799999999999999999999999999999999998 555
Q ss_pred -CHHHHHHHHHHhCCC----CCCceEEEEcCCCC-CCceEEEEEEE
Q 029379 150 -DFKTVNEIYAKYFPS----PAPARATYQVAALP-LDARVEIECIA 189 (194)
Q Consensus 150 -df~~vn~v~~~~fg~----~~Part~v~V~~Lp-~~~lVEIe~iA 189 (194)
||+.++++|.+||++ ++|+||+++|..|+ |+++||||++|
T Consensus 81 ~~~~~~~~~~~~~f~~~~~~~~Pa~t~v~V~~L~~p~~~VEIe~iA 126 (126)
T cd06151 81 MDFAGFMKAYRQFFGTAEQPNKPARSTLQVAGLVNPGWLVEIEVVA 126 (126)
T ss_pred hhHHHHHHHHHHHhccccCCCCCceEEEEeeecCCCCcEEEEEEEC
Confidence 899999999999996 68999999999998 69999999986
No 15
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.95 E-value=5.1e-28 Score=179.61 Aligned_cols=97 Identities=30% Similarity=0.616 Sum_probs=90.3
Q ss_pred EEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEEcCCCCHHHHHHHHHHhC
Q 029379 83 IKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYF 162 (194)
Q Consensus 83 v~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvyv~d~~df~~vn~v~~~~f 162 (194)
.++|+++|+|||+|.|+ ++|+++|++++|+||+++|+++|++++||+++++|++|++||+.+|++|.+||
T Consensus 4 ~~~g~~v~vSG~~~~~~----------~~d~~~Q~~~v~~ni~~~L~~aG~~~~dVv~~~iyl~d~~~~~~~n~~~~~~f 73 (101)
T cd06155 4 NRTGGLLWISNVTASES----------DETVEEQMESIFSKLREILQSNGLSLSDILYVTLYLRDMSDFAEVNSVYGTFF 73 (101)
T ss_pred EEECCEEEEecCCCCCC----------CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHc
Confidence 46799999999999875 46899999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCceEEEEcCCCCCCceEEEEEEEE
Q 029379 163 P-SPAPARATYQVAALPLDARVEIECIAA 190 (194)
Q Consensus 163 g-~~~Part~v~V~~Lp~~~lVEIe~iA~ 190 (194)
+ .++|+|+++++ .|+++++||||++|+
T Consensus 74 ~~~~~Par~~v~~-~l~~~~lvEIe~vA~ 101 (101)
T cd06155 74 DKPNPPSRVCVEC-GLPEGCDVQLSCVAA 101 (101)
T ss_pred CCCCCCceEEEEe-ccCCCCEEEEEEEEC
Confidence 9 56899999997 677999999999984
No 16
>KOG2317 consensus Putative translation initiation inhibitor UK114/IBM1 [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2e-28 Score=190.68 Aligned_cols=127 Identities=58% Similarity=0.871 Sum_probs=121.2
Q ss_pred hhhhhhcCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEE
Q 029379 62 NLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKT 141 (194)
Q Consensus 62 ~l~~~i~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~ 141 (194)
.++.++++.|+|..+|||||+++++|.+|+|||.|++|. ++++..+.+.+|++++++|++++|+++|++.+.+|+.
T Consensus 5 ~l~v~v~S~~Ap~~igPYsQa~~~~~~~~~SGqigl~P~----s~~~~~gg~~~q~~q~l~n~~~il~~a~a~~~~~V~~ 80 (138)
T KOG2317|consen 5 VLHVQVISYWAPANIGPYSQATKANDVVFISGQIGLDPP----SMKLVEGGIVDQTEQALLNLEEILKAAGASLDLVVKV 80 (138)
T ss_pred eeEEEEeeccCCCCcCChhHheeeCCEEEEeccccccCC----CCCEeccchHHHHHHHHHHHHHHHHHhccCccccEEE
Confidence 456678899999999999999999999999999999998 7999899999999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEec
Q 029379 142 TILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALP 192 (194)
Q Consensus 142 tvyv~d~~df~~vn~v~~~~fg~~~Part~v~V~~Lp~~~lVEIe~iA~~~ 192 (194)
++|+.|+.||..+|++|.+||..+.|+|++++|.+||++..||+|+++...
T Consensus 81 ~i~l~d~~~f~~vn~v~~k~~~~~~pars~~~v~alp~~~~ie~~~i~~~~ 131 (138)
T KOG2317|consen 81 TIFLADIIDFAAVNKVYAKYFPKPNPARSCVQVAALPLNGKIEIECIAAEA 131 (138)
T ss_pred EEEEecchhHHHHHHHHHHHcCCCCcchhhHHHhhcCCCCceEEeeehhhc
Confidence 999999999999999999999999999999999999999999999998653
No 17
>PF14588 YjgF_endoribonc: YjgF/chorismate_mutase-like, putative endoribonuclease; PDB: 2OTM_B 3D01_D.
Probab=99.85 E-value=5e-21 Score=151.07 Aligned_cols=131 Identities=32% Similarity=0.430 Sum_probs=96.2
Q ss_pred Hhhhhh-hcCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccc-cH---HHHHHHHHHHHHHHHHHcCCCc
Q 029379 61 SNLKEA-VVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSD-TI---EDQTEQVLKNIGEILKASGADY 135 (194)
Q Consensus 61 ~~l~~~-i~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~-d~---~~Q~~~~l~ni~~iL~~aG~~l 135 (194)
++++++ +..|..|.|.|.|.+.+++|+++|+|||+|.+.+...++|++..+ ++ .+-+++|..|+.+.|+.+=+++
T Consensus 2 ~rL~~lGl~LP~~~~p~g~Y~p~~~~G~ll~vSGq~p~~~g~~~~~G~vG~~~s~e~g~~AAr~~~Ln~La~lk~~~G~L 81 (148)
T PF14588_consen 2 ARLAELGLELPEPPAPVGNYVPAVRVGNLLYVSGQLPRDDGKLLYTGKVGEDLSVEEGYEAARLCALNALAALKAALGDL 81 (148)
T ss_dssp HHHHHTT---------SSSC-SEEEETTEEEEEEE--EETTEE-SBS-BTTTB-HHHHHHHHHHHHHHHHHHHHHHCTSG
T ss_pred hhHHHcCCCCCCCCCCCceeeeEEEECCEEEEeccCcccCCEEeeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 567777 889999999999999999999999999999998877788987643 33 3459999999999999987777
Q ss_pred c---ceeEEEEEEcCCCCHHH-------HHHHHHHhCC-CCCCceEEEEcCCCCCCceEEEEEEEEe
Q 029379 136 S---SVVKTTILLADLKDFKT-------VNEIYAKYFP-SPAPARATYQVAALPLDARVEIECIAAL 191 (194)
Q Consensus 136 ~---dVvk~tvyv~d~~df~~-------vn~v~~~~fg-~~~Part~v~V~~Lp~~~lVEIe~iA~~ 191 (194)
+ .|+|++.||...++|.+ ..+++.+.|| .+.|+|+.+||..||.|+.||||+|+.+
T Consensus 82 drV~~ivkl~g~V~s~~~F~~~p~V~ngaSdll~~vfGe~G~HaRsAvGv~sLP~~a~VEie~i~ei 148 (148)
T PF14588_consen 82 DRVKRIVKLTGFVNSTPDFTEHPAVANGASDLLVEVFGEAGRHARSAVGVASLPLNAPVEIELIAEI 148 (148)
T ss_dssp GGECEEEEEEEEEEB-TT---HHHHHHHHHHHHHHHHGGGG-BEEEEEEESC-GGGBSEEEEEEEE-
T ss_pred hHEeEEEEEEEEEecCCCcccCchhhhhHHHHHHHHhCcCCCCcccccccccCCCCCeEEEEEEEEC
Confidence 7 56999999999999976 4588999999 7899999999999999999999999864
No 18
>PRK14643 hypothetical protein; Provisional
Probab=44.81 E-value=1e+02 Score=24.78 Aligned_cols=64 Identities=11% Similarity=0.141 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHHHHHHHHHcCCCcccee--------EEEEEEcC---------CCCHHHHHHHHHHhCC--CCCCceEEE
Q 029379 112 TIEDQTEQVLKNIGEILKASGADYSSVV--------KTTILLAD---------LKDFKTVNEIYAKYFP--SPAPARATY 172 (194)
Q Consensus 112 d~~~Q~~~~l~ni~~iL~~aG~~l~dVv--------k~tvyv~d---------~~df~~vn~v~~~~fg--~~~Part~v 172 (194)
|+.....++.+.++.++++.|+.+-||- -++||+.+ ++|...+++...+.+. ++-|-.-.+
T Consensus 3 ~~~~~~~~l~~l~~p~~~~~G~eL~die~~~~~~~~~lrV~Id~~~~~~ggvtldDC~~vSr~is~~LD~~d~i~~~Y~L 82 (164)
T PRK14643 3 DFESIKFQINELVNKELEVLNLKVYEINNLKEFENDMIQILVEDILQANKPLDFDILIKANDLVSNKIDQFIKTSEKYLL 82 (164)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEecCCCcCCCcCHHHHHHHHHHHHHHhCccCCCCCCeEE
Confidence 5677777888889999999998877653 26888843 2367888888888887 555666667
Q ss_pred EcC
Q 029379 173 QVA 175 (194)
Q Consensus 173 ~V~ 175 (194)
+|+
T Consensus 83 EVS 85 (164)
T PRK14643 83 EIS 85 (164)
T ss_pred Eec
Confidence 764
No 19
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=41.79 E-value=1.2e+02 Score=22.91 Aligned_cols=59 Identities=19% Similarity=0.199 Sum_probs=43.3
Q ss_pred CEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEEcCCCCHHHH
Q 029379 87 NLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTV 154 (194)
Q Consensus 87 ~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvyv~d~~df~~v 154 (194)
|=|++.|--+ |+-.-..-...++.-++.++++|++.|.+.+.|--..++..+.+.|.+.
T Consensus 54 DGV~V~gC~~---------g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~~~~~~fa~~ 112 (124)
T PF02662_consen 54 DGVLVAGCHP---------GDCHYREGNYRAEKRVERLKKLLEELGIEPERVRLYWISAPEGKRFAEI 112 (124)
T ss_pred CEEEEeCCCC---------CCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEEEeCcccHHHHHHH
Confidence 6778877643 2222223345678888999999999999999998888888877777654
No 20
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=41.05 E-value=85 Score=25.48 Aligned_cols=46 Identities=22% Similarity=0.357 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccceeEEEEEEcCCCCHHH-HHHHHHHhC
Q 029379 114 EDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKT-VNEIYAKYF 162 (194)
Q Consensus 114 ~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvyv~d~~df~~-vn~v~~~~f 162 (194)
+++.+++.++++++++..+.. .+++.++-.|..|+.. +.++.....
T Consensus 37 ~~~~~~a~~~l~~~~~~~~~~---~~~~~~~~vd~~d~~~~~~~v~~~i~ 83 (203)
T TIGR01884 37 EDGARRAVESLRAIISDLGGN---LVEGTIKEIELKDVPSILRQMSDIIK 83 (203)
T ss_pred chHHHHHHHHHHHHHHHhccC---CCcceEEEEecCCHHHHHHHHHHHHH
Confidence 478899999999999998733 3566777777777755 444443333
No 21
>KOG2240 consensus RNA polymerase II general transcription factor BTF3 and related proteins [Transcription]
Probab=37.00 E-value=53 Score=26.54 Aligned_cols=79 Identities=18% Similarity=0.135 Sum_probs=49.7
Q ss_pred CCcccEEEECCEEEEeeeccCCCCCCCccCccccc---cHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEEcCCCCHHH
Q 029379 77 GPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSD---TIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKT 153 (194)
Q Consensus 77 g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~---d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvyv~d~~df~~ 153 (194)
++-.|+...++++-|+|+...++. +. +.|+ ++..|.-..++.+...|.......++-. .++|.. .++++.
T Consensus 76 ~~~vqasl~~nTf~ItG~~~~k~l----~E-mlPsilsqLg~~sl~~Lr~La~~l~~~~~~~~~~~-~~~~~~-dd~~p~ 148 (162)
T KOG2240|consen 76 NPKVQASLAANTFTITGHAETKQL----TE-MLPSILSQLGPDSLTALRRLAEQLPKQDGKEGADA-ATIEDD-DDDVPE 148 (162)
T ss_pred CccccccccCCeEEEecCCcccch----hh-hcchhhhhcChhhHHHHHHHHHhcccccccCCCCc-cchhhc-ccchHH
Confidence 345666677999999999988886 33 3343 3344555566666666664444333333 666666 557777
Q ss_pred HHHHHHHhC
Q 029379 154 VNEIYAKYF 162 (194)
Q Consensus 154 vn~v~~~~f 162 (194)
+.+.+.++.
T Consensus 149 Lvenf~~~~ 157 (162)
T KOG2240|consen 149 LVENFDEAA 157 (162)
T ss_pred HHHhHHHHh
Confidence 776666653
No 22
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.87 E-value=1.8e+02 Score=23.15 Aligned_cols=60 Identities=20% Similarity=0.281 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHcCCCcccee--------EEEEEEcC-----CCCHHHHHHHHHHhCC--CCCCceEEEEcCC
Q 029379 117 TEQVLKNIGEILKASGADYSSVV--------KTTILLAD-----LKDFKTVNEIYAKYFP--SPAPARATYQVAA 176 (194)
Q Consensus 117 ~~~~l~ni~~iL~~aG~~l~dVv--------k~tvyv~d-----~~df~~vn~v~~~~fg--~~~Part~v~V~~ 176 (194)
.+++.+-++.++++.|+.+-||- .+++|+.+ ++|.+.+.+.....|. ++-+..-.++|+.
T Consensus 7 ~~~v~~liep~~~~lG~ELv~ve~~~~~~~~~lrI~id~~g~v~lddC~~vSr~is~~LD~edpi~~~Y~LEVSS 81 (153)
T COG0779 7 TEKVTELIEPVVESLGFELVDVEFVKEGRDSVLRIYIDKEGGVTLDDCADVSRAISALLDVEDPIEGAYFLEVSS 81 (153)
T ss_pred HHHHHHHHHHhHhhcCcEEEEEEEEEcCCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHhccCCcccccEEEEeeC
Confidence 45677788999999999887763 35577764 5688999999999998 4455556677753
No 23
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=28.43 E-value=2.2e+02 Score=20.18 Aligned_cols=52 Identities=23% Similarity=0.302 Sum_probs=38.7
Q ss_pred cHHHHHHHHHHHHHHHHHHcCCCcc--------ceeEEEEEEcCCC--CHHHHHHHHHHhCC
Q 029379 112 TIEDQTEQVLKNIGEILKASGADYS--------SVVKTTILLADLK--DFKTVNEIYAKYFP 163 (194)
Q Consensus 112 d~~~Q~~~~l~ni~~iL~~aG~~l~--------dVvk~tvyv~d~~--df~~vn~v~~~~fg 163 (194)
..+.+.+.++...+..+++.|..+. |=-|+++|.+... ||..+.+.+.+.|+
T Consensus 19 ~~~~~e~~al~~c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~a~~rvDFR~Lvr~L~~~f~ 80 (88)
T PF04468_consen 19 RLREREEEALKFCRELVKELGLPMKLVDVEYQFDGSKLTFYYTAESRVDFRELVRDLAREFK 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEcCCCEEEEEEEeCCcCcHHHHHHHHHHHhC
Confidence 3456678899999999999998665 4568888888654 78887665555554
No 24
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.85 E-value=1.3e+02 Score=19.49 Aligned_cols=45 Identities=13% Similarity=0.287 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCCCcccee------EEEEEEcCCCCHHHHHHHHHHhCC
Q 029379 119 QVLKNIGEILKASGADYSSVV------KTTILLADLKDFKTVNEIYAKYFP 163 (194)
Q Consensus 119 ~~l~ni~~iL~~aG~~l~dVv------k~tvyv~d~~df~~vn~v~~~~fg 163 (194)
.++.++-.+|++.|....-+. .+.+.+.+-+--..++.++++||.
T Consensus 15 ~~~~~i~~aL~~~~I~v~~i~~g~s~~sis~~v~~~~~~~av~~Lh~~f~~ 65 (65)
T cd04918 15 LILERAFHVLYTKGVNVQMISQGASKVNISLIVNDSEAEGCVQALHKSFFE 65 (65)
T ss_pred cHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHHhC
Confidence 367788888899887774443 555555544334457777887763
No 25
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=26.13 E-value=1.6e+02 Score=27.76 Aligned_cols=52 Identities=17% Similarity=0.380 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHcCCCccceeEEEEEEcCCCCHHHHHHHHHHhCCCCCCce
Q 029379 117 TEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPAR 169 (194)
Q Consensus 117 ~~~~l~ni~~iL~~aG~~l~dVvk~tvyv~d~~df~~vn~v~~~~fg~~~Par 169 (194)
++.+|.-++.+|+.+|+..+||-.+ |.|-.-...+.+.++.++||.+..|.+
T Consensus 342 Fr~TlkPv~kvl~Ds~lkKsdidei-VLVGGsTrIPKvQqllk~fF~GKepsk 393 (663)
T KOG0100|consen 342 FRKTLKPVQKVLEDSDLKKSDIDEI-VLVGGSTRIPKVQQLLKDFFNGKEPSK 393 (663)
T ss_pred HHHhhHHHHHHHhhcCcccccCceE-EEecCcccChhHHHHHHHHhCCCCccC
Confidence 6777888999999999887776543 456666678999999999998665554
No 26
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=24.69 E-value=1.5e+02 Score=23.10 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHcCCCccceeEEEEEEcCCCCHHH
Q 029379 118 EQVLKNIGEILKASGADYSSVVKTTILLADLKDFKT 153 (194)
Q Consensus 118 ~~~l~ni~~iL~~aG~~l~dVvk~tvyv~d~~df~~ 153 (194)
+.=+++++++|++.|...+.|-.+-+-..+-+.|.+
T Consensus 77 ~rR~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e 112 (132)
T COG1908 77 KRRMELLKELLKELGIEPERVRVLWISAAEGEKFAE 112 (132)
T ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEehhhHHHHHH
Confidence 344688999999999999877655554444444443
No 27
>PF07108 PipA: PipA protein; InterPro: IPR010777 This family consists of several Salmonella PipA (pathogenicity island-encoded protein A) and related phage sequences. PipA is thought to contribute to enteric but not to systemic salmonellosis [].
Probab=23.34 E-value=60 Score=26.42 Aligned_cols=34 Identities=24% Similarity=0.511 Sum_probs=20.9
Q ss_pred EEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHc
Q 029379 89 VFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKAS 131 (194)
Q Consensus 89 vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~a 131 (194)
+|+||-.++||+ -+. .+ .|-..|.+.+..+|+.+
T Consensus 40 y~iSg~ggidpd-----~Ei-Dd---d~Y~eC~~eLS~il~~A 73 (200)
T PF07108_consen 40 YLISGAGGIDPD-----TEI-DD---DIYDECYDELSSILQNA 73 (200)
T ss_pred HHHhCCCCCCCc-----ccc-cc---hHHHHHHHHHHHHHHHH
Confidence 589999999998 222 23 34445555555555544
No 28
>PRK14646 hypothetical protein; Provisional
Probab=23.27 E-value=3e+02 Score=21.73 Aligned_cols=58 Identities=9% Similarity=0.078 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHcCCCcccee--------EEEEEEcC-------CCCHHHHHHHHHHhCC--CCCCceEEEEcC
Q 029379 118 EQVLKNIGEILKASGADYSSVV--------KTTILLAD-------LKDFKTVNEIYAKYFP--SPAPARATYQVA 175 (194)
Q Consensus 118 ~~~l~ni~~iL~~aG~~l~dVv--------k~tvyv~d-------~~df~~vn~v~~~~fg--~~~Part~v~V~ 175 (194)
+++.+-++.++++.|..+-||- .++||+.. ++|.+.+.+...+++. ++-|-.-.++|+
T Consensus 7 ~~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD~~D~i~~~Y~LEVS 81 (155)
T PRK14646 7 SKLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIENSNLLNCSYVLEIS 81 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhCcCCCCCCCeEEEEc
Confidence 3555667888899998777663 26777742 4578888888888887 555566666664
No 29
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=21.14 E-value=3.7e+02 Score=28.19 Aligned_cols=62 Identities=18% Similarity=0.279 Sum_probs=33.1
Q ss_pred CCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEEcCCC---CHHHHHHHHHHhC
Q 029379 86 NNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLK---DFKTVNEIYAKYF 162 (194)
Q Consensus 86 g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvyv~d~~---df~~vn~v~~~~f 162 (194)
++.+||+|..| +|+. .-++.+++.++...+..+...=+ .+|+..+. ....+..+|.+++
T Consensus 781 nnvLYIyG~PG--------TGKT------ATVK~VLrELqeeaeqk~lp~f~----vVYINCm~Lstp~sIYqvI~qqL~ 842 (1164)
T PTZ00112 781 NQILYISGMPG--------TGKT------ATVYSVIQLLQHKTKQKLLPSFN----VFEINGMNVVHPNAAYQVLYKQLF 842 (1164)
T ss_pred CceEEEECCCC--------CCHH------HHHHHHHHHHHHHHhhccCCCce----EEEEeCCccCCHHHHHHHHHHHHc
Confidence 46789999854 6764 34555666665544333322112 34444432 2344566666666
Q ss_pred CCC
Q 029379 163 PSP 165 (194)
Q Consensus 163 g~~ 165 (194)
+..
T Consensus 843 g~~ 845 (1164)
T PTZ00112 843 NKK 845 (1164)
T ss_pred CCC
Confidence 543
No 30
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=20.57 E-value=2.3e+02 Score=18.15 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHcCCCcccee----EEEEEEcCCCCHH-HHHHHHHHhC
Q 029379 117 TEQVLKNIGEILKASGADYSSVV----KTTILLADLKDFK-TVNEIYAKYF 162 (194)
Q Consensus 117 ~~~~l~ni~~iL~~aG~~l~dVv----k~tvyv~d~~df~-~vn~v~~~~f 162 (194)
...++.++-..|.+.|..+..+. .+.+.+ +.+|.. .++.++++|+
T Consensus 14 ~~gi~~~if~aL~~~~I~v~~~~~Se~~is~~v-~~~~~~~av~~Lh~~f~ 63 (64)
T cd04937 14 VPGVMAKIVGALSKEGIEILQTADSHTTISCLV-SEDDVKEAVNALHEAFE 63 (64)
T ss_pred CcCHHHHHHHHHHHCCCCEEEEEcCccEEEEEE-cHHHHHHHHHHHHHHhc
Confidence 34456677788888888775544 344444 444544 4666666664
Done!